Investigation on methane yield of wheat husk anaerobic digestion and its enhancement effect by liquid digestate pretreatment

Comparative genomic analysis of an emerging Pseudomonadaceae member, Thiopseudomonas alkaliphila

Thiopseudomonas alkaliphila, an organism recently classified within the Pseudomonadaceae family, has been detected in diverse sources such as human tissues, animal guts, industrial fermenters, and decomposition environments, suggesting a diverse ecological role. However, a large knowledge gap exists in how T. alkaliphila functions. In this comparative genomic analysis, adaptations indicative of habitat specificity among strains and genomic similarity to known opportunistic pathogens are revealed. Genomic investigation reveals a core metabolic utilization of multiple oxidative and non-oxidative catabolic pathways, suggesting adaptability to varied environments and carbon sources. The genomic repertoire of T. alkaliphila includes secondary metabolites, such as antimicrobials and siderophores, indicative of its involvement in microbial competition and resource acquisition. Additionally, the presence of transposases, prophages, plasmids, and Clustered Regularly Interspaced Short Palindromic Repeats-Cas systems in T. alkaliphila genomes suggests mechanisms for horizontal gene transfer and defense against viral predation. This comprehensive genomic analysis expands our understanding on the ecological functions, community interactions, and potential virulence of T. alkaliphila, while emphasizing its adaptability and diverse capabilities across environmental and host-associated ecosystems.IMPORTANCEAs the microbial world continues to be explored, new organisms will emerge with beneficial and/or pathogenetic impact. Thiopseudomonas alkaliphila is a species originally isolated from clinical human tissue and fluid samples but has not been attributed to disease. Since its classification, T. alkaliphila has been found in animal guts, animal waste, decomposing remains, and biogas fermentation reactors. This is the first study to provide an in-depth view of the metabolic potential of publicly available genomes belonging to this species through a comparative genomics and draft pangenome calculation approach. It was found that T. alkaliphila is metabolically versatile and likely adapts to diverse energy sources and environments, which may make it useful for bioremediation and in industrial settings. A range of virulence factors and antibiotic resistances were also detected, suggesting T. alkaliphila may operate as an undescribed opportunistic pathogen.

Effects of Fe3O4 nanoparticles on anaerobic digestion enzymes and microbial community of sludge

Fe₃O₄ nanoparticles (NPs) have potential effects on the anaerobic digestion of excess sludge. The effects of different concentrations of Fe₃O₄ NPs (0, 100, 200, 400 and 600 mg/L) on enzymes and microorganisms in anaerobic digestion were studied to explore the mechanism of the effect of Fe₃O₄ NPs on anaerobic digestion. The results showed that 100, 200 and 400 mg/L Fe₃O₄ NPs could promote anaerobic digestion, and 200 mg/L Fe₃O₄ NPs had the most obvious promoting effect. The activities of protease, cellulase, dehydrogenase, acetic kinase and coenzyme F420 in the 200 mg/L Fe₃O₄ NPs group reached 120 U/mg VS, 71.75 U/g VS, 135 U/mL, 94 mol/L, 1.37 umol/g VSS, respectively, which were 3.8, 1.5, 1.2, 1.2 and 1.6 times of the blank group, respectively. However, when the concentration of Fe₃O₄ NPs reached 600 mg/L, the activities of cellulase, dehydrogenase and acetic kinase were lower than those of the blank group, and anaerobic digestion was inhibited. The above conclusions can also be confirmed by high-throughput sequencing. The abundance of longilinea and ornatilina in the 200 mg/L Fe₃O₄ NPs group was 8.8% and 4.1% respectively, and methanthrix abundance was 69%, which was more conducive to decomposition acetic acid into CH₄.Highlights To explore the effects of Fe3O4 NPS on enzyme activity and microorganisms.200mg/L Fe₃O₄ NPs could significantly promote the activity of enzyme.200mg/L Fe₃O₄ NPs could promote the diversity of bacterial and archaeal communities.600mg/L Fe₃O₄ NPs could inhibit some enzyme activities and microbial community diversity.

Roles of zero-valent iron in anaerobic digestion: Mechanisms, advances and perspectives

With the rapid growth of population and urbanization, more and more bio-wastes have been produced. Considering organics contained in bio-wastes, to recover resource from bio-wastes is of great significance, which can not only achieve the resource recycle, but also protect the environment. Anaerobic digestion (AD) has been proved as one of the most promising strategies to recover bio-energy from bio-wastes, as well as to realize the reduction of bio-wastes. However, the conventional interspecies electron transfer is sensitive to environmental shocks, such as high ammonia, organic pollutants, metal ions, etc., which lead to instability or failure of AD. The recent findings have proved that the introduction of zero-valent iron (ZVI) in AD system can significantly enhance methane production from bio-wastes. This review systematically highlighted the recent advances on the roles of ZVI in AD, including underlying mechanisms of ZVI on AD, performance enhancement of AD contributed by ZVI, and impact factors of AD regulated by ZVI. Furthermore, current limitations and outlooks have been analyzed and concluded. The roles of ZVI on underlying mechanisms in AD include regulating reaction conditions, electron transfer mode and function of microbial communities. The addition of ZVI in AD can not only enhance bio-energy recovery and toxic contaminants removal from bio-wastes, but also have the potential to buffer adverse effect caused by inhibitors. Moreover, the electron transfer modes induced by ZVI include both interspecies hydrogen transfer and direct interspecies electron transfer pathways. How to comprehensively evaluate the effects of ZVI on AD and further improve the roles of ZVI in AD is urgently needed for practical application of ZVI in AD. This review aims to provide some references for the introduction of ZVI in AD for enhancing bio-energy recovery from bio-wastes.

Combined modifications of CaO and liquid fraction of digestate for augmenting volatile fatty acids production from rice straw: Microbial and proteomics insights

The modification sequence of chemical (CaO) and biological (liquid fraction of digestate, LFD) for augmenting volatile fatty acids (VFAs) production from rice straw was investigated in this study. The coupling order of the modifiers influenced acidification performance, and simultaneous modification (CaO-LFD) was superior to other modes. The highest VFAs production was obtained in CaO-LFD, 51% higher than that in the LFD-first additional modification. The CaO-LFD demonstrated the highest selectivity of acetate production, accounting for 79% of the total VFAs. In addition, CaO-LFD modification changed the direction of the domestication of fermentative bacteria and increased populations of the key anaerobes (Atopostipes sp.) responsible for acidification. The synergistic effect of CaO and LFD was revealed, namely, the effective function of CaO in degrading recalcitrant rice straw, the promotion of transport/metabolism of carbohydrates and acetogenesis by LFD.

Effect of wheat straw pretreated with liquid fraction of digestate from different substrates on anaerobic digestion performance and microbial community characteristics

The effects of liquid fraction of digestate (LFD) pretreatment on anaerobic digestion (AD) performance and microbial community characteristics were estimated. Prior to AD, LFD (LFD_SM, LFD_FW, and LFD_WS) collected separately from three continuously stirred tank reactors (CSTRs) using swine manure (SM), food waste (FW), and wheat straw (WS) as the mono-substrate was applied to pretreat WS. The results showed that AD with LFD pretreatment resulted in biomethane yields of 240.2-277.9 mL·gVS^-1, a 33.57%-54.54% improvement over the yield of the control, and also produced a time saving of 32.26%-46.77%. The pretreatment parameters were optimized for LFD pretreatment. The enhancement effect was in the order of LFD_FW > LFD_SM > LFD_WS. Simultaneously, the cellulose, hemicellulose and lignin contents in the WS and their characteristics (surface properties, crystallinity index, etc.) varied accordingly. The function of the microbial community was strengthened during the pretreatment stage, but the structure of the microbial community had a clear response to the LFD source substrates. Bacteroidetes was the most dominant phyla and was positively correlated with the hydrolysis rate. Consequently, the LFD from the different substrates used as pretreat agents could improve the AD performance of WS.

Assessment of different mechanical treatments for improving the anaerobic biodegradability of residual raspberry extrudate

Mechanical treatments can be simple and feasible methods for enhancing the anaerobic digestion of lignocellulosic substrates. This work aims to relate the direct effect of five different mechanical treatments, i.e., variation in the size and number of particles, with the variations in the chemical composition and, subsequently, the effect over the anaerobic digestion of residual raspberry extrudate, which was used as a model substrate. A high variation in the number of particles and the particle size distribution was achieved depending on the mechanical treatment applied, reaching the highest number of particles for the treatments with knife mills and mortar (around 8000 particles per gram). The higher number of particles was related to higher solubilisation, including phenolic compounds and sugars. The combination of knife mills and mortar pretreatment, which presented the highest number of particles, resulted in a 66% more of polyphenols in comparison to the raw substrate. However, the presence of anthocyanins was higher in mechanical treatments with less effect. The enhancement of the anaerobic digestion was clearly related to the increment in the number of particles of small size after the mechanical treatments. The highest methane yield coefficient (236 ± 11 mL CH₄/g volatile solids) was achieved for the raspberry extrudate treated with knife mills.

Evaluation of methane production from the anaerobic co-digestion of manure of guinea pig with lignocellulosic Andean residues

The objective of this research was to evaluate anaerobic co-digestion of guinea pig manure (GP) with Andean agricultural residues such as amaranth (AM), quinoa (QU) and wheat (TR) in batch biodigesters under mesophilic conditions (37 ⁰C) for 40 days. As microbial inoculum, sewage treatment sludge was used in two inoculum/substrate ratios (ISR of 1 and 2). In terms of methane production, the best results occurred in treatments containing AM and QU as co-substrate and an ISR of 2. Thus, the highest methane production yield in the GP:AM biodigesters (25:75) and GP:QU (25:75) with 341.86 mlCH₄/g VS added and 341.05 mlCH₄/g VS added, respectively. On the other hand, the results showed that methane production with an ISR of 2 generated higher yields for guinea pig waste and the methane fraction of the biogas generated was in a range from 57 to 69%. Methane production kinetics from these raw materials was studied using five kinetic models: modified Gompertz, logistic equation, transfer, cone and Richards. The cone model adjusted best to the experimental values ​​with those observed with r² of 0.999 and RMSE of 1.16 mlCH₄/g VS added. Finally, the highest biodegradability (experimental yield/theoretical yield) was obtained in the GP-AM biodigesters (25:75) with 67.92%.

Distribution patterns of functional microbial community in anaerobic digesters under different operational circumstances: A review

Anaerobic digestion (AD) processes are promising to effectively recover resources from organic wastes or wastewater. As a microbial-driven process, the functional anaerobic species played critical roles in AD. However, the lack of effective understanding of the correlations of varying microbial communities with different operational factors hinders the microbial regulation to improve the AD performance. In this paper, the main anaerobic functional microorganisms involved in different stages of AD processes were first demonstrated. Then, the response of anaerobic microbial community to different operating parameters, exogenous interfering substances and digestion substrates, as well as the digestion efficiency, were discussed. Finally, the research gaps and future directions on the understanding of functional microorganisms in AD were proposed. This review provides insightful knowledge of distribution patterns of functional microbial community in anaerobic digesters, and gives critical guidance to regulate and enrich specific functional microorganisms to accumulate certain AD products.

Effects of different pretreatment methods on biogas production and microbial community in anaerobic digestion of wheat straw

The pretreatment of wheat straw has been recognized to be an essential step prior to anaerobic digestion, owing to the high abundance of lignocellulosic materials. In order to choose economical and effective techniques for the disposal of wheat straw, effects of five pretreatment methods including acid, alkali, co-pretreatment of acid and alkali, CaO₂, and liquid digestate of municipal sewage sludge on anaerobic digestion of wheat straw were investigated by analyzing biogas production and organic matter degradation in the study. The results showed that among these pretreatment methods, the methane yield was highest in the liquid digestate pretreated-wheat straw with 112.6 mL g_TS^-1, followed by the acid, alkali, and CaO₂ pretreatments, and the lowest was observed in the co-pretreatment of acid and alkali. Illumina MiSeq sequencing of the microbial communities in the anaerobic digesters revealed that the genera Ruminiclostridium including Ruminiclostridium and Ruminiclostridium 1, Hydrogenispora, and Capriciproducens were the main hydrolytic bacteria, acidogenic bacteria, and acetogenic bacteria, respectively, in the anaerobic digesters. Capriciproducens and Hydrogenispora dominated in the first and the later stages, respectively, in the anaerobic digesters, which could work as indicators of the anaerobic co-digestion stage of sludge and wheat straw. The total solid and SO₄^2--S contents of the solid digestate and the NH₄⁺-N concentration of the liquid digestate had a significant influence on the microbial community in the digesters. These findings indicated that liquid digestate pretreatment was a potential option to improve the anaerobic digestion of wheat straw, due to the low cost without additional chemical agents.

Review and perspectives of enhanced volatile fatty acids production from acidogenic fermentation of lignocellulosic biomass wastes

Lignocellulosic biomass wastes are abundant resources that are usually valorized for methane-rich biogas via anaerobic digestion. Conversion of lignocellulose into volatile fatty acids (VFA) rather than biogas is attracting attention due to the higher value-added products that come with VFA utilization. This review consolidated the latest studies associated with characteristics of lignocellulosic biomass, the effects of process parameters during acidogenic fermentation, and the intensification strategies to accumulate more VFA. The differences between anaerobic digestion technology and acidogenic fermentation technology were discussed. Performance-enhancing strategies surveyed included (1) alkaline fermentation; (2) co-digestion and high solid-state fermentation; (3) pretreatments; (4) use of high loading rate and short retention time; (5) integration with electrochemical technology, and (6) adoption of membrane bioreactors. The recommended operations include: mesophilic temperature (thermophilic for high loading rate fermentation), C/N ratio (20-40), OLR (< 12 g volatile solids (VS)/(L·d)), and the maximum HRT (8-12 days), alkaline fermentation, membrane technology or electrodialysis recovery. Lastly, perspectives were put into place based on critical analysis on status of acidogenic fermentation of lignocellulosic biomass wastes for VFA production.

Impacts of Cellulase and Amylase on Enzymatic Hydrolysis and Methane Production in the Anaerobic Digestion of Corn Straw

The impacts of enzyme pre-treatments on anaerobic digestion of lignocellulosic biomass were explored by using corn straw as a substrate for enzyme pre-treatment and anaerobic digestion and by utilizing starch and microcrystalline cellulose as substrates for comparative analysis. The cellulase pre-treatment effectively improved the enzymatic hydrolysis of cellulose, decreased the crystallinity, and consequently showed 33.2% increase in methane yield. The methane yield of starch increased by 16.0% through amylase pre-treatment. However, when the substrate was corn straw, both the efficiencies of enzymes and methane production were markedly reduced by the lignocellulosic structure. The corn straw’s methane yields were 277.6 and 242.4 mL·CH4/g·VS with cellulase and amylase pre-treatment, respectively, which was 11.7% and 27.9% higher than that of the untreated corn straw. It may imply that the lignocellulose should be broken up firstly, enzyme pre-treatments could have great potentials when combined with other methods.