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Yu J, Wang X, Ren F, Zhang J, Shen J, Liu H, Zhou J. An easy and straightforward synthesized nano calcium phosphate for highly capture of multiply phosphorylated peptides. Anal Chim Acta 2023; 1257:341150. [PMID: 37062565 DOI: 10.1016/j.aca.2023.341150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 03/13/2023] [Accepted: 03/26/2023] [Indexed: 04/18/2023]
Abstract
Multisite phosphorylation of proteins regulates various cellular life activities, however, the capture of low abundance multi-phosphopeptides from biosamples and identification of phosphorylation sites are largely limited due to the limited enrichment materials and their unclear interactions with multi-phosphopeptides. Here we propose using two cheap raw materials (CaCl2·2H2O and Na2HPO4·12H2O) in 10 min at room temperature to synthesize the structurally simple Nanometric Calcium Phosphate (CaP) to resolve this challenge. The current results showed that the "simple" CaP has good selection specificity, high sensitivity and stability for multi-phosphopeptides enrichment and the identification of phosphorylation sites, which facilitate the popularization and application of phosphoproteomics research. Further, the interaction of CaP and multi-phosphopeptides were qualitatively characterized at the molecular/atomic level and the high affinity between them was quantified by the isothermal titration microcalorimeter based on the laws of thermodynamics. The results indicated that the interaction was a spontaneous (ΔG < 0) exothermic reaction with enthalpy reduction (ΔH < 0) and driven mainly by hydrogen bond and electrostatic interaction process.
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Affiliation(s)
- Jialin Yu
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Xinhui Wang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Fangkun Ren
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Jingyi Zhang
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Jian Shen
- College of Chemistry and Materials Science, Jiangsu Key Laboratory Biofunctional Materials, Nanjing Normal University, Nanjing, 210023, China
| | - Hailong Liu
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
| | - Jiahong Zhou
- College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
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Sivrikaya S, Imamoglu M. Online Solid-Phase Extraction of Cd(II), Cu(II), and Co(II) Using Covalently Attached Bis(salicylaldimine) to Silica Gel for Determination in Food and Water by Flame Atomic Absorption Spectrometry. ANAL LETT 2017. [DOI: 10.1080/00032719.2017.1360897] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Sezen Sivrikaya
- Chemistry Department, Sciences and Arts Faculty, Sakarya University, Sakarya, Turkey
- Polymer Engineering Department, Technology Faculty, Düzce University, Düzce, Turkey
| | - Mustafa Imamoglu
- Chemistry Department, Sciences and Arts Faculty, Sakarya University, Sakarya, Turkey
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Long XY, Zhang ZJ, Li JY, Sheng D, Lian HZ. Controllable Preparation of CuFeMnO4 Nanospheres as a Novel Multifunctional Affinity Probe for Efficient Adsorption and Selective Enrichment of Low-Abundance Peptides and Phosphopeptides. Anal Chem 2017; 89:10446-10453. [DOI: 10.1021/acs.analchem.7b02476] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Xing-Yu Long
- State Key Laboratory of Analytical Chemistry for Life Science, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, Nanjing 210023, China
- Editorial
Department of Journal, Guizhou Normal University, Guiyang 550001, China
| | - Zi-Jin Zhang
- State Key Laboratory of Analytical Chemistry for Life Science, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, Nanjing 210023, China
| | - Jia-Yuan Li
- State Key Laboratory of Analytical Chemistry for Life Science, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, Nanjing 210023, China
| | - Dong Sheng
- State Key Laboratory of Analytical Chemistry for Life Science, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, Nanjing 210023, China
| | - Hong-Zhen Lian
- State Key Laboratory of Analytical Chemistry for Life Science, Collaborative Innovation Center of Chemistry for Life Sciences, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, Nanjing 210023, China
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Dai L, Jin S, Fan M, Zhou P. Preparation of quaternized cellulose/chitosan microspheres for selective enrichment of phosphopeptides. Anal Bioanal Chem 2017; 409:3309-3317. [PMID: 28258465 DOI: 10.1007/s00216-017-0273-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2016] [Revised: 02/08/2017] [Accepted: 02/21/2017] [Indexed: 01/09/2023]
Abstract
As one of the most important posttranslational modifications, protein phosphorylation plays an important role in vital movement. However, an efficiency enrichment treatment prior to MS detection is still a crucial step to protein phosphorylation analysis. In this work, a novel hybrid microsphere for efficient phosphopeptide enrichment was prepared by reverse-phase suspension polymerization of cellulose derivative and chitosan. The microspheres bore different kinds of amine groups and the main enrichment mechanism was based on anion exchange. This approach exhibited high selectivity for phosphopeptides from β-casein, α-casein, and non-fat milk. Three phosphopeptides could still be detected when the amount of β-casein was as low as 10 fmol. This study demonstrated a new attractive solid-phase support for phosphopeptide enrichment to meet the increasing need of phosphoproteomics analysis.
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Affiliation(s)
- Lili Dai
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, Hubei, 430072, China
| | - Shanxia Jin
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, Hubei, 430072, China
| | - Mengying Fan
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, Hubei, 430072, China
| | - Ping Zhou
- Key Laboratory of Analytical Chemistry for Biology and Medicine (Ministry of Education), College of Chemistry and Molecular Sciences, Wuhan University, Wuhan, Hubei, 430072, China.
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5
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Li XS, Yuan BF, Feng YQ. Recent advances in phosphopeptide enrichment: Strategies and techniques. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2015.11.001] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Enrichment of phosphorylated peptides and proteins by selective precipitation methods. Bioanalysis 2015; 7:243-52. [PMID: 25587840 DOI: 10.4155/bio.14.281] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Protein phosphorylation is one of the most prominent post-translational modifications involved in the regulation of cellular processes. Fundamental understanding of biological processes requires appropriate bioanalytical methods for selectively enriching phosphorylated peptides and proteins. Most of the commonly applied enrichment approaches include chromatographic materials including Fe(3+)-immobilized metal-ion affinity chromatography or metal oxides. In the last years, the introduction of several non-chromatographic isolation technologies has increasingly attracted the interest of many scientists. Such approaches are based on the selective precipitation of phosphorylated peptides and proteins by applying various metal cations. The excellent performance of precipitation-based enrichment methods can be explained by the absence of any stationary phase, resin or sorbent, which usually leads to unspecific binding. This review provides an overview of recently published methods for the selective precipitation of phosphorylated peptides and proteins.
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7
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Wang ZG, Lv N, Bi WZ, Zhang JL, Ni JZ. Development of the affinity materials for phosphorylated proteins/peptides enrichment in phosphoproteomics analysis. ACS APPLIED MATERIALS & INTERFACES 2015; 7:8377-92. [PMID: 25845677 DOI: 10.1021/acsami.5b01254] [Citation(s) in RCA: 97] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Reversible protein phosphorylation is a key event in numerous biological processes. Mass spectrometry (MS) is the most powerful analysis tool in modern phosphoproteomics. However, the direct MS analysis of phosphorylated proteins/peptides is still a big challenge because of the low abundance and insufficient ionization of phosphorylated proteins/peptides as well as the suppression effects of nontargets. Enrichment of phosphorylated proteins/peptides by affinity materials from complex biosamples is the most widely used strategy to enhance the MS detection. The demand of efficiently enriching phosphorylated proteins/peptides has spawned diverse affinity materials based on different enrichment principles (e.g., electronic attraction, chelating). In this review, we summarize the recent development of various affinity materials for phosphorylated proteins/peptides enrichment. We will highlight the design and fabrication of these affinity materials, discuss the enrichment mechanisms involved in different affinity materials, and suggest the future challenges and research directions in this field.
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Affiliation(s)
- Zhi-Gang Wang
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Nan Lv
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Wen-Zhi Bi
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Ji-Lin Zhang
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
| | - Jia-Zuan Ni
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- §College of Life Science, Shenzhen University, Shenzhen 518060, P. R. China
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Zhang M, Qiu H. Progress in stationary phases modified with carbonaceous nanomaterials for high-performance liquid chromatography. Trends Analyt Chem 2015. [DOI: 10.1016/j.trac.2014.10.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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9
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Fischnaller M, Köck R, Bakry R, Bonn GK. Enrichment and desalting of tryptic protein digests and the protein depletion using boron nitride. Anal Chim Acta 2014; 823:40-50. [DOI: 10.1016/j.aca.2014.03.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Revised: 03/05/2014] [Accepted: 03/07/2014] [Indexed: 12/14/2022]
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10
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Liu H, Guo Y, Wang X, Liang X, Liu X, Jiang S. A novel fullerene oxide functionalized silica composite as stationary phase for high performance liquid chromatography. RSC Adv 2014. [DOI: 10.1039/c4ra01408a] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
An FO/SiO2 composite was successfully synthesized and revealed good separation for four kinds of hydrophilic compounds in HILIC.
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Affiliation(s)
- Houmei Liu
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
- University of the Chinese Academy of Sciences
| | - Yong Guo
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
| | - Xusheng Wang
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
| | - Xiaojing Liang
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
| | - Xia Liu
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
| | - Shengxiang Jiang
- Key Laboratory for Natural Medicine of Gansu Province
- Lanzhou Institute of Chemical Physics
- Chinese Academy of Sciences
- Lanzhou 730000, China
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11
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Buchowiecka AK. Puzzling over protein cysteine phosphorylation – assessment of proteomic tools for S-phosphorylation profiling. Analyst 2014; 139:4118-23. [DOI: 10.1039/c4an00724g] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The article provides useful information necessary for designing experiments in the emerging cysteine phosphoproteomics.
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Affiliation(s)
- A. K. Buchowiecka
- Institute of Technical Biochemistry
- Lodz University of Technology
- 90-924 Lodz, Poland
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