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Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol 2019; 3:1241-1252. [PMID: 31358948 PMCID: PMC6668926 DOI: 10.1038/s41559-019-0945-8] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 06/13/2019] [Indexed: 01/24/2023]
Abstract
Monitor lizards are unique among ectothermic reptiles in that they have high aerobic capacity and distinctive cardiovascular physiology resembling that of endothermic mammals. Here, we sequence the genome of the Komodo dragon Varanus komodoensis, the largest extant monitor lizard, and generate a high-resolution de novo chromosome-assigned genome assembly for V. komodoensis using a hybrid approach of long-range sequencing and single-molecule optical mapping. Comparing the genome of V. komodoensis with those of related species, we find evidence of positive selection in pathways related to energy metabolism, cardiovascular homoeostasis, and haemostasis. We also show species-specific expansions of a chemoreceptor gene family related to pheromone and kairomone sensing in V. komodoensis and other lizard lineages. Together, these evolutionary signatures of adaptation reveal the genetic underpinnings of the unique Komodo dragon sensory and cardiovascular systems, and suggest that selective pressure altered haemostasis genes to help Komodo dragons evade the anticoagulant effects of their own saliva. The Komodo dragon genome is an important resource for understanding the biology of monitor lizards and reptiles worldwide.
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Affiliation(s)
| | - Yvonne Y Y Lai
- Cardiovascular Research Institute, University of California, San Francisco, CA, USA
| | - Yulia Mostovoy
- Cardiovascular Research Institute, University of California, San Francisco, CA, USA
| | | | - Alessio Iannucci
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Angel C Y Mak
- Cardiovascular Research Institute, University of California, San Francisco, CA, USA
| | - Marco Fondi
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Valerio Orlandini
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Walter L Eckalbar
- Institute for Human Genetics, University of California, San Francisco, CA, USA
| | - Massimo Milan
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Michail Rovatsos
- Department of Ecology, Charles University, Prague, Czech Republic
- Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, Liběchov, Czech Republic
| | - Ilya G Kichigin
- Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia
| | - Alex I Makunin
- Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia
| | - Martina Johnson Pokorná
- Department of Ecology, Charles University, Prague, Czech Republic
- Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, Liběchov, Czech Republic
| | - Marie Altmanová
- Department of Ecology, Charles University, Prague, Czech Republic
- Institute of Animal Physiology and Genetics, The Czech Academy of Sciences, Liběchov, Czech Republic
| | | | - Elio Schijlen
- B.U. Bioscience, Wageningen University, Wageningen, The Netherlands
| | - Lukáš Kratochvíl
- Department of Ecology, Charles University, Prague, Czech Republic
| | - Renato Fani
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | | | - Ivan Rehák
- Prague Zoological Garden, Prague, Czech Republic
| | - Tomaso Patarnello
- Department of Comparative Biomedicine and Food Science, University of Padova, Legnaro, Italy
| | - Tim S Jessop
- Centre for Integrative Ecology, Deakin University, Waurn Ponds, Victoria, Australia
| | - James W Hicks
- Department of Ecology and Evolutionary Biology, School of Biological Sciences, University of California, Irvine, CA, USA
| | - Oliver A Ryder
- Institute for Conservation Research, San Diego Zoo, Escondido, CA, USA
| | - Joseph R Mendelson
- Zoo Atlanta, Atlanta, GA, USA
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
| | - Claudio Ciofi
- Department of Biology, University of Florence, Sesto Fiorentino, Italy
| | - Pui-Yan Kwok
- Cardiovascular Research Institute, University of California, San Francisco, CA, USA
- Institute for Human Genetics, University of California, San Francisco, CA, USA
- Department of Dermatology, University of California, San Francisco, CA, USA
| | - Katherine S Pollard
- Gladstone Institutes, San Francisco, CA, USA.
- Institute for Human Genetics, University of California, San Francisco, CA, USA.
- Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA.
- Institute for Computational Health Sciences, University of California, San Francisco, CA, USA.
- Chan-Zuckerberg BioHub, San Francisco, CA, USA.
| | - Benoit G Bruneau
- Gladstone Institutes, San Francisco, CA, USA.
- Cardiovascular Research Institute, University of California, San Francisco, CA, USA.
- Department of Pediatrics, University of California, San Francisco, CA, USA.
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Jessop TS, Ariefiandy A, Purwandana D, Benu YJ, Hyatt M, Letnic M. Little to fear: largest lizard predator induces weak defense responses in ungulate prey. Behav Ecol 2019. [DOI: 10.1093/beheco/ary200] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Tim S Jessop
- Centre for Integrative Ecology, School of Life and Environmental Science, Deakin University, Waurn Ponds, Victoria, Australia
- Komodo Survival Program, Denpasar, Bali, Indonesia
| | | | | | | | - Matthew Hyatt
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, New South Wales, Australia
| | - Mike Letnic
- Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, New South Wales, Australia
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Abstract
We summarize the recent information on field metabolic rates (FMR) of wild terrestrial vertebrates as determined by the doubly labeled water technique. Allometric (scaling) relationships are calculated for mammals (79 species), reptiles (55 species), and birds (95 species) and for various taxonomic, dietary, and habitat groups within these categories. Exponential equations based on body mass are offered for predicting rates of daily energy expenditure and daily food requirements of free-ranging mammals, reptiles, and birds. Significant scaling differences between various taxa, dietary, and habitat groups (detected by analysis of covariance with P < or = 0.05) include the following: (a) The allometric slope for reptiles (0.889) is greater than that for mammals (0.734), which is greater than that for birds (0.681); (b) the slope for eutherian mammals (0.772) is greater than that for marsupial mammals (0.590); (c) among families of birds, slopes do not differ but elevations (intercepts) do, with passerine and procellariid birds having relatively high FMRs and gallinaceous birds having low FMRs; (d) Scleroglossan lizards have a higher slope (0.949) than do Iguanian lizards (0.793); (e) desert mammals have a higher slope (0.785) than do nondesert mammals; (f) marine birds have relatively high FMRs and desert birds have low FMRs; and (g) carnivorous mammals have a relatively high slope and carnivorous, insectivorous, and nectarivorous birds have relatively higher FMRs than do omnivores and granivores. The difference detected between passerine and nonpasserine birds reported in earlier reviews is not evident in the larger data set analyzed here. When the results are adjusted for phylogenetic effects using independent contrasts analysis, the difference between allometric slopes for marsupials and eutherians is no longer significant and the slope difference between Scleroglossan and Iguanian lizards disappears as well, but other taxonomic differences remain significant. Possible causes of the unexplained variations in FMR that could improve our currently inaccurate FMR prediction capabilities should be evaluated, including many important groups of terrestrial vertebrates that remain under- or unstudied and such factors as reproductive, thermoregulatory, social, and predator-avoidance behavior.
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Affiliation(s)
- K A Nagy
- Department of Organismic Biology, Ecology, and Evolution, University of California, Los Angeles 90095-1606, USA.
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Secor SM, Phillips JA. Specific dynamic action of a large carnivorous lizard, Varanus albigularis. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART A, PHYSIOLOGY 1997; 117:515-22. [PMID: 9219355 DOI: 10.1016/s0300-9629(96)00412-4] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Varanus albigularis inhabits grasslands of southern and eastern Africa and experiences months of fasting during the dry season (May-December) followed by voracious feeding during the wet season (January-April). Previous studies have found that sit-and-wait foraging snakes, which also experience long intervals between large meals, exhibit unprecedented increases in post-feeding metabolism, which reflects the added cost of up-regulating a previously quiescent gut and digesting a large meal. Hence we measured pre- and post-prandial oxygen consumption rates (VO2) of adult V. albigularis in order to observe whether they exhibit similarly large metabolic responses to digestion as sit-and-wait foraging snakes. Following the consumption of meals consisting of ground turkey and snails, hard-boiled eggs, or juvenile rats, lizards rapidly increased their VO2 to peak within 24-27 hr at 7-10 times pre-feeding values (mean = 0.035 mL O2.g-1.h-1). During the 60-90 hr of significantly elevated VO2, the extra oxygen consumed (the specific dynamic action) represented an energy expenditure of 830-1260 kJ. For meals that were fully digested, specific dynamic action equalled 24% of ingested energy. The magnitudes of V. albigularis post-prandial metabolic responses are similar to those previously observed for sit-and-wait foraging snakes. Like sit-and-wait foraging snakes, V. albigularis may also down-regulate intestinal performance during their months of fasting (suggested by their relatively low standard metabolic rate) and then up-regulate their gut (bearing its high energetic cost) upon feeding.
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Affiliation(s)
- S M Secor
- Department of Physiology, UCLA School of Medicine 90095-1751, USA.
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14
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Christian KA, Corbett LK, Green B, Weavers BW. Seasonal activity and energetics of two species of varanid lizards in tropical Australia. Oecologia 1995; 103:349-357. [PMID: 28306829 DOI: 10.1007/bf00328624] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/1995] [Accepted: 03/29/1995] [Indexed: 11/26/2022]
Abstract
The field metabolic rates (FMR) and rates of water flux were measured in two species of varanid lizards over five periods of the year in tropical Australia. The energetics of these species were further investigated by directly measuring activity (locomotion) and body temperatures of free-ranging animals by radiotelemetry, and by measuring standard metabolic rate (over a range of body temperatures) and activity metabolism in the laboratory. Seasonal differences in the activity and energetics were found in these goannas despite similar, high daytime temperatures throughout the year in tropical Australia. Periods of inactivity were associated with the dry times of the year, but the onset of this period of inactivity differed with respect to habitat even within the same species. Varanus gouldii, which inhabit woodlands only, were inactive during the dry and late dry seasons. V. panoptes that live in the woodland had a similar seasonal pattern of activity, but V. panoptes living near the floodplain of the South Alligator River had their highest levels of activity during the dry season when they walked long distances to forage at the receding edge of the floodplain. However, during the late dry season, after the floodplain had dried completely, they too became inactive. For V. gouldii, the rates of energy expenditure were 196 kJ kg-1 day-1 for active animals and 66 kJ kg-1 day-1 for inactive animals. The rates of water influx for these groups were respectively 50.7 and 19.5 ml kg-1 day-1. For V. panoptes, the rates of energy expenditure were 143 kJ kg-1 day-1 for active animals and 56 kJ kg-1 day-1 for inactive animals. The rates of water influx for these two groups were respectively 41.4 and 21.0 ml kg-1 day-1. We divided the daily energy expenditure into the proportion of energy that lizards used when "in burrows", "out of burrows but inactive", and "in locomotion" for the two species during the different seasons. The time spent in locomotion by V. panoptes during the dry season is extremely high for a reptile (mean of 3.5 h/day spent walking), and these results provide an ecological correlate to the high aerobic capacity found in laboratory measurements of some species of varanids.
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Affiliation(s)
- Keith A Christian
- School of Biological Sciences, Northern Territory University, 0909, Darwin, Northern Territory, Australia
| | - L K Corbett
- Division of Wildlife and Ecology, CSIRO, P.M.B. 44, 0821, Winnellie, Northern Territory, Australia
| | - Brian Green
- Division of Wildlife and Ecology, CSIRO, P.O. Box 84, 2602, Lyneham, ACT, Australia
| | - Brian W Weavers
- Australian Heritage Commission, GPO Box 1567, 2601, Canberra, ACT, Australia
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