Generative adversarial network and texture features applied to automatic glaucoma detection

Validating the Generalizability of Ophthalmic Artificial Intelligence Models on Real-World Clinical Data

Purpose

This study aims to investigate generalizability of deep learning (DL) models trained on commonly used public fundus images to an instance of real-world data (RWD) for glaucoma diagnosis.

Methods

We used Illinois Eye and Ear Infirmary fundus data set as an instance of RWD in addition to six publicly available fundus data sets. We compared the performance of DL-trained models on public data and RWD for glaucoma classification and optic disc (OD) segmentation tasks. For each task, we created models trained on each data set, respectively, and each model was tested on both data sets. We further examined each model's decision-making process and learned embeddings for the glaucoma classification task.

Results

Using public data for the test set, public-trained models outperformed RWD-trained models in OD segmentation and glaucoma classification with a mean intersection over union of 96.3% and mean area under the receiver operating characteristic curve of 95.0%, respectively. Using the RWD test set, the performance of public models decreased by 8.0% and 18.4% to 85.6% and 76.6% for OD segmentation and glaucoma classification tasks, respectively. RWD models outperformed public models on RWD test sets by 2.0% and 9.5%, respectively, in OD segmentation and glaucoma classification tasks.

Conclusions

DL models trained on commonly used public data have limited ability to generalize to RWD for classifying glaucoma. They perform similarly to RWD models for OD segmentation.

Translational Relevance

RWD is a potential solution for improving generalizability of DL models and enabling clinical translations in the care of prevalent blinding ophthalmic conditions, such as glaucoma.

Generative adversarial networks and its applications in the biomedical image segmentation: a comprehensive survey

Recent advancements with deep generative models have proven significant potential in the task of image synthesis, detection, segmentation, and classification. Segmenting the medical images is considered a primary challenge in the biomedical imaging field. There have been various GANs-based models proposed in the literature to resolve medical segmentation challenges. Our research outcome has identified 151 papers; after the twofold screening, 138 papers are selected for the final survey. A comprehensive survey is conducted on GANs network application to medical image segmentation, primarily focused on various GANs-based models, performance metrics, loss function, datasets, augmentation methods, paper implementation, and source codes. Secondly, this paper provides a detailed overview of GANs network application in different human diseases segmentation. We conclude our research with critical discussion, limitations of GANs, and suggestions for future directions. We hope this survey is beneficial and increases awareness of GANs network implementations for biomedical image segmentation tasks.

Machine Learning and Deep Learning Techniques for Optic Disc and Cup Segmentation - A Review

Background

Globally, glaucoma is the second leading cause of blindness. Detecting glaucoma in the early stages is essential to avoid disease complications, which lead to blindness. Thus, computer-aided diagnosis systems are powerful tools to overcome the shortage of glaucoma screening programs.

Methods

A systematic search of public databases, including PubMed, Google Scholar, and other sources, was performed to identify relevant studies to overview the publicly available fundus image datasets used to train, validate, and test machine learning and deep learning methods. Additionally, existing machine learning and deep learning methods for optic cup and disc segmentation were surveyed and critically reviewed.

Results

Eight fundus images datasets were publicly available with 15,445 images labeled with glaucoma or non-glaucoma, and manually annotated optic disc and cup boundaries were found. Five metrics were identified for evaluating the developed models. Finally, three main deep learning architectural designs were commonly used for optic disc and optic cup segmentation.

Conclusion

We provided future research directions to formulate robust optic cup and disc segmentation systems. Deep learning can be utilized in clinical settings for this task. However, many challenges need to be addressed before using this strategy in clinical trials. Finally, two deep learning architectural designs have been widely adopted, such as U-net and its variants.

Detection of Glaucoma from Fundus Images Using Novel Evolutionary-Based Deep Neural Network

Glaucoma is an asymptotic condition that damages the optic nerves of a human eye. Glaucoma is frequently caused due to abnormally high pressure in an eye that leads to permanent blindness. Detecting glaucoma at an initial phase has the possibility of curing this disease, but diagnosing accurately is considered as a challenging task. Therefore, this paper proposes a novel method known as a glaucoma detection system that performs the diagnosis of glaucoma by exploiting the prescribed characteristics. The significant intention of this paper involves diagnosing the glaucoma disease present at the top optical nerve of a human eye. The proposed glaucoma detection has used four different phases namely data preprocessing or enhancement phase, segmentation phase, feature extraction phase, and classification phase. Here, a novel classifier named fractional gravitational search-based hybrid deep neural network (FGSA-HDNN) is developed for the effective classification of glaucoma-infected images from the normal image. Finally, the experimental analysis for the proposed approach and various other techniques are performed, and the accuracy rate while diagnosing glaucoma achieved is 98.75%.

COVID-index: A texture-based approach to classifying lung lesions based on CT images

COVID-19 is an infectious disease caused by a newly discovered type of coronavirus called SARS-CoV-2. Since the discovery of this disease in late 2019, COVID-19 has become a worldwide concern, mainly due to its high degree of contagion. As of April 2021, the number of confirmed cases of COVID-19 reported to the World Health Organization has already exceeded 135 million worldwide, while the number of deaths exceeds 2.9 million. Due to the impacts of the disease, efforts in the literature have intensified in terms of studying approaches aiming to detect COVID-19, with a focus on supporting and facilitating the process of disease diagnosis. This work proposes the application of texture descriptors based on phylogenetic relationships between species to characterize segmented CT volumes, and the subsequent classification of regions into COVID-19, solid lesion or healthy tissue. To evaluate our method, we use images from three different datasets. The results are promising, with an accuracy of 99.93%, a recall of 99.93%, a precision of 99.93%, an F1-score of 99.93%, and an AUC of 0.997. We present a robust, simple, and efficient method that can be easily applied to 2D and/or 3D images without limitations on their dimensionality.

An Effective Approach Based on Deep Residual Google Net Convolutional Neural Network Classifier for the Detection of Glaucoma

Glaucoma is a disease caused by fluid pressure build-up in the inner eye. Early detection of glaucoma is critical as it is expected that 111.8 million people worldwide shall suffer from glaucoma in 2040. In the diagnosis of glaucoma, the use of machine learning method is hoped to be highly promising. This paper provides an important method to master learning to diagnose glaucoma. Initially, human retinal fundus images are preprocessed by means of histogram equalization in order to enhance them. The segmentation is performed by semantic segmentation method, mainly the features are extracted using density with correlation based feature extraction approach. PCA (principal component analysis) methodology is used to choose the most optimal features. Ultimately, through the usage of the Deep residual Google Net CNN Classification method, the retinal image is classified/predicted as regular and abnormal. The Deep residual Google Net CNN classifier is designed to distinguish view patterns with minimal pre-processing from pixel pictures. ORIGA and STARE datasets are used in this work. The findings are then analyzed and contrasted to illustrate the efficacy of the new technique with alternate current techniques. Test accuracy of 99%, Specificity of 98.9% and 100% Sensitivity were achieved. The quantitative results are analyzed for specifications like sensitivity, specificity, accuracy, positive predictive rate, false predictive rate and assured to provide excellent outcomes when compared with traditional methods.

Accuracy of Using Generative Adversarial Networks for Glaucoma Detection During the COVID-19 Pandemic: A Systematic Review and Bibliometric Analysis

Background

Glaucoma leads to irreversible blindness. Globally, it is the second most common retinal disease that leads to blindness, slightly less common than cataracts. Therefore, there is a great need to avoid the silent growth of this disease using recently developed generative adversarial networks (GANs).

Objective

This paper aims to introduce a GAN technology for the diagnosis of eye disorders, particularly glaucoma. This paper illustrates deep adversarial learning as a potential diagnostic tool and the challenges involved in its implementation. This study describes and analyzes many of the pitfalls and problems that researchers will need to overcome to implement this kind of technology.

Methods

To organize this review comprehensively, articles and reviews were collected using the following keywords: (“Glaucoma,” “optic disc,” “blood vessels”) and (“receptive field,” “loss function,” “GAN,” “Generative Adversarial Network,” “Deep learning,” “CNN,” “convolutional neural network” OR encoder). The records were identified from 5 highly reputed databases: IEEE Xplore, Web of Science, Scopus, ScienceDirect, and PubMed. These libraries broadly cover the technical and medical literature. Publications within the last 5 years, specifically 2015-2020, were included because the target GAN technique was invented only in 2014 and the publishing date of the collected papers was not earlier than 2016. Duplicate records were removed, and irrelevant titles and abstracts were excluded. In addition, we excluded papers that used optical coherence tomography and visual field images, except for those with 2D images. A large-scale systematic analysis was performed, and then a summarized taxonomy was generated. Furthermore, the results of the collected articles were summarized and a visual representation of the results was presented on a T-shaped matrix diagram. This study was conducted between March 2020 and November 2020.

Results

We found 59 articles after conducting a comprehensive survey of the literature. Among the 59 articles, 30 present actual attempts to synthesize images and provide accurate segmentation/classification using single/multiple landmarks or share certain experiences. The other 29 articles discuss the recent advances in GANs, do practical experiments, and contain analytical studies of retinal disease.

Conclusions

Recent deep learning techniques, namely GANs, have shown encouraging performance in retinal disease detection. Although this methodology involves an extensive computing budget and optimization process, it saturates the greedy nature of deep learning techniques by synthesizing images and solves major medical issues. This paper contributes to this research field by offering a thorough analysis of existing works, highlighting current limitations, and suggesting alternatives to support other researchers and participants in further improving and strengthening future work. Finally, new directions for this research have been identified.