A review of factors that impact on the capacity of beef cattle females to conceive, maintain a pregnancy and wean a calf-Implications for reproductive efficiency in northern Australia

Genomic insights into key genes and QTLs involved in cattle reproduction

From an economic standpoint, reproductive characteristics are fundamental for sustainable production, particularly for monotocous livestock like cattle. A longer inter-calving interval is indicative of low reproductive capacity. This issue changes the dynamics of current and future lactations since it necessitates more inseminations, veterinary care, and hormone interventions. Various reproductive phenotypes, including ovulation, mating, fertility, pregnancy, embryonic growth, and calving-related traits, are observed in dairy cattle, and these traits have been associated with several QTLs. Calving ease, age at puberty, scrotal circumference, and inseminations per conception have been associated with 4437, 10623, 10498, and 2476 Quantitative Trait Loci (QTLs), respectively. This data offers valuable insights into enhancing and comprehending reproductive traits in livestock breeding. Studying QTLs associated with reproductive traits has far-reaching implications across various fields, from agriculture and animal husbandry to human health, evolutionary biology, and conservation. It provides the foundation for informed breeding practices, advances in biotechnology, and a deeper understanding of the genetic underpinnings of reproduction.

Oxidative stress associated with proteomic and fatty acid profiles of sperm from Nellore bulls at rest†

Sexual rest is a transient condition, which compromises conception rates, characterized by large volumes of ejaculate with high percentages of dead sperm observed in bulls. The biochemical mechanisms leading to this ejaculate pattern are not fully understood. Six adult resting Nellore bulls were submitted to Breeding Soundness Evaluation by four consecutive semen collections through the electroejaculation method during a 30 min period. Each ejaculate had its semen phenotypic parameters; morphology and physical aspects were evaluated. To assess enzymatic activity (superoxide dismutase, catalase, and glutathione S-transferase), lipid peroxidation (concentrations of malondialdehyde and nitric oxide), fatty acid, and proteomic profile aliquots of spermatozoa from the first and fourth ejaculates were used. All sperm parameters differed between the first and fourth ejaculates. Spermatozoa from the first ejaculate showed lower enzymatic activity and a higher concentration of lipid peroxidation markers. Among the 19 identified fatty acids, 52.7% are polyunsaturated. Relative abundance analysis showed that C12:0 and C18:0 fatty acids differed between the first and fourth ejaculates, being the fourth ejaculate richer in spermatozoa. The proteomics analysis identified a total of 974 proteins in both sample groups (first and fourth ejaculates). The majority of identified proteins are related to cellular processes and signaling. Quantitative proteomics showed 36 differentially abundant proteins, 6 up-regulated proteins in the first ejaculate, and 30 up-regulated proteins in the fourth ejaculate. Spermatozoa from bulls at sexual rest have less antioxidant capacity, causing changes in their fatty acid composition and protein profile, which generates the observed sperm pattern and lower fertilization capacity.

A systematic review on leptospirosis in cattle: A European perspective

Leptospirosis is a zoonotic disease which is globally distributed and represents a classic One Health issue that demands a comprehensive understanding of the hosts, transmission paths, and risk factors of transmission. Bovine leptospirosis often results in economic losses through its severe impact on reproduction performance while it threatens human health at human-cattle-environment interfaces. However, a clear analysis of the disease characteristics in European cattle is currently lacking. The objective of this review was to summarise the current knowledge on the epidemiology of bovine leptospirosis in Europe. We conducted a systematic literature review, screening four electronic databases, and filtered articles published between 2001 and 2021, in English, German, and French. Sixty-two articles were ultimately included in the review. The seroprevalence of leptospirosis in cattle was remarkably variable among studies, probably reflecting local variations but also heterogeneity in the study designs, laboratory methods, and sample sizes. Risk factors positively associated with the disease were diverse, related to local, environmental, and climatic parameters as well as farming practices. The most reported circulating Leptospira serogroups in European cattle were Sejroe (58.5%), Australis (41.5%), Grippotyphosa (41.5%), Icterohaemorrhagiae (37.7%), and Pomona (26.4%), which have also been associated with human infections worldwide. Abortion (58.6%) and fertility disorders (24.1%) were the most frequently reported signs of leptospirosis in European cattle and were generally associated with chronic infections. This work highlights several research gaps, including a lack of harmonisation in diagnostic methods, a lack of large-scale studies, and a lack of molecular investigations. Given that predictions regarding the climatic suitability for leptospirosis in Europe suggest an increase of leptospirosis risk it is important to raise awareness among stakeholders and motivate an integrated One Health approach to the prevention and control of this zoonotic disease in cattle and humans.

Discovering Genomic Regions Associated with Reproductive Traits and Frame Score in Mexican Simmental and Simbrah Cattle Using Individual SNP and Haplotype Markers

Reproductive efficiency stands as a critical determinant of profitability within beef production systems. The incorporation of molecular markers can expedite advancements in reproductive performance. While the use of SNPs in association analysis is prevalent, approaches centered on haplotypes can offer a more comprehensive insight. The study used registered Simmental and Simbrah cattle genotyped with the GGP Bovine 150 k panel. Phenotypes included scrotal circumference (SC), heifer fertility (HF), stayability (STAY), and frame score (FS). After quality control, 105,129 autosomal SNPs from 967 animals were used. Haplotype blocks were defined based on linkage disequilibrium. Comparison between haplotypes and SNPs for reproductive traits and FS was conducted using Bayesian and frequentist models. 23, 13, 7, and 2 SNPs exhibited associations with FS, SC, HF, and STAY, respectively. In addition, seven, eight, seven, and one haplotypes displayed associations with FS, SC, HF, and STAY, respectively. Within these delineated genomic segments, potential candidate genes were associated.

Understanding the underlying genetic mechanisms for age at first calving, inter-calving period and scrotal circumference in Bonsmara cattle

BACKGROUND

Reproduction is a key feature of the sustainability of a species and thus represents an important component in livestock genetic improvement programs. Most reproductive traits are lowly heritable. In order to gain a better understanding of the underlying genetic basis of these traits, a genome-wide association was conducted for age at first calving (AFC), first inter-calving period (ICP) and scrotal circumference (SC) within the South African Bonsmara breed. Phenotypes and genotypes (120,692 single nucleotide polymorphisms (SNPs) post editing) were available on 7,128 South African Bonsmara cattle; the association analyses were undertaken using linear mixed models.

RESULTS

Genomic restricted maximum likelihood analysis of the 7,128 SA Bonsmara cattle yielded genomic heritability's of 0.183 (SE = 0.021) for AFC, 0.207 (SE = 0.022) for ICP and 0.209 (SE = 0.019) for SC. A total of 16, 23 and 51 suggestive (P ≤ 4 × 10-6) SNPs were associated with AFC, ICP and SC, while 11, 11 and 44 significant (P ≤ 4 × 10-7) SNPs were associated with AFC, ICP and SC respectively. A total of 11 quantitative trait loci (QTL) and 11 candidate genes were co-located with these associated SNPs for AFC, with 10 QTL harbouring 11 candidate genes for ICP and 41 QTL containing 40 candidate genes for SC. The QTL identified were close to genes previously associated with carcass, fertility, growth and milk-related traits. The biological pathways influenced by these genes include carbohydrate catabolic processes, cellular development, iron homeostasis, lipid metabolism and storage, immune response, ovarian follicle development and the regulation of DNA transcription and RNA translation.

CONCLUSIONS

This was the first attempt to study the underlying polymorphisms associated with reproduction in South African beef cattle. Genes previously reported in cattle breeds for numerous traits bar AFC, ICP or SC were detected in this study. Over 20 different genes have not been previously reported in beef cattle populations and may have been associated due to the unique genetic composite background of the SA Bonsmara breed.

Predicting Carcass Weight of Grass-Fed Beef Cattle before Slaughter Using Statistical Modelling

Gaining insights into the utilization of farm-level data for decision-making within the beef industry is vital for improving production and profitability. In this study, we present a statistical model to predict the carcass weight (CW) of grass-fed beef cattle at different stages before slaughter using historical cattle data. Models were developed using two approaches: boosted regression trees and multiple linear regression. A sample of 2995 grass-fed beef cattle from 3 major properties in Northern Australia was used in the modeling. Four timespans prior to the slaughter, i.e., 1 month, 3 months, 9-10 months, and at weaning, were considered in the predictive modelling. Seven predictors, i.e., weaning weight, weight gain since weaning to each stage before slaughter, time since weaning to each stage before slaughter, breed, sex, weaning season (wet and dry), and property, were used as the potential predictors of the CW. To assess the predictive performance in each scenario, a test set which was not used to train the models was utilized. The results showed that the CW of the cattle was strongly associated with the animal's body weight at each stage before slaughter. The results showed that the CW can be predicted with a mean absolute percentage error (MAPE) of 4% (~12-16 kg) at three months before slaughter. The predictive error increased gradually when moving away from the slaughter date, e.g., the prediction error at weaning was ~8% (~20-25 kg). The overall predictive performances of the two statistical approaches was approximately similar, and neither of the models substantially outperformed each other. Predicting the CW in advance of slaughter may allow farmers to adequately prepare for forthcoming needs at the farm level, such as changing husbandry practices, control inventory, and estimate price return, thus allowing them to maximize the profitability of the industry.

Maternal Behavior in Beef Cattle: The Physiology, Assessment and Future Directions-A Review

Bovine maternal behavior is known to be influenced by a variety of factors including hormonal mediation, breed, age, parity, host genetics and general management practices. Following centuries of varying levels of domestication processes, the behavior of the bovine cow has altered from that of her original wild ungulate ancestors, although many maternal instincts have remained unchanged. The influence of maternal behavior on calf health and performance is of interest to cow-calf beef production operations, as in most instances, the cow is solely responsible for rearing the calf until weaning. However, investigating the magnitude of this influence is challenging, in part because objective measurement of behavioral traits is difficult, particularly in extensive settings. In recent years, while a number of remote monitoring devices have been developed that afford opportunities for objective measurement of behavioral traits in livestock, characterization of physiological mechanisms that underlie superior maternal behavior, including identification of potential biomarkers remains elusive in cattle. Hormonal profiles during the periparturient period have been shown to influence behavioral patterns in both current and future generations in other mammalian species and may provide insights into the physiology of bovine maternal behavior. Therefore, the aim of this review is to describe general characteristics of bovine maternal behavior and the factors known to influence it, including hormonal drivers, through which cross-reference to other species is made. Current methods of measuring and assessing behavior that may also be applicable to most production settings have also been reviewed. At present, there is no known hormonal assay that can be used to measure and/or reliably predict bovine maternal behavior post-calving or across generations. Being able to objectively assess superior maternal behavior, whether that be through remote monitoring, hormonal profiling or indirectly through measuring calf performance will be beneficial to livestock industries in the future.

Assessing Reproductive Performance to Establish Benchmarks for Small-Holder Beef Cattle Herds in South Africa

Smallholder beef cattle farms in South Africa have had low reproductive performance, which has been associated with management practices. Considering current farm management practices, a multi-stage selection study was conducted to assess reproductive performance as defined by pregnancy rate, fetal and calf losses, calving interval and days open to benchmark reproductive performance. Data were collected twice, in autumn (March−May) for pregnancy diagnosis and in spring (September−November) for monitoring of confirmed pregnancies. Overall, 3694 cow records from 40 smallholder herds were collected during 2018 and 2019 breeding seasons from five provinces. The preferred 25th quartile described target performance and GLIMMIX procedure determined associations between management practices and performance. Smallholder farms on average recorded 50% pregnancy rate and 12% fetal and calf losses with 304 and 608 days open and calving interval, respectively. The derived target benchmarks for pregnancy rate, fetal and calf losses, days open and calving intervals in smallholder farms were 54%, 1.4%, 152 and 425 days, respectively. Reproductive performance was associated with no knowledge of body condition scoring before breeding, culling of old and non-productive cows, record keeping and low bull to cow ratio (p < 0.05). The performance benchmarks implied that industry averages may be improved if sustainable management services are provided through extension and advisory services.

Correlation scan: identifying genomic regions that affect genetic correlations applied to fertility traits

Although the genetic correlations between complex traits have been estimated for more than a century, only recently we have started to map and understand the precise localization of the genomic region(s) that underpin these correlations. Reproductive traits are often genetically correlated. Yet, we don't fully understand the complexities, synergism, or trade-offs between male and female fertility. In this study, we used reproductive traits in two cattle populations (Brahman; BB, Tropical Composite; TC) to develop a novel framework termed correlation scan (CS). This framework was used to identify local regions associated with the genetic correlations between male and female fertility traits. Animals were genotyped with bovine high-density single nucleotide polymorphisms (SNPs) chip assay. The data used consisted of ~1000 individual records measured through frequent ovarian scanning for age at first corpus luteum (AGECL) and a laboratory assay for serum levels of insulin growth hormone (IGF1 measured in bulls, IGF1b, or cows, IGF1c). The methodology developed herein used correlations of 500-SNP effects in a 100-SNPs sliding window in each chromosome to identify local genomic regions that either drive or antagonize the genetic correlations between traits. We used Fisher's Z-statistics through a permutation method to confirm which regions of the genome harboured significant correlations. About 30% of the total genomic regions were identified as driving and antagonizing genetic correlations between male and female fertility traits in the two populations. These regions confirmed the polygenic nature of the traits being studied and pointed to genes of interest. For BB, the most important chromosome in terms of local regions is often located on bovine chromosome (BTA) 14. However, the important regions are spread across few different BTA's in TC. Quantitative trait loci (QTLs) and functional enrichment analysis revealed many significant windows co-localized with known QTLs related to milk production and fertility traits, especially puberty. In general, the enriched reproductive QTLs driving the genetic correlations between male and female fertility are the same for both cattle populations, while the antagonizing regions were population specific. Moreover, most of the antagonizing regions were mapped to chromosome X. These results suggest regions of chromosome X for further investigation into the trade-offs between male and female fertility. We compared the CS with two other recently proposed methods that map local genomic correlations. Some genomic regions were significant across methods. Yet, many significant regions identified with the CS were overlooked by other methods.

Environmental variation effects fertility in tropical beef cattle

The northern Australia beef cattle industry operates in harsh environmental conditions which consistently suppress female fertility. To better understand the environmental effect on cattle raised extensively in northern Australia, new environmental descriptors were defined for 54 commercial herds located across the region. Three fertility traits, based on the presence of a corpus luteum at 600 d of age, indicating puberty, (CL Presence, n = 25,176), heifer pregnancy (n = 20,989) and first lactation pregnancy (n = 10,072) were recorded. Temperature, humidity, and rainfall were obtained from publicly available data based on herd location. Being pubertal at 600 d (i.e. CL Presence) increased the likelihood of success at heifer pregnancy and first lactation pregnancy (P < 0.05), underscoring the importance of early puberty in reproductive success. A temperature humidity index (THI) of 65–70 had a significant (P < 0.05) negative effect on first lactation pregnancy rate, heifer pregnancy and puberty at 600 d of age. Area under the curve of daily THI was significant (P < 0.05) and reduced the likelihood of pregnancy at first lactation and puberty at 600 days. Deviation from long-term average rainfall was not significant (P < 0.05) for any trait. Average daily weight gain had a significant and positive relationship (P < 0.05) for heifer and first lactation pregnancy. The results indicate that chronic or cumulative heat load is more determinantal to reproductive performance than acute heat stress. The reason for the lack of a clear relationship between acute heat stress and reproductive performance is unclear but may be partially explained by peak THI and peak nutrition coinciding at the same time. Sufficient evidence was found to justify the use of average daily weight gain and chronic heat load as descriptors to define an environmental gradient.

Effect of temporary weaning and creep feeding on calf growth and the reproductive efficiency of their Hereford dams

Objective

The objective was to test if creep feeding (CF) improves the average daily gain (ADG) and weaning weight of calves submitted to temporary weaning (TW) and if the combination of CF and TW improves conception and pregnancy rates of cows.

Methods

Primiparous (n = 74) and primiparous and multiparous (n = 104) cows grazing native grasslands were used in experiment 1 and 2; respectively. The experimental design was in plots divided into complete random blocks with two replications. The CF was the big plot and TW the small plot, thus four experimental groups were formed: i) −CF−TW (n = 21 and 27); ii) −CF+TW (n = 16 and 24); iii) +CF−TW (n = 20 and 26); iv) +CF+TW (n = 17 and 27) with cow-calf pairs for experiments 1 and 2; respectively. Nose plate application for TW had a duration of 14 and 15 days for experiment 1 and 2: respectively. In experiment 1, calves were fed at 1% of live weight for 112 days using a commercial supplement with 18.4% crude protein. In experiment 2, the supplementation lasted 98 days, and was carried out with corn dried distillers grains with soluble (DDGS) at 40% of the potential intake on a daily basis.

Results

The TW reduced ADG during the TW period and the following 14 days, but the negative effect of TW was maintained until the final weaning only in experiment 2. The CF increased ADG during TW period in both experiments. The TW promoted an earlier conception of the dams (12 days in −CF treatment and 19 days in +CF treatment, p<0.01) and CF increased pregnancy rate in experiment 1, being the effects not consistent between experiments.

Conclusion

The CF consistently promoted an increase in ADG during the period of TW and increased final weaning weight of calves, therefore it is economically viable.

Growth and reproductive performance responses to post-weaning supplementation of early and normally-weaned Brahman crossbred heifers raised in tropical rangelands

This study investigated the effect of five post-weaning supplementation strategies and two weaning weight groups on long-term growth, puberty and pregnancy percentage of Brahman crossbred heifers. Early-weaned (118 ± 6 kg liveweight) and normally-weaned (183 ± 6 kg liveweight) heifers were allocated to group pens (n = 4 and n = 5/pen for early- and normally-weaned respectively) and offered one of five levels of post-weaning protein supplementation: 0, 1, 2.5, 5 and 10 g of supplement/kg liveweight.day with ad libitum access to a low quality sabi grass (Urochloa mosambicensis) hay during the first dry season (169 days) after weaning. After the post-weaning supplementation period, all heifers grazed the same pastures as a single mob until the end of the experiment and were exposed to fertile bulls from January to May 2016. During the first dry season, supplement intake had a positive linear effect on liveweight gain and hip width gain with no difference in the response between weaning groups. Overall, heifers with higher supplement intakes (i.e. 5 and 10 g/kg) had higher hip height gain (P < 0.005), hip width gain (P < 0.001), body condition score (P < 0.001), and concentration of insulin-like growth factor-1 (P = 0.001), triiodothyronine (P = 0.04) and insulin (P = 0.05) in plasma compared to unsupplemented heifers. These changes resulted in thicker proliferative and hypertrophic zones (both P = 0.03) of the tuber coxae growth plate, larger diameter of terminal hypertrophic chondrocytes (both P = 0.004) at the end of the post-weaning supplementation period when comparing the highest level of supplementation with unsupplemented group. Unsupplemented heifers from both weaning weight groups demonstrated compensatory liveweight gain over the first wet season while evidence of catch-up growth in skeletal dimensions was observed in the second wet season. The main determining factor for pregnancy status of two-year-old Brahman crossbred heifers was pre-mating liveweight (P < 0.001), the pre-mating liveweight was in turn affected by post-weaning supplementation (P = 0.02) or weaning weight group (P < 0.001). This study further demonstrated the positive relationship between premating weight and the occurrence of pregnancy, with an approximate 300 kg pre-mating liveweight required to achieve approximately 80% (67.1–90.3% for a 95% confidence interval) probability of pregnancy in two-year-old Brahman crossbred heifers mated for 4 months.

Sexual behavior and seminal characteristics of Brahman bulls in the Colombian tropical flooded savanna: effects of reproductive management systems and climatic periods

The objective of this study was to evaluate the seminal traits and sexual behaviors of mature Brahman bulls in a multi-sire system during mating or resting seasons and different climatic periods of the year at the Colombian flooded savannas. Thirty-two Brahman bulls, suitable for reproduction, were used, which were subjected to breeding soundness evaluation, as well as the libido and service capacity tests. Such evaluations were compared among different seasons of the year in relation to the rainfall. Libido and service capacity tests were carried out in paddock for 12 continuous hours. Scrotal circumference and all seminal traits were not influenced by the mating or rest seasons, neither by the different climatic periods. However, libido and service capacity were significantly affected by the climatic periods, decreasing their expression during the intense rainfall season, and increasing during the transition period from summer to the onset of rains, which could be considered the appropriate time to establish mating seasons in this region. Furthermore, a high positive correlation was observed between libido and service capacity confirmed by a logistic model that animals with low libido have low probability of having high service capacity. In conclusion, although Brahman bulls are physiologically adapted to tropical regions, their expression of sexual behavior is markedly influenced by the weather. Hence, the use of libido test may serve as a good predictor of the service capacity, and a useful tool to improve the selection of sires.

Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

Background

Africa is an important watershed in the genetic history of domestic cattle, as two lineages of modern cattle, Bos taurus and B. indicus, form distinct admixed cattle populations. Despite the predominant B. indicus nuclear ancestry of African admixed cattle, B. indicus mitochondria have not been found on the continent. This discrepancy between the mitochondrial and nuclear genomes has been previously hypothesized to be driven by male-biased introgression of Asian B. indicus into ancestral African B. taurus. Given that this hypothesis mandates extreme demographic assumptions relying on random genetic drift, we propose a novel hypothesis of selection induced by mitonuclear incompatibility and assess these hypotheses with regard to the current genomic status of African admixed cattle.

Results

By analyzing 494 mitochondrial and 235 nuclear genome sequences, we first confirmed the genotype discrepancy between mitochondrial and nuclear genome in African admixed cattle: the absence of B. indicus mitochondria and the predominant B. indicus autosomal ancestry. We applied approximate Bayesian computation (ABC) to assess the posterior probabilities of two selection hypotheses given this observation. The results of ABC indicated that the model assuming both male-biased B. indicus introgression and selection induced by mitonuclear incompatibility explains the current genomic discrepancy most accurately. Subsequently, we identified selection signatures at autosomal loci interacting with mitochondria that are responsible for integrity of the cellular respiration system. By contrast with B. indicus-enriched genome ancestry of African admixed cattle, local ancestries at these selection signatures were enriched with B. taurus alleles, concurring with the key expectation of selection induced by mitonuclear incompatibility.

Conclusions

Our findings support the current genome status of African admixed cattle as a potential outcome of male-biased B. indicus introgression, where mitonuclear incompatibility exerted selection pressure against B. indicus mitochondria. This study provides a novel perspective on African cattle demography and supports the role of mitonuclear incompatibility in the hybridization of mammalian species.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12915-021-01206-x.

The Effect of Maternal Behavior around Calving on Reproduction and Wellbeing of Zebu Type Cows and Calves

The behaviors associated with domestic cattle such as maternal care are quite similar to those behaviors observed in wild ungulates. These behaviors allow the cow to bond with her calf, protect and provide it with nourishment and ultimately reduce the bond at weaning. Although maternal behavior is an important factor influencing the survival and early development of the newborn calf, Zebu type cows around calving have not been studied extensively. Herein, we consider the four main aspects of maternal behavior in cattle and particularly Bos indicus cows and calves. Firstly, we provide a brief description of the behavior of cows around parturition and the behavior of the first stages of the calves' lives. In the second part, the protective behavior of the mother is analyzed. Subsequently, examples of animal welfare implications followed by an analysis of some factors that affect calf survival, including mother experience and weather conditions, are discussed, and in the last part, reproduction along with some peculiarities of reproductive behavior, and the wellbeing of mother and calves are examined. We concluded that knowledge of maternal behavior of Zebu type cows around calving and interactions with calves might contribute to an enhanced reproductive efficiency of the mother and the welfare of the calf.

The Relationship between Satellite-Derived Vegetation Indices and Live Weight Changes of Beef Cattle in Extensive Grazing Conditions

The live weight (LW) and live weight change (LWC) of cattle in extensive beef production is associated with pasture availability and quality. The remote monitoring of pastures and cattle LWC can be achieved with a combination of satellite imagery and walk-over-weighing (WoW) stations. The objective of the present study is to determine the association, if any, between vegetation indices (VIs) (pasture availability) and the LWC of beef cattle in an extensive breeding operation in Northern Australia. The study also tests a suite of VIs along with variables such as rainfall and Julian day to predict the LWC of breeding cows. The VIs were calculated from Sentinel-2 satellite imagery over a 2-year period from a paddock with 378 cattle. Animal LW was measured remotely using a weighing scale at the water point. The relationship between VIs, the LWC, and LW was assessed using linear mixed-effects regression models and random forest modelling. Findings demonstrate that all VIs calculated had a significant positive relationship with the LWC and LW (p < 0.001). Machine learning predictive modelling showed that the LWC of breeding cows could be predicted from VIs, Julian day, and rainfall information, with a Lin’s Concordance Correlation Coefficient of 0.62 when using the leave-one-month-out cross-validation. The LW and LWC were greater during the wet season when VIs were higher compared to the dry season (p < 0.001). Results suggest that the remote monitoring of pasture availability, the LWC and LW is possible under extensive grazing conditions. Further, the use of VIs and other readily available data such as rainfall can be used to predict the LWC of a breeding herd in extensive conditions. Such information could be used to increase the productivity and land management in extensive beef production. The integration of these data streams offers great potential to improve the monitoring, management, and productivity of grazing or cropping enterprises.

Periconception and First Trimester Diet Modifies Appetite, Hypothalamic Gene Expression, and Carcass Traits in Bulls

Nulliparous yearling beef heifers (n=360) were used to evaluate the effects of maternal dietary protein during the periconception and first trimester periods of gestation on postnatal growth, feedlot performance, carcass characteristics, and the expression of genes associated with appetite in the arcuate nucleus of their male progeny. Heifers were individually fed a diet of 1.18g crude protein (CP)/day High protein (HPeri) or 0.62g CP/day Low protein (LPeri) beginning 60days before conception. From 24 to 98days post-conception (dpc), half of each treatment group changed to the alternative post-conception diet and were fed 1.49g CP/day (HPost) or 0.88g CP/day (LPost) yielding four treatment groups in a 2×2 factorial design. From day 98 of gestation, heifers received a common diet until parturition. Calves were weaned at 183days and developed on pasture before feedlot entry. Bulls underwent a 70-day Residual Feed Intake (RFI) feedlot test commencing at 528days of age. Feedlot entry and final body weight (BW), feedlot average daily gain (ADG) and RFI were not different (p>0.05). Progeny of dams that had a change in diet (LPeri/HPost and HPeri/LPost) had 9% higher daily dry matter intake (DMI) during the RFI test (p<0.05) than progeny of dams that received low diet throughout both the peri-conception period and first trimester (LPeri/LPost). Further, mRNA expression of the appetite-stimulating agouti-related protein (AGRP) was increased in the arcuate nucleus of High Peri/LPost bulls (p<0.05). Longissimus dorsi muscle cross sectional area, carcass dressing percentage, and estimated retail beef yield (RBY) were all higher (p<0.05), and rump (P8) fat tended to be lower (p=0.07), for bulls from HPost dams despite no difference in carcass weight (p<0.05). This study is of commercial importance to the livestock industry as specific periods of maternal dietary supplementation may increase feed intake, enhance progeny muscling, and alter fat deposition leading to improvement in efficiency of meat production in beef cattle.

Pregnancy rate per cycle is heritable and reduces with cycle in naturally mated tropically adapted beef cows

Pregnancy in cattle is the outcome of the complex process of initiation of cycling, fertilization, maternal recognition of pregnancy and foeto-placental development. Though much is known about initiation of cycling and associated risk factors, there are virtually no data on pregnancy rate per cycle for naturally mated cattle, especially for extensively managed, tropically adapted genotypes, which this study aimed to determine. Tropical composite (Bos indicus and African Sanga crosses with Bos taurus) and Brahman cattle (n = 2,181) of known pedigree in four-year groups at four sites were mated annually for 84 days. Body condition, ovarian function, pregnancies, calving and lactation were monitored through six full reproductive cycles using 4-8 weekly ultrasound of the reproductive tract outside the calving period and daily monitoring during calving. From this, dates of commencement of cycling and conception in each year were estimated for each animal, enabling calculation of established pregnancy for consecutive 21-day periods while cycling and of pregnancies within four months of calving while lactating (P4M). Pregnancy per 21-day period (cycle) during mating for cycling animals averaged 63%, 71%, 41% and 28% in four consecutive cycles. Pregnant per cycle was 2%-11% higher in tropical composites than in Brahmans. The only other consistently significant risk to becoming pregnant was if cycling commenced later than three weeks before mating commenced. P4M averaged 62% and was lower for cows in sub-optimal body condition and in first-parity and later-calving cows. Pregnant per cycle was moderately heritable (~20%), while heritability was moderate to high (33%) for P4M. Selection for pregnant per cycle could be achieved indirectly by selection for P4M, a trait that is readily measured.

Calf Birth Weight Predicted Remotely Using Automated in-Paddock Weighing Technology

The present study aimed to develop predictive models of calf birth weight (CBW) from liveweight (LW) data collected remotely and individually using an automated in-paddock walk-over-weighing scale (WOW). Twenty-eight multiparous Charolais cows were mated with two Brahman bulls. The WOW was installed at the only watering point to capture LW over five months. Calf birth date and weight were manually recorded, and the liveweight change experienced by a dam at calving (ΔLWC) was calculated as pre-LW minus post-LW calving. Cow non-foetal weight loss at calving (NFW) was calculated as ΔLWC minus CBW. Pearson's correlational analysis and simple linear regressions were used to identify associations between all variables measured. No correlations were found between ΔLWC and pre-LW (p = 0.52), or post-LW (p = 0.14). However, positive associations were observed between ΔLWC and CBW (p < 0.001, R2 = 0.56) and NFW (p < 0.001, R2 = 0.90). Thus, the results suggest that 56% of the variation in ΔLWC is attributed to the calf weight, and consequently could be used as an indicator of CBW. Remote, in-paddock weighing systems have the potential to provide timely and accurate LW data of breeding cows to improve calving management and productivity.

Maternal periconceptional and first trimester protein restriction in beef heifers: effects on maternal performance and early fetal growth

This study evaluated the effect of protein restriction during the periconception (PERI) and first trimester (POST) periods on maternal performance, physiology and early fetal growth. Yearling nulliparous heifers (n=360) were individually fed a diet high or low in protein (HPeri and LPeri respectively) beginning 60 days before conception. From 24 to 98 days post-conception (dpc), half of each treatment group changed to the alternative post-conception high- or low-protein diet (HPost and LPost respectively), yielding four groups in a 2×2 factorial design with a common diet until parturition. Protein restriction was associated with lower bodyweight subsequent to reduced (but positive) average daily weight gain (ADG) during the PERI and POST periods. During the POST period, ADG was greater in LPeri than HPeri heifers and tended to be greater in LPost than HPost heifers during the second and third trimester. Bodyweight was similar at term. The pregnancy rate did not differ, but embryo loss between 23 and 36 dpc tended to be greater in LPeri than HPeri heifers. Overall, a greater proportion of male fetuses was detected (at 60 dpc 63.3% male vs 36.7% female). Protein restriction altered maternal plasma urea, non-esterified fatty acids, progesterone, leptin and insulin-like growth factor 1 at critical stages of fetal development. However, profiles varied depending on the sex of the conceptus.

Maternal Vitamin and Mineral Supplementation and Rate of Maternal Weight Gain Affects Placental Expression of Energy Metabolism and Transport-Related Genes

Maternal nutrients are essential for proper fetal and placental development and function. However, the effects of vitamin and mineral supplementation under two rates of maternal weight gain on placental genome-wide gene expression have not been investigated so far. Furthermore, biological processes and pathways in the placenta that act in response to early maternal nutrition are yet to be elucidated. Herein, we examined the impact of maternal vitamin and mineral supplementation (from pre-breeding to day 83 post-breeding) and two rates of gain during the first 83 days of pregnancy on the gene expression of placental caruncles (CAR; maternal placenta) and cotyledons (COT; fetal placenta) of crossbred Angus beef heifers. We identified 267 unique differentially expressed genes (DEG). Among the DEGs from CAR, we identified ACAT2, SREBF2, and HMGCCS1 that underlie the cholesterol biosynthesis pathway. Furthermore, the transcription factors PAX2 and PAX8 were over-represented in biological processes related to kidney organogenesis. The DEGs from COT included SLC2A1, SLC2A3, SLC27A4, and INSIG1. Our over-representation analysis retrieved biological processes related to nutrient transport and ion homeostasis, whereas the pathways included insulin secretion, PPAR signaling, and biosynthesis of amino acids. Vitamin and mineral supplementation and rate of gain were associated with changes in gene expression, biological processes, and KEGG pathways in beef cattle placental tissues.

Strategies to improve the efficiency of beef cattle production

Globally, there are approximately one billion beef cattle, and compared with poultry and swine, beef cattle have the poorest conversion efficiency of feed to meat. However, these metrics fail to consider that beef cattle produce high-quality protein from feeds that are unsuitable for other livestock species. Strategies to improve the efficiency of beef cattle are focusing on operational and breeding management, host genetics, functional efficiency of rumen and respiratory microbiomes, and the structure and composition of feed. These strategies must also consider the health and immunity of the herd as well as the need for beef cattle to thrive in a changing environment. Genotyping can identify hybrid vigor with positive consequences for animal health, productivity, and environmental adaptability. The role of microbiome–host interactions is key in efficient nutrient digestion and host health. Microbial markers and gene expression patterns within the rumen microbiome are being used to identify hosts that are efficient at fibre digestion. Plant breeding and processing are optimizing the feed value of both forages and concentrates. Strategies to improve the efficiency of cattle production are a prerequisite for the sustainable intensification needed to satisfy the future demand for beef.

Comparison of Gene Editing Versus Conventional Breeding to Introgress the POLLED Allele Into the Tropically Adapted Australian Beef Cattle Population

Dehorning is the process of physically removing horns to protect animals and humans from injury, but the process is costly, unpleasant, and faces increasing public scrutiny. Genetic selection for polled (hornless), which is genetically dominant to horned, is a long-term solution to eliminate the need for dehorning. However, due to the limited number of polled Australian Brahman bulls, the northern Australian beef cattle population remains predominantly horned. The potential to use gene editing to produce high-genetic-merit polled cattle was recently demonstrated. To further explore the concept, this study simulated introgression of the POLLED allele into a tropically adapted Australian beef cattle population via conventional breeding or gene editing (top 1% or 10% of seedstock bulls/year) for 3 polled mating schemes and compared results to baseline selection on genetic merit (Japan Ox selection index, $JapOx) alone, over the course of 20 years. The baseline scenario did not significantly decrease the 20-year HORNED allele frequency (80%), but resulted in one of the fastest rates of genetic gain ($8.00/year). Compared to the baseline, the conventional breeding scenarios where polled bulls were preferentially used for breeding, regardless of their genetic merit, significantly decreased the 20-year HORNED allele frequency (30%), but resulted in a significantly slower rate of genetic gain ($6.70/year, P ≤ 0.05). The mating scheme that required the exclusive use of homozygous polled bulls, resulted in the lowest 20-year HORNED allele frequency (8%), but this conventional breeding scenario resulted in the slowest rate of genetic gain ($5.50/year). The addition of gene editing the top 1% or 10% of seedstock bull calves/year to each conventional breeding scenario resulted in significantly faster rates of genetic gain (up to $8.10/year, P ≤ 0.05). Overall, our study demonstrates that, due to the limited number of polled Australian Brahman bulls, strong selection pressure on polled will be necessary to meaningfully increase the number of polled animals in this population. Moreover, these scenarios illustrate how gene editing could be a tool for accelerating the development of high-genetic-merit homozygous polled sires to mitigate the current trade-off of slower genetic gain associated with decreasing HORNED allele frequency in the Australian Brahman population.

Assessing Extensive Semi-Arid Rangeland Beef Cow-Calf Welfare in Namibia: Part 1: Comparison Between Farm Production System's Effect on the Welfare of Beef Cows

A proposed animal welfare assessment protocol for semi-arid rangeland-based cow-calf systems in Namibia combined 40 measures from a protocol developed for beef cattle in New Zealand with additional Namibia-specific measures. Preliminary validation of the protocol had been undertaken with five herds in one semi-commercial village. The aim of the current study was to apply this protocol and compare animal welfare across three cow-calf production systems in Namibia. A total of 2529 beef cows were evaluated during pregnancy testing in the yards of 17 commercial, 20 semi-commercial, and 18 communal (total: 55) herds followed by an assessment of farm resources and a questionnaire-guided interview. Non-parametric tests were used to evaluate the difference in the welfare scores between the production systems. The results indicated a discrepancy of animal welfare between the three farm types, with a marked separation of commercial farms from semi-commercial, and communal village farms in the least. The differences in these production systems were mainly driven by economic gains through access to better beef export market for commercial farms and semi-commercial villages, as well as by the differences in the available grazing land, facility designs/quality, and traditional customs in the village systems. The results indicate an advantage of commercialization over communalization.

Lethal control reduces the relative abundance of dingoes but not cattle production impacts

ContextLethal control through the application of 1080 baits is widely used in Australia to manage the negative impacts of wild dogs (dingoes, wild domestic dogs and their hybrids) on cattle production, but its effectiveness in this regard is not well understood. AimsTo evaluate the efficacy of once yearly 1080 baiting on dingoes and its effects in mitigating predation and sublethal impacts on beef cattle. MethodsA replicated experiment with two paired treatments (1080 poisoned and non-poisoned) was conducted on each of four cattle stations of 3782–10850km2, over 2.5 years (2000–02) in the southern Northern Territory. The study was undertaken in relatively good rainfall years. Key resultsTrack-based surveys indicated that dingo abundance declined on poisoned relative to non-poisoned areas immediately following a single baiting episode. However, there was no detectable difference about 8 months after baiting. No difference was detected in observed levels of calf damage or calf loss between poisoned and non-poisoned areas. ConclusionsThe results add to the growing body of consistent evidence that contemporary dingo control practices yield little benefit to rangeland beef producers most of the time. ImplicationsRoutine dingo baiting (as currently undertaken) may be largely unnecessary for beef cattle producers in arid and semiarid areas. Alternative strategies and practices to reduce dingo mauling and predation impacts should be investigated using replicated and controlled field studies.

The effect of molasses nitrate lick blocks on supplement intake, bodyweight, condition score, blood methaemoglobin concentration and herd scale methane emissions in Bos indicus cows grazing poor quality forage

Context The Australian government has approved a greenhouse gas (GHG) offset method that requires cattle to consume nitrate in the form of a lick block. Field studies demonstrating the effectiveness of this methodology have not been previously reported. Aims This experiment was conducted to determine the effects on productivity and health when nitrate lick blocks were provided as a supplement to grazing beef cattle. We hypothesised that beef cattle given access to nitrate lick blocks would have similar productivity compared with cattle offered urea lick blocks. Methods Bos indicus breeding cows (n = 76) grazed a 467-ha paddock near Charters Towers, Queensland, between May and November 2014. A two-way remote automatic drafting system enabled allocation of cattle to different treatments while grazing in a common paddock. Treatments were 30% urea lick blocks (30U), or molasses nitrate lick blocks (MNB). At monthly intervals liveweight (LW), body condition score (BCS), and blood methaemoglobin concentration were recorded. Estimates of individual supplement intake were made on three separate occasions using a lithium marker technique. Results Mean daily supplement intake (±s.e.m.) of 30U (122 ± 13 g) was greater (P &lt; 0.001) than MNB (67 ± 8 g). Lesser MNB intake was associated with greater variability for individual supplement intake, a greater proportion of non-consumers of supplement during July (P &lt; 0.05) and reduced voluntary supplement intake until October (P &lt; 0.001). Increasing MNB consumption during October and November was accompanied by elevated blood methaemoglobin concentration (P &lt; 0.001). It was estimated that cattle offered MNB had insufficient supplementary nitrogen intake throughout the study to resolve rumen degradable nitrogen deficiency from grazed forage. Consequently, cattle provided access to MNB demonstrated conceptus free liveweight loss and lesser BCS compared with cattle treated with 30U (P &lt; 0.001). Conclusion Nitrate lick blocks were ineffective as a dual-purpose non-protein nitrogen supplement and methane mitigant for beef cattle grazing poor quality forage. Further field experiments are required to determine if there may be situations where this GHG offset methodology is efficacious. Implications Caution is advised in implementing GHG mitigation methods that involve the use of nitrate lick blocks.

Effect of Animal Welfare on the Reproductive Performance of Extensive Pasture-Based Beef Cows in New Zealand

One key area where animal welfare may relate to productivity is through reproductive performance. This study assesses welfare on 25 extensively managed pastoral New Zealand beef farms, and explores the relationship between welfare and reproductive performance. Relationships between welfare measures and key reproductive performance indicators (pregnancy rate, weaning rate, mating period and bull: cow ratio) are investigated using an exploratory principal components analysis and linear regression model. Seven welfare measures (thinness, poor rumen fill, dirtiness, blindness, mortality, health checks of pregnant cows and yarding frequency/year) showed a potential influence on reproductive performance, and lameness was retained individually as a potential measure. Mean pregnancy rates, in both 2018 (PD18) and 2017 (PD17), were ~91% and mean weaning rate was 84%. Of the welfare measures, only lameness had a direct association with pregnancy rate, as well as a confounding effect on the association between mating period and pregnancy rate. The bull: cow ration (mean 1:31) and reproductive conditions (dystocia, abortion, vaginal prolapse) did not influence pregnancy and weaning rates. In the study population, there was no clear association between welfare and reproductive performance, except for the confounding effects of lameness.

Genetic Parameters for Age at First Calving and First Calving Interval of Beef Cattle

Simple Summary

Reproductive performance of beef cows affects the profitability of beef production systems. Heritability of fertility traits is generally low, which means that there is a great influence of the nongenetic environmental factors. Selection based on breeding value is an effective way to improve fertility traits, and the knowledge of genetic parameters is necessary for this approach. In this study, the two most common fertility traits—the age at first calving and first calving interval are evaluated. It was found that genetic parameters and genetic correlation between these two traits differ according to population structure (multi-breed population, the population of Aberdeen Angus, and Charolais breed). A breeding strategy should be developed within a breed.

Abstract

The objective of this study was to estimate genetic parameters for age at first calving (AFC) and first calving interval (FCI) for the entire beef cattle population and separately for the Charolais (CH) and Aberdeen Angus (AA) breeds in the Czech Republic. The database of performance testing between the years 1991 and 2019 was used. The total number of cows was 83,788 from 11 breeds. After editing, the data set contained 33,533 cows, including 9321 and 4419 CH and AA cows, respectively. The relationship matrix included 85,842 animals for the entire beef population and 24,248 and 11,406 animals for the CH and AA breeds, respectively. A multibreed multitrait animal model was applied. The estimated heritability was low to moderate. Genetic correlations between AFC and FCI varied depending on the breeds from positive to negative. Differences between variance components suggest that differences between breeds should be considered before selection and breeding strategy should be developed within a breed.

An agent-based simulation model to compare different reproductive strategies in cow-calf operations: Technical performance

The objective of this study was to create a stochastic, agent-based simulation model of a synthetic population of beef cattle, and then use it to compare the technical performance of different reproductive strategies. The model was parameterized using data from a real beef cattle herd and from the peer-reviewed scientific literature to represent a Nelore cattle herd in the state of São Paulo, Brazil. Ten scenarios were evaluated: natural mating (NM) only (ONM); one timed artificial insemination (TAI) plus NM (1TAI + NM); two TAI plus NM, with 24, 32, and 40 days between inseminations (2TAI/24 + NM, 2TAI/32 + NM, and 2TAI/40 + NM, respectively); three TAI without NM, with 24, 32, and 40 days between TAI (3TAI/24, 3TAI/32, and 3TAI/40, respectively); and three TAI plus NM, with 24 and 32 days (3TAI/24 + NM and 3TAI/32 + NM, respectively). NM began 10 days after the last TAI and was performed until the end of the breeding season. The size of the female herd was set to contain up to 400 individuals. The bull population was established at 0, 7, or 15 bulls depending on the used scenario. Simulation was performed for 5000 days. The outcomes for each scenario are means ± S.E. assessed on 32 farms at 1-day time intervals and on an animal-by-animal basis after steady state was reached (1825 days). The 3TAI/24 + NM scenario resulted in a greater number of births (279.85 ± 0.47 births), while the ONM scenario had the least value (202.38 ± 0.43 births). The heaviest males and females at weaning belonged to 3TAI/24, with 190.85 ± 0.17 kg for males and 173.89 ± 0.13 kg for females. The ONM scenario had the lightest males (166.84 ± 0.18 kg) and females (151.75 ± 0.16 kg). The greatest and least total pregnancy rates were found in 3TAI/24 + NM (0.91 ± 0.00) and ONM (0.62 ± 0.00), respectively. The ONM scenario required 52.5 days more than scenarios that included TAI to reach 50% of pregnancy. The greatest ages at culling for cows was 3TAI/24 + NM (3658.88 ± 10.41 days). In contrast, the lowest age at culling was found in ONM (2823.93 ± 8.28 days). We concluded that the proposed model represents the main interactions of a real beef cattle herd. It has all the advantages of a physical experiment, but does not require incurring significant expenses nor altering the real system. This study offers evidence that the scenarios that present the best technical performance are those that used TAI with a 24-day interval between inseminations.

Veterinarians' Knowledge, Attitudes and Practices Associated with Bovine Viral Diarrhoea Virus Control and Prevention in South-East Australia

Simple Summary

Bovine Viral Diarrhoea Virus is a disease of cattle that causes production losses. Despite the virus being widespread across Australia, there are no government or industry-led programs to mitigate the impacts or eliminate Bovine Viral Diarrhoea Virus. Veterinarians were surveyed about their knowledge, attitudes and recommended practices regarding Bovine Viral Diarrhoea Virus and its control. We found that veterinarians’ knowledge of Bovine Viral Diarrhoea Virus in their region is limited, and their attitudes and recommendations for controlling the virus do not always align with those of producers. For example, veterinarians are concerned about the welfare and potential for disease spread associated with control measures involving persistently infected cattle, including a previously undocumented practice in which producers administer blood from persistently infected cattle into naïve cattle as a form of vaccination. This study highlights that a greater understanding of producers’ and veterinarians’ values is needed before Bovine Viral Diarrhoea Virus control could be implemented at a regional or country level.

Abstract

In Australia, the responsibility and associated costs for the control and prevention of Bovine Viral Diarrhoea Virus (BVDV) rest solely with producers. Veterinarians provide producers with farm-specific options for BVDV management and support BVDV control and elimination in their region. We surveyed veterinarians to determine their knowledge, attitudes and practices (KAP) associated with BVDV control in south-east Australia. We found that veterinarians’ recommendations do not always align with producers’ control measures. Veterinarians were uncertain about BVDV prevalence and the proportion of producers using BVDV control measures in their regions. Veterinarians generally promoted biosecurity and vaccination, and were concerned about the welfare and additional disease risks associated with persistently infected (PI) cattle. Veterinarians highlighted concerns about disease risks associated with a previously undocumented practice in which producers collect blood from PI cattle to administer to BVDV naïve cattle; termed “vampire vaccination” in this study. A greater understanding of the burden, impact and economics of BVDV is needed to align veterinarians’ and producers’ KAP to improve BVDV management on farms, and more appreciation of veterinarians’ and producers’ values is needed before BVDV control could be implemented at a regional or country level.

Barriers to entering race training before 4 years of age for Thoroughbred horses born in the 2014 Australian foal crop

Currently, there is a paucity of data on the barriers for Australian Thoroughbred horses transitioning from stud farm to racetrack. This paper reports the reasons why horses failed to enter race training and documents their exit destinations. Biographical records of Australian Thoroughbred horses born in 2014 were investigated to determine the number of horses that had not officially entered race training by the start of the 4-year old racing season (1 August 2018). Of the 13,677 foals born in 2014, 66% had commenced training and 51% had raced before the beginning of their 4-year-old season in Australia. A sampling frame based on the post code of the premises where foals were born and records from Racing Australia were used to select a geographically representative sample of the 2014 Australian Thoroughbred foal crop (n = 4,124). From the population eligible for sampling 1,275 horses that had not entered training were enrolled in the survey and their breeders were sent an online questionnaire with follow-up phone calls for those who had not responded. Of the 633 responses (50% of 1275) the most frequent outcomes for horses were: death (38%, n = 239), participation in the racing industry in their 4-year old racing season (24%, n = 154) and retirement (16%, n = 100) either as Australian Stud Book (ASB) bloodstock (n = 17), or as horses rehomed outside the Thoroughbred industry (n = 83). Illness or injury was the most frequent reason for horses not entering race training that were ASB bloodstock, rehomed or deceased. There was a loss of traceability at the point of sale with most horses sold at 1 year of age. This study provides important information on the reasons, alternative outcomes and gaps in traceability for horses not entering training prior to the 4-year-old racing season.

Characterization of Vaginal Microbiota Associated with Pregnancy Outcomes of Artificial Insemination in Dairy Cows

The profitability of the dairy and beef industries is largely affected by the actually achieved reproductive efficiency. Although a large proportion of cows worldwide are bred by artificial insemination (AI) services, many potential factors affecting the outcome of pregnancy by AI remain to be addressed. In the present study, we investigated the vaginal microbiota by high-throughput sequencing of 16S rRNA gene and analyzed their association with differential pregnancy outcomes (i.e., pregnant vs. nonpregnant) of multiple AI services in dairy cows. Sequencing of the V3-V4 region totally produced 512,046 high-quality sequences that were computationally clustered into 2,584 operational taxonomic units (OTUs). All OTUs were taxonomically assigned to 10 bacterial phyla. There were statistically significant differences among the three AI service times (T1, T2 and T3) with respect to the Shannon index and number of observed OTUs (p < 0.05). Bray-Curtis distance-based PCoA analysis also revealed that T2 group could be significantly distinguished from T1 and T3. However, no significant difference between the pregnant and nonpregnant cows was found in confidence regarding both alpha diversity and beta diversity. These results could help us better understand the possible influence of vaginal microbial community on pregnancy outcomes of AI service in cows.

Use of whole-genome sequence data and novel genomic selection strategies to improve selection for age at puberty in tropically-adapted beef heifers

Background

In tropically-adapted beef heifers, application of genomic prediction for age at puberty has been limited due to low prediction accuracies. Our aim was to investigate novel methods of pre-selecting whole-genome sequence (WGS) variants and alternative analysis methodologies; including genomic best linear unbiased prediction (GBLUP) with multiple genomic relationship matrices (MGRM) and Bayesian (BayesR) analyses, to determine if prediction accuracy for age at puberty can be improved.

Methods

Genotypes and phenotypes were obtained from two research herds. In total, 868 Brahman and 960 Tropical Composite heifers were recorded in the first population and 3695 Brahman, Santa Gertrudis and Droughtmaster heifers were recorded in the second population. Genotypes were imputed to 23 million whole-genome sequence variants. Eight strategies were used to pre-select variants from genome-wide association study (GWAS) results using conditional or joint (COJO) analyses. Pre-selected variants were included in three models, GBLUP with a single genomic relationship matrix (SGRM), GBLUP MGRM and BayesR. Five-way cross-validation was used to test the effect of marker panel density (6 K, 50 K and 800 K), analysis model, and inclusion of pre-selected WGS variants on prediction accuracy.

Results

In all tested scenarios, prediction accuracies for age at puberty were highest in BayesR analyses. The addition of pre-selected WGS variants had little effect on the accuracy of prediction when BayesR was used. The inclusion of WGS variants that were pre-selected using a meta-analysis with COJO analyses by chromosome, fitted in a MGRM model, had the highest prediction accuracies in the GBLUP analyses, regardless of marker density. When the low-density (6 K) panel was used, the prediction accuracy of GBLUP was equal (0.42) to that with the high-density panel when only six additional sequence variants (identified using meta-analysis COJO by chromosome) were included.

Conclusions

While BayesR consistently outperforms other methods in terms of prediction accuracies, reasonable improvements in accuracy can be achieved when using GBLUP and low-density panels with the inclusion of a relatively small number of highly relevant WGS variants.

Minimizing animal welfare harms associated with predation management in agro-ecosystems

The impacts of wild predators on livestock are a common source of human-wildlife conflict globally, and predators are subject to population control for this reason in many situations. Animal welfare is one of many important considerations affecting decisions about predation management. Recent studies discussing animal welfare in this context have presented arguments emphasizing the importance of avoiding intentional harm to predators, but they have not usually considered harms imposed by predators on livestock and other animals. Efforts to mitigate predation impacts (including 'no control' approaches) cause a variety of harms to predators, livestock and other wildlife. Successfully minimizing the overall frequency and magnitude of harms requires consideration of the direct, indirect, intentional and unintentional harms imposed on all animals inhabiting agricultural landscapes. We review the harms resulting from the management of dingoes and other wild dogs in the extensive beef cattle grazing systems of Australia to illustrate how these negative impacts can be minimized across both wild and domestic species present on a farm or in a free-ranging livestock grazing context. Similar to many other predator-livestock conflicts, wild dogs impose intermittent harms on beef cattle (especially calves) including fatal predation, non-fatal attack (mauling and biting), pathogen transmission, and fear- or stress-related effects. Wild dog control tools and strategies impose harms on dingoes and other wildlife including stress, pain and death as a consequence of both lethal and non-lethal control approaches. To balance these various sources of harm, we argue that the tactical use of lethal predator control approaches can result in harming the least number of individual animals, given certain conditions. This conclusion conflicts with both traditional (e.g. continuous or ongoing lethal control) and contemporary (e.g. predator-friendly or no-control) predation management approaches. The general and transferable issues, approaches and principles we describe have broad applicability to many other human-wildlife conflicts around the world.

Calf loss in northern Australia: a systematic review

Calf mortality is a key issue for the north Australian beef industry; however, the sector faces several challenges that preclude the detection and reduction of calf mortality rates. A systematic literature review methodology was employed to explore scientific literature describing the scope of calf loss in northern Australia. Online databases were used to locate articles reporting on beef calf mortality rates within the north Australian region. Articles (n=43) consisting of 668 beef cattle cohorts were retrieved that reported calf mortality between 1936 and 2014. Of these, 13 different observation periods were identified. Most cohorts (n=201) examined mortality between the pregnancy to weaning period, whereas only 20 cohorts in four studies were located that investigated calf mortality in the perinatal and postnatal periods. A broad seasonal and regional influence was identified, however, the dilution of the datasets due to the high number of timeline variations, prevented robust statistical analysis and the further examination of influential factors, such as breed. The results of the systematic literature review indicate that the resolution of the data available does not allow for producers or researchers to accurately target the occurrence or cause of calf mortality. Experimental protocols for future research pertaining to reproductive efficiency and calf loss in northern Australia should be standardised. Consistency in reporting factors and periods must first occur for robust statistical analyses to be achieved.

Effects of Separation of Cows and Calves on Reproductive Performance and Animal Welfare in Tropical Beef Cattle

Nursing a calf suppresses postpartum ovarian activity prolonging the period of anestrus. Diverse methods are used to reduce the effect of suckling; the most popular, restricted suckling, reduces the number of encounters mother-calf. Temporal weaning of the calf for periods of 24 h, 48 h, or even 72 h also suppress the effect of suckling and is commonly applied to cow-calf operations in the tropics. Early weaning of the calf, usually three to five months after birth, is a practice gaining popularity over the traditional system of weaning at seven months. Furthermore, the use of nose-flaps in the calf to avoid suckling is a common procedure in South America. Finally, weaning during the first week after calving is an established method to reduce postpartum anestrus. The objective of the present review is to discuss the effects of these methods on the reproductive performance of beef cattle and their animal welfare implications.

Genetic Polymorphisms in LTF/EcoRI and TLR4/AluI loci as candidates for milk and reproductive performance assessment in Holstein cattle

The aim of this study was to explore the genetic polymorphisms in LTF/EcoRI and TLR4/AluI loci and their association with milk and reproductive performance in Holstein cattle. A randomly selected 800 Holstein dairy cows from two dairy farms (400 animals each) in Egypt were used. Based on the two farm records, association between LTF/EcoRI genotypes and milk performance traits (order of lactation, daily milk yield, days in milk, corrected milk at 305 day and dry period) was carried out. Meanwhile, exploring of TLR4/AluI genotypes effect was done on data for reproductive performance (age at first freshening, calving interval, number of services per conception, ovarian rebound and days open). DNA was extracted from blood samples collected from Holstein dairy cows of the both farms and restriction analysis of 301-bp PCR products of LTF gene revealed two genotypes: AA genotype (301 bp) and AB genotype (301, 201 and 100 bp). Meanwhile, restriction analysis of 382-bp PCR products of TLR4 gene digested with AluI yielded two alleles (A and B) and three genotypes (AA, AB and BB). The A allele was indicated by two bands at 300 and 82 bp, and the B allele resulted in three fragments of 160, 140 and 82 bp. There was a significant association (p ≤ 0.05) between LTF genotypes and milk performance traits except for days in milk. The TLR4 genotypes had significant effects (p ≤ 0.05) on age at first freshening, calving interval, number of services per conception, ovarian rebound and days open. Ordinal logistic regression statistical model also revealed that it is possible to calculate high reproductive performance traits and to predict favourable dairy cows based on LTF and TLR4 genotypes. This research reveals the effectiveness of LTF/EcoRI and TLR4/AluI loci as candidates for reproductive performance assessment in Holstein cattle.

Dingo baiting did not reduce fetal/calf loss in beef cattle in northern South Australia

Beef cattle production is the major agricultural pursuit in the arid rangelands of Australia. Dingo predation is often considered a significant threat to production in rangeland beef herds, but there is a need for improved understanding of the effects of dingo baiting on reproductive wastage. We experimentally compared fetal/calf loss on baited and non-baited treatment areas within three northern South Australian beef herds over a 2–4-year period. At re-musters, lactation was used to determine the outcomes of known pregnancies. Potential explanatory factors for fetal/calf loss (dingo baiting, dingo activity, summer heat, cow age, seasonal conditions, activity of dingo prey and selected livestock diseases) were investigated. From 3145 tracked pregnancies, fetal/calf loss averaged 18.6%, with no overall significant effect of baiting. Fetal/calf loss averaged 27.3% for primiparous (first pregnancy) heifers and 16.8% for multiparous (2nd or later calf) cows. On average, dingo-activity indices were 59.3% lower in baited treatments than in controls, although background site differences in habitat, weather and previous dingo control could have contributed to these lower indices. The overall scale and timing of fetal/calf loss was not correlated with dingo activity, time of year, a satellite-derived measure of landscape greenness (normalised difference vegetation index), or activity of alternative dingo prey. Limited blood testing suggested that successful pregnancy outcomes, especially in primiparous heifers, may have been reduced by the livestock diseases pestivirus and leptospirosis. The percentage occurrence of cattle hair in dingo scats was higher when seasonal conditions were poorer and alternative prey less common, but lack of association between fetal/calf loss and normalised difference vegetation index suggests that carrion feeding, rather than calf predation, was the more likely cause. Nevertheless, during the fair to excellent prevailing seasons, there were direct observations of calf predation. It is likely that ground baiting, as applied, was ineffective in protecting calves, or that site effects, variable cow age and disease confounded our results.

Peri-conception and first trimester diet modifies reproductive development in bulls

Nutritional perturbation during gestation alters male reproductive development in rodents and sheep. In cattle both the developmental trajectory of the feto–placental unit and its response to dietary perturbations is dissimilar to that of these species. This study examined the effects of dietary protein perturbation during the peri-conception and first trimester periods upon reproductive development in bulls. Nulliparous heifers (n = 360) were individually fed a high- or low-protein diet (HPeri and LPeri) from 60 days before conception. From 24 until 98 days post conception, half of each treatment group changed to the alternative post-conception high- or low-protein diet (HPost and LPost) yielding four treatment groups in a 2 × 2 factorial design. A subset of male fetuses (n = 25) was excised at 98 days post conception and fetal testis development was assessed. Reproductive development of singleton male progeny (n = 40) was assessed until slaughter at 598 days of age, when adult testicular cytology was evaluated. Low peri-conception diet delayed reproductive development: sperm quality was lowered during pubertal development with a concomitant delay in reaching puberty. These effects were subsequent to lower FSH concentrations at 330 and 438 days of age. In the fetus, the low peri-conception diet increased the proportion of seminiferous tubules and decreased blood vessel area in the testis, whereas low first trimester diet increased blood vessel number in the adult testis. We conclude that maternal dietary protein perturbation during conception and early gestation may alter male testis development and delay puberty in bulls.

Using Walk-over-Weighing technology for parturition date determination in beef cattle

The northern Australian beef industry is dominated by cow-calf operations where reproductive efficiency is a major profit driver. The postpartum anoestrus interval is a major contributor to an animal’s reproductive efficiency and is influenced by genetic selection. The genetic trait that measures an animal’s postpartum anoestrus interval is the days to calving estimated breeding value and a key requirement is knowledge of the cow’s calving date. Traditionally calving date is recorded using laborious and costly methods that are impeding the recording and hence the accuracy of genetic predictions for this trait by the northern Australian seedstock industry. The present experiment used Walk-over-Weighing technology to automatically record animal weights as cattle enter a restricted area where they access water. With the use of a novel method to accurately assess weights, the growth paths of cows were tracked from late gestation to post-calving. The calving date was visualised in the growth paths of most cows (78.3%) and a custom algorithm was able to automatically detect the calving date within 10 days of the observed calving period for 63% of cows. The use of Walk-over-Weighing to record calving date provides the opportunity to increase the recording of the days to calving estimated breeding value in the northern seedstock industry, thereby increasing reproductive efficiency and improving the profitability of northern beef producers.

Using temporal associations to determine postpartum oestrus in tropical beef cows

The radio frequency identification (RFID) technology introduced with the National Livestock Identification System has increased the precision of livestock management. Tag readers incorporated in walk-over-weighing systems have enabled automated collection of daily RFID sequential data as cattle access water. The temporal sequence of individuals accessing a watering point in a rangeland grazing system could potentially provide knowledge of key aspects of animal behaviour. The current study investigated the use of the shortest daily average interval of time from cow to bull (TTB) coming to water over a 29-day period to predict postpartum oestrus events. Fifteen Brahman and 15 Belmont Red cows mated to bulls of the same breed in separate paddocks were fitted with proximity loggers, heat-mount detectors and were ovarian-scanned with ultrasonics to determine the timing of postpartum oestrus. The data collected from these devices were compared with RFID sequence data of the bulls following cows to water to evaluate whether TTB alone could predict oestrus activity. At the start of the experimental period, mean (±s.d.) weight and days postpartum of the Brahman cows were 527 (±43.4) kg and 89 (±18.4) days respectively, and of the Belmont Red cows 513 (±54.1) kg and averaged 66 (±19.6) days postpartum. Six of the 15 Brahman cows and 9 of the 15 Belmont Red cows displayed oestrus activity, as indicated by increased contact with the bull, an activated heat-mount detector and the presence of an ovarian corpus luteum. The sensitivity and specificity of TTB as an indicator of oestrus events across the groups were 0.65 and 0.60 respectively. Temporal sequence data have the potential to contribute to the determination of oestrus and date of conception.

Comparative study of fertilization rates of C57BL/6NKorl and C57BL/6N mice obtained from two other sources

C57BL/6N is the most widely used inbred mouse strain applied in a wide variety of research areas including cancer, cardiovascular biology, developmental biology, diabetes and obesity, genetics, immunology, neurobiology, and sensorineural research. To compare the fertilization rates of C57BL/6NKorl mice with two commercial C57BL/6N stocks, differences in reproductive organ structures, sperm and egg numbers, fertilization rates, and embryo development rates among C57BL/6NKorl (Korea FDA source), C57BL/6NA (USA source), and C57BL/6NB (Japan source) mice were determined. Among the stocks, no significant differences were detected in organ weight and histological structure of male and female reproductive organs, although body weight was higher in C57BL/6NKorl mice than that in the other groups. The concentration and morphology of sperm and eggs in C57BL/6NKorl mice were similar to those of C57BL/6NA and C57BL/6NB mice. Furthermore, the three stocks had similar in vitro fertilization and embryo development rates, although these rates tended to be higher in C57BL/6NB mice. Pup body weight was higher in C57BL/6NKorl and C57BL/6NB mice than that in C57BL/6NA mice. The results of the present study suggest that C57BL/6NKorl, C57BL/6NA, and C57BL/6NB mice obtained from three different sources have similar fertilization and embryo development rates, although there were slight differences in the magnitude of their responses rates.

The effect of weight and age on pregnancy rates in Brahman heifers in northern Australia

The performance of Brahman heifers at their first mating as yearlings (4-year groups of ~100 per year) grazing on improved pasture in the Douglas Daly region and as 2 year olds (3-year groups of ~100 per year) grazing on native pasture in the Victoria River District was studied. The relationships between pre-mating weight and pregnancy rate were established for Brahman heifers mated as yearlings on improved pasture, and as 2 year olds on native pasture with pre-mating weights recorded in late October/early November (before the wet season starts) and in late December (just before the start of mating). These relationships were found to be different indicating that there is an interaction between age and weight that modifies the effect of weight. The relationships were used to model pregnancy rates that are likely to result from different pre-mating weights for these three scenarios. These estimates can be used to identify target mating weights for different situations, and to predict the pregnancy rates for groups of heifers, which will be useful in budgeting and assessing the profitability of different management strategies.

Effects of ambient air temperature, humidity, and wind speed on seminal traits in Braford and Nellore bulls at the Brazilian Pantanal

The aim of this study was to evaluate the bioclimatic thermal stress assessed by Equivalent Temperature Index (ETI) and Temperature Humidity Index (THI) on Braford and Nellore bulls sperm quality during the reproductive seasons at the tropical region in the Brazilian Pantanal. We used 20 bulls aged approximately 24 months at the beginning of the study. Five ejaculates per animal were collected using an electroejaculator. Temperature, air humidity, and wind speed data were collected every hour from the automatic weather station at the National Institute of Meteorology. Infrared thermography images data were collected to assess the testicular temperature gradient in each animal. Data were analyzed with ANOVA using MIXED procedure of SAS and means were compared using Tukey's HSD test. The THI and ETI at 12 days (epididymal transit) were higher in January (89.7 and 28.5, respectively) and February (90.0 and 29.0, respectively) compared to other months (P < 0.01). Total seminal defects differ only in Bradford bulls between the months of November and February. Nellore bulls had lower major defects (MaD) and total defects (TD) compared to Braford. Nellore bulls showed correlation between minor defects (MiD) and THI for 30 days (0.90) and 18 days (0.88; P < 0.05). Braford bulls showed correlation for MaD (0.89) in ETI for 12 days (P < 0.05). Infrared thermography showed no difference between animals. Reproductive response to environmental changes is a consequence of Nellore and Braford adaptation to climate stress conditions. Both THI and ETI environmental indexes can be used to evaluate the morphological changes in the seminal parameters in Nellore or Braford bulls; however, more experiments should be performed focusing on larger sample numbers and also in reproductive assessment during the consecutive years to assess fertility potential.

Candidate Gene Expression in Bos indicus Ovarian Tissues: Prepubertal and Postpubertal Heifers in Diestrus

Growth factors such as bone morphogenetic proteins 6, 7, 15, and two isoforms of transforming growth factor-beta (BMP6, BMP7, BMP15, TGFB1, and TGFB2), and insulin-like growth factor system act as local regulators of ovarian follicular development. To elucidate if these factors as well as others candidate genes, such as estrogen receptor 1 (ESR1), growth differentiation factor 9 (GDF9), follicle-stimulating hormone receptor (FSHR), luteinizing hormone receptor (LHR), bone morphogenetic protein receptor, type 2 (BMPR2), type 1 insulin-like growth factor receptor (IGFR1), and key steroidogenic enzymes cytochrome P450 aromatase and 3-β-hydroxysteroid dehydrogenase (CYP19A1 and HSD3B1) could modulate or influence diestrus on the onset of puberty in Brahman heifers, their ovarian mRNA expression was measured before and after puberty (luteal phase). Six postpubertal (POST) heifers were euthanized on the luteal phase of their second cycle, confirmed by corpus luteum observation, and six prepubertal (PRE) heifers were euthanized in the same day. Quantitative real-time PCR analysis showed that the expression of FSHR, BMP7, CYP19A1, IGF1, and IGFR1 mRNA was greater in PRE heifers, when contrasted to POST heifers. The expression of LHR and HSD3B1 was lower in PRE heifers. Differential expression of ovarian genes could be associated with changes in follicular dynamics and different cell populations that have emerged as consequence of puberty and the luteal phase. The emerging hypothesis is that BMP7 and IGF1 are co-expressed and may modulate the expression of FSHR, LHR and IGFR1, and CYP19A1. BMP7 could influence the downregulation of LHR and upregulation of FSHR and CYP19A1, which mediates the follicular dynamics in heifer ovaries. Upregulation of IGF1 expression prepuberty, compared to postpuberty diestrus, correlates with increased levels FSHR and CYP19A1. Thus, BMP7 and IGF1 may play synergic roles and were predicted to interact, from the expression data (P = 0.07, r = 0.84). The role of these co-expressed genes in puberty and heifers luteal phase merits further research.

Challenges for beef production in smallholder communities with low reproductive management skills: a case study from Northern Lao PDR

Improved large ruminant productivity is increasingly acknowledged as a pathway for the alleviation of rural poverty and food insecurity in smallholder communities in Southeast Asia; yet, in much of Laos, bovine reproductive management is practically absent. Large ruminant reproduction skills were studied, using face-to-face surveys (n=60) of the knowledge, attitudes, and practices (KAP) of farmers, plus an extension of an examination of parameters of reproductive efficiency (n = 1786 cattle and 434 buffalo) in the northern provinces of Luang Prabang and Xieng Khouang. The surveys particularly involved female farmers to provide gender-disaggregated data, with females making up 38.3 % of participants. Results confirmed that KAPs of smallholder farmers on bovine reproductive management were low (34-46 %) with trends toward higher KAP scores in male survey respondents. Poor reproductive parameters were identified in both provinces, with low calving percentages of 54-75 and 45-54 % in cattle and buffalo groups, respectively, and prolonged inter-calving intervals of 14.1-19.8 and 26.0 months for the cattle and buffalo groups, respectively. Improving the reproductive efficiency of large ruminants in the northern upland regions would enable smallholder farmers to be more effectively engaged in the dramatic economic growth of the Southeast Asia region, although these findings indicate that intensive training and supportive interventions are required to improve large ruminant reproductive outcomes in communities that have low-level large ruminant husbandry skills.