Fossil Crustaceans as Parasites and Hosts

Isopods infesting Atlantic bonefish (Albula vulpes) host novel viruses, including reoviruses related to global pathogens, and opportunistically feed on humans

Isopods infest fish worldwide, but their role as disease vectors remains poorly understood. Here, we describe infestation of Atlantic bonefish (Albula vulpes) in Belize with isopods in two of three locations studied, with infestation rates of 15 and 44%. Isopods fed aggressively, and infested fish showed missing scales and scars. Gross morphologic and molecular phylogenetic analyses revealed the isopods to cluster within the family Aegidae and to be most closely related to members of the genus Rocinela, which are globally distributed micro-predators of fish. Metagenomic analysis of 10 isopods identified 11 viruses, including two novel reoviruses (Reovirales) in the families Sedoreoviridae and Spinareoviridae. The novel sedoreovirus clustered phylogenetically within an invertebrate-specific clade of viruses related to the genus Orbivirus, which contains arboviruses of global concern for mammal health. The novel spinareovirus clustered within the fish-infecting genus Aquareovirus, which contains viruses of global concern for fish health. Metagenomic analyses revealed no evidence of infection of bonefish with the novel aquareovirus, suggesting that viremia in bonefish is absent, low, or transient, or that isopods may have acquired the virus from other fish. During field collections, isopods aggressively bit humans, and blood meal analysis confirmed that isopods had fed on bonefish, other fish, and humans. Vector-borne transmission may be an underappreciated mechanism for aquareovirus transmission and for virus host switching between fish and other species, which has been inferred across viral families from studies of deep virus evolution.

Influence of sipunculan (peanut worm) activity on orifice formation in scleractinian Heterocyathus for adaptation to soft substrates

Mutualism profoundly affects the morphology and ecological evolution of both hosts and symbionts involved. Heterocyathus is a solitary scleractinian coral that lives on soft substrata, and sipunculan worms live symbiotically in the tube-like cavities (orifice) inside the coral skeletons. This habitat provides protection to the sipunculan worms against predators and-owing to the mobility of the worms-prevents the coral from being buried with sediments. The orifice growth is closely related to the symbiont sipunculan worms; however, this has not been previously elucidated. Here, we clarified the growth process of scleractinian coral orifices and the influence of sipunculan activity on this. The orifices were originally formed by rapid accretion deposits. The coral soft tissue enveloping the growth edge of the orifice repeatedly retreated to the outer side due to direct damage to the soft part and/or excessive stress caused by the rubbing of the sipunculan through locomotion, excretion, and feeding behaviour. This resulted in a toppled-domino microskeletal structure appearance and maintenance of the orifice growth. These outcomes demonstrate the first example of the direct influence of symbionts on the skeletal morphogenesis of scleractinian corals. The mutualism between the two organisms is maintained by the beneficial confrontation in forming orifices.

Exploring the preservation of a parasitic trace in decapod crustaceans using finite elements analysis

The fossil record of parasitism is poorly understood, due largely to the scarcity of strong fossil evidence of parasites. Understanding the preservation potential for fossil parasitic evidence is critical to contextualizing the fossil record of parasitism. Here, we present the first use of X-ray computed tomography (CT) scanning and finite elements analysis (FEA) to analyze the impact of a parasite-induced fossil trace on host preservation. Four fossil and three modern decapod crustacean specimens with branchial swellings attributed to an epicaridean isopod parasite were CT scanned and examined with FEA to assess differences in the magnitude and distribution of stress between normal and swollen branchial chambers. The results of the FEA show highly localized stress peaks in reaction to point forces, with higher peak stress on the swollen branchial chamber for nearly all specimens and different forces applied, suggesting a possible shape-related decrease in the preservation potential of these parasitic swellings. Broader application of these methods as well as advances in the application of 3D data analysis in paleontology are critical to understanding the fossil record of parasitism and other poorly represented fossil groups.

110-million-years-old fossil suggests early parasitism in shrimps

Direct evidence of paleo-parasitism in crustaceans is very scarce. Epicaridean isopods are obligatory parasites of crustaceans, including decapods such as crabs, shrimps, and lobsters. Their interaction with hosts is known from fossils as far back as the Jurassic through deformations of the branchial cuticle on the hosts. Their small size and low fossilization potential, outside of those larvae that have been found in amber, makes understanding the group's evolution challenging. Here, we report the oldest evidence of paleo-parasitism in marine shrimps and an imprint of a putative adult parasite that appears to be an epicaridean isopod. Our results suggest that the parasite-host interaction between epicaridean isopods and marine shrimps started at least 110 million years ago, and the Tethys Sea was a possible dispersal pathway for this lineage of parasites during the Jurassic and Cretaceous, as known for other marine organisms through most of the Mesozoic and Cenozoic. The oldest fossil records of bopyrid swellings associated with a large number of decapods from the Jurassic in Europe suggest that the Tethys region was a center of epicaridean distribution as a whole. Recent parasitic isopods found on dendrobranchiate shrimps are restricted to the Indo-Pacific and may represent a relict group of a lineage of parasites more widely distributed in the Mesozoic.

First discovery of parasite eggs in a vertebrate coprolite of the Late Triassic in Thailand

A paleoparasitological investigation of a vertebrate coprolite from the Huai Hin Lat Formation (Upper Triassic) was carried out. Five morphotypes of potential parasite eggs or sporocysts were identified in the coprolite by microscopic analysis using thin section technique. The rounded or oval shape and thick shell of one of the five morphotypes suggests that it belongs to nematode of the order Ascaridida. Systematic assignment of other morphotypes cannot be done in detail but suggests that the host was parasitized by different species of parasites. This is the first record of parasites in terrestrial vertebrate hosts from the Late Triassic in Asia and it provides new information on parasite-host interactions during the Mesozoic era.

A revision of Prolimulus woodwardi Fritsch, 1899 with comparison to other highly paedomorphic belinurids

Xiphosurida is an ingroup of marine Euchelicerata often referred to as "living fossils". However, this oxymoronic term is inapplicable for Paleozoic and early Mesozoic forms, as during these periods the group experienced notable evolutionary radiations; particularly the diverse late Palaeozoic clade Belinurina. Despite the iconic nature of the group, select species in this clade have been left undescribed in the light of recent geometric morphometric and phylogenetic considerations and methodologies. To this end, we re-describe Prolimulus woodwardi Fritsch, 1899 using new and type specimens to reveal more details on appendage anatomy and possible ecology. Furthermore, we present geometric morphometric and phylogenetic analyses that uncover relationships between P. woodwardi and other belinurids without genal spines. Both approaches highlight that a clade containing Prolimulus Fritsch, 1899, Liomesaspis Raymond, 1944, Alanops Racheboeuf, Vannier & Anderson, 2002 and Stilpnocephalus Selden, Simonetto & Marsiglio, 2019 may exist. While we do not erect a new group to contain these genera, we note that these genera exemplify the extreme limits of the Belinurina radiation and a peak in horseshoe crab diversity and disparity. This evidence also illustrates how changes in heterochronic timing are a key evolutionary phenomenon that can drive radiations among animals.

The scleractinian Agaricia undata as a new host for the coral-gall crab Opecarcinus hypostegus at Bonaire, southern Caribbean

The Caribbean scleractinian reef coral Agaricia undata (Agariciidae) is recorded for the first time as a host of the coral-gall crab Opecarcinus hypostegus (Cryptochiridae). The identity of the crab was confirmed with the help of DNA barcoding. The association has been documented with photographs taken in situ at 25 m depth and in the laboratory. The predominantly mesophotic depth range of the host species suggests this association to be present also at greater depths. With this record, all seven Agaricia species are now listed as gall-crab hosts, together with the agariciid Helioseris cucullata. Within the phylogeny of Agariciidae, Helioseris is not closely related to Agaricia. Therefore, the association between Caribbean agariciids and their gall-crab symbionts may either have originated early in their shared evolutionary history or later as a result of host range expansion. New information on coral-associated fauna, such as what is presented here, leads to a better insight on the diversity, evolution, and ecology of coral reef biota, particularly in the Caribbean, where cryptochirids have rarely been studied.

A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

Comprising over 15 000 living species, decapods (crabs, shrimp and lobsters) are the most instantly recognizable crustaceans, representing a considerable global food source. Although decapod systematics have received much study, limitations of morphological and Sanger sequence data have yet to produce a consensus for higher-level relationships. Here, we introduce a new anchored hybrid enrichment kit for decapod phylogenetics designed from genomic and transcriptomic sequences that we used to capture new high-throughput sequence data from 94 species, including 58 of 179 extant decapod families, and 11 of 12 major lineages. The enrichment kit yields 410 loci (greater than 86 000 bp) conserved across all lineages of Decapoda, more clade-specific molecular data than any prior study. Phylogenomic analyses recover a robust decapod tree of life strongly supporting the monophyly of all infraorders, and monophyly of each of the reptant, 'lobster' and 'crab' groups, with some results supporting pleocyemate monophyly. We show that crown decapods diverged in the Late Ordovician and most crown lineages diverged in the Triassic-Jurassic, highlighting a cryptic Palaeozoic history, and post-extinction diversification. New insights into decapod relationships provide a phylogenomic window into morphology and behaviour, and a basis to rapidly and cheaply expand sampling in this economically and ecologically significant invertebrate clade.

Acusicola margulisae n. sp. (Copepoda: Ergasilidae) from freshwater fishes in a Nicaraguan crater lake based on morphological and molecular evidence

The ergasilid copepod Acusicola margulisae n. sp. is described based on material from three species of cichlid, Amphilophus citrinellus (Günther), Parachromis managuensis (Günther), and Oreochromis sp., and from the poecilid Poecilia mexicana (Steindachner), in the crater Lake Asososca León, Nicaragua. This constitutes the 15th species described in the genus Acusicola Cressey, 1970. The new species differs from all its congeners by the relatively longer first endopodal segment of leg 1, and the size and number of setae on second endopodal segment of leg 1. We provide the first gene sequence for a species of Acusicola. To examine the intraspecific genetic variation of the new species collected from different host species, sequences of the mitochondrial barcode region cox1 were generated. In addition, partial regions of the 18S and 28S ribosomal RNA genes were sequenced and used to infer the phylogenetic relationships of the genus Acusicola within the family Ergasilidae Burmeister, 1835. The phylogenetic trees yielded the isolates of Acusicola margulisae n. sp. as a reciprocally monophyletic lineage, and as the sister taxa of five genera of ergasilid copepods. The genus Ergasilus von Nordmann, 1832 was recovered as a paraphyletic group. These analyses indicate that phylogenetic relationships are not yet well resolved and more representative species and genera of the family are required to provide a robust classification of this highly diverse group of copepods.

Extreme diversity and parasitism of Late Jurassic squat lobsters (Decapoda: Galatheoidea) and the oldest records of porcellanids and galatheids

Galatheoid decapod crustaceans consist of ~1250 species today, but their evolutionary history and origin are poorly known. We studied the largest known fossil galatheoid assemblage, from the Late Jurassic of Ernstbrunn, Austria. This coral-associated assemblage yielded 2348 specimens, arranged in 53 species, 22 genera and six families. Rarefaction analyses show that nearly all taxa have been collected. In addition to abundant Munidopsidae, this assemblage also contains the oldest members of four of the six galatheoid families, including Galatheidae, Munididae, Paragalatheidae and Porcellanidae. We describe the oldest Porcellanidae and Galatheidae to date, and a catillogalatheid: Vibrissalana jurassica gen. et sp. nov., ?Galathea genesis sp. nov. and Galatheites britmelanarum sp. nov. Our re-examination of the oldest claimed porcellanid, Jurellana tithonia, from Ernstbrunn, indicates that it represents a homolodromioid brachyuran, ascribed to Jurellanidae fam. nov. along with Ovalopus gen. nov. The second-oldest claimed porcellanid, Early Cretaceous Petrolisthes albianicus, is transferred to the catillogalatheid Hispanigalathea. We further document that 10.4% of Ernstbrunn galatheoid specimens were parasitized by epicaridean isopods, as shown by swellings in the gill region. Statistical analyses indicate that infestation is near non-random, varying from 0 to 33% for common species. Thus, Late Jurassic coral-associated habitats were key ecosystems in the evolution of galatheoids and their parasites.

Life Cycle and Life History Strategies of Parasitic Crustacea

Different parasitic life strategies are described including four new life cycles: complex rebrooding, micro-male, mesoparasite and prey-predator transfer. Four new life cycle behaviours are named: nursery hiding, mid-moult stage, positive precursor (intraspecific antagonism) and negative precursor (ambush strategy). Further strategies discussed are opossum attack, double parasitism (doubling of the normal reproductive set), duplex arrangement (separated male-female pairs), simple rebrooding, and describing how displaced parasites and superinfections may partly elucidate life cycles. Proportional stunting masks life history effects of parasitism; cuckoo copepods are true parasites and not just associates; burrowing barnacles (acrothoracicans) are not parasites. Further findings based on life cycle information: branchiurans and pentastomes are possibly not related; firefly seed shrimp are not parasites; copepod pre-adult life cycle stages are common in the western pacific but rare in Caribbean; harpacticoids on vertebrates are not parasites; cuckoo copepods are true parasites; explained the importance of pennellid intermediate hosts. Crustacean parasite life cycles are largely unknown (1% of species). Most crustacean life cycles represent minor modifications from the ancestral free-living mode. Crustacean parasites have less complex and less modified life cycles than other major parasite groups. This limits their exploitation of, and effectiveness, in parasitism. However, these life cycles will be an advantage in Global Change. Most metazoan parasites will be eliminated while crustaceans (and nematodes) will inherit the new world of parasites.

168 million years old "marine lice" and the evolution of parasitism within isopods

Background

Isopods (woodlice, slaters and their relatives) are common crustaceans and abundant in numerous habitats. They employ a variety of lifestyles including free-living scavengers and predators but also obligate parasites. This modern-day variability of lifestyles is not reflected in isopod fossils so far, mostly as the life habits of many fossil isopods are still unclear. A rather common group of fossil isopods is Urda (190-100 million years). Although some of the specimens of different species of Urda are considered well preserved, crucial characters for the interpretation of their lifestyle (and also of their phylogenetic position), have so far not been accessible.

Results

Using up-to-date imaging methods, we here present morphological details of the mouthparts and the thoracopods of 168 million years old specimens of Urda rostrata. Mouthparts are of a sucking-piercing-type morphology, similar to the mouthparts of representatives of ectoparasitic isopods in groups such as Aegidae or Cymothoidae. The thoracopods bear strong, curved dactyli most likely for attaching to a host. Therefore, mouthpart and thoracopod morphology indicate a parasitic lifestyle of Urda rostrata. Based on morphological details, Urda seems deeply nested within the parasitic isopods of the group Cymothoida.

Conclusions

Similarities to Aegidae and Cymothoidae are interpreted as ancestral characters; Urda is more closely related to Gnathiidae, which is therefore also interpreted as an ingroup of Cymothoida. With this position Urda provides crucial information for our understanding of the evolution of parasitism within isopods. Finally, the specimens reported herein represent the oldest parasitic isopods known to date.

Two new species of poecilostomatoid copepods symbiotic on the venomous echinoid Toxopneustes pileolus (Lamarck) (Echinodermata) from Vietnam

Two new coexisting species of crustacean copepods (Poecilostomatoida) belonging to the echinoid-specific genera Mecomerinx Humes, 1977 (Pseudanthessiidae) and Clavisodalis Humes, 1970 (Taeniacanthidae) found associated with the venomous flower urchin Toxopneustes pileolus (Lamarck) (Echinodermata: Echinoidea: Toxopneustidae) in the South China Sea (Vietnam) are described. The diagnostic features of Mecomerinx ohtsukai n. sp. are: (i) three setae and one aesthetasc on the first segment of antennules; (ii) relatively long caudal ramus; (iii) elongated terminal segment of the antenna; and (iv) two claws on the terminal segment of antenna slightly unequal in length. The taeniacanthid copepod Clavisodalis toxopneusti n. sp. is distinguished from all seven known congeners by having two-segmented endopod of the legs 2-4 and four setae on the distal endopodal segment of the leg 1. This is the first report on copepods associated with echinoids of the genus Toxopneustes Agassiz and the first finding of Mecomerinx as well as taeniacanthid copepods in the South China Sea associated with echinoids.

Early Miocene amber inclusions from Mexico reveal antiquity of mangrove-associated copepods

Copepods are aquatic microcrustaceans and represent the most abundant metazoans on Earth, outnumbering insects and nematode worms. Their position of numerical world predominance can be attributed to three principal radiation events, i.e. their major habitat shift into the marine plankton, the colonization of freshwater and semiterrestrial environments, and the evolution of parasitism. Their variety of life strategies has generated an incredible morphological plasticity and disparity in body form and shape that are arguably unrivalled among the Crustacea. Although their chitinous exoskeleton is largely resistant to chemical degradation copepods are exceedingly scarce in the geological record with limited body fossil evidence being available for only three of the eight currently recognized orders. The preservation of aquatic arthropods in amber is unusual but offers a unique insight into ancient subtropical and tropical ecosystems. Here we report the first discovery of amber-preserved harpacticoid copepods, represented by ten putative species belonging to five families, based on Early Miocene (22.8 million years ago) samples from Chiapas, southeast Mexico. Their close resemblance to Recent mangrove-associated copepods highlights the antiquity of the specialized harpacticoid fauna living in this habitat. With the taxa reported herein, the Mexican amber holds the greatest diversity of fossil copepods worldwide.

Functional morphology of parasitic isopods: understanding morphological adaptations of attachment and feeding structures in Nerocila as a pre-requisite for reconstructing the evolution of Cymothoidae

Parasites significantly influence food webs and ecosystems and occur all over the world in almost every animal group. Within crustaceans there are numerous examples of ectoparasites; for example, representatives of the isopod group Cymothoidae. These obligatory parasitic isopods are relatively poorly studied regarding their functional morphology. Here we present new details of the morphological adaptations to parasitism of the cymothoiid ingroup Nerocila with up-to-date imaging methods (macro photography, stereo imaging, fluorescence photography, micro CT, and histology). Central aspects of the study were (1) the morphology of the mouthparts and (2) the attachment on the host, hence the morphology of the thoracopods. The mouthparts (labrum, mandibles, paragnaths, maxillulae, maxillae, maxillipeds) form a distinct mouth cone and are most likely used for true sucking. The mouthparts are tightly “folded” around each other and provide functional rails for the only two moving mouthparts, mandible and maxillula. Both are not moving in an ancestral-type median-lateral movement, but are strongly tilted to move more in a proximal-distal axis. New details concerning the attachment demonstrate that the angular arrangement of the thoracopods is differentiated to impede removal by the host. The increased understanding of morphological adaptation to parasitism of modern forms will be useful in identifying disarticulated (not attached to the host) fossil parasites.

Possible shell disease in 100 million-year-old crabs

Modern organisms exhibit evidence of many diseases, but recognizing such evidence in fossils remains difficult, thus hampering the study of the evolution of disease. We report on 2 molts of the goniodromitid crabs Distefania incerta and Goniodromites laevis from the mid-Cretaceous (late Albian) of Spain, with both species exhibiting damage to the dorsal carapace in otherwise well-preserved specimens. The subcircular to quadratical holes, found in <0.2% of the specimens, resemble damage caused by bacterial infections on the cuticle of modern decapods in terms of size and shape. Abiotic damage, predation, and encrustation followed by damage to the shell provide less satisfactory explanations, although these agents cannot be completely excluded from a role in shell disease etiology. We hypothesize that the observed fossil lesions are caused primarily by bacterial disease that started prior to molting, with or without other agents of initiation. If correct, this is the only known example of such bacterial infections in decapod crustaceans from the fossil record thus far, pushing back the evolutionary history of this type of shell disease by ~100 million years.

Trace fossil evidence of coral-inhabiting crabs (Cryptochiridae) and its implications for growth and paleobiogeography

Members of the Cryptochiridae are small, fragile, symbiotic crabs that live in domiciles in modern corals. Despite their worldwide occurrence with over 50 species known today, their fossil record is unknown. We provide the first unambiguous evidence of cryptochirids in the fossil record through their crescentic pits, typical for certain cryptochirids, in Western Atlantic fossil corals, while the Eocene genus Montemagrechirus is excluded from the Cryptochiridae and referred to Montemagrechiridae fam. nov. Nine Pleistocene corals with crescentic pits originate from Florida (USA), and single specimens with pits come from the late Pleistocene of Cuba and the late Pliocene of Florida, all of which are measured for growth analyses. These pits represent trace fossils named Galacticus duerri igen. nov., isp. nov. A study of modern cryptochirid domicile shape (crescentic pit, circular-oval pit, or a true gall) shows that species within crab genera tend to inhabit the same pit shape. Crescentic pits in corals occur not only in the Western Atlantic today, but also in the Indo-West Pacific and in the Eastern Pacific. Thus, examination of Cenozoic fossil coral collections from these regions should yield further examples of cryptochirid pits, which would help to constrain the antiquity of this cryptic crab family.

Systematics, phylogeny, and taphonomy of ghost shrimps (Decapoda): a perspective from the fossil record

Ghost shrimps of Callianassidae and Ctenochelidae are soft-bodied, usually heterochelous decapods representing major bioturbators of muddy and sandy (sub)marine substrates. Ghost shrimps have a robust fossil record spanning from the Early Cretaceous (~ 133 Ma) to the Holocene and their remains are present in most assemblages of Cenozoic decapod crustaceans. Their taxonomic interpretation is in flux, mainly because the generic assignment is hindered by their insufficient preservation and disagreement in the biological classification. Furthermore, numerous taxa are incorrectly classified within the catch-all taxon Callianassa. To show the historical patterns in describing fossil ghost shrimps and to evaluate taphonomic aspects influencing the attribution of ghost shrimp remains to higher level taxa, a database of all fossil species treated at some time as belonging to the group has been compiled: 250 / 274 species are considered valid ghost shrimp taxa herein. More than half of these taxa (160 species, 58.4%) are known only from distal cheliped elements, i.e., dactylus and / or propodus, due to the more calcified cuticle locally. Rarely, ghost shrimps are preserved in situ in burrows or in direct association with them, and several previously unpublished occurrences are reported herein. For generic assignment, fossil material should be compared to living species because many of them have modern relatives. Heterochely, intraspecific variation, ontogenetic changes and sexual dimorphism are all factors that have to be taken into account when working with fossil ghost shrimps. Distal elements are usually more variable than proximal ones. Preliminary results suggest that the ghost shrimp clade emerged not before the Hauterivian (~ 133 Ma). The divergence of Ctenochelidae and Paracalliacinae is estimated to occur within the interval of Hauterivian to Albian (133-100 Ma). Callichirinae and Eucalliacinae likely diverged later during the Late Cretaceous (100-66 Ma), whereas Callianassinae did not appear before the Eocene (56 Ma).

The Importance of Fossils in Understanding the Evolution of Parasites and Their Vectors

Knowledge concerning the diversity of parasitism and its reach across our current understanding of the tree of life has benefitted considerably from novel molecular phylogenetic methods. However, the timing of events and the resolution of the nature of the intimate relationships between parasites and their hosts in deep time remain problematic. Despite its vagaries, the fossil record provides the only direct evidence of parasites and parasitism in the fossil record of extant and extinct lineages. Here, we demonstrate the potential of the fossil record and other lines of geological evidence to calibrate the origin and evolution of parasitism by combining different kinds of dating evidence with novel molecular clock methodologies. Other novel methods promise to provide additional evidence for the presence or the life habit of pathogens and their vectors, including the discovery and analysis of ancient DNA and other biomolecules, as well as computed tomographic methods.