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Fan L, Xie P, Wang Y, Huang Z, Zhou J. Biosurfactant-Protein Interaction: Influences of Mannosylerythritol Lipids-A on β-Glucosidase. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:238-246. [PMID: 29239606 DOI: 10.1021/acs.jafc.7b04469] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In this work, the influences of a biosurfactant, mannosylerythritol lipids-A (MEL-A) toward β-glucosidase activity and their molecular interactions were studied by using differential scanning calorimetry (DSC), circular dichroism spectroscopy (CD), isothermal titration calorimetry (ITC), and docking simulation. The enzyme inhibition kinetics data showed that MEL-A at a low concentration (< critical micelle concentration (CMC), 20.0 ± 5.0 μM) enhanced β-glucosidase activity, whereas it inhibited the enzyme activity at higher concentrations more than 20.0 μM, followed by a decreased Vmax and Km of β-glucosidase. The thermodynamics and structural data demonstrated that the midpoint temperature (Tm) and unfolding enthalpy (ΔH) of β-glucosidase was shifted to high values (76.6 °C, 126.3 J/g) in the presence of MEL-A, and the secondary structure changes of β-glucosidase, including the increased α-helix, β-turn, or random coil contents, and a decreased β-sheet content were caused by MEL-A at a CMC concentration. The further ITC and docking simulations suggested the bindings of MEL-A toward β-glucosidase were driven by weak hydrophobic interactions happened between the amino acid residues of β-glucosidase and the fatty acid residues of MEL-A, in addition to hydrogen bonds between amino acids and hydroxyl in glycosyl residues of this biosurfactant.
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Affiliation(s)
- Linlin Fan
- Institute of Agro-product Processing , Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu 210014, China
| | - Pujun Xie
- Institute of Chemical Industry of Forest Products, CAF , Key Laboratory of Biomass Energy and Material, Nanjing, Jiangsu 210042, China
| | - Ying Wang
- Institute of Agro-product Processing , Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu 210014, China
| | - Zisu Huang
- Institute of Agro-product Processing , Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu 210014, China
| | - Jianzhong Zhou
- Institute of Agro-product Processing , Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu 210014, China
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Recombinant thermo-alkali-stable endoglucanase of Myceliopthora thermophila BJA (rMt-egl): Biochemical characteristics and applicability in enzymatic saccharification of agro-residues. Int J Biol Macromol 2017; 104:107-116. [DOI: 10.1016/j.ijbiomac.2017.05.167] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2017] [Revised: 05/13/2017] [Accepted: 05/30/2017] [Indexed: 11/17/2022]
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Wu Q, Zhang Y, Tang H, Chen Y, Xie B, Wang C, Sun Z. Separation and Identification of Anthocyanins Extracted from Blueberry Wine Lees and Pigment Binding Properties toward β-Glucosidase. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:216-223. [PMID: 27976572 DOI: 10.1021/acs.jafc.6b04244] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Anthocyanins were isolated from blueberry wine lees using Sephadex LH-20 column chromatography and semipreparative high-performance liquid chromatography (semipreparative HPLC) and then identified by HPLC-DAD-ESI-MS/MS. Our results show that malvidin-3-hexose (Mv-3-hex) and malvidin-3-(6'acetyl)-hexose (Mv-3-ace-hex) are the major components in the anthocyanin extracts of blueberry wine lees (>90%). The binding characteristics of Mv-3-hex and Mv-3-ace-hex with β-glucosidase were investigated by fluorescence spectroscopy, circular dichroism (CD) spectroscopy, and molecular docking. Spectroscopic analysis revealed that β-glucosidase fluorescence quenched by Mv-3-hex and Mv-3-ace-hex follows a static mode. Binding of Mv-3-hex and Mv-3-ace-hex to β-glucosidase mainly depends on electrostatic force. The result from CD spectra shows that adaptive structure rearrangement and increase of β-sheet structure occur only in the presence of Mv-3-ace-hex. A molecular docking study suggests that Mv-3-ace-hex has stronger binding with β-glucosidase than Mv-3-hex.
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Affiliation(s)
- Qian Wu
- Hubei Collaborative Innovation Center for Industrial Fermentation, Research Center of Food Fermentation Engineering and Technology of Hubei, Hubei University of Technology , Wuhan, Hubei 430068, China
| | - Yang Zhang
- Natural Product Laboratory, Department of Food Science and Technology, Huazhong AgriculturalUniversity , Wuhan, Hubei 430070, People's Republic of China
| | - Hu Tang
- Department of Product Processing and Nutriology, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences , Hubei Key Laboratory of Lipid Chemistry and Nutrition, Ministry of Agriculture Key Laboratory of Oil Crops Biology, Wuhan 430062, China
| | - Yashu Chen
- Natural Product Laboratory, Department of Food Science and Technology, Huazhong AgriculturalUniversity , Wuhan, Hubei 430070, People's Republic of China
| | - Bijun Xie
- Natural Product Laboratory, Department of Food Science and Technology, Huazhong AgriculturalUniversity , Wuhan, Hubei 430070, People's Republic of China
| | - Chao Wang
- Hubei Collaborative Innovation Center for Industrial Fermentation, Research Center of Food Fermentation Engineering and Technology of Hubei, Hubei University of Technology , Wuhan, Hubei 430068, China
| | - Zhida Sun
- Natural Product Laboratory, Department of Food Science and Technology, Huazhong AgriculturalUniversity , Wuhan, Hubei 430070, People's Republic of China
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Mutation of a conserved tryptophan residue in the CBM3c of a GH9 endoglucanase inhibits activity. Int J Biol Macromol 2016; 92:159-166. [DOI: 10.1016/j.ijbiomac.2016.06.091] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Revised: 06/29/2016] [Accepted: 06/29/2016] [Indexed: 02/01/2023]
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Payne CM, Knott BC, Mayes HB, Hansson H, Himmel ME, Sandgren M, Ståhlberg J, Beckham GT. Fungal Cellulases. Chem Rev 2015; 115:1308-448. [DOI: 10.1021/cr500351c] [Citation(s) in RCA: 533] [Impact Index Per Article: 59.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Christina M. Payne
- Department
of Chemical and Materials Engineering and Center for Computational
Sciences, University of Kentucky, 177 F. Paul Anderson Tower, Lexington, Kentucky 40506, United States
| | - Brandon C. Knott
- National
Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver
West Parkway, Golden, Colorado 80401, United States
| | - Heather B. Mayes
- Department
of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
| | - Henrik Hansson
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Michael E. Himmel
- Biosciences
Center, National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Mats Sandgren
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Jerry Ståhlberg
- Department
of Chemistry and Biotechnology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Almas allé 5, SE-75651 Uppsala, Sweden
| | - Gregg T. Beckham
- National
Bioenergy Center, National Renewable Energy Laboratory, 15013 Denver
West Parkway, Golden, Colorado 80401, United States
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6
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Interaction of cellulase with three phenolic acids. Food Chem 2013; 138:1022-7. [DOI: 10.1016/j.foodchem.2012.10.129] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2012] [Revised: 10/02/2012] [Accepted: 10/24/2012] [Indexed: 11/18/2022]
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7
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Bakalova NG, Petrova SD, Kolev DN. Catalytically Important Amino Acid Residues in Endoxylanases from Aspergillus Awamori. BIOTECHNOL BIOTEC EQ 2009. [DOI: 10.1080/13102818.2009.10818505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Petrova SD, Bakalova NG, Kolev DN. Catalytically important amino acid residues in endoglucanases from a mutant strain Trichoderma sp. M7. BIOCHEMISTRY (MOSCOW) 2006; 71 Suppl 1:S25-30. [PMID: 16487064 DOI: 10.1134/s0006297906130049] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Two endoglucanases, EG-III (49.7 kD) and EG-IV (47.5 kD), from a mutant strain Trichoderma sp. M7 were modified with several specific reagents. Water-soluble carbodiimide completely inactivated only one of the purified endoglucanases and kinetic analysis indicated that at least two molecules of carbodiimide bind to EG-IV for inactivation. The reaction followed pseudo-first-order kinetics with a second-order rate constant of 3.57 x 10(-5) mM(-1) x in(-1). Both endoglucanases were inhibited by iodoacetamide, but the absence of substrate protection excluded direct involvement of cysteine residues in the catalysis. N-Bromosuccinimide (NBS) showed a strong inhibitory effect on both endoglucanases, suggesting that tryptophan residues are essential for the activity and binding to the substrate, since the presence of substrates or analogs prior to NBS modification protected the enzymes against inactivation.
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Affiliation(s)
- S D Petrova
- Department of Biochemistry, Faculty of Biology, University of Sofia St. Kliment Ohridski, Sofia, 1164 Bulgaria.
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Lo Leggio L, Larsen S. The 1.62 A structure of Thermoascus aurantiacus endoglucanase: completing the structural picture of subfamilies in glycoside hydrolase family 5. FEBS Lett 2002; 523:103-8. [PMID: 12123813 DOI: 10.1016/s0014-5793(02)02954-x] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The crystal structure of Thermoascus aurantiacus endoglucanase (Cel5A), a family 5 glycoside hydrolase, has been determined to 1.62 A resolution by multiple isomorphous replacement with anomalous scattering. It is the first report of a structure in the subfamily to which Cel5A belongs. Cel5A consists solely of a catalytic module with compact eight-fold beta/alpha barrel architecture. The length of the tryptophan-rich substrate binding groove suggests the presence of substrate binding subsites -4 to +3. Structural comparison shows that two glycines are completely conserved in the family, in addition to the two catalytic glutamates and six other conserved residues previously identified. Gly 44 in particular is part of a type IV C-terminal helix capping motif, whose disruption is likely to affect the position of an essential conserved arginine. One aromatic residue (Trp 170 in Cel5A), not conserved in term of sequence, is nonetheless spatially conserved in the substrate binding groove. Its role might be to force the bend that occurs in the polysaccharide chain on binding, thus favoring substrate distortion at subsite -1.
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Affiliation(s)
- Leila Lo Leggio
- Centre for Crystallographic Studies, Department of Chemistry, Chemical Institute, University of Copenhagen, Universitetsparken 5, DK-2100, Copenhagen, Denmark.
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Christakopoulos P, Nerinckx W, Kekos D, Macris B, Claeyssens M. Purification and characterization of two low molecular mass alkaline xylanases from Fusarium oxysporum F3. J Biotechnol 1996; 51:181-9. [PMID: 8987884 DOI: 10.1016/0168-1656(96)01619-7] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Two low molecular mass endo-1,4-beta-D-xylanases from Fusarium oxysporum were purified to homogeneity by gel-filtration and ion-exchange chromatography. They exhibit molecular masses of 20.8 (xylanase I) and 23.5 (xylanase II) kDa, and isoelectric points of 9.5 and 8.45-8.70, respectively. Both xylanases display remarkable pH (9.0) stability. At 40 to 55 degrees C xylanase II is more thermostable than xylanase I but less active on xylan. In contrast to xylanase I, xylanase II is able to hydrolyze 1-O-4-methylumbelliferyl-beta-D-glucopyranosyl)-beta-D-xylopyranoside (muxg). Neither of these enzymes hydrolyze xylotriose. They bind on crystalline cellulose but not on insoluble xylan. Analysis of reaction mixtures by high pressure liquid chromatography revealed that both enzymes cleave preferentially the internal glycosidic bonds of xylopentaose and oat spelts xylan. Thus the purified enzymes appeared to be true endo-beta-1,4-xylanases. The amino terminal sequences of xylanases I and II show to homology. Xylanase I shows high similarity with alkaline low molecular mass xylanases of family G/11.
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Affiliation(s)
- P Christakopoulos
- Department of Biochemistry, Physiology and Microbiology, Faculty of Sciences, University of Gent, Belgium.
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Abstract
Plant cells are caged within a distended polymeric network (the cell wall), which enlarges by a process of stress relaxation and slippage (creep) of the polysaccharides that make up the load-bearing network of the wall. Protein mediators of wall creep have recently been isolated and characterized. These proteins, called expansins, appear to disrupt the noncovalent adhesion of matrix polysaccharides to cellulose microfibrils, thereby permitting turgor-driven wall enlargement. Expansin activity is specifically expressed in the growing tissues of dicotyledons and monocotyledons. Sequence analysis of cDNAs indicates that expansins are novel proteins, without previously known functional motifs. Comparison of expansin cDNAs from cucumber, pea, Arabidopsis and rice shows that the proteins are highly conserved in size and amino acid sequence. Phylogenetic analysis of expansin sequences suggests that this multigene family diverged before the evolution of angiosperms. Speculation is presented about the role of this gene family in plant development and evolution.
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Affiliation(s)
- D J Cosgrove
- Department of Biology, 208 Mueller Laboratory, Penn State University, University Park, PA 16802, USA.
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