Chemical and photochemical generated carbon-centered radical intermediate and its reaction with desoxyribonucleic acid

Direct Kinetics and Product Measurement of Phenyl Radical + Ethylene

The phenyl + ethylene (C₆H₅ + C₂H₄) reaction network was explored experimentally and theoretically to understand the temperature dependence of the reaction kinetics and product distribution under various temperature and pressure conditions. The flash photolysis apparatus combining laser absorbance spectroscopy (LAS) and time-resolved molecular beam mass spectrometry (MBMS) was used to study reactions on the C₈H₉ potential energy surface (PES). In LAS experiments, 505.3 nm laser light selectively probed C₆H₅ decay, and we measured the total C₆H₅ consumption rate coefficients in the intermediate temperature region (400–800 K), which connects previous experiments performed in high-temperature (pyrolysis) and low-temperature (cavity-ring-down methods) regions. From the quantum chemistry calculations by Tokmakov and Lin using the G2M(RCC5)//B3LYP method, we constructed a kinetic model and estimated phenomenological pressure-dependent rate coefficients, k(T, P), with the Arkane package in the reaction mechanism generator. The MBMS experiments, performed at 600–800 K and 10–50 Torr, revealed three major product peaks: m/z = 105 (adducts, mostly 2-phenylethyl radical, but also 1-phenylethyl radical, ortho-ethyl phenyl radical, and a spiro-fused ring radical), 104 (styrene, co-product with a H atom), and 78 (benzene, co-product with C₂H₃ radical). Product branching ratios were predicted by the model and validated by experiments for the first time. At 600 K and 10 Torr, the yield ratio of the H-abstraction reaction (forming benzene + C₂H₃) is measured to be 1.1% and the H-loss channel (styrene + H) has a 2.5% yield ratio. The model predicts 1.0% for H-abstraction and 2.3% for H-loss, which is within the experimental error bars. The branching ratio and formation of styrene increase at high temperature due to the favored formally direct channel (1.0% at 600 K and 10 Torr, 5.8% at 800 K and 10 Torr in the model prediction) and the faster β-scission reactions of C₈H₉ isomers. The importance of pressure dependence in kinetics is verified by the increase in the yield of the stabilized adduct from radical addition from 80.2% (800 K, 10 Torr) to 88.9% (800 K, 50 Torr), at the expense of styrene + H. The pressure-dependent model developed in this work is well validated by the LAS and MBMS measurements and gives a complete picture of the C₆H₅ + C₂H₄ reaction.

Reaction Dynamics on the Formation of Styrene: A Crossed Molecular Beam Study of the Reaction of Phenyl Radicals with Ethylene

The reaction dynamics of phenyl radicals (C6H5) with ethylene (C2H4) and D4-ethylene (C2D4) were investigated at two collision energies of 83.6 and 105.3 kJ mol-1 utilizing a crossed molecular beam setup. The experiments suggested that the reaction followed indirect scattering dynamics via complex formation and was initiated by an addition of the phenyl radical to the carbon-carbon double bond of the ethylene molecule forming a C6H5CH2CH2 radical intermediate. Under single collision conditions, this short-lived transient species was found to undergo unimolecular decomposition via atomic hydrogen loss through a tight exit transitions state to synthesize the styrene molecule (C6H5C2H3). Experiments with D4-ethylene verified that in the corresponding reaction with ethylene the hydrogen atom was truly emitted from the ethylene unit but not from the phenyl moiety. The overall reaction to form styrene plus atomic hydrogen from the reactants was found to be exoergic by 25 +/- 12 kJ mol(-1). This study provides solid evidence that in combustion flames the styrene molecule, a crucial precursor to form polycyclic aromatic hydrocarbons (PAHs), can be formed within a single neutral-neutral collision, a long-standing theoretical prediction which has remained to be confirmed by laboratory experiments under well-defined single collision conditions for the last 50 years.

Kinetic studies on veratryl alcohol transformation by horseradish peroxidase

A number of peroxidases, such as lignin peroxidase and manganese peroxidase have proved to be useful for industrial applications. Some studies on the effects of temperature and pH stability have been carried out. It is known that veratryl alcohol increases their stability in the range 28-50 degrees C and is oxidized, leading to veratryl aldehyde formation. Similar results with horseradish peroxidase (HRP) in the presence of cofactors were found, but the oxidation of veratryl alcohol in the absence of cofactors was extremely labile at acid pH and inactivated in a few minutes. Considering the growing industrial application of HRP, knowledge of its stability and denaturation kinetics is required. In this study, horseradish peroxidase pool (HRP-VI) and its isoenzymes HRP-VIII (acid) and HRP-IX (basic) have been shown to catalyze the oxidation of veratryl alcohol to veratryl aldehyde in the presence of hydrogen peroxide at pH 5.8 in the 35-45 degrees C range and in the absence of any cofactors. Heat and pH denaturation experiments in the presence and absence of veratryl alcohol incubation were conducted with HRP-VI and HRP-IX isoenzymes. HRP-IX was the most active isoenzyme acting on veratryl alcohol but HRP-VI was the most stable for the temperature range tested. At 35 degrees C the HRP pool presented decay constant (Kd) values of 5.5 x 10(-2) h(-1) and 1.4 10(-2) h(-1) in the absence and presence of veratryl alcohol, respectively, with an effective ratio of 3.9. These results present a new feature of peroxidases that opens one more interesting application of HRP to industrial processes.

Different DNA damaging species as a result of oxidation of n-butyraldehyde and iso-butyraldehyde by Cu(II)

The isomers n- and iso-butyraldehyde (BuA) in combination with Cu(II) induced single and double strand breaks in PM2 DNA, whereas the aldehydes, or Cu(II) alone had only negligible effect. The DNA damage was the result of radical oxidations of the aldehydes under formation of Cu(I). Cu(I) formation was independent of molecular oxygen. Extensive DNA degradation was only observed in the presence of molecular oxygen. Characterization of DNA damage pointed to different ultimate DNA damaging species. While catalase and neocuproine inhibited strand break formation induced by iso-BuA/Cu(II) to a high degree, these inhibitors were less effective in the n-BuA/Cu(II) reaction. On the other hand, sodium azide showed a high strand break inhibition in the n-BuA/Cu(II) reaction, but low inhibition in the iso-BuA/Cu(II) reaction. 2-Deoxyguanosine was hydroxylated in the 8-position by iso-BuA/Cu(II) but little reaction occurred with n-BuA/Cu(II). Chemiluminescence was detected during both BuA/Cu(II) reactions, whereby the intensity of the luminescence signal was 3.5-fold higher for n-BuA/Cu(II) than for iso-BuA/Cu(II). We suppose that the copper(II)-driven oxidation of n- and iso-BuA proceeds via different pathways with different DNA damaging consequences. Whereas the oxidation of iso-BuA mainly results in damage by .OH-radicals, the oxidation of n-BuA may lead to a radical reaction chain whereby excited states are involved and the resulting DNA-damaging species are not .OH-radicals.