Microbially-induced Carbonate Precipitation for Immobilization of Toxic Metals

Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation

SUMMARYFungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose, degrade, and otherwise transform a massive range of organic and inorganic substances, including plant organic matter, rocks, and minerals, underpin their major significance as biodeteriogens in the built environment and of cultural heritage. Fungi are often the most obvious agents of cultural heritage biodeterioration with effects ranging from discoloration, staining, and biofouling to destruction of building components, historical artifacts, and artwork. Sporulation, morphological adaptations, and the explorative penetrative lifestyle of filamentous fungi enable efficient dispersal and colonization of solid substrates, while many species are able to withstand environmental stress factors such as desiccation, ultra-violet radiation, salinity, and potentially toxic organic and inorganic substances. Many can grow under nutrient-limited conditions, and many produce resistant cell forms that can survive through long periods of adverse conditions. The fungal lifestyle and chemoorganotrophic metabolism therefore enable adaptation and success in the frequently encountered extremophilic conditions that are associated with indoor and outdoor cultural heritage. Apart from free-living fungi, lichens are a fungal growth form and ubiquitous pioneer colonizers and biodeteriogens of outdoor materials, especially stone- and mineral-based building components. This article surveys the roles and significance of fungi in the biodeterioration of cultural heritage, with reference to the mechanisms involved and in relation to the range of substances encountered, as well as the methods by which fungal biodeterioration can be assessed and combated, and how certain fungal processes may be utilized in bioprotection.

Microbial induced carbonate precipitation for remediation of heavy metals, ions and radioactive elements: A comprehensive exploration of prospective applications in water and soil treatment

Improper disposal practices have caused environmental disruptions, possessing by heavy metal ions and radioactive elements in water and soil, where the innovative and sustainable remediation strategies are significantly imperative in last few decades. Microbially induced carbonate precipitation (MICP) has emerged as a pioneering technology for remediating contaminated soil and water. Generally, MICP employs urease-producing microorganisms to decompose urea (NH2CONH2) into ammonium (NH4+and carbon dioxide (CO2), thereby increasing pH levels and inducing carbonate precipitation (CO32-), and effectively removing remove contaminants. Nonetheless, the intricate mechanism underlying heavy metal mineralization poses a significant challenge, constraining its application in contaminants engineering, particularly in the context of prolonged heavy metal leaching over time and its efficacy in adverse environmental conditions. This review provides a comprehensive idea of recent development of MICP and its application in environmental engineering, examining metabolic pathways, mineral precipitation mechanisms, and environmental factors as well as providing future perspectives for commercial utilization. The use of ureolytic bacteria in MICP demonstrates cost-efficiency, environmental compatibility, and successful pollutant abatement over tradition bioremediation techniques, and bio-synthesis of nanoparticles. limitations such as large-scale application, elevated Ca2+levels in groundwater, and gradual contaminant release need to be overcome. The possible future research directions for MICP technology, emphasizing its potential in conventional remediation, CO2 sequestration, bio-material synthesis, and its role in reducing environmental impact for long-term economic benefits.

Removal of cadmium and arsenic from water through biomineralization

Due to anthropogenic activities, heavy metals such as cadmium (Cd) and arsenic (As) are one of the most toxic xenobiotics contaminating water, thus affecting human health and the environment. The objective of the present investigation was to study the effect of ureolytic bacteria Bacillus paramycoides-MSR1 for the bioremediation of Cd and As from contaminated water. The B. paramycoides showed high resistance to heavy metals, Cd and As, with minimum inhibitory concentration (MIC) of 12.84 μM and 48.54 μM, respectively. The urease activity and calcium carbonate (CaCO3) precipitation were evaluated in artificial wastewater with different concentrations of Cd (0, 10, 20, 30, 40, 50, and 60 μM) and As (0, 20, 40, 60, 80, and 100 μM). The maximum urease activity in Cd-contaminated artificial wastewater was observed after 96 hours, which showed a 76.1% decline in urease activity as the metal concentration increased from 0 to 60 μM. Similarly, 14.1% decline in urease activity was observed as the concentration of As was increased from 0 to 100 μM. The calcium carbonate precipitation at the minimum inhibitory concentration of Cd and As-contaminated artificial wastewater was 189 and 183 mg/100 ml, respectively. The percentage removal of metal from artificially contaminated wastewater with varied concentrations was analyzed using atomic absorption spectroscopy (AAS). After 168 hours of incubation, 93.13% removal of Cd and 94.25% removal of As were observed. Microstructural analysis proved the presence of calcium carbonate in the form of calcite, confirming removal of cadmium and arsenic by microbially induced calcium carbonate precipitation (MICCP) to be promising technique for water decontamination.

Fungal biorecovery of cerium as oxalate and carbonate biominerals

Cerium is the most sought-after rare earth element (REE) for application in high-tech electronic devices and versatile nanomaterials. In this research, biomass-free spent culture media of Aspergillus niger and Neurospora crassa containing precipitant ligands (oxalate, carbonate) were investigated for their potential application in biorecovery of Ce from solution. Precipitation occurred after Ce3+ was mixed with biomass-free spent culture media and >99% Ce was recovered from media of both organisms. SEM showed that biogenic crystals with distinctive morphologies were formed in the biomass-free spent medium of A. niger. Irregularly-shaped nanoparticles with varying sizes ranging from 0.5 to 2 μm and amorphous biominerals were formed after mixing the carbonate-laden N. crassa supernatant, resulting from ureolysis of supplied urea, with Ce3+. Both biominerals contained Ce as the sole metal, and X-ray diffraction (XRD) and thermogravimetric analyses identified the biominerals resulting from the biomass-free A. niger and N. crassa spent media as cerium oxalate decahydrate [Ce2(C2O4)3·10H2O] and cerium carbonate [Ce2(CO3)3·8H2O], respectively. Thermal decomposition experiments showed that the biogenic Ce oxalates and carbonates could be subsequently transformed into ceria (CeO2). FTIR confirmed that both amorphous and nanoscale Ce carbonates contained carbonate (CO32-) groups. FTIR-multivariate analysis could classify the biominerals into three groups according to different Ce concentrations and showed that Ce carbonate biominerals of higher purity were produced when precipitated at higher Ce3+ concentrations. This work provides new understanding of fungal biotransformations of soluble REE species and their biorecovery using biomass-free fungal culture systems and indicates the potential of using recovered REE as precursors for the biosynthesis of novel nanomaterials.

Soil heavy metal pollution from Pb/Zn smelting regions in China and the remediation potential of biomineralization

Smelting activities pose serious environmental problems due to the local and regional heavy metal pollution in soils they cause. It is therefore important to understand the pollution situation and its source in the contaminated soils. In this paper, data on heavy metal pollution in soils resulting from Pb/Zn smelting (published in the last 10 years) in China was summarized. The heavy metal pollution was analyzed from a macroscopic point of view. The results indicated that Pb, Zn, As and Cd were common contaminants that were present in soils with extremely high concentrations. Because of the extreme carcinogenicity, genotoxicity and neurotoxicity that heavy metals pose, remediation of the soils contaminated by smelting is urgently required. The primary anthropogenic activities contributing to soil pollution in smelting areas and the progressive development of accurate source identification were performed. Due to the advantages of biominerals, the potential of biomineralization for heavy metal contaminated soils was introduced. Furthermore, the prospects of geochemical fraction analysis, combined source identification methods as well as several optimization methods for biomineralization are presented, to provide a reference for pollution investigation and remediation in smelting contaminated soils in the future.

Filamentous fungi for sustainable remediation of pharmaceutical compounds, heavy metal and oil hydrocarbons

This review presents a comprehensive summary of the latest research in the field of bioremediation with filamentous fungi. The main focus is on the issue of recent progress in remediation of pharmaceutical compounds, heavy metal treatment and oil hydrocarbons mycoremediation that are usually insufficiently represented in other reviews. It encompasses a variety of cellular mechanisms involved in bioremediation used by filamentous fungi, including bio-adsorption, bio-surfactant production, bio-mineralization, bio-precipitation, as well as extracellular and intracellular enzymatic processes. Processes for wastewater treatment accomplished through physical, biological, and chemical processes are briefly described. The species diversity of filamentous fungi used in pollutant removal, including widely studied species of Aspergillus, Penicillium, Fusarium, Verticillium, Phanerochaete and other species of Basidiomycota and Zygomycota are summarized. The removal efficiency of filamentous fungi and time of elimination of a wide variety of pollutant compounds and their easy handling make them excellent tools for the bioremediation of emerging contaminants. Various types of beneficial byproducts made by filamentous fungi, such as raw material for feed and food production, chitosan, ethanol, lignocellulolytic enzymes, organic acids, as well as nanoparticles, are discussed. Finally, challenges faced, future prospects, and how innovative technologies can be used to further exploit and enhance the abilities of fungi in wastewater remediation, are mentioned.

Immobilization of Cd2+ and Pb2+ by biomineralization of the carbonate mineralized bacterial consortium JZ1

Microbially induced carbonate precipitation (MICP) has been proven to effectively immobilize Cd²⁺ and Pb²⁺ using a single bacterium. However, there is an urgent need for studies of Cd²⁺ and Pb²⁺ immobilized by a bacterial consortium. In this study, a stable consortium designated JZ1 was isolated from soil that was contaminated with cadmium and lead, and the dominant genus Sporosarcina (99.1%) was found to have carbonate mineralization function. The results showed that 91.52% and 99.38% of Cd²⁺ and Pb²⁺ were mineralized by the consortium JZ1 with 5 g/L CaCl₂ at an initial concentration of 5 mg/L Cd²⁺ and 150 mg/L Pb²⁺, respectively. The bioprecipitates were characterized using X-ray diffraction (XRD), Fourier-transform infrared spectroscopy (FTIR), scanning electron microscopy (SEM), and energy dispersive X-ray spectroscopy (EDS). Moreover, the kinetic studies indicated that the urea hydrolysis reaction fit well with the Michaelis-Menten equation, and the kinetic parameters K_m and V_max were estimated to be 38.69 mM and 58.98 mM/h, respectively. When the concentration of urea increased from 0.1 to 0.3 M, the mineralization rate increased by 1.58-fold. This study can provide a novel microbial resource for the biomineralization of Cd and Pb in soil and water environments.

Recent advancements in cadmium-microbe interactive relations and their application for environmental remediation: a mechanistic overview

The toxic and persistent nature of cadmium (Cd) in the environment has become a matter of concern with its drastic increase in the concentrations over past few decades. Among the various techniques, the microbial remediation has been accepted as an effective decontamination tool for environmental applications, which is sustainable over a period of time. The Cd decontamination potential of the microbes depends on various internal and external factors that play a crucial role in selection of the microbes for application in a particular environment. Thus, it is important to understand the role of these factors for optimal application of the microbes. This study provides an insight into the mechanisms involved between the microbes and the environmental Cd. The study also briefly reviews the mathematical models that have been used to predict the remediation potential of the microbes and the kinetics involved during the process. A critical analysis of the recent advancements in the techniques for use of bacteria, fungi, and algal cells to remove Cd has been also presented in the manuscript.

The fate of Cd during the replacement of Cd-bearing calcite by calcium phosphate minerals

Carbonate-bound speciation is a critical sink of potentially toxic elements (PTEs) like cadmium (Cd) in soil and sediment. In a phosphate-rich environment, carbonate minerals could be replaced by phosphate minerals such as dicalcium phosphate dihydrate (DCPD, also known as brushite), octacalcium phosphate (OCP), and hydroxylapatite (HAP). Currently, it is unclear the migration and fate of PTEs during the replacement of PTEs-bearing carbonates by HAP and related intermediate minerals. Therefore, we synthesized Cd-bearing calcite by the coprecipitation method and converted it to DCPD, OCP, and HAP to investigate the redistribution and fate of Cd. The results showed that Cd incorporation in calcite significantly inhibited their replacement by DCPD and OCP, respectively. 1.26% of Cd in calcite was released into the solution when DCPD replaced calcite, and subsequently, most of the released Cd was recaptured by OCP. Significantly, the released Cd was below 0.05‰ when all the solid converted to HAP. These results suggested that with the application of phosphate fertilizer in alkaline soil, the secondary calcium phosphate minerals could control the environmental behavior of Cd.

Effect of microbially induced calcium carbonate precipitation treatment on the solidification and stabilization of municipal solid waste incineration fly ash (MSWI FA) - Based materials incorporated with metakaolin

Microbially induced calcium carbonate precipitation (MICP) has been considered as a potential treatment method for the solidification and stabilization of municipal solid waste incineration fly ash (MSWI-FA).The main obstacle for MICP treatment of MSWI-FA is the harsh environment which causes the bacteria fail to maintain their urease activity effectively, thus decreases the solidification effect and material properties. Currently, there is no research on blending metakaolin (MK) as a protective carrier for the bacteria into the MSWI-FA. The effect of the MICP process on the curing properties of MSWI FA-based cementing materials in the MK and MSWI-FA reaction system is largely unknown. In this study, different mixing ratios of MK were used to adjust the Ca/Si/Al ratio in the mixture, and the properties of the cementing material (MSWI-FA mixed with MK and water) and the MICP-treated material (MSWI-FA mixed with MK and bacterial solution) were investigated. This study contributes to find suitable additives to promote effect of MICP on the solidification of MSWI-FA and the improvement of material properties. The results showed when the mixing ratio of MSWI FA was 90 wt %, the MICP treatment was able to increase the compressive strength of the samples up to 0.99 Mp, and the compressive strength of samples reached 1.46 MPa, when the mixing ratio of MSWI FA was 80 wt %. Though the metakaolin did not show inhibitory effect on the urease activity, the compressive strength of the MICP-treated samples did not further show a significant increase when the mixture of MK was increased from 20 wt% to 30 wt%. Further investigation suggested that MICP activities of bacteria utilizing calcium sources could have an impact on the formation/deformation of calcium-containing hydration products in the reaction system, thus affecting the mechanical and chemical properties of MSWI based materials. MICP treatment is effective in the immobilization of certain heavy metals of MSWI FA, especially for Pb, Cd and Zn. This research shows the potential of using MICP to treat the MSWI fly ash, meanwhile, it is necessary to find suitable reaction system with the proper additives in order to further improve the properties of the MSWI FA based material in terms of mechanical performance.

Lead oxalates in some Chinese leafy vegetable cultivation: their biomineralization and remediation by oxalate degrading Streptomyces sp

Heavy metal contamination is a global threat with far-reaching effects for both human health and the environment. Biological agents, such as plants and microorganisms, provide uncomplicated and eco-friendly ways of removing toxic metals; thus, they are regarded as successful and alternative tools. In this study, we evaluated the ability of Streptomyces NJ10 (SN10), an oxalotrophic bacterium with outstanding oxalate metabolizing potential, to convert toxic lead oxalate (PbOx) into lead carbonate (PbCO3). SN10 was therefore used to determine the reduction of toxicity of Chinese leafy vegetables grown in the presence of PbOx in the soil. When compared to control, SN10 treated pots showed improved plant growth characters, i.e. shoot length (5.85 ± 0.56 cm), average leaf area (5.5 ± 0.44 cm2) and root length (7.2 ± 0.45 cm), as established by the plant growth attributes and the results obtained are statistically significant (at P ≤ 0.05) (for a period of 30 days). Furthermore, X-ray diffraction (XRD) and Scanning Electronic Microscopy-Energy-Dispersive X-ray Spectroscopy (SEM-EDS) studies revealed that PbOx was successfully transformed into a less toxic, water-insoluble precipitate of Pb-bearing carbonate, Phosgenite. The results provided a new idea for the biotransformation and toxicity mitigation of Pb contamination in soil.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13205-022-03353-6.

Microbial-induced carbonate precipitation prevents Cd2+ migration through the soil profile

Cadmium (Cd)-containing wastewater has been used to irrigate agricultural land. However, long term usage has resulted in the accumulation of Cd in the soil systems, which can eventually leach into the aquifer, contaminating groundwater. Microbial-induced carbonate precipitation (MICP), an economical and effective method, was used to block the in situ migration of Cd²⁺ in the soil profile. The results of the laboratory experiments showed that the maximum Cd²⁺ adsorption capacity of the soil exposed to MICP (8.92 mg/g) was higher than that of soil without MICP (7.12 mg/g). The Thomas model provided a good fit for the Cd²⁺ migration process in soil exposed to MICP (R² > 0.96), and Cd²⁺ was trapped more effectively by soil exposed to MICP than by soil alone. Further testing showed that the Cd²⁺ retention time in the MICP soil column increased with increasing soil urea content and pH but decreased with increasing flow rate. Soil physico-chemical properties showed that the MICP process increased the soil particle size and Cd capacity and decreased the proportion of exchangeable Cd in the soil. Scanning electron microscopy and X-ray diffraction analyses confirmed the generation of CdCO₃ in the MICP soil column. The findings of this study indicate that MICP can be effectively used to immobilize Cd²⁺ and prevent its migration in the soil profile.

Immobilization of heavy metals by microbially induced carbonate precipitation using hydrocarbon-degrading ureolytic bacteria

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Heavy metal toxicity to hydrocarbon-degrading ureolytic bacteria is Cd > Ni > Cr > Cu > Zn.

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The ureolytic bacteria can tolerate heavy metals and co-precipitate heavy metals.

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The precipitated minerals shifted between calcite and brushite depending on the heavy metal.

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The immobilization of heavy metals resulted in removal efficiency reaching 100%.

Crude oil contamination introduces multiple threats to human health and the environment, most of which are from toxic heavy metals. Heavy metals cause significant threats because of their persistence, toxicity, and bio-accumulation. Biomineralization, performed through many microbial processes, can lead to the immobilization of heavy metals in formed minerals. The potential of the microbially carbonate-induced precipitation (MICP) in removal by biomineralization of several heavy metals was investigated. A collection of diverse 11 bacterial strains exhibited ureolytic activity and tolerance to heavy metals when growing in Luria-Bertani (LB) and urea medium. Determination of the minimum inhibitory concentrations (MIC) revealed that heavy metal toxicity was arranged as Cd > Ni > Cr > Cu > Zn. Three hydrocarbon-degrading bacterial strains (two of Pseudomonas aeruginosa and one of Providencia rettgeri) exhibited the highest tolerance (MIC > 5 mM) to Cu, Cr, Zn, and Ni, whereas Cd exerted significantly higher toxicity with MIC <1 mM. At all MICP conditions, different proportions of calcium carbonate (calcite) and calcium phosphate (brushite) were formed. Pseudomonas aeruginosa strains (QZ5 and QZ9) exhibited the highest removal efficiency of Cr (100%), whereas Providencia rettgeri strain (QZ2) showed 100% removal of Zn. Heavy metal complexes were found as well. Cd removal was evidenced by the formation of cadmium phosphate induced by Providencia rettgeri bacterial activity. Our study confirmed that hydrocarbon-degrading ureolytic bacteria not only can tolerate heavy metal toxicity but also have the capability to co-precipitate heavy metals. These findings indicate an effective and novel biological approach to bioremediate petroleum hydrocarbons and immobilize multiple heavy metals with mineral formation. This is of high importance for ecological restoration via stabilization of soil and alleviation of heavy metal toxicity.

Enhanced immobilization of uranium(VI) during the conversion of microbially induced calcite to hydroxylapatite

Carbonate-bound uranium (U) is critical in controlling the migration of U in circumneutral to alkaline conditions. The potential release risk of carbonate-bound U should be concerned due to the contribution of mineral replacement. Herein, we explored the fate of U during the conversion process from microbial-induced calcite to hydroxylapatite (HAP) and investigated the phase and morphology evolution of minerals and the immobilization efficiency, distribution, and stability of U. The results showed that most calcite could convert to HAP during the conversion process. The aqueous residual U was below 1.0 mg/L after U-HAP formation, and the U removal efficiencies were enhanced by 20.0-74.4% compared to the calcite precipitation process. XRD and TEM results showed that the products were a mixture of HAP and uramphite. The elemental mapping results showed that most U concentrated on uramphite while a handful of U distributed homogeneously in calcite and HAP matrixes. The stability test verified that U-bearing HAP decreased the U solubility by 98-100% relative to calcite due to the uramphite formation and U incorporation into HAP. Our findings demonstrated that the combinations of microbial-induced calcite precipitation and calcite-HAP conversion could facilitate the U immobilization in treating radioactive wastewater and soil.

Microbial application in remediation of heavy metals: an overview

Heavy metal contamination poses a menacing threat to all living forms in the natural world due to its catastrophic consequences, contributing to environmental pollution. The need for human beings increasing each day along with anthropological activity is contributing directly to the destruction of the environment with the release of a large number of heavy metals into the food chain. These metals can be accumulated in the food chains and are very extremely toxic even at low concentrations. Heavy metals aggregation can deteriorate the healthy ecosystem of the water bodies as well. One of the major concerns is the diminution and administration of the heavy metals aggregating in marine water bodies and lakes. Heavy metals are not degradable and thus tend to remain in the environment for a prolonged time period. Heavy metal aggregation can demonstrate immediate repercussions such as DNA damage, inhibition of respiration and photosynthesis, and rapid reactive oxygen species generation. Conventional or standard chemical and physical methods for remediation of heavy metals are uneconomical and lead to the production of a large magnitude of chemical waste. This shifts the focus and interest towards the utilization of microbes in remediation of heavy metals from the environment which is eco-friendly and economical. To contend with heavy metals, microorganisms have a specific mechanism such as biotransformation, biosorption, and homeostasis. The microbial system is responsive to the toxicity that is created by the heavy metals which are easily water-soluble and available in the environment. The current review article describes the sources and effects of metal ions in the environment followed by bioremediation strategies followed in their remediation. Microbial approaches in remediation of metal ions from extraterrestrial materials are depicted in the paper.

Fungal-induced CaCO3 and SrCO3 precipitation: a potential strategy for bioprotection of concrete

Biomineralization of CaCO₃ by microorganisms is a well-documented process considered applicable to concrete self-healing and metal bioremediation. Urea hydrolysis is the most widely explored and efficient pathway regarding concrete bioprotection. However, the potential of fungi has received relatively little attention compared to bacteria. In this work, we show that Fusarium cerealis, Phoma herbarum and Mucor hiemalis, isolated from concrete, could produce 828.6-941.3 mg L^-1 ammonium‑nitrogen in liquid media through urea hydrolysis indicating significant urease activity, and could grow in moderate (pH 8.3) or even extremely alkaline (pH 10.6) conditions. After culture in media containing 50 mM CaCl₂, at least 48.8% Ca²⁺ was removed from solution by the selected fungi as calcite. The accumulation of Ca by the biomass was around 83.64-114.21 mg g^-1. In addition, all fungi could mediate strontium carbonate formation with F. cerealis processing the highest ability for Sr removal, with ~61% added Sr being removed from solution. Scanning electron microscopy showed carbonate biominerals were encrusted on hyphae or aggregated in fungal pellets. When equivalent concentrations of Ca²⁺ and Sr²⁺ were supplemented to the media, CaCO₃ with incorporated Sr formed with F. cerealis and M. hiemalis, and Sr(Sr, Ca)(CO₃)₂ with P. herbarum. Our results demonstrate the potential of fungi in providing carbonate coatings for concrete surfaces and simultaneous immobilization of Sr. We anticipate our work will promote further practical field research on porous cementitious materials protection by fungi and immobilization of potentially toxic metals from metal-laden ingredients, such as fly ash and granulated ground blast furnace slag.

Brevundimonas diminuta isolated from mines polluted soil immobilized cadmium (Cd2+) and zinc (Zn2+) through calcium carbonate precipitation: Microscopic and spectroscopic investigations

The toxic metal(loid)s TMs resistant bacterium Brevundimonas diminuta was isolated for the first time from mines polluted soil in Fengxian, China, and assessed for its potential for Cd and Zn precipitation in Cd and Zn co-contaminated aqueous solution at various Cd and Zn levels (20, 40, 80, 160, and 200 mg L^-1), pH values (5, 6, 7, 8, and 9), and temperatures (20, 25, 30, and 35 °C). B. diminuta showed a high resistance to both Cd and Zn and was able to precipitate up to 99.2 and 99.7% of dissolved Cd and Zn respectively, at a pH of 7 and temperature of 30 °C. B. diminuta reduced the dissolved concentrations of Cd and Zn below the threshold levels in water. The 3D-EEM analysis revealed the presence of extracellular polymeric substances (EPS) such as tryptophan indicating bacterial growth under Cd/Zn stress. FTIR showed polysaccharides, CO₃^2-, CaCO₃, PO₄^3-, and proteins, which may enhance bacterial growth and metal precipitation. SEM-EDS confirmed the leaf-like and granular shape of the biological precipitation and reduction in the percent weight of TMs, which promoted the adhesion/adsorption of Cd²⁺, Zn²⁺, and Ca²⁺. Moreover, XRD analysis confirmed the precipitation of Cd, Zn, and Ca in the form of CdCO₃/Cd₃(PO₄)₂, ZnCO₃/ZnHPO₄/Zn₂(OH)PO₄/Zn₃(PO₄)₂, and CaCO₃/Ca₅(PO₃)₄OH, respectively. These findings indicate that Brevundimonas diminuta can be used for the bioremediation of TMs-contaminated aquatic environments.

A review on the applications of microbially induced calcium carbonate precipitation in solid waste treatment and soil remediation

Improper disposal and accumulation of solid waste can cause a number of environmental problems, such as the heavy metal contamination of soil. Microbially induced calcium carbonate precipitation (MICP) is considered as a promising technology to solve many environmental problems. Calcium-based solid waste can be utilized as an alternative source of calcium for the MICP process, and carbonate-based biominerals can be used for soil remediation, solid waste treatment, remediation of construction concrete, and generation of bioconcrete. This paper describes the metabolic pathways and mechanisms of microbially induced calcium carbonate precipitation and highlights the value of MICP for solid waste treatment and soil remediation applications. The factors affecting the effectiveness of MICP are discussed and analyzed through an overview of recent studies on the application of MICP in environmental engineering. The paper also summarizes the current challenges for the large-scale application of this innovative technology. In prospective study, MICP can be an effective alternative to conventional technologies in solid waste treatment, soil remediation and CO₂ sequestration, as it can reduce negative environmental impacts and provide long-term economic benefits.

Microbial Concrete-a Sustainable Solution for Concrete Construction

In the ever-increasing demand of construction and construction materials worldwide, concrete is the most extensively used material for construction purposes almost next to the water. Therefore, there is a dire need of clean, green and durable concrete. Recently, an environmentally friendly strategy has been employed to manufacture bio-concrete by the usage of microorganisms in the traditional concrete to enhance its durability and compressive strength. In this review, we discuss the role of microbes in influencing the various properties of concrete such as compressive strength, flexural strength and tensile strength by reducing the concrete porosity and diminishing water absorption. The mechanism of microbial-induced calcium carbonate precipitation (MICP) in the traditional concrete by the action of microbes which resulted in the formation of bio-concrete as an improved building material has also been discussed. Additionally, an in-depth comparative analysis of the performance of bio-concrete with the traditional concrete synthesized from various industrial wastes such as silica fume, rice husk ash and metakaolin in terms of different properties such as compressive strength, flexural strength and percentage water absorption has been presented. This review highlights the impact of usage of microbes in the conventional concrete to produce novel and eco-friendly bio-concrete in construction technology.

The Effect of Calcium Source on Pb and Cu Remediation Using Enzyme-Induced Carbonate Precipitation

Heavy metal contamination not only causes threat to human health but also raises sustainable development concerns. The use of traditional methods to remediate heavy metal contamination is however time-consuming, and the remediation efficiency may not meet the requirements as expected. The present study conducted a series of test tube experiments to investigate the effect of calcium source on the lead and copper removals. In addition to the test tube experiments, numerical simulations were performed using Visual MINTEQ software package considering different degrees of urea hydrolysis derived from the experiments. The remediation efficiency degrades when NH4+ and OH− concentrations are not sufficient to precipitate the majority of Pb2+ and Cu2+. It also degrades when CaO turns pH into highly alkaline conditions. The numerical simulations do not take the dissolution of precipitation into account and therefore overestimate the remediation efficiency when subjected to lower Pb(NO3)2 or Cu(NO3)2 concentrations. The findings highlight the potential of applying the enzyme-induced carbonate precipitation to lead and copper remediations.

Solubilization of struvite and biorecovery of cerium by Aspergillus niger

Cerium has many modern applications such as in renewable energies and the biosynthesis of nanomaterials. In this research, natural struvite was solubilized by Aspergillus niger and the biomass-free struvite leachate was investigated for its ability to recover cerium. It was shown that struvite was completed solubilized following 2 weeks of fungal growth, which released inorganic phosphate (Pi) from the mineral by the production of oxalic acid. Scanning electron microscopy (SEM) showed that crystals with distinctive morphologies were formed in the natural struvite leachate after mixing with Ce3+. Energy-dispersive X-ray analysis (EDXA), X-ray diffraction (XRD) and Fourier-transform infrared spectroscopy (FTIR) confirmed the formation of cerium phosphate hydrate [Ce(PO4)·H2O] at lower Ce concentrations and a mixture of phosphate and cerium oxalate decahydrate [Ce2(C2O4)3·10H2O] at higher Ce concentrations. The formation of these biogenic Ce minerals leads to the removal of > 99% Ce from solution. Thermal decomposition experiments showed that the biogenic Ce phosphates could be transformed into a mixture of CePO4 and CeO2 (cerianite) after heat treatment at 1000 °C. These results provide a new perspective of the fungal biotransformation of soluble REE species using struvite leachate, and also indicate the potential of using the recovered REE as biomaterial precursors with possible applications in the biosynthesis of novel nanomaterials, elemental recycling and biorecovery. KEY POINTS: • Cerium was recovered using a struvite leachate produced by A. niger. • Oxalic acid played a major role in struvite solubilization and Ce phosphate biorecovery. • Resulting nanoscale mineral products could serve as a precursor for Ce oxide synthesis.

Recent Progress and Prospects in Catalytic Water Treatment

Presently, conventional technologies in water treatment are not efficient enough to completely mineralize refractory water contaminants. In this context, the implementation of catalytic processes could be an alternative. Despite the advantages provided in terms of kinetics of transformation, selectivity, and energy saving, numerous attempts have not yet led to implementation at an industrial scale. This review examines investigations at different scales for which controversies and limitations must be solved to bridge the gap between fundamentals and practical developments. Particular attention has been paid to the development of solar-driven catalytic technologies and some other emerging processes, such as microwave assisted catalysis, plasma-catalytic processes, or biocatalytic remediation, taking into account their specific advantages and the drawbacks. Challenges for which a better understanding related to the complexity of the systems and the coexistence of various solid-liquid-gas interfaces have been identified.

Copper mine tailings valorization using microbial induced calcium carbonate precipitation

The solidification of copper mine tailings was investigated by using the natural biological process known as microbial induced calcium carbonate precipitation (MICP) as a potential method to valorize this waste stream. A submergent method was used to grow bio-columns and the toxicity of copper on Sporosarcina pasteurii (the ureolytic bacteria which drives the MICP process) was investigated. The bio-columns produced from copper mine tailings had a compressive strength of 0.54 MPa, lower than bio-columns produced from beach sand (1.85 MPa). The low porosity of the copper mine tailings limited the depth to which the MICP reaction could successfully occur, resulting in a 1.8 mm ± 0.4 mm crust forming around the outer extremities of the bio-columns. The results demonstrated that the particle size was a key deciding factor and that, as a result, MICP is not suitable for producing 'thick' bio-cemented materials from small particles (<100 μm) such as mine tailings. However, this method could produce thinner material such as bio-tiles or it could even be used to potentially cement together toxic dust particles typically formed on mine tailing heaps.

Remediation of soil cadmium pollution by biomineralization using microbial-induced precipitation: a review

In recent years, with industrial pollution and the application of agricultural fertilizers with high cadmium (Cd) content, soil Cd pollution has become increasingly serious. A large amount of Cd is discharged into the environment, greatly endangering the stability of the ecological environment and human health. The use of microorganisms to induce Cd precipitation and mineralization is an important bioremediation method. Itis highly efficient, has a low cost, enables environmental protection, and convenient to operate. This article summarizes the pollution status, pollution source, biological toxicity and existing forms of Cd, as well as the biomineralization mechanism of microbial induced Cd(II) precipitation, mainly including microbial-induced carbonate precipitation, microbial-induced phosphate precipitation and microbial-induced sulfide precipitation. Factors affecting the bioremediation of Cd, such as pH, coexisting ions, and temperature, are introduced. Finally, the key points and difficulties of future microbe-induced Cd(II) biomineralization research are highlighted, providing a scientific basis and theoretical guidance for the application of microbe-induced Cd(II) immobilization in soil.

Influence of native ureolytic microbial community on biocementation potential of Sporosarcina pasteurii

Microbially induced calcium carbonate precipitation (MICP)/Biocementation has emerged as a promising technique for soil engineering applications. There are chiefly two methods by which MICP is applied for field applications including biostimulation and bioaugmentation. Although bioaugmentation strategy using efficient ureolytic biocementing culture of Sporosarcina pasteurii is widely practiced, the impact of native ureolytic microbial communities (NUMC) on CaCO₃ mineralisation via S. pasteurii has not been explored. In this paper, we investigated the effect of different concentrations of NUMC on MICP kinetics and biomineral properties in the presence and absence of S. pasteurii. Kinetic analysis showed that the biocementation potential of S. pasteurii is sixfold higher than NUMC and is not significantly impacted even when the concentration of the NUMC is eight times higher. Micrographic results revealed a quick rate of CaCO₃ precipitation by S. pasteurii leading to generation of smaller CaCO₃ crystals (5-40 µm), while slow rate of CaCO₃ precipitation by NUMC led to creation of larger CaCO₃ crystals (35-100 µm). Mineralogical results showed the predominance of calcite phase in both sets. The outcome of current study is crucial for tailor-made applications of MICP.

Microbiologically induced calcite precipitation technology for mineralizing lead and cadmium in landfill leachate

As a new bioremediation technology for toxic metals, microbiologically induced calcite precipitation (MICP) is gradually becoming a research focus. This study investigated the application of MICP to mineralize toxic metals (lead and cadmium) in landfill leachate for the first time. In the experiment of remediating synthetic landfill leachate (SLL) contaminated by Pb²⁺, 100% of the 20 mg/L Pb²⁺ was removed when the maximum urease activity was only 20.96 U/ml. Scanning electron microscopy and energy dispersive spectroscopy (SEM-EDS) and laser particle size characterizations of the precipitates indicate the formation of agglomerated square particles, 76.9% of which had sizes that ranged from 33.93 to 57.06 μm. Fourier transform infrared spectroscopic and X-ray diffraction analyses confirmed that the precipitates consisted predominantly of calcite crystals, and the unit cell lattice constants of the precipitates (a = b = 4.984 Å, c = 17.171 Å) matched those of calcite, while lead was fixed as hydrocerussite. In addition, the Pb-MICP precipitates were stable under continuous acid degradation (pH = 5.5), and only 1.76% of the lead was released after 15 days. In the verification test of toxic metals remediation in a real landfill leachate (RLL), all of the Pb²⁺ and Cd²⁺ (initial concentrations: Pb²⁺ = 25 mg/L; Cd²⁺ = 5.6205 mg/L) was mineralized simultaneously, which further confirmed the feasibility of MICP for toxic metal remediation in landfill leachate. However, optimizing the urea dosage and combining the ammonium recovery are necessary strategies required for improving the economic and environmental benefits of the MICP process.

Testing the Capacity of Staphylococcus equorum for Calcium and Copper Removal through MICP Process

This research focused on the evaluation of the potential use of a soil-isolated bacteria, identified as Staphylococcus equorum, for microbial-induced calcite precipitation (MICP) and copper removal. Isolated bacteria were characterized considering growth rate, urease activity, calcium carbonate precipitation, copper tolerance as minimum inhibitory concentration (MIC) and copper precipitation. Results were compared with Sporosarcina pasteurii, which is considered a model bacteria strain for MICP processes. The results indicated that the S. equorum strain had lower urease activity, calcium removal capacity and copper tolerance than the S. pasteurii strain. However, the culture conditions tested in this study did not consider the halophilic feature of the S. equorum, which could make it a promising bacterial strain to be applied in process water from mining operations when seawater is used as process water. On the other hand, copper removal was insufficient when applying any of the bacteria strains evaluated, most likely due to the formation of a copper–ammonia complex. Thus, the implementation of S. equorum for copper removal needs to be further studied, considering the optimization of culture conditions, which may promote better performance when considering calcium, copper or other metals precipitation.

Continuous and efficient immobilization of heavy metals by phosphate-mineralized bacterial consortium

Traditional sewage treatment technology cannot remove heavy metals, which needs to be improved urgently. Lysinibacillus with the function of bio-mineralization was screened and loaded on granular sludge to form a phosphate-mineralized bacterial consortium, which demonstrated the ability of self-regulating pH and automatic solid-liquid separation. Heavy metals could be fixed on the bacterial consortium to produce stable and harmless phosphate minerals. The highest removal efficiency of Pb(Ⅱ), Cd(Ⅱ), and Ni(Ⅱ) were 97.9%, 70%, and 40%, respectively. Organic matter and other metal ions in actual polluted water had little effect on the Pb(Ⅱ) removal efficiency. Mechanism analysis was conducted through 3D-EEM, XRD, SEM-EDS, XPS, FTIR, and high-throughput sequencing analyses. The bacterial consortium was a multi-species coexistence system, but Lysinibacillus played a major role in removing Pb(Ⅱ). C-O and O-H bonds of tyrosine and phosphorous organics were broken by enzyme catalysis and the metal-oxygen bond (Pb-O) was formed. Mineral crystals in the reactor accumulated, transforming from the initial phase non-crystalline structure to the metaphase Pb₃(PO₄)₂ and eventually to the Pb₅(PO₄)₃OH. This research obtained a promising technique for immobilizing Pb(Ⅱ) or other hazardous metals continuously and efficiently.

Forced Biomineralization: A Review

Biologically induced and controlled mineralization of metals promotes the development of protective structures to shield cells from thermal, chemical, and ultraviolet stresses. Metal biomineralization is widely considered to have been relevant for the survival of life in the environmental conditions of ancient terrestrial oceans. Similar behavior is seen among extremophilic biomineralizers today, which have evolved to inhabit a variety of industrial aqueous environments with elevated metal concentrations. As an example of extreme biomineralization, we introduce the category of "forced biomineralization", which we use to refer to the biologically mediated sequestration of dissolved metals and metalloids into minerals. We discuss forced mineralization as it is known to be carried out by a variety of organisms, including polyextremophiles in a range of psychrophilic, thermophilic, anaerobic, alkaliphilic, acidophilic, and halophilic conditions, as well as in environments with very high or toxic metal ion concentrations. While much additional work lies ahead to characterize the various pathways by which these biominerals form, forced biomineralization has been shown to provide insights for the progression of extreme biomimetics, allowing for promising new forays into creating the next generation of composites using organic-templating approaches under biologically extreme laboratory conditions relevant to a wide range of industrial conditions.

Immobilization and migration of arsenic during the conversion of microbially induced calcium carbonate to hydroxylapatite

Coprecipitation with calcium carbonate (CaCO₃) could decrease the bioavailability of arsenic (As). However, in a phosphate-rich environment, some CaCO₃ will be converted to hydroxylapatite (HAP). Currently, the behavior of carbonate-bound As during conversion is unclear. Therefore, we prepared bio-induced CaCO₃ in an As solution and converted it to HAP. The results showed that a high concentration of arsenate promoted vaterite precipitation and the conversion of CaCO₃ to HAP. The dissolution data verified the low solubility of As in HAP, though its As-bearing CaCO₃ precursor released up to 88.19% As during the conversion. Furthermore, HPLC-ICP-MS data showed partial oxidation of arsenite to arsenate, suggesting that CaCO₃ and HAP's structure favored the incorporation of arsenate. Our results demonstrated that the stability of heavy metal-bearing CaCO₃ should be considered, and the role of HAP in the immobilization of heavy metals such as As should not be overestimated.

Study on soil physical structure after the bioremediation of Pb pollution using microbial-induced carbonate precipitation methodology

Soil structure is an important index to evaluate soil quality; however, previous researchers have only paid attention to the effect and economic benefits of soil heavy metal remediation. In this study, microbial-induced carbonate precipitation (MICP) technology was used to remediate soil Pb pollution, and its effect on soil structure was studied by sieving and X-ray computed tomography techniques. The results showed that the leaching amount of heavy metals in soil decreased by 76.34% after remediation. Interestingly, due to the addition of organic matter and microorganisms, the soil particle size changed from microaggregates to large aggregates, and the large soil particle size (diameter > 2 mm) increased significantly by 71.43%. The soil porosity increased by 73.78%, which enhanced the soil permeability and increased the soil hydraulic conductivity. Therefore, MICP bioremediation not only remediated soil heavy metal pollution but also promoted the soil aggregation structure, which has important significance for soil remediation and improvement.

A preliminary study of solid-waste coal gangue based biomineralization as eco-friendly underground backfill material: Material preparation and macro-micro analyses

Solid-waste coal gangue (CG) mixed with cement as underground backfilling material is widely applied in coal mines throughout China. However, this material can pollute the environment during its production, preparation, and transportation, which is mainly caused by cement. As a cement-free eco-friendly technology, microbially induced carbonate precipitation (MICP) technology can produce biomineralization products to consolidate loose grains, and the microbial growth environment is adapted to underground temperature with no pollution. To this end, this study gets the Bacillus pasteurii with special resistance by strain domestication, proposes a CG-based bio-mineralized underground backfilling material without using cement, and analyses the characteristics of it from macro- to microscopic perspectives by dissolution test, scanning electron microscopy (SEM), Energy-dispersive spectroscopy (EDS) and X-ray diffraction (XRD). The results indicate that strain domestication leads to B. pasteurii, which can withstand CG leaching solution and 1 M urea simultaneously. This satisfies the basic requirements of CG based mineralized material. Through the circulation perfusion method, the intact CG based biomineralized specimens are obtained. Macroscopically, the bacteria bind gangue grains into a whole with high biomineral content (11.66%). The utilization rate of mineralizing solution is up to 66.82% which makes good use of raw materials. Microscopically, a new crystal formation is observed, and CG particles are consolidated well where the crystals precipitate to fill the pores and bind the particles together. Hence this method has a significant influence on the deposition of biominerals. Meanwhile the biomineralization improves the microstructure considerably and bonds the CG particles as a whole. A comprehensive analysis of the test results shows that, from an environment viewpoint, the preliminary study of new CG based bio-mineralized material is successful.

State-of-the-Art Review of the Applicability and Challenges of Microbial-Induced Calcite Precipitation (MICP) and Enzyme-Induced Calcite Precipitation (EICP) Techniques for Geotechnical and Geoenvironmental Applications

The development of alternatives to soil stabilization through mechanical and chemical stabilization has paved the way for the development of biostabilization methods. Since its development, researchers have used different bacteria species for soil treatment. Soil treatment through bioremediation techniques has been used to understand its effect on strength parameters and contaminant remediation. Using a living organism for binding the soil grains to make the soil mass dense and durable is the basic idea of soil biotreatment. Bacteria and enzymes are commonly utilized in biostabilization, which is a common method to encourage ureolysis, leading to calcite precipitation in the soil mass. Microbial-induced calcite precipitation (MICP) and enzyme-induced calcite precipitation (EICP) techniques are emerging trends in soil stabilization. Unlike conventional methods, these techniques are environmentally friendly and sustainable. This review determines the challenges, applicability, advantages, and disadvantages of MICP and EICP in soil treatment and their role in the improvement of the geotechnical and geoenvironmental properties of soil. It further elaborates on their probable mechanism in improving the soil properties in the natural and lab environments. Moreover, it looks into the effectiveness of biostabilization as a remediation of soil contamination. This review intends to present a hands-on adoptable treatment method for in situ implementation depending on specific site conditions.

MICP as a potential sustainable technique to treat or entrap contaminants in the natural environment: A review

In the last two decades, developments in the area of biomineralization has yielded promising results making it a potentially environmentally friendly technique for a wide range of applications in engineering and wastewater/heavy metal remediation. Microbially Induced Carbonate Precipitation (MICP) has led to numerous patented applications ranging from novel strains and nutrient sources for the precipitation of biominerals. Studies are being constantly published to optimize the process to become a promising, cost effective, ecofriendly approach when compared with the existing traditional remediation technologies which are implemented to solve multiple contamination/pollution issues. Heavy metal pollution still poses a major threat towards compromising the ecosystem. The removal of heavy metals is of high importance due to their recalcitrance and persistence in the environment. In that perspective, this paper reviews the current and most significant discoveries and applications of MICP towards the conversion of heavy metals into heavy metal carbonates and removal of calcium from contaminated media such as polluted water. It is evident from the literature survey that although heavy metal carbonate research is very effective in removal, is still in its early stages but could serve as a solution if the microorganisms are stimulated directly in the heavy metal environment.

Study on the simultaneous removal of fluoride, heavy metals and nitrate by calcium precipitating strain Acinetobacter sp. H12

The removal properties and mechanisms of fluoride (F^-) and nickel (Ni²⁺) were studied by biomineralizing bacteria (Acinetobacter sp. H12). The results showed that the removal ratio of F^-, Ca²⁺ and Ni²⁺ reached 75% (0.031 mg·L^-1·h^-1), 84.96% (2.123 mg·L^-1·h^-1), and 56.67% (0.024 mg·L^-1·h^-1) after 72 h, respectively. The removal ratio of nitrate (NO₃^-) reached 100% (0.686 mg·L^-1·h^-1) after 24 h. SEM and XRD images indicated that bioprecipitation of CaF₂, Ca₅(PO₄)₃F, Ca₅(PO₄)₃(OH), NiCO₃, CaCO₃ and Ni were formed, and some of these precipitation used bacteria as nucleation sites to form biological crystal seeds. N₂ was the primary product in gas chromatography analysis. Meanwhile, both the fluorescence spectroscopy and fourier transform near-infrared spectroscopy analysis proved that strain H12 had good ability to remove fluoride and nickel ions simultaneously.

Distinction between Cr and other heavy-metal-resistant bacteria involved in C/N cycling in contaminated soils of copper producing sites

For typical copper producing provinces of Heilongjiang, Henan, Inner Mongolia, Jiangxi, Shandong, Tibet, and Yunnan in China, 90 % of sampling sites were heavily polluted with multiple heavy metals. Soil heterogeneity and mutual interference of multimetals are obstacles to explore bacterial resistance pathways in contaminated field soils. Through analyses of contamination indices and bioindicators, combined with multivariate statistical models, the antioxidant enzyme activity, urease-induced precipitation of heavy metals, excretion of extracellular polymeric substances (EPS) were attributed to different types of heavy metals. Furthermore, through redundancy analysis combined with phylogenetic analysis of metal-resistant bacteria, we identified that Verrucomicrobia, Acidobacteria, and Planctomycetes secreted EPS-polysaccharides and EPS-proteins to detoxify Cr, a metal with lower concentrations and lower ecological risk as compared to other metals. The pathway was innovatively differentiated from the multimetal resistance pathways in urease and/or catalase-producing bacteria such as Proteobacteria, Firmicutes, BRC1, Bacteroidetes, Dadabacteria, Entotheonellaeota, Nitrospirae, and Gemmatimonadetes using field studies and high-throughput sequencing. Moreover, these metal-resistant bacteria were linked to C/N cycling processes of urea hydrolysis, nitrification, denitrification, EPS production, and calcite precipitation. It will provide new insight into soil bacterial resistance to multimetals in field studies.

Bacterial-induced mineralization (BIM) for soil solidification and heavy metal stabilization: A critical review

Solidification and stabilization (S/S) treatment via cement is common and effective for improving soil strength and stabilizing heavy metals in contaminated soils, but has certain drawbacks, such as high fossil energy consumption, big carbon footprint, poor chemical compatibility, and ambiguous long-term stability. This paper innovatively proposes bacterial-induced mineralization (BIM) as an eco-friendly and efficient S/S method. In the BIM-S/S treatment, life activities of bacteria produce minerals to cement the soil particles and fix the heavy metals. This review firstly summarizes the basic theories of BIM technology followed by the evaluation on remediation effects and long-term stability in terms of soil solidification and heavy metal stabilization. Then the factors in BIM-S/S application are reviewed. Emphasis is put on the comparison of the BIM-S/S effect with that of cement-based-S/S technology. It is concluded that BIM-S/S technology is promising with outstanding performance in sustainability. On the other hand, current limitations and deficiencies with this technology are identified finally, hereby the directions for future research are pointed to make a major advancement in the BIM-S/S technology.

Insights into the Current Trends in the Utilization of Bacteria for Microbially Induced Calcium Carbonate Precipitation

Nowadays, microbially induced calcium carbonate precipitation (MICP) has received great attention for its potential in construction and geotechnical applications. This technique has been used in biocementation of sand, consolidation of soil, production of self-healing concrete or mortar, and removal of heavy metal ions from water. The products of MICP often have enhanced strength, durability, and self-healing ability. Utilization of the MICP technique can also increase sustainability, especially in the construction industry where a huge portion of the materials used is not sustainable. The presence of bacteria is essential for MICP to occur. Bacteria promote the conversion of suitable compounds into carbonate ions, change the microenvironment to favor precipitation of calcium carbonate, and act as precipitation sites for calcium carbonate crystals. Many bacteria have been discovered and tested for MICP potential. This paper reviews the bacteria used for MICP in some of the most recent studies. Bacteria that can cause MICP include ureolytic bacteria, non-ureolytic bacteria, cyanobacteria, nitrate reducing bacteria, and sulfate reducing bacteria. The most studied bacterium for MICP over the years is Sporosarcina pasteurii. Other bacteria from Bacillus species are also frequently investigated. Several factors that affect MICP performance are bacterial strain, bacterial concentration, nutrient concentration, calcium source concentration, addition of other substances, and methods to distribute bacteria. Several suggestions for future studies such as CO₂ sequestration through MICP, cost reduction by using plant or animal wastes as media, and genetic modification of bacteria to enhance MICP have been put forward.

Heavy Metal Immobilization Studies and Enhancement in Geotechnical Properties of Cohesive Soils by EICP Technique

Soil treatment methods to cope with ever-growing demands of construction industry and environmental aspects are always explored for their suitability in different in-situ conditions. Of late, enzyme induced calcite precipitation (EICP) is gaining importance as a reliable technique to improve soil properties and for contaminant remediation scenarios. In the present work, swelling and permeability characteristics of two native Indian cohesive soils (Black and Red) are explored. Experiments on the sorption and desorption of multiple heavy metals (Cd, Ni and Pb) onto these soils were conducted to understand the sorptive response of the heavy metals. To improve the heavy metal retention capacity and enhance swelling and permeability characteristics, the selected soils were treated with different enzyme solutions. The results revealed that EICP technique could immobilize the heavy metals in selected soils to a significant level and reduce the swelling and permeability. This technique is contaminant selective and performance varies with the nature and type of heavy metal used. Citric acid (C6H8O7) and ethylene diamine tetra-acetic acid (EDTA) were used as extractants in the present study to study the desorption response of heavy metals for different EICP conditions. The results indicate that calcium carbonate (CaCO3) precipitate deposited in the voids of soil has the innate potential in reducing the permeability of soil up to 47-fold and swelling pressure by 4-fold at the end of 21 days of curing period. Reduction in permeability and swell, following EICP treatment can be maintained with one time rinsing of the treated soil in water to avoid dissolution of precipitated CaCO3. Outcomes of this study have revealed that EICP technique can be adopted on selected native soils to reduce swelling and permeability characteristics followed by enhanced contaminant remediation enabling their potential as excellent landfill liner materials.

Inhibition of urea hydrolysis by free Cu concentration of soil solution in microbially induced calcium carbonate precipitation

Urea hydrolysis is an initiating step of microbially induced calcium carbonate precipitation (MICP) which can be used as a stabilization technology in heavy metals contaminated soil. In this study, inhibition of urea hydrolysis was investigated in Cu-contaminated soil. At soil Cu concentration from 0 to 1000 mg/kg, the amount of urea hydrolyzed (i.e., initial urea 450 mM) ranged from 449.3 ± 1.4 to 10.5 ± 0.8 mM. Correspondingly, decrease in calcium carbonate precipitation was commensurate with the inhibition of urea hydrolysis. Interestingly, 2.75 times more urea were hydrolyzed in 350 days-aged soil than in freshly spiked soil even at the same soil Cu concentration of 250 mg/kg, suggesting the inhibitory effect of Cu in soil solution. Indeed, the concentrations of Cu in soil solution were 4.9 ± 0.1 and 21.0 ± 0.3 mg/L, respectively. Since MICP application involved an increase in Ca²⁺ concentration in soil, its effect was also determined. In the freshly spiked soil with 250 mg-Cu/kg, the Cu concentration in the soil solution increased from 7.6 ± 0.1 to 21.0 ± 0.3 mg/L as the calcium concentration increased from 0 to 450 mM. Accordingly, urea hydrolysis was significantly reduced from 217.5 ± 59.0 to 11.9 ± 0.2 mM. The effect of pH was also determined, showing that 32.8 ± 3.4 and 205.9 ± 32.5 mM of urea was hydrolyzed at soil pH of 4.5 and 7.8, respectively. The reason was attributed to the great difference in free Cu concentration in soil solution (i.e., 3.3 and 0.3 mg/L at pH 4.5 and 7.8, respectively). The relationship between amounts of urea hydrolyzed and free Cu concentrations was established and half-maximal inhibition concentration (IC₅₀) of free Cu concentration in soil solution was predicted to be 0.39 mg/L.

Divalent heavy metals and uranyl cations incorporated in calcite change its dissolution process

Due to the high capacity of impurities in its structure, calcite is regarded as one of the most attractive minerals to trap heavy metals (HMs) and radionuclides via substitution during coprecipitation/crystal growth. As a high-reactivity mineral, calcite may release HMs via dissolution. However, the influence of the incorporated HMs and radionuclides in calcite on its dissolution is unclear. Herein, we reported the dissolution behavior of the synthesized calcite incorporated with cadmium (Cd), cobalt (Co), nickel (Ni), zinc (Zn), and uranium (U). Our findings indicated that the HMs and U in calcite could significantly change the dissolution process of calcite. The results demonstrated that the incorporated HMs and U had both inhibiting and enhancing effects on the solubility of calcite, depending on the type of metals and their content. Furthermore, secondary minerals such as smithsonite (ZnCO3), Co-poor aragonite, and U-rich calcite precipitated during dissolution. Thus, the incorporation of metals into calcite can control the behavior of HMs/uranium, calcite, and even carbon dioxide.

Complete Genome Sequence of the Novel Psychrobacter sp. Strain AJ006, Which Has the Potential for Biomineralization

A novel Psychrobacter sp. strain, AJ006, was isolated from Antarctic soil. Its complete genome sequence consists of a single circular chromosome (3,032,533 bp; G+C content, 44.0%) and a single linear plasmid (49,070 bp; G+C content, 41.7%). Chromosomal genes encoding carbonic anhydrase and urease, key enzymes in a biomineralization process, were predicted.

A novel Psychrobacter sp. strain, AJ006, was isolated from Antarctic soil. Its complete genome sequence consists of a single circular chromosome (3,032,533 bp; G+C content, 44.0%) and a single linear plasmid (49,070 bp; G+C content, 41.7%). Chromosomal genes encoding carbonic anhydrase and urease, key enzymes in a biomineralization process, were predicted.

Use of soil fungi in the biosorption of three trace metals (Cd, Cu, Pb): promising candidates for treatment technology?

Trace metal contamination is a widespread and complex environmental problem. Because fungi are capable of growing in adverse environments, several fungal species could have an interesting potential in remediation technologies for metal contaminated environments. This study proposes to test the ability to tolerate and biosorb three trace metals (Cd, Cu and Pb) of 28 fungal isolates collected from different soils. First, a tolerance assay in agar medium was performed. Each isolate was grown in the presence of Cd, Cu, and Pb at different concentrations. Then, we exposed each soil fungus to 50 mg L^-1 of Cd, Cu, or Pb during 3 days in liquid medium. Parameters such as biomass production, pH, and biosorption were evaluated. The results showed that responses to metal exposure are very diverse even with fungi isolated from the same soil sample, or belonging to the same genera. Several isolates could be considered as good metal biosorbents and could be used in future mycoremediation studies. Among the 28 fungi tested, Absidia cylindrospora biosorbed more than 45% of Cd and Pb, Chaetomium atrobrunneum biosorbed more than 45% of Cd, Cu, Pb, and Coprinellus micaceus biosorbed 100% of Pb.

Carbonate and Oxalate Crystallization by Interaction of Calcite Marble with Bacillus subtilis and Bacillus subtilis–Aspergillus niger Association

Rock surfaces in natural systems are inhabited by multispecies communities of microorganisms. The biochemical activity of microorganisms and the patterns of microbial crystallization in these communities are mostly unexplored. Patterns of calcium carbonate and calcium oxalate crystallization induced by bacteria Bacillus subtilis and by B. subtilis together with Aspergillus niger on marble surface in vitro in liquid medium and in humidity chamber—were studied. Phase identification was supported by XRD, SEM, EDXS; metabolite composition was determined by GC–MS. It was found that the activity of B. subtilis–A. niger associations significantly differ from the activity of B. subtilis monocultures in the same trophic conditions. The phase composition and the morphology of the forming crystals are determined by the composition of the metabolites excreted by the microorganisms—particularly by the ratio of the concentrations of extracellular polymeric substances (EPS) and oxalic acid in the medium. The acidification activity of micromycetes may suppress the formation of bacterial EPS and prevent the formation of calcite. The present results can be used in the development of biotechnologies using microbial communities.

Bioremediation of toxic heavy metals (THMs) contaminated sites: concepts, applications and challenges

Heavy metal contamination is a global issue, where the prevalent contaminants are arsenic (As), cadmium (Cd), chromium (Cr)(VI), mercury (Hg), and lead (Pb). More often, they are collectively known as "most problematic heavy metals" and "toxic heavy metals" (THMs). Their treatment through a variety of biological processes is one of the prime interests in remediation studies, where heavy metal-microbe interaction approaches receive high interest for their cost effective and ecofriendly solutions. In this review, we provide an up to date information on different microbial processes (bioremediation) for the removal of THMs. For the same, emphasis is put on oxidation-reduction, biomineralization, bioprecipitation, bioleaching, biosurfactant technology, biovolatilization, biosorption, bioaccumulation, and microbe-assisted phytoremediation with their selective advantages and disadvantages. Further, the literature briefly discusses about the various setups of cleaning processes of THMs in environment under ex situ and in situ applications. Lately, the study sheds light on the manipulation of microorganisms through genetic engineering and nanotechnology for their advanced treatment approaches.

Urease and Nitrification Inhibitors—As Mitigation Tools for Greenhouse Gas Emissions in Sustainable Dairy Systems: A Review

Currently, nitrogen fertilizers are utilized to meet 48% of the total global food demand. The demand for nitrogen fertilizers is expected to grow as global populations continue to rise. The use of nitrogen fertilizers is associated with many negative environmental impacts and is a key source of greenhouse and harmful gas emissions. In recent years, urease and nitrification inhibitors have emerged as mitigation tools that are presently utilized in agriculture to prevent nitrogen losses and reduce greenhouse and harmful gas emissions that are associated with the use of nitrogen-based fertilizers. Both classes of inhibitor work by different mechanisms and have different physiochemical properties. Consequently, each class must be evaluated on its own merits. Although there are many benefits associated with the use of these inhibitors, little is known about their potential to enter the food chain, an event that may pose challenges to food safety. This phenomenon was highlighted when the nitrification inhibitor dicyandiamide was found as a residual contaminant in milk products in 2013. This comprehensive review aims to discuss the uses of inhibitor technologies in agriculture and their possible impacts on dairy product safety and quality, highlighting areas of concern with regards to the introduction of these inhibitor technologies into the dairy supply chain. Furthermore, this review discusses the benefits and challenges of inhibitor usage with a focus on EU regulations, as well as associated health concerns, chemical behavior, and analytical detection methods for these compounds within milk and environmental matrices.

Bioimmobilization of toxic metals by precipitation of carbonates using Sporosarcina luteola: An in vitro study and application to sulfide-bearing tailings

Metal release from mining wastes is a major environmental problem affecting ecosystems that requires effective, low-cost strategies for prevention and reclamation. The capacity of two strains (UB3 and UB5) of Sporosarcina luteola was investigated to induce the sequestration of metals by precipitation of carbonates in vitro and under microcosm conditions. These strains carry the ureC gene and have high urease activity. Also, they are highly resistant to metals and have the capacity for producing metallophores and arsenophores. SEM, EDX and XRD reveal that the two strains induced precipitation of calcite, vaterite and magnesian calcite as well as several (M²⁺)CO₃ such as hydromagnesite (Mg²⁺), rhodochrosite (Mn²⁺), cerussite (Pb²⁺), otavite (Cd²⁺), strontianite (Sr²⁺), witherite (Ba²⁺) and hydrozincite (Zn²⁺) in vitro. Inoculation of the mixed culture of UB3+UB5 in tailings increased the pH and induced the precipitation of vaterite, calcite and smithsonite enhancing biocementation and reducing pore size and permeability slowing down the oxidation of residual sulfides. Results further demonstrated that the strains of S. luteola immobilize bioavailable toxic elements through the precipitation and coprecipitation of thermodynamically stable (M²⁺)CO₃, Fe-Mn oxyhydroxides and organic chelates.

Application of microbe-induced carbonate precipitation for copper removal from copper-enriched waters: Challenges to future industrial application

Copper contamination in watercourses is a recent issue in countries where mining operations are prevalent. In this study, the application of copper precipitation through microbe-induced carbonate precipitation (MICP) was analyzed using urea hydrolysis by bacteria to evaluate precipitated copper carbonates. This article demonstrates the application of a copper precipitation assay involving Sporosarcina pasteurii (in 0.5 mM Cu²⁺ and 333 mM urea) and analyzes the resultant low removal (10%). The analysis indicates that the low removal was a consequence of Cu²⁺ complexation with the ammonia resulting from the hydrolysis of urea. However, the results indicate that there should be a positive correlation between the initial urea concentration and the bacterial tolerance to copper. This identifies a challenge in the industrial application of the process, wherein a minimum consumption of urea represents an economic advantage. Therefore, it is necessary to design a sequential process that decouples bacterial growth and copper precipitation, thereby decreasing the urea requirement.