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Du Z, Nakagawa A, Fang J, Ridwan R, Astuti WD, Sarwono KA, Sofyan A, Widyastuti Y, Cai Y. Cleaner anaerobic fermentation and greenhouse gas reduction of crop straw. Microbiol Spectr 2024; 12:e0052024. [PMID: 38832787 DOI: 10.1128/spectrum.00520-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 05/01/2024] [Indexed: 06/05/2024] Open
Abstract
Rice anaerobic fermentation is a significant source of greenhouse gas (GHG) emissions, and in order to efficiently utilize crop residue resources to reduce GHG emissions, rice straw anaerobic fermentation was regulated using lactic acid bacteria (LAB) inoculants (FG1 and TH14), grass medium (GM) to culture LAB, and Acremonim cellulolyticus (AC). Microbial community, GHG emission, dry matter (DM) loss, and anaerobic fermentation were analyzed using PacBio single-molecule real-time and anaerobic fermentation system. The epiphytic microbial diversity of fresh rice straw was extremely rich and contained certain nutrients and minerals. During ensiling, large amounts of GHG such as carbon dioxide are produced due to plant respiration, enzymatic hydrolysis reactions, and proliferation of aerobic bacteria, resulting in energy and DM loss. Addition of FG1, TH14, and AC alone improved anaerobic fermentation by decreasing pH and ammonia nitrogen content (P < 0.05) and increased lactic acid content (P < 0.05) when compared to the control, and GM showed the same additive effect as LAB inoculants. Microbial additives formed a co-occurrence microbial network system dominated by LAB, enhanced the biosynthesis of secondary metabolites, diversified the microbial metabolic environment and carbohydrate metabolic pathways, weakened the amino acid metabolic pathways, and made the anaerobic fermentation cleaner. This study is of great significance for the effective utilization of crop straw resources, the promotion of sustainable livestock production, and the reduction of GHG emissions.IMPORTANCETo effectively utilize crop by-product resources, we applied microbial additives to silage fermentation of fresh rice straw. Fresh rice straw is extremely rich in microbial diversity, which was significantly reduced after silage fermentation, and its nutrients were well preserved. Silage fermentation was improved by microbial additives, where the combination of cellulase and lactic acid bacteria acted as enzyme-bacteria synergists to promote lactic acid fermentation and inhibit the proliferation of harmful bacteria, such as protein degradation and gas production, thereby reducing GHG emissions and DM losses. The microbial additives accelerated the formation of a symbiotic microbial network system dominated by lactic acid bacteria, which regulated silage fermentation and improved microbial metabolic pathways for carbohydrates and amino acids, as well as biosynthesis of secondary metabolites.
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Affiliation(s)
- Zhumei Du
- College of Animal Science and Technology, Yangzhou University, Yangzhou, China
| | - Andressa Nakagawa
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | - Jiachen Fang
- Faculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Japan
| | - Roni Ridwan
- Research Center for Applied Zoology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Wulansih D Astuti
- Research Center for Applied Zoology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Ki A Sarwono
- Research Center for Applied Zoology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Ahmad Sofyan
- Research Center for Animal Husbandry, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Yantyati Widyastuti
- Research Center for Applied Zoology, National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Yimin Cai
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
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Du Z, Yamasaki S, Oya T, Nguluve D, Euridse D, Tinga B, Macome F, Cai Y. Microbial network and fermentation modulation of Napier grass and sugarcane top silage in southern Africa. Microbiol Spectr 2024; 12:e0303223. [PMID: 38084975 PMCID: PMC10783067 DOI: 10.1128/spectrum.03032-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 11/05/2023] [Indexed: 01/13/2024] Open
Abstract
IMPORTANCE Feed shortage in the tropics is a major constraint to the production of livestock products such as milk and meat. In order to effectively utilize of local feed resources, the selected lactic acid bacteria (LAB) strain was used to prepare Napier grass and sugarcane top silage. The results showed that the two silages inoculated with LAB formed a co-occurrence microbial network dominated by Lactiplantibacillus during the fermentation process, regulated the microbial community structure and metabolic pathways, and improved the silage fermentation quality. This is of great significance for alleviating feed shortage and promoting sustainable production of livestock.
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Affiliation(s)
- Zhumei Du
- College of Animal Science and Technology, Yangzhou University, Yangzhou, China
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | - Seishi Yamasaki
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | - Tetsuji Oya
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
| | - Damiao Nguluve
- Agricultural Research Institute of Mozambique, Matola, Mozambique
| | - Denise Euridse
- Agricultural Research Institute of Mozambique, Matola, Mozambique
| | - Benedito Tinga
- Agricultural Research Institute of Mozambique, Matola, Mozambique
| | | | - Yimin Cai
- Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki, Japan
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Kolkman JM, Moreta DE, Repka A, Bradbury P, Nelson RJ. Brown midrib mutant and genome-wide association analysis uncover lignin genes for disease resistance in maize. THE PLANT GENOME 2023; 16:e20278. [PMID: 36533711 DOI: 10.1002/tpg2.20278] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 09/19/2022] [Indexed: 05/10/2023]
Abstract
Brown midrib (BMR) maize (Zea mays L.) harbors mutations that result in lower lignin levels and higher feed digestibility, making it a desirable silage market class for ruminant nutrition. Northern leaf blight (NLB) epidemics in upstate New York highlighted the disease susceptibility of commercially grown BMR maize hybrids. We found the bm1, bm2, bm3, and bm4 mutants in a W64A genetic background to be more susceptible to foliar fungal (NLB, gray leaf spot [GLS], and anthracnose leaf blight [ALB]) and bacterial (Stewart's wilt) diseases. The bm1, bm2, and bm3 mutants showed enhanced susceptibility to anthracnose stalk rot (ASR), and the bm1 and bm3 mutants were more susceptible to Gibberella ear rot (GER). Colocalization of quantitative trait loci (QTL) and correlations between stalk strength and disease traits in recombinant inbred line families suggest possible pleiotropies. The role of lignin in plant defense was explored using high-resolution, genome-wide association analysis for resistance to NLB in the Goodman diversity panel. Association analysis identified 100 single and clustered single-nucleotide polymorphism (SNP) associations for resistance to NLB but did not implicate natural functional variation at bm1-bm5. Strong associations implicated a suite of diverse candidate genes including lignin-related genes such as a β-glucosidase gene cluster, hct11, knox1, knox2, zim36, lbd35, CASP-like protein 8, and xat3. The candidate genes are targets for breeding quantitative resistance to NLB in maize for use in silage and nonsilage purposes.
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Affiliation(s)
- Judith M Kolkman
- School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell Univ., Ithaca, NY, 14853, USA
| | - Danilo E Moreta
- School of Integrative Plant Science, Plant Breeding and Genetics Section, Cornell Univ., Ithaca, NY, 14853, USA
| | - Ace Repka
- School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell Univ., Ithaca, NY, 14853, USA
| | | | - Rebecca J Nelson
- School of Integrative Plant Science, Plant Pathology and Plant-Microbe Biology Section, Cornell Univ., Ithaca, NY, 14853, USA
- School of Integrative Plant Science, Plant Breeding and Genetics Section, Cornell Univ., Ithaca, NY, 14853, USA
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Du Z, Sun L, Lin Y, Chen C, Yang F, Cai Y. Use of Napier grass and rice straw hay as exogenous additive improves microbial community and fermentation quality of paper mulberry silage. Anim Feed Sci Technol 2022. [DOI: 10.1016/j.anifeedsci.2022.115219] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Reed H, Mueller B, Groves CL, Smith DL. Presence and Correlation of Fusarium graminearum and Deoxynivalenol Accumulation in Silage Corn Plant Parts. PLANT DISEASE 2022; 106:87-92. [PMID: 34491093 DOI: 10.1094/pdis-03-21-0641-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Corn silage, made from Zea mays, is a high-energy feed that is important for feeding dairy cows. Plant diseases, such as those caused by Fusarium graminearum, can decrease silage corn yields and quality. F. graminearum (teleomorph Gibberella zeae) is an ascomycete fungus that causes Gibberella ear and stalk rot in corn. F. graminearum produces deoxynivalenol (DON), a secondary metabolite toxic to humans and animals. An understanding of the distribution of DON and F. graminearum throughout the corn plant is important for determining the quality of corn silage. A partitioned sample experiment that included two brown midrib silage hybrids and three fungicide treatments was conducted in research plots located in Arlington, WI, U.S.A., in 2018 and 2019. At harvest, stalk and ear parts were physically separated, dried, and ground for analysis. DON concentration (in parts per million) was determined using an enzyme-linked immunosorbent assay, and F. graminearum DNA concentration (in picograms per nanogram) was determined using quantitative PCR. DON and F. graminearum DNA were detected in all samples, demonstrating accumulation of the fungus in stalks and ears of the plant. In 2018, DON contamination was as high as 30 ppm and varied drastically between stalks and ears. In 2019, DON concentrations were much lower (<5 ppm), but were consistently higher in stalk samples than ear samples. Across all samples, DON concentrations and F. graminearum accumulation were highly correlated within the separated stalk (r = 0.78) and ear portions (r = 0.87) but were not correlated between ears and stalks. Depending on the weather and planting conditions in a given year, stalk infections or ear infections may occur by F. graminearum, leading to subsequent DON increases in those respective parts that are independent of each other.
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Affiliation(s)
- Hannah Reed
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI 53706
| | - Brian Mueller
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI 53706
| | - Carol L Groves
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI 53706
| | - Damon L Smith
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI 53706
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Exploring microbial community structure and metabolic gene clusters during silage fermentation of paper mulberry, a high-protein woody plant. Anim Feed Sci Technol 2021. [DOI: 10.1016/j.anifeedsci.2020.114766] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Cai Y, Du Z, Yamasaki S, Jethro DB, Man N. Chemical composition, characteristics concerned with fermentative quality and microbial population of ensiled pearl millet and sorghum stover in semi-arid West Africa. Anim Sci J 2020; 91:e13463. [PMID: 33222395 PMCID: PMC7757160 DOI: 10.1111/asj.13463] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 09/07/2020] [Accepted: 09/10/2020] [Indexed: 11/30/2022]
Abstract
To effectively utilize crop by-product resources for ruminant feed in semi-arid West Africa, we studied the chemical composition, characteristics concerned with fermentative quality, and microbial population of ensiled pearl millet stover (PMS) and sorghum stover (SS) in Mozambique. After panicle harvest, the PMS and SS were exposed in the field for 7, 21, 35, 49, 63, 77, 91, and 120 days under natural weather conditions. The fresh stover silages were prepared and stored for 120 days. With increased exposure time, the dry matter, neutral detergent fiber, acid detergent lignin, and neutral detergent insoluble nitrogen contents increased, whereas the crude protein, ether extract, gross energy, digestible energy, metabolizable energy, and true protein contents decreased. After 120 days of field exposure, aerobic bacteria dominated both stovers, and lactic acid bacteria (LAB) decreased to below detectable levels. After 120 days of ensiling, LAB dominated the silage of both crops, while the harmful microorganisms as aerobic bacteria, coliform bacteria, yeast, and mold were reduced or below detectable levels. Both silages did not produce more lactic acid to reduce the pH value, but they preserved nutrients well during ensiling. Therefore, PMS and SS can be prepared as silage for ruminant feed in semi-arid West Africa.
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Affiliation(s)
- Yimin Cai
- Japan International Research Center for Agricultural Sciences (JIRCAS)TsukubaJapan
| | - Zhumei Du
- Japan International Research Center for Agricultural Sciences (JIRCAS)TsukubaJapan
- College of Grassland Science and TechnologyChina Agricultural UniversityBeijingPR China
| | - Seishi Yamasaki
- Japan International Research Center for Agricultural Sciences (JIRCAS)TsukubaJapan
| | - Delma B. Jethro
- Institute of Environment and Agriculture Research (INERA)KoudougouBurkina Faso
| | - Nignan Man
- Institute of Environment and Agriculture Research (INERA)KoudougouBurkina Faso
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