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Feng Y, Cui J, Xu B, Jiang Y, Fu C, Tan L. A Potentially Practicable Halotolerant Yeast Meyerozyma guilliermondii A4 for Decolorizing and Detoxifying Azo Dyes and Its Possible Halotolerance Mechanisms. J Fungi (Basel) 2023; 9:851. [PMID: 37623622 PMCID: PMC10456123 DOI: 10.3390/jof9080851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 08/09/2023] [Accepted: 08/14/2023] [Indexed: 08/26/2023] Open
Abstract
In this study, a halotolerant yeast that is capable of efficiently decolorizing and detoxifying azo dyes was isolated, identified and characterized for coping with the treatment of azo-dye-containing wastewaters. A characterization of the yeast, including the optimization of its metabolism and growth conditions, its detoxification effectiveness and the degradation pathway of the target azo dye, as well as a determination of the key activities of the enzyme, was performed. Finally, the possible halotolerance mechanisms of the yeast were proposed through a comparative transcriptome analysis. The results show that a halotolerant yeast, A4, which could decolorize various azo dyes, was isolated from a marine environment and was identified as Meyerozyma guilliermondii. Its optimal conditions for dye decolorization were ≥1.0 g/L of sucrose, ≥0.2 g/L of (NH4)2SO4, 0.06 g/L of yeast extract, pH 6.0, a temperature of 35 °C and a rotation speed of ≥160 rpm. The yeast, A4, degraded and detoxified ARB through a series of steps, relying on the key enzymes that might be involved in the degradation of azo dye and aromatic compounds. The halotolerance of the yeast, A4, was mainly related to the regulation of the cell wall components and the excessive uptake of Na+/K+ and/or compatible organic solutes into the cells under different salinity conditions. The up-regulation of genes encoding Ca2+-ATPase and casein kinase II as well as the enrichment of KEGG pathways associated with proteasome and ribosome might also be responsible for its halotolerance.
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Affiliation(s)
- Yue Feng
- Key Laboratory of Plant Biotechnology of Liaoning Province, School of Life Science, Liaoning Normal University, Dalian 116081, China; (Y.F.); (J.C.); (Y.J.); (C.F.)
| | - Jingru Cui
- Key Laboratory of Plant Biotechnology of Liaoning Province, School of Life Science, Liaoning Normal University, Dalian 116081, China; (Y.F.); (J.C.); (Y.J.); (C.F.)
| | - Bingwen Xu
- Dalian Center for Certification and Food and Drug Control, Dalian 116037, China;
| | - Yifan Jiang
- Key Laboratory of Plant Biotechnology of Liaoning Province, School of Life Science, Liaoning Normal University, Dalian 116081, China; (Y.F.); (J.C.); (Y.J.); (C.F.)
| | - Chunqing Fu
- Key Laboratory of Plant Biotechnology of Liaoning Province, School of Life Science, Liaoning Normal University, Dalian 116081, China; (Y.F.); (J.C.); (Y.J.); (C.F.)
| | - Liang Tan
- Key Laboratory of Plant Biotechnology of Liaoning Province, School of Life Science, Liaoning Normal University, Dalian 116081, China; (Y.F.); (J.C.); (Y.J.); (C.F.)
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Basharat Z, Asghar S, Yasmin A. Leveraging molecular docking to understand Congo red degradation by Staphylococcus caprae MB400. Arch Microbiol 2023; 205:250. [PMID: 37243783 DOI: 10.1007/s00203-023-03591-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/11/2023] [Accepted: 05/18/2023] [Indexed: 05/29/2023]
Abstract
Congo red (CR) is a genotoxic, sulphonated azo dye and poses significant pollution problem. We hereby report its degradation by Staphylococcus caprae MB400. The bacterium initially propagated as a suspected contaminant upon CR dye supplemented nutrient agar plates, forming zones of clearance around its growth area. The bacterium was purified, gram stained and identified as Staphylococcus caprae via 16S rRNA gene sequencing. Dye decolourization was analysed in liquid culture, and Fourier-transform infrared spectroscopy (FTIR) was conducted for analysis of degraded product/metabolites. A decolourization of ~ 96.0% at 100 µg/ml concentration and pH 7 after 24 h of incubation was observed. Structure of the azoreductase enzyme, responsible for breakage of the bond in the dye and ultimately decolourization, was predicted, and molecular docking was harnessed for understanding the mechanism behind the reduction of azo bond (-N=N-) and conversion to metabolites. Our analysis revealed 12 residues critical for structural interaction of the azoreductase enzyme with this dye. Among these, protein backbone region surrounding four residues, i.e. Lys65, Phe122, Ile166 and Phe169, showed major displacement changes, upon binding with the dye. However, overall the conformational changes were not large.
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Affiliation(s)
- Zarrin Basharat
- Alpha Genomics (Private) Limited, Islamabad, 45710, Pakistan.
| | - Sehrish Asghar
- Environmental Science Program, College of Natural Resources, University of Idaho, Moscow, ID, 83843, USA
| | - Azra Yasmin
- Microbiology and Biotechnology Research Lab, Department of Biotechnology, Fatima Jinnah Women University, Rawalpindi, 46000, Pakistan.
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Zhang B, Fan J, Li W, Lens PNL, Shi W. Low salinity enhances azo dyes degradation in aerobic granular sludge systems: Performance and mechanism analysis. BIORESOURCE TECHNOLOGY 2023; 372:128678. [PMID: 36706820 DOI: 10.1016/j.biortech.2023.128678] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Revised: 01/19/2023] [Accepted: 01/22/2023] [Indexed: 06/18/2023]
Abstract
The biodegradation performance of azo dyes can be enhanced under low salinity conditions, but the internal biodegradation mechanism is still unclear. Aerobic granular sludge (AGS), a salt-tolerant biological wastewater treatment technology, was used in this study to explore the enhancement mechanism of acid orange 7 (AO7) degradation at low salinity level (1.0 %). Results indicated that the AGS structure and reactor performance were almost unaffected by different AO7 concentrations (5-10 mg/L). Compared with salt-free conditions, the AO7 removal efficiency was elevated by 9.9 %-19.0 % at 1.0 % salinity level, owing to the enrichment of AO7 decolorizing bacteria (e.g. Acinetobacter) and functional enzymes (e.g. FMN-dependent azoreductase). The up-regulated genes involving in the key metabolic functions (e.g. carbon metabolism and oxidative phosphorylation) promoted the electron and energy production, thereby facilitating the AO7 decolorization and degradation. These results aid understanding of the enhancement mechanism of AO7 biodegradation under low salinity conditions from macroscopic and microscopic perspectives.
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Affiliation(s)
- Bing Zhang
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China.
| | - Jiawei Fan
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Wei Li
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
| | - Piet N L Lens
- UNESCO-IHE, Institute for Water Education, Westvest 7, 2601 DA Delft, the Netherlands
| | - Wenxin Shi
- College of Environment and Ecology, Chongqing University, Chongqing 400044, China
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Oliveira JMS, Poulsen JS, Foresti E, Nielsen JL. Microbial communities and metabolic pathways involved in reductive decolorization of an azo dye in a two-stage AD system. CHEMOSPHERE 2023; 310:136731. [PMID: 36209855 DOI: 10.1016/j.chemosphere.2022.136731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 08/10/2022] [Accepted: 10/01/2022] [Indexed: 06/16/2023]
Abstract
Multiple stage anaerobic system was found to be an effective strategy for reductive decolorization of azo dyes in the presence of sulfate. Bulk color removal (56-90%) was achieved concomitant with acidogenic activity in the 1st-stage reactor (R1), while organic matter removal (≤100%) and sulfate reduction (≤100%) occurred predominantly in the 2nd-stage reactor (R2). However, azo dye reduction mechanism and metabolic routes involved remain unclear. The involved microbial communities and conditions affecting the azo dye removal in a two-stage anaerobic digestion (AD) system were elucidated using amplicon sequencing (16S rRNA, fhs, dsrB and mcrA) and correlation analysis. Reductive decolorization was found to be co-metabolic and mainly associated with hydrogen-producing pathways. We also found evidence of the involvement of an azoreductase from Lactococcus lactis. Bacterial community in R1 was sensitive and shifted in the presence of the azo dye, while microorganisms in R2 were more protected. Higher diversity of syntrophic-acetate oxidizers, sulfate reducers and methanogens in R2 highlights the role of the 2nd-stage in organic matter and sulfate removals, and these communities might be involved in further transformations of the azo dye reduction products. The results improve our understanding on the role of different microbial communities in anaerobic treatment of azo dyes and can help in the design of better solutions for the treatment of textile effluents.
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Affiliation(s)
- J M S Oliveira
- Biological Processes Laboratory (LPB), São Carlos School of Engineering (EESC), University of São Paulo (USP), 1100 João Dagnone Avenue, 13563-120, São Carlos, SP, Brazil; Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, DK-9220 Aalborg, Denmark
| | - J S Poulsen
- Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, DK-9220 Aalborg, Denmark
| | - E Foresti
- Biological Processes Laboratory (LPB), São Carlos School of Engineering (EESC), University of São Paulo (USP), 1100 João Dagnone Avenue, 13563-120, São Carlos, SP, Brazil
| | - J L Nielsen
- Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, DK-9220 Aalborg, Denmark.
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Pant A, Maiti TK, Mahajan D, Das B. Human Gut Microbiota and Drug Metabolism. MICROBIAL ECOLOGY 2022:1-15. [PMID: 35869999 PMCID: PMC9308113 DOI: 10.1007/s00248-022-02081-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Accepted: 07/18/2022] [Indexed: 05/31/2023]
Abstract
The efficacy of drugs widely varies in individuals, and the gut microbiota plays an important role in this variability. The commensal microbiota living in the human gut encodes several enzymes that chemically modify systemic and orally administered drugs, and such modifications can lead to activation, inactivation, toxification, altered stability, poor bioavailability, and rapid excretion. Our knowledge of the role of the human gut microbiome in therapeutic outcomes continues to evolve. Recent studies suggest the existence of complex interactions between microbial functions and therapeutic drugs across the human body. Therapeutic drugs or xenobiotics can influence the composition of the gut microbiome and the microbial encoded functions. Both these deviations can alter the chemical transformations of the drugs and hence treatment outcomes. In this review, we provide an overview of (i) the genetic ecology of microbially encoded functions linked with xenobiotic degradation; (ii) the effect of drugs on the composition and function of the gut microbiome; and (iii) the importance of the gut microbiota in drug metabolism.
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Affiliation(s)
- Archana Pant
- Molecular Genetics Lab, National Institute of Immunology, New Delhi, Delhi-110067, India
- Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad-121001, India
- Molecular Genetics Laboratory, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, PO box, Gurgaon Expressway, #04 Faridabad-121001, Haryana, India
| | - Tushar K Maiti
- Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad-121001, India
| | - Dinesh Mahajan
- Chemistry and Pharmacology Lab, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad, India
| | - Bhabatosh Das
- Molecular Genetics Laboratory, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd Milestone, PO box, Gurgaon Expressway, #04 Faridabad-121001, Haryana, India.
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Nguyen TH, Watari T, Hatamoto M, Setiadi T, Yamaguchi T. Enhanced decolorization of dyeing wastewater in a sponges-submerged anaerobic reactor. CHEMOSPHERE 2021; 279:130475. [PMID: 34134399 DOI: 10.1016/j.chemosphere.2021.130475] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 03/26/2021] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
This study was conducted to assess the potential of a sponges-submerged anaerobic baffled reactor (SS-ABR) for enhancing the processing performance of azo dye-contaminated wastewater. A lab-scale four-compartment SS-ABR, with a total volume of 10 L, was operated at 30 °C for 180 days. A total of 14 polyurethane sponges were added in each compartment to treat synthetic wastewater including a commercial azo dye Hellozol HSR Reactive Black. During the entire operation, in synthetic wastewater, starch was used as a sole carbon source, and the true color level was maintained at 1050 ± 98 Pt/Co. Meanwhile, the hydraulic retention time (HRT) and total COD (T-COD) in the influent were changed to evaluate the SS-ABR treatment performance. After the start-up phase, true color and T-COD removal efficiencies were recorded as 65 ± 3% and 83 ± 2%, 68 ± 5% and 81 ± 4%, and 70 ± 5% and 84 ± 2% for HRT and influent T-COD concentration of 18.6 h and 260 mg L-1, 14.6 h and 260 mg L-1, and 14.6 h and 460 mg L-1, respectively. The microbial community analysis showed that bacterial groups involved in dye degradation, such as Clostridium sp., and sulfate-reducing bacteria Desulfomonile sp. and Desulfovibrio sp. were detected prominently in the SS-ABR. Interestingly, the SS-ABR exhibited the dominance of both Geobacter sp. and Methanosarcina sp., and their occurrences in all columns were proportional to each other, revealing the formation of syntrophic relationships.
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Affiliation(s)
- Thu Huong Nguyen
- Department of Science of Technology Innovation, Nagaoka University of Technology, Niigata, 940-2188, Japan
| | - Takahiro Watari
- Department of Civil and Environmental Engineering, Nagaoka University of Technology, Niigata, 940-2188, Japan; Department of Chemical Engineering, Hanoi University of Science and Technology, Hanoi, Viet Nam
| | - Masashi Hatamoto
- Department of Civil and Environmental Engineering, Nagaoka University of Technology, Niigata, 940-2188, Japan
| | - Tjandra Setiadi
- Department of Chemical Engineering, Institut Teknologi Bandung, Bandung 40132, Indonesia; Center for Environmental Studies (PSLH), Institut Teknologi Bandung, Bandung, 40135, Indonesia
| | - Takashi Yamaguchi
- Department of Science of Technology Innovation, Nagaoka University of Technology, Niigata, 940-2188, Japan; Department of Civil and Environmental Engineering, Nagaoka University of Technology, Niigata, 940-2188, Japan.
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Guo Y, Lee H, Jeong H. Gut microbiota in reductive drug metabolism. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2020; 171:61-93. [PMID: 32475528 DOI: 10.1016/bs.pmbts.2020.04.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Gut bacteria are predominant microorganisms in the gut microbiota and have been recognized to mediate a variety of biotransformations of xenobiotic compounds in the gut. This review is focused on one of the gut bacterial xenobiotic metabolisms, reduction. Xenobiotics undergo different types of reductive metabolisms depending on chemically distinct groups: azo (-NN-), nitro (-NO2), alkene (-CC-), ketone (-CO), N-oxide (-NO), and sulfoxide (-SO). In this review, we have provided select examples of drugs in six chemically distinct groups that are known or suspected to be subjected to the reduction by gut bacteria. For some drugs, responsible enzymes in specific gut bacteria have been identified and characterized, but for many drugs, only circumstantial evidence is available that indicates gut bacteria-mediated reductive metabolism. The physiological roles of even known gut bacterial enzymes have not been well defined.
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Affiliation(s)
- Yukuang Guo
- Department of Pharmaceutical Sciences, Center for Biomolecular Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, IL, United States
| | - Hyunwoo Lee
- Department of Pharmaceutical Sciences, Center for Biomolecular Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, IL, United States.
| | - Hyunyoung Jeong
- Department of Pharmaceutical Sciences, Center for Biomolecular Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, IL, United States.
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Chen Y, Zhang L, Feng L, Chen G, Wang Y, Zhai Z, Zhang Q. Exploration of the key functional strains from an azo dye degradation microbial community by DGGE and high-throughput sequencing technology. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:24658-24671. [PMID: 31236867 DOI: 10.1007/s11356-019-05781-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2019] [Accepted: 06/17/2019] [Indexed: 06/09/2023]
Abstract
This study investigated a previously developed thermophilic microbial community with the ability to effectively degrade azo dyes. To identify the key microbes of this microbial community, a dilution-to-extinction approach was combined with polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) and Illumina high-throughput sequencing technology (HTST). Strains belonging to Tepidiphilus sp. almost disappeared from the degradation solution at dilution ratios above 10-7; furthermore, at this ratio, the diluted microbial community almost lost their decolorization ability, indicating this ratio as the critical point for effective azo dye decolorization. Strains belonging to Tepidiphilus sp. were indicated as possible key functional microbes of this microbial community for effective azo dye decolorization. Moreover, the synergistic action of other microbes, such as Anoxybacillus sp., Clostridium sp., and Bacillus sp., was suggested to further promote the decolorization process by secreting azoreductase and laccase. Caloramator spp. were found have the ability to degrade proteins and amino acids, which might promote the degradation process with further degradation microbes. The loss of these bacteria might diminish the synergistic relationships among different strains, which further results in the failure of efficient azo dye decolorization and degradation by this microbial community.
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Affiliation(s)
- Yan Chen
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China
| | - Lizhen Zhang
- College of Animal Science and Technology, Jiangxi Agricultural University, Nanchang, 330045, People's Republic of China
| | - Linlin Feng
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China
| | - Guotao Chen
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China
| | - Yuanxiu Wang
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China
| | - Zhijun Zhai
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China
| | - Qinghua Zhang
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi Engineering Laboratory for the Development and Utilization of Agricultural Microbial Resources, Nanchang, 330045, People's Republic of China.
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Zhang Q, Xie X, Liu Y, Zheng X, Wang Y, Cong J, Yu C, Liu N, Liu J, Sand W. Fructose as an additional co-metabolite promotes refractory dye degradation: Performance and mechanism. BIORESOURCE TECHNOLOGY 2019; 280:430-440. [PMID: 30784993 DOI: 10.1016/j.biortech.2019.02.046] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 02/07/2019] [Accepted: 02/08/2019] [Indexed: 06/09/2023]
Abstract
In this work, the performance and mechanism for the boosting effects of fructose as an additional co-metabolite towards the biological treatment of reactive black 5 were systematically investigated. A decolorization efficiency of 98% was obtained in sample FRU200 (with 3 g/L fructose added based on 3 g/L yeast extract), which was 21% higher than that without fructose. Several intermediates with low molecular weight generated in sample FRU200 and different metabolic pathways were deduced. The bacterial community structure significantly changed due to fructose addition. Label-free quantitative proteomic approach suggested that several up-regulated proteins in sample FRU200 might play essential roles during the degradation. Furthermore, the mechanisms of RB5 degradation by proteins/enzymes of the dominant species in flora DDMZ1 were proposed. This work deepens our understanding of the molecular and ecological mechanism of fructose as co-metabolite enhancing the biodegradation of refractory organic pollutants by a natural bacterial flora.
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Affiliation(s)
- Qingyun Zhang
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Xuehui Xie
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
| | - Yanbiao Liu
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Xiulin Zheng
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Yiqin Wang
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Junhao Cong
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Chengzhi Yu
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Na Liu
- School of Environment and Surveying Engineering, Suzhou University, Suzhou, Anhui 234000, China
| | - Jianshe Liu
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Wolfgang Sand
- Textile Pollution Controlling Engineering Center of Ministry of Environmental Protection, College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China; Institute of Biosciences, Freiberg University of Mining and Technology, Freiberg 09599, Germany; Biofilm Centre, University Duisburg-Essen, Essen, Germany
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Suzuki H. Remarkable diversification of bacterial azoreductases: primary sequences, structures, substrates, physiological roles, and biotechnological applications. Appl Microbiol Biotechnol 2019; 103:3965-3978. [PMID: 30941462 DOI: 10.1007/s00253-019-09775-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 03/13/2019] [Accepted: 03/15/2019] [Indexed: 12/12/2022]
Abstract
Azoreductases reductively cleave azo linkages by using NAD(P)H as an electron donor. The enzymes are widely found in bacteria and act on numerous azo dyes, which allow various unique applications. This review describes primary amino acid sequences, structures, substrates, physiological roles, and biotechnological applications of bacterial azoreductases to discuss their remarkable diversification. According to primary sequences, azoreductases were classified phylogenetically into four main clades. Most members of clades I-III are flavoproteins, whereas clade IV members include flavin-free azoreductases. Clades I and II prefer NADPH and NADH, respectively, as electron donors, whereas other members generally use both. Several enzymes formed no clades; moreover, some bacteria produce azoreductases with longer primary structures than those hitherto identified, which implies further diversification of bacterial azoreductases. The crystal structures commonly reveal the Rossmann folds; however, ternary structures are moderately varied with different quaternary conformation. Although physiological roles are obscure, several azoreductases have been shown to act on metabolites such as flavins, quinones, and metal ions more efficiently than on azo dyes. Considering that many homologs exclusively act on these metabolites, it is possible that azoreductases are actually side activities of versatile reductases that act on various substrates with different specificities. In parallel, this idea raises the possibility that homologous enzymes, even if these are already defined as other types of reductases, widely harbor azoreductase activities. Although azoreductases for which their genes have been identified are not abundant, it may be simple to identify azoreductases of biotechnological importance that have novel substrate specificities.
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Affiliation(s)
- Hirokazu Suzuki
- Faculty of Engineering, Tottori University, 4-101 Koyama-Minami, Tottori, 680-8552, Japan. .,Center for Research on Green Sustainable Chemistry, Tottori University, 4-101 Koyama-Minami, Tottori, 680-8552, Japan.
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Ryan A. Azoreductases in drug metabolism. Br J Pharmacol 2016; 174:2161-2173. [PMID: 27487252 DOI: 10.1111/bph.13571] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Revised: 07/27/2016] [Accepted: 07/29/2016] [Indexed: 02/06/2023] Open
Abstract
Azoreductases are flavoenzymes that have been characterized in a range of prokaryotes and eukaryotes. Bacterial azoreductases are associated with the activation of two classes of drug, azo drugs for the treatment of inflammatory bowel disease and nitrofuran antibiotics. The mechanism of reduction of azo compounds is presented; it requires tautomerisation of the azo compound to a quinoneimine and provides a unifying mechanism for the reduction of azo and quinone substrates by azoreductases. The importance of further work in the characterization of azoreductases from enteric bacteria is highlighted to aid in the development of novel drugs for the treatment of colon related disorders. Human azoreductases are known to play a crucial role in the metabolism of a number of quinone-containing cancer chemotherapeutic drugs. The mechanism of hydride transfer to quinones, which is shared not only between eukaryotic and prokaryotic azoreductases but also the wider family of NAD(P)H quinone oxidoreductases, is outlined. The importance of common single nucleotide polymorphisms (SNPs) in human azoreductases is described not only in cancer prognosis but also with regard to their effects on the efficacy of quinone drug-based cancer chemotherapeutic regimens. This highlights the need to screen patients for azoreductase SNPs ahead of treatment with these regimens. LINKED ARTICLES This article is part of a themed section on Drug Metabolism and Antibiotic Resistance in Micro-organisms. To view the other articles in this section visit http://onlinelibrary.wiley.com/doi/10.1111/bph.v174.14/issuetoc.
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Affiliation(s)
- Ali Ryan
- Faculty of Science, Engineering and Computing, Kingston University, Kingston upon Thames, UK
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Morrison JM, John GH. Growth and physiology of Clostridium perfringens wild-type and ΔazoC knockout: an azo dye exposure study. Microbiology (Reading) 2016; 162:330-338. [DOI: 10.1099/mic.0.000212] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Jessica M. Morrison
- Department of Microbiology and Molecular Genetics,Oklahoma State University, 307 Life Science East, Stillwater, OK 74074,USA
| | - Gilbert H. John
- Department of Microbiology and Molecular Genetics,Oklahoma State University, 307 Life Science East, Stillwater, OK 74074,USA
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