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Chertkova RV, Firsov AM, Brazhe NA, Nikelshparg EI, Bochkova ZV, Bryantseva TV, Semenova MA, Baizhumanov AA, Kotova EA, Kirpichnikov MP, Maksimov GV, Antonenko YN, Dolgikh DA. Multiple Mutations in the Non-Ordered Red Ω-Loop Enhance the Membrane-Permeabilizing and Peroxidase-like Activity of Cytochrome c. Biomolecules 2022; 12:biom12050665. [PMID: 35625593 PMCID: PMC9138828 DOI: 10.3390/biom12050665] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2022] [Revised: 04/27/2022] [Accepted: 04/30/2022] [Indexed: 02/04/2023] Open
Abstract
A key event in the cytochrome c-dependent apoptotic pathway is the permeabilization of the outer mitochondrial membrane, resulting in the release of various apoptogenic factors, including cytochrome c, into the cytosol. It is believed that the permeabilization of the outer mitochondrial membrane can be induced by the peroxidase activity of cytochrome c in a complex with cardiolipin. Using a number of mutant variants of cytochrome c, we showed that both substitutions of Lys residues from the universal binding site for oppositely charged Glu residues and mutations leading to a decrease in the conformational mobility of the red Ω-loop in almost all cases did not affect the ability of cytochrome c to bind to cardiolipin. At the same time, the peroxidase activity of all mutant variants in a complex with cardiolipin was three to five times higher than that of the wild type. A pronounced increase in the ability to permeabilize the lipid membrane in the presence of hydrogen peroxide, as measured by calcein leakage from liposomes, was observed only in the case of four substitutions in the red Ω-loop (M4 mutant). According to resonance and surface-enhanced Raman spectroscopy, the mutations caused significant changes in the heme of oxidized cytochrome c molecules resulting in an increased probability of the plane heme conformation and the enhancement of the rigidity of the protein surrounding the heme. The binding of wild-type and mutant forms of oxidized cytochrome c to cardiolipin-containing liposomes caused the disordering of the acyl lipid chains that was more pronounced for the M4 mutant. Our findings indicate that the Ω-loop is important for the pore formation in cardiolipin-containing membranes.
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Affiliation(s)
- Rita V. Chertkova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
- Correspondence: (R.V.C.); (N.A.B.)
| | - Alexander M. Firsov
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.M.F.); (E.A.K.); (Y.N.A.)
| | - Nadezda A. Brazhe
- Biophysics Department, Biological Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia; (E.I.N.); (A.A.B.); (G.V.M.)
- Correspondence: (R.V.C.); (N.A.B.)
| | - Evelina I. Nikelshparg
- Biophysics Department, Biological Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia; (E.I.N.); (A.A.B.); (G.V.M.)
| | - Zhanna V. Bochkova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
- Biophysics Department, Biological Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia; (E.I.N.); (A.A.B.); (G.V.M.)
| | - Tatyana V. Bryantseva
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
- Biology Department, Lomonosov Moscow State University, 119899 Moscow, Russia
| | - Marina A. Semenova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
| | - Adil A. Baizhumanov
- Biophysics Department, Biological Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia; (E.I.N.); (A.A.B.); (G.V.M.)
| | - Elena A. Kotova
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.M.F.); (E.A.K.); (Y.N.A.)
| | - Mikhail P. Kirpichnikov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
- Biology Department, Lomonosov Moscow State University, 119899 Moscow, Russia
| | - Georgy V. Maksimov
- Biophysics Department, Biological Faculty, Lomonosov Moscow State University, 119234 Moscow, Russia; (E.I.N.); (A.A.B.); (G.V.M.)
- Federal State Autonomous Educational Institution of Higher Education “National Research Technological University “MISiS””, 119049 Moscow, Russia
| | - Yuriy N. Antonenko
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119991 Moscow, Russia; (A.M.F.); (E.A.K.); (Y.N.A.)
| | - Dmitry A. Dolgikh
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (Z.V.B.); (T.V.B.); (M.A.S.); (M.P.K.); (D.A.D.)
- Biology Department, Lomonosov Moscow State University, 119899 Moscow, Russia
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Sanchez-Cruz P, Vazquez K, Lozada EL, Valiyeva F, Sharma R, Vivas PE, Alegria AE. Photosensitized co-generation of nitric oxide and singlet oxygen Enhanced toxicity against ovarian cancer cells. JOURNAL OF NANOPARTICLE RESEARCH : AN INTERDISCIPLINARY FORUM FOR NANOSCALE SCIENCE AND TECHNOLOGY 2022; 24:82. [PMID: 37035485 PMCID: PMC10081534 DOI: 10.1007/s11051-022-05463-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 03/23/2022] [Indexed: 06/19/2023]
Abstract
Near micromolar concentrations of nitric oxide (NO) induce tumor cells death. However, an appropriate NO load has to be delivered selectively to the tumor site in order to avoid NO loss and secondary NO-induced effects. The encapsulation of millimolar concentrations of a NO source and an appropriate trigger of NO release within phospatidylcholine-based liposomes should provide an efficient tool for the selective release of the needed NO payload. In this work we report the photosensitized generation of singlet oxygen and NO from folate-targeted PEGylated liposomes, containing AlPcS4 as the sensitizer and S-nitrosoglutathione (GSNO), in millimolar amounts, as the NO source. Amounts of singlet oxygen detected outside the liposome when using PEGylated liposomes are near 200 % larger when GSNO is present inside the liposomes as compared to its absence. These liposomes, conjugated to folate, were found to enhance the photosensitized cytotoxicity to A2780CP20 ovarian cancer cells as compared to liposomes containing the sensitizer but no GSNO (30 % as compared to 70 % cell viability) under the conditions of this work. Fluorescense of AlPcS4 was observed inside cells incubated with folate-conjugated liposomes but not with liposomes without folate. The photosensitized activity enhancement by GSNO increased when light fluence or liposome concentration were increased. The majority of ovarian cancer patients are initially diagnosed with disseminated intra-abdominal disease (stages III-IV) and have a 5-year survival of less than 20%. This work suggests a novel ovarian cancer nodules treatment via the use of tumor-targeted liposome nanoparticles with the capability of generating simultaneously reactive oxygen and nitrogen species upon illumination with near-infrared light.
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Affiliation(s)
| | - Katerina Vazquez
- Department of Biochemistry, UPR Medical Sciences Campus, San Juan, PR 00936
| | - Eunice L. Lozada
- Comprehensive Cancer Center, UPR Medical Sciences Campus, San Juan, PR 00936
| | - Fatima Valiyeva
- Comprehensive Cancer Center, UPR Medical Sciences Campus, San Juan, PR 00936
| | - Rohit Sharma
- Comprehensive Cancer Center, UPR Medical Sciences Campus, San Juan, PR 00936
| | - Pablo E. Vivas
- Department of Biochemistry, UPR Medical Sciences Campus, San Juan, PR 00936
- Comprehensive Cancer Center, UPR Medical Sciences Campus, San Juan, PR 00936
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Lysine 72 substitutions differently affect lipid membrane permeabilizing and proapoptotic activities of horse heart cytochrome c. Biochem Biophys Res Commun 2021; 548:74-77. [PMID: 33631678 DOI: 10.1016/j.bbrc.2021.02.023] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Accepted: 02/05/2021] [Indexed: 12/25/2022]
Abstract
Peroxidase activity of cytochrome c (cyt c)/cardiolipin (CL) complex is supposed to be involved in the initiation of apoptosis via peroxidative induction of mitochondrial membrane permeabilization. As cyt c binding to CL-containing membranes is at least partially associated with electrostatic protein/lipid interaction, we screened single-point mutants of horse heart cyt c with various substitutions of lysine at position 72, considered to play a significant role in both the binding and peroxidase activity of the protein. Contrary to expectations, K72A, K72R and K72L substitutions exerted slight effects on both the cyt c binding to CL-containing liposomal membranes and the cyt c/H2O2-induced calcein leakage from liposomes, used here as a membrane permeabilization assay. Both the binding and permeabilization were decreased to various extents, but not significantly, in the case of K72E and K72N mutants. A drastic difference was found between the sequence of the permeabilizing activities of the cyt c variants and the previously described order of their proapoptotic activities (Chertkova et al., 2008).
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Manickam P, Vashist A, Madhu S, Sadasivam M, Sakthivel A, Kaushik A, Nair M. Gold nanocubes embedded biocompatible hybrid hydrogels for electrochemical detection of H 2O 2. Bioelectrochemistry 2019; 131:107373. [PMID: 31525638 DOI: 10.1016/j.bioelechem.2019.107373] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Revised: 09/05/2019] [Accepted: 09/05/2019] [Indexed: 10/26/2022]
Abstract
Smart electrochemical biosensors have emerged as a promising alternative analytical diagnostic tool in recent clinical practice. However, improvement in the biocompatibility and electrical conductivity of the biosensor matrix and the immobilization of various bioactive molecules such as enzymes still remain challenging. The present research reports the synthesis of a biocompatible hydrogel network and its integration with gold nanocubes (AuNCs) for developing a novel biosensor with improved functionality. The interpenetrating hydrogel network consist of biopolymers developed using graft co-polymerization of β-cyclodextrin (β-CD) and chitosan (CS). The novelty of this work is in integrating the CS-g-β-CD hydrogel network with conductive AuNCs for improving hydrogel conductivity, biosensor sensitivity and use of the material for a biocompatible sensor. The present protocol advances the state of the art for the utilization of biopolymeric hydrogels system in synergy with an enzymatic biosensing protocol for exclusively detecting hydrogen peroxide (H2O2). Immobilization of the mitochondrial protein, cytochrome c (cyt c) into the hydrogel nanocomposite matrix was performed via thiol cross-linking. This organic-inorganic hybrid nanocomposite hydrogel matrix exhibited high biocompatibility (RAW 264.7 and N2a cell lines), improved electrical conductivity to attain high sensitivity (1.2 mA mM-1 cm-2) and a low detection limit (15 × 10-9 M) for H2O2.
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Affiliation(s)
- Pandiaraj Manickam
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute, Karaikudi 630 003, Tamil Nadu, India.
| | - Arti Vashist
- Department of Immunology & Nano-Medicine, Institute of NeuroImmune Pharmacology, Center for Personalized Nanomedicine, Herbert Wertheim College of Medicine, Florida International University, Miami, FL 33199, USA
| | - Sekar Madhu
- Department of Nanoscience & Technology, Bharathiar University, Coimbatore 641 046, India
| | - Mohanraj Sadasivam
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute, Karaikudi 630 003, Tamil Nadu, India
| | - Arunkumar Sakthivel
- Electrodics and Electrocatalysis Division, CSIR-Central Electrochemical Research Institute, Karaikudi 630 003, Tamil Nadu, India; Academy of Scientific and Innovative Research, Ghaziabad 201 002, Uttar Pradesh, India
| | - Ajeet Kaushik
- Department of Natural Sciences, Division of Sciences, Art & Mathematics, Florida Polytechnic University, Lakeland, FL 33805, USA
| | - Madhavan Nair
- Department of Immunology & Nano-Medicine, Institute of NeuroImmune Pharmacology, Center for Personalized Nanomedicine, Herbert Wertheim College of Medicine, Florida International University, Miami, FL 33199, USA
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Martinez SR, Pavani CC, Baptista MS, Becerra MC, Quevedo MA, Ribone SR. Identification of the potential biological target of N-benzenesulfonyl-1,2,3,4-tetrahydroquinoline compounds active against gram-positive and gram-negative bacteria. J Biomol Struct Dyn 2019; 38:2412-2421. [PMID: 31215842 DOI: 10.1080/07391102.2019.1633410] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
The development of new antibiotics with activity towards a broad spectrum of bacteria, including multiresistant strains, is a very important topic for global public health. As part of previous works, N-benzenesulfonyl-1,2,3,4-tetrahydroquinoline (BSTHQ) derivatives were described as antimicrobial agents active against gram-positive and gram-negative pathogens. In this work, experimental and molecular modelling studies were performed in order to identify their potential biological target in the light of structure-based design efforts towards further BSTHQ derivatives. First, a carboxyfluorescein leakage assay was performed using liposomes to mimic bacterial membranes, which found no significative membrane disruption effects with respect to control samples. These results support a non-surfactant antimicrobial activity of the tested compounds. In a second stage, the inhibition of potential antimicrobial targets was screened using molecular modelling methods, taking into account previously reported druggable targets deposited in the ChEMBL database for Escherichia coli and Staphylococcus aureus. Two enzymes, namely D-glutamic acid-adding enzyme (MurD) and N-acetylglucosamine-1-phophate-uridyltransferase (GlmU), both involved in bacterial membrane synthesis, were identified as potential targets. Pharmacodynamic interaction models were developed using known MurD and GlmU inhibitors by applying state-of-the-art chemoinformatic methods (molecular docking, molecular dynamics and free energy of interaction analyses). These models were further extended to the analysis of the studied BSTHQ derivatives. Overall, our results demonstrated that the studied BSTHQ derivatives elicit their antibacterial activity by interacting with a specific molecular target, GlmU being the highly feasible one. Based on the presented results, further structure-aided design efforts towards the obtaining of novel BSTHQ derivatives are envisioned.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Sol R Martinez
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET and Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina.,Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, SP, Brazil
| | - Christiane C Pavani
- Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, SP, Brazil.,Biophotonics Applied to Health Sciences, University Nove de Jullho, São Paulo, SP, Brazil
| | - Mauricio S Baptista
- Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, SP, Brazil
| | - María C Becerra
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET and Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Mario A Quevedo
- Unidad de Investigación y Desarrollo en Tecnología Farmacéutica (UNITEFA), CONICET and Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
| | - Sergio R Ribone
- Unidad de Investigación y Desarrollo en Tecnología Farmacéutica (UNITEFA), CONICET and Departamento de Ciencias Farmacéuticas, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Córdoba, Argentina
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Chirayath RB, A. AV, Jayakumar R, Biswas R, Vijayachandran LS. Development of Mangifera indica leaf extract incorporated carbopol hydrogel and its antibacterial efficacy against Staphylococcus aureus. Colloids Surf B Biointerfaces 2019; 178:377-384. [DOI: 10.1016/j.colsurfb.2019.03.034] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Revised: 02/28/2019] [Accepted: 03/14/2019] [Indexed: 01/30/2023]
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Massiot J, Rosilio V, Makky A. Photo-triggerable liposomal drug delivery systems: from simple porphyrin insertion in the lipid bilayer towards supramolecular assemblies of lipid–porphyrin conjugates. J Mater Chem B 2019; 7:1805-1823. [DOI: 10.1039/c9tb00015a] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Light-responsive liposomes are considered nowadays as one of the most promising nanoparticulate systems for the delivery and release of an active pharmaceutical ingredient (API) in a spatio-temporal manner.
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Affiliation(s)
- Julien Massiot
- Institut Galien Paris Sud
- Univ Paris-Sud
- CNRS
- Université Paris-Saclay
- 92296 Châtenay-Malabry
| | - Véronique Rosilio
- Institut Galien Paris Sud
- Univ Paris-Sud
- CNRS
- Université Paris-Saclay
- 92296 Châtenay-Malabry
| | - Ali Makky
- Institut Galien Paris Sud
- Univ Paris-Sud
- CNRS
- Université Paris-Saclay
- 92296 Châtenay-Malabry
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Minocycline prevents peroxidative permeabilization of cardiolipin-containing bilayer lipid membranes mediated by cytochrome c. Biochem Biophys Res Commun 2018; 507:510-513. [DOI: 10.1016/j.bbrc.2018.11.078] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 11/13/2018] [Indexed: 12/12/2022]
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Models, methods, and approaches to study mitochondrial functioning in vitro, in situ, and in vivo: Editorial for the special issue on Mitochondrial Biochemistry and Bioenergetics. Anal Biochem 2018; 552:1-3. [PMID: 29678762 DOI: 10.1016/j.ab.2018.04.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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