1
|
Won SY, Soundararajan P, Irulappan V, Kim JS. In-silico, evolutionary, and functional analysis of CHUP1 and its related proteins in Bienertia sinuspersici-a comparative study across C 3, C 4, CAM, and SCC 4 model plants. PeerJ 2023; 11:e15696. [PMID: 37456874 PMCID: PMC10348308 DOI: 10.7717/peerj.15696] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 06/14/2023] [Indexed: 07/18/2023] Open
Abstract
Single-cell C4 (SCC4) plants with bienertioid anatomy carry out photosynthesis in a single cell. Chloroplast movement is the underlying phenomenon, where chloroplast unusual positioning 1 (CHUP1) plays a key role. This study aimed to characterize CHUP1 and CHUP1-like proteins in an SCC4 photosynthetic plant, Bienertia sinuspersici. Also, a comparative analysis of SCC4 CHUP1 was made with C3, C4, and CAM model plants including an extant basal angiosperm, Amborella. The CHUP1 gene exists as a single copy from the basal angiosperms to SCC4 plants. Our analysis identified that Chenopodium quinoa, a recently duplicated allotetraploid, has two copies of CHUP1. In addition, the numbers of CHUP1-like and its associated proteins such as CHUP1-like_a, CHUP1-like_b, HPR, TPR, and ABP varied between the species. Hidden Markov Model analysis showed that the gene size of CHUP1-like_a and CHUP1-like_b of SCC4 species, Bienertia, and Suaeda were enlarged than other plants. Also, we identified that CHUP1-like_a and CHUP1-like_b are absent in Arabidopsis and Amborella, respectively. Motif analysis identified several conserved and variable motifs based on the orders (monocot and dicot) as well as photosynthetic pathways. For instance, CAM plants such as pineapple and cactus shared certain motifs of CHUP1-like_a irrespective of their distant phylogenetic relationship. The free ratio model showed that CHUP1 maintained purifying selection, whereas CHUP1-like_a and CHUP1-like_b have adaptive functions between SCC4 plants and quinoa. Similarly, rice and maize branches displayed functional diversification on CHUP1-like_b. Relative gene expression data showed that during the subcellular compartmentalization process of Bienertia, CHUP1 and actin-binding proteins (ABP) genes showed a similar pattern of expression. Altogether, the results of this study provide insight into the evolutionary and functional details of CHUP1 and its associated proteins in the development of the SCC4 system in comparison with other C3, C4, and CAM model plants.
Collapse
Affiliation(s)
- So Youn Won
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Prabhakaran Soundararajan
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Vadivelmurugan Irulappan
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Jung Sun Kim
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| |
Collapse
|
2
|
Sagun JV, Chow WS, Ghannoum O. Leaf pigments and photosystems stoichiometry underpin photosynthetic efficiency of related C 3 , C-C 4 and C 4 grasses under shade. PHYSIOLOGIA PLANTARUM 2022; 174:e13819. [PMID: 36344438 DOI: 10.1111/ppl.13819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 09/12/2022] [Accepted: 10/31/2022] [Indexed: 06/16/2023]
Abstract
The quantum yield of photosynthesis (QY, CO2 fixed per light absorbed) depends on the efficiency of light absorption, the coupling between light absorption and electron transport, and the coupling between electron transport and carbon metabolism. QY is generally lower in C3 relative to C4 plants at warm temperatures and differs among the C4 subtypes. We investigated the acclimation to shade of light absorption and electron transport in six representative grasses with C3 , C3 -C4 and C4 photosynthesis. Plants were grown under full (control) or 25% (shade) sunlight. We measured the in vivo activity and stoichiometry of PSI and PSII, leaf spectral properties and pigment contents, and photosynthetic enzyme activities. Under control growth-light conditions, C4 species had higher CO2 assimilation rates, which declined to a greater extent relative to the C3 species. Whole leaf PSII/PSI ratios were highest in the C3 species, while QY and cyclic electron flow (CEF) were highest in the C4 , NADP-ME species. Shade significantly reduced leaf PSII/PSI, linear electron flow (LEF) and CEF of most species. Overall, shade reduced leaf absorptance, especially in the green region, as well as carotenoid and chlorophyll contents in C4 more than non-C4 species. The NAD-ME species underwent the greatest reduction in leaf absorptance and pigments under shade. In conclusion, shade compromised QY the least in the C3 and the most in the C4 -NAD-ME species. Different sensitivity to shade was associated with the ability to maintain leaf absorptance and pigments. This is important for maximising light absorption and minimising photoprotection under low light.
Collapse
Affiliation(s)
- Julius Ver Sagun
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
| | - Wah Soon Chow
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, Australia
| | - Oula Ghannoum
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
| |
Collapse
|
3
|
Bellasio C, Ermakova M. Reduction of bundle sheath size boosts cyclic electron flow in C 4 Setaria viridis acclimated to low light. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:1223-1237. [PMID: 35866447 PMCID: PMC9545969 DOI: 10.1111/tpj.15915] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 06/29/2022] [Accepted: 07/07/2022] [Indexed: 05/22/2023]
Abstract
When C4 leaves are exposed to low light, the CO2 concentration in the bundle sheath (BS) cells decreases, causing an increase in photorespiration relative to assimilation, and a consequent reduction in biochemical efficiency. These effects can be mitigated by complex acclimation syndromes, which are of primary importance for crop productivity but are not well studied. We unveil an acclimation strategy involving the coordination of electron transport processes. First, we characterize the anatomy, gas exchange and electron transport of C4 Setaria viridis grown under low light. Through a purposely developed biochemical model, we resolve the photon fluxes and reaction rates to explain how the concerted acclimation strategies sustain photosynthetic efficiency. Our results show that a smaller BS in low-light-grown plants limited leakiness (the ratio of CO2 leak rate out of the BS over the rate of supply via C4 acid decarboxylation) but sacrificed light harvesting and ATP production. To counter ATP shortage and maintain high assimilation rates, plants facilitated light penetration through the mesophyll and upregulated cyclic electron flow in the BS. This shade tolerance mechanism, based on the optimization of light reactions, is possibly more efficient than the known mechanisms involving the rearrangement of carbon metabolism, and could potentially lead to innovative strategies for crop improvement.
Collapse
Affiliation(s)
- Chandra Bellasio
- Department of BiologyUniversity of the Balearic Islands07122PalmaIlles BalearsSpain
- Centre of Excellence for Translational Photosynthesis, Research School of BiologyThe Australian National UniversityActonACT2601Australia
| | - Maria Ermakova
- Centre of Excellence for Translational Photosynthesis, Research School of BiologyThe Australian National UniversityActonACT2601Australia
| |
Collapse
|
4
|
Barabasz-Krasny B, Możdżeń K, Tatoj A, Rożek K, Zandi P, Schnug E, Stachurska-Swakoń A. Ecophysiological Parameters of Medicinal Plant Filipendula vulgaris in Diverse Habitat Conditions. BIOLOGY 2022; 11:biology11081198. [PMID: 36009829 PMCID: PMC9405296 DOI: 10.3390/biology11081198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/14/2022] [Accepted: 08/08/2022] [Indexed: 11/16/2022]
Abstract
This study attempts to determine which of the habitats occupied by Filipendula vulgaris creates better conditions for its growth and development. Selected physiological parameters—PSII activity, chlorophyll content, electrolyte leakage, hydrogen peroxide content as well as biomass, the occurrence of mycorrhiza, and soil characteristics—were investigated. Grassland soils had a higher content of macronutrients and a lower concentration of heavy metals. The degree of colonization of F. vulgaris by AMF (Arum type) oscillated around high values in both types of stands. Plants growing on xerothermic grasslands achieved much better fluorescence parameters than those collected from meadows. Similar results were obtained from the analysis of chlorophyll content. The destabilization degree of cell membranes was significantly higher in plants collected in meadows than in grasslands. Biomass analysis showed higher values of these parameters in grassland plants. In the case of the parameters of fluorescence emission, plants growing on grasslands achieved significantly lower values than plants collected from meadows. The analyses carried out showed that better conditions for growth and physiological activity of F. vulgaris are probably associated with grasslands on a calcareous substrate.
Collapse
Affiliation(s)
- Beata Barabasz-Krasny
- Department of Botany, Institute of Biology, Pedagogical University of Krakow, 30-084 Cracow, Poland
| | | | - Agnieszka Tatoj
- Department of Botany, Institute of Biology, Pedagogical University of Krakow, 30-084 Cracow, Poland
| | - Katarzyna Rożek
- Institute of Botany, Jagiellonian University, 30-387 Cracow, Poland
| | - Peiman Zandi
- Department of Botany, Institute of Biology, Pedagogical University of Krakow, 30-084 Cracow, Poland
- International Faculty of Applied Technology, Yibin University, Yibin 644000, China
- Correspondence:
| | - Ewald Schnug
- Department of Life Sciences, Institute for Plant Biology, Technical University of Braunschweig, 38-106 Braunschweig, Germany
| | | |
Collapse
|
5
|
Wasilewska-Dębowska W, Zienkiewicz M, Drozak A. How Light Reactions of Photosynthesis in C4 Plants Are Optimized and Protected under High Light Conditions. Int J Mol Sci 2022; 23:ijms23073626. [PMID: 35408985 PMCID: PMC8998801 DOI: 10.3390/ijms23073626] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 02/04/2023] Open
Abstract
Most C4 plants that naturally occur in tropical or subtropical climates, in high light environments, had to evolve a series of adaptations of photosynthesis that allowed them to grow under these conditions. In this review, we summarize mechanisms that ensure the balancing of energy distribution, counteract photoinhibition, and allow the dissipation of excess light energy. They secure effective electron transport in light reactions of photosynthesis, which will lead to the production of NADPH and ATP. Furthermore, a higher content of the cyclic electron transport components and an increase in ATP production are observed, which is necessary for the metabolism of C4 for effective assimilation of CO2. Most of the data are provided by studies of the genus Flaveria, where species belonging to different metabolic subtypes and intermediate forms between C3 and C4 are present. All described mechanisms that function in mesophyll and bundle sheath chloroplasts, into which photosynthetic reactions are divided, may differ in metabolic subtypes as a result of the different organization of thylakoid membranes, as well as the different demand for ATP and NADPH. This indicates that C4 plants have plasticity in the utilization of pathways in which efficient use and dissipation of excitation energy are realized.
Collapse
|
6
|
Urban A, Rogowski P, Wasilewska-Dębowska W, Romanowska E. Understanding Maize Response to Nitrogen Limitation in Different Light Conditions for the Improvement of Photosynthesis. PLANTS 2021; 10:plants10091932. [PMID: 34579465 PMCID: PMC8471034 DOI: 10.3390/plants10091932] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 09/03/2021] [Accepted: 09/13/2021] [Indexed: 12/26/2022]
Abstract
The photosynthetic capacity of leaves is determined by their content of nitrogen (N). Nitrogen involved in photosynthesis is divided between soluble proteins and thylakoid membrane proteins. In C4 plants, the photosynthetic apparatus is partitioned between two cell types: mesophyll cells and bundle sheath. The enzymes involved in the C4 carbon cycle and assimilation of nitrogen are localized in a cell-specific manner. Although intracellular distribution of enzymes of N and carbon assimilation is variable, little is known about the physiological consequences of this distribution caused by light changes. Light intensity and nitrogen concentration influence content of nitrates in leaves and can induce activity of the main enzymes involved in N metabolism, and changes that reduce the photosynthesis rate also reduce photosynthetic N use efficiency. In this review, we wish to highlight and discuss how/whether light intensity can improve photosynthesis in maize during nitrogen limitation. We described the general regulation of changes in the main photosynthetic and nitrogen metabolism enzymes, their quantity and localization, thylakoid protein abundance, intracellular transport of organic acids as well as specific features connected with C4 photosynthesis, and addressed the major open questions related to N metabolism and effects of light on photosynthesis in C4 plants.
Collapse
|
7
|
Alvarez-Fernandez R, Penfold CA, Galvez-Valdivieso G, Exposito-Rodriguez M, Stallard EJ, Bowden L, Moore JD, Mead A, Davey PA, Matthews JSA, Beynon J, Buchanan-Wollaston V, Wild DL, Lawson T, Bechtold U, Denby KJ, Mullineaux PM. Time-series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:1363-1386. [PMID: 34160110 DOI: 10.1111/tpj.15384] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 06/14/2021] [Indexed: 05/22/2023]
Abstract
The photosynthetic capacity of mature leaves increases after several days' exposure to constant or intermittent episodes of high light (HL) and is manifested primarily as changes in chloroplast physiology. How this chloroplast-level acclimation to HL is initiated and controlled is unknown. From expanded Arabidopsis leaves, we determined HL-dependent changes in transcript abundance of 3844 genes in a 0-6 h time-series transcriptomics experiment. It was hypothesized that among such genes were those that contribute to the initiation of HL acclimation. By focusing on differentially expressed transcription (co-)factor genes and applying dynamic statistical modelling to the temporal transcriptomics data, a regulatory network of 47 predominantly photoreceptor-regulated transcription (co-)factor genes was inferred. The most connected gene in this network was B-BOX DOMAIN CONTAINING PROTEIN32 (BBX32). Plants overexpressing BBX32 were strongly impaired in acclimation to HL and displayed perturbed expression of photosynthesis-associated genes under LL and after exposure to HL. These observations led to demonstrating that as well as regulation of chloroplast-level acclimation by BBX32, CRYPTOCHROME1, LONG HYPOCOTYL5, CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA-105 are important. In addition, the BBX32-centric gene regulatory network provides a view of the transcriptional control of acclimation in mature leaves distinct from other photoreceptor-regulated processes, such as seedling photomorphogenesis.
Collapse
Affiliation(s)
| | | | | | | | - Ellie J Stallard
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Laura Bowden
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Jonathan D Moore
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Andrew Mead
- School of Life Sciences, Warwick University, Coventry, CV4 7AL, UK
| | - Phillip A Davey
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Jack S A Matthews
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Jim Beynon
- Department of Statistics, Warwick University, Coventry, CV4 7AL, UK
| | | | - David L Wild
- Department of Statistics, Warwick University, Coventry, CV4 7AL, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Ulrike Bechtold
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| | - Katherine J Denby
- Centre for Novel Agricultural Products (CNAP), Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Philip M Mullineaux
- School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex, CO4 3SQ, UK
| |
Collapse
|
8
|
Ermakova M, Bellasio C, Fitzpatrick D, Furbank RT, Mamedov F, von Caemmerer S. Upregulation of bundle sheath electron transport capacity under limiting light in C 4 Setaria viridis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 106:1443-1454. [PMID: 33772896 PMCID: PMC9291211 DOI: 10.1111/tpj.15247] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 02/15/2021] [Accepted: 03/22/2021] [Indexed: 05/22/2023]
Abstract
C4 photosynthesis is a biochemical pathway that operates across mesophyll and bundle sheath (BS) cells to increase CO2 concentration at the site of CO2 fixation. C4 plants benefit from high irradiance but their efficiency decreases under shade, causing a loss of productivity in crop canopies. We investigated shade acclimation responses of Setaria viridis, a model monocot of NADP-dependent malic enzyme subtype, focussing on cell-specific electron transport capacity. Plants grown under low light (LL) maintained CO2 assimilation rates similar to high light plants but had an increased chlorophyll and light-harvesting-protein content, predominantly in BS cells. Photosystem II (PSII) protein abundance, oxygen-evolving activity and the PSII/PSI ratio were enhanced in LL BS cells, indicating a higher capacity for linear electron flow. Abundances of PSI, ATP synthase, Cytochrome b6 f and the chloroplast NAD(P)H dehydrogenase complex, which constitute the BS cyclic electron flow machinery, were also increased in LL plants. A decline in PEP carboxylase activity in mesophyll cells and a consequent shortage of reducing power in BS chloroplasts were associated with a more oxidised plastoquinone pool in LL plants and the formation of PSII - light-harvesting complex II supercomplexes with an increased oxygen evolution rate. Our results suggest that the supramolecular composition of PSII in BS cells is adjusted according to the redox state of the plastoquinone pool. This discovery contributes to the understanding of the acclimation of PSII activity in C4 plants and will support the development of strategies for crop improvement, including the engineering of C4 photosynthesis into C3 plants.
Collapse
Affiliation(s)
- Maria Ermakova
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Chandra Bellasio
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
- University of the Balearic IslandsPalmaIlles Balears07122Spain
| | - Duncan Fitzpatrick
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Robert T. Furbank
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| | - Fikret Mamedov
- Molecular BiomimeticsDepartment of Chemistry – Ångström LaboratoryUppsala UniversityUppsala75 120Sweden
| | - Susanne von Caemmerer
- Australian Research Council Centre of Excellence for Translational PhotosynthesisDivision of Plant ScienceResearch School of BiologyThe Australian National UniversityActonAustralian Capital Territory2601Australia
| |
Collapse
|
9
|
Urban A, Rogowski P, Wasilewska-Dębowska W, Romanowska E. Effect of light on the rearrangements of PSI super-and megacomplexes in the non-appressed thylakoid domains of maize mesophyll chloroplasts. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 301:110655. [PMID: 33218624 DOI: 10.1016/j.plantsci.2020.110655] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 08/25/2020] [Accepted: 08/27/2020] [Indexed: 06/11/2023]
Abstract
We demonstrated the existence of PSI-LHCI-LHCII-Lhcb4 supercomplexes and PSI-LHCI-PSII-LHCII megacomplexes in the stroma lamellae and grana margins of maize mesophyll chloroplasts; these complexes consist of different LHCII trimers and monomer antenna proteins per PSI photocentre. These complexes are formed in both low (LL) and high (HL) light growth conditions, but with different contents. We attempted to identify the components and structure of these complexes in maize chloroplasts isolated from the leaves of low and high light-grown plants after darkness and transition to far red (FR) light of high intensity. Exposition of plants from high and low light growth condition on FR light induces different rearrangements in the composition of super- and megacomplexes. During FR light exposure, in plants from LL, the PSI-LHCI-LHCII-Lhcb4 supercomplex dissociates into free LHCII-Lhcb4 and PSI-LHCI complexes, and these complexes associate with the PSII monomer. This process occurs differently in plants from HL. Exposition to FR light causes dissociation of both PSI-LHCI-LHCII-Lhcb4 supercomplexes and PSI-PSII megacomplexes. These results suggest a different function of super- and megacomplex organization than the classic state transitions model, which assumes that the movement of LHCII trimers in the thylakoid membraneis considered as a mechanism for balancing light absorption between the two photosystems in light stress. The behavior of the complexes described in this article does not seem to be well explained by this model, i.e., it does not seem likely that the primary purpose of these megacomplexes dynamics is to balance excitation pressure. Rather, as stated in this article, it seems to indicate a role of these complexes for PSI in excitation quenching and for PSII in turnover.
Collapse
Affiliation(s)
- Aleksandra Urban
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Paweł Rogowski
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Wioleta Wasilewska-Dębowska
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland
| | - Elżbieta Romanowska
- Department of Molecular Plant Physiology, Institute of Environmental Biology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02096 Warsaw, Poland.
| |
Collapse
|
10
|
Aliyeva NK, Aliyeva DR, Suleymanov SY, Rzayev FH, Gasimov EK, Huseynova IM. Biochemical properties and ultrastructure of mesophyll and bundle sheath thylakoids from maize (Zea mays) chloroplasts. FUNCTIONAL PLANT BIOLOGY : FPB 2020; 47:970-976. [PMID: 32574552 DOI: 10.1071/fp20004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 04/11/2020] [Indexed: 06/11/2023]
Abstract
A characteristic feature of C4 plants is the differentiation of the photosynthetic leaf tissues into two distinct cell types: mesophyll (M) and bundle sheath (BS) cells. We have investigated several biochemical parameters, including pigment composition, polypeptide patterns, fluorescence at 77K, the activity of photosystems and ultrastructure of mesophyll and bundle sheath chloroplasts of maize (Zea mays L.) plants. It is shown that the BS chloroplasts have ~2-fold higher chlorophyll a/b ratio than M chloroplasts, 6.15 and 3.12 respectively. The PSI apoprotein (68 kDa) was more abundant in BS than in M thylakoids. Polypeptides belonging to PSII core antenna, are in similar amounts in both types of membranes, but the 45kDa band is more intensive in M thylakoids. Polypeptides in the region of 28-24 kDa of the light-harvesting complex of PSII (LHCII) are also present in both types of chloroplasts, though their amounts are reduced in BS thylakoids. The chlorophyll fluorescence emission spectra in M cells showed the presence of three bands at 686, 695 and 735 nm characteristics of LHCII, PSII core and PSI complexes, respectively. However, in the fluorescence spectrum of agranal plastids, there are almost traces of the band at 695 nm, which belongs to the PSII core complex. The research results revealed that the photochemical activity of PSII in BS chloroplasts is ~5 times less than in the chloroplasts of M cells. The highest PSI activity was found in maize BS chloroplasts.
Collapse
Affiliation(s)
- Nahida K Aliyeva
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev Str, Baku AZ1073, Azerbaijan
| | - Durna R Aliyeva
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev Str, Baku AZ1073, Azerbaijan
| | - Saftar Y Suleymanov
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev Str, Baku AZ1073, Azerbaijan
| | - Fuad H Rzayev
- Laboratory of Electron Microscopy of the SRC of Azerbaijan Medical University, 163 A Samad Vurgun, Baku AZ1078, Azerbaijan
| | - Eldar K Gasimov
- Department of Histology, Embryology and Cytology, Azerbaijan Medical University, 163 A Samad Vurgun, Baku AZ1078, Azerbaijan
| | - Irada M Huseynova
- Institute of Molecular Biology and Biotechnologies, Azerbaijan National Academy of Sciences, 11 Izzat Nabiyev Str, Baku AZ1073, Azerbaijan; and Corresponding author.
| |
Collapse
|
11
|
Petrova EV, Kukarskikh GP, Krendeleva TE, Antal TK. The Mechanisms and Role of Photosynthetic Hydrogen Production by Green Microalgae. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720030169] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
|
12
|
Sagun JV, Badger MR, Chow WS, Ghannoum O. Cyclic electron flow and light partitioning between the two photosystems in leaves of plants with different functional types. PHOTOSYNTHESIS RESEARCH 2019; 142:321-334. [PMID: 31520186 PMCID: PMC6874625 DOI: 10.1007/s11120-019-00666-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 08/26/2019] [Indexed: 05/05/2023]
Abstract
Cyclic electron flow (CEF) around photosystem I (PSI) is essential for generating additional ATP and enhancing efficient photosynthesis. Accurate estimation of CEF requires knowledge of the fractions of absorbed light by PSI (fI) and PSII (fII), which are only known for a few model species such as spinach. No measures of fI are available for C4 grasses under different irradiances. We developed a new method to estimate (1) fII in vivo by concurrently measuring linear electron flux through both photosystems [Formula: see text] in leaf using membrane inlet mass spectrometry (MIMS) and total electron flux through PSII (ETR2) using chlorophyll fluorescence by a Dual-PAM at low light and (2) CEF as ETR1-[Formula: see text]. For a C3 grass, fI was 0.5 and 0.4 under control (high light) and shade conditions, respectively. C4 species belonging to NADP-ME and NAD-ME subtypes had fI of 0.6 and PCK subtype had 0.5 under control. All shade-grown C4 species had fI of 0.6 except for NADP-ME grass which had 0.7. It was also observed that fI ranged between 0.3 and 0.5 for gymnosperm, liverwort and fern species. CEF increased with irradiance and was induced at lower irradiances in C4 grasses and fern relative to other species. CEF was greater in shade-grown plants relative to control plants except for C4 NADP-ME species. Our study reveals a range of CEF and fI values in different plant functional groups. This variation must be taken into account for improved photosynthetic calculations and modelling.
Collapse
Affiliation(s)
- Julius Ver Sagun
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Locked Bag 1797, Penrith, NSW 2751 Australia
| | - Murray R. Badger
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT 2601 Australia
| | - Wah Soon Chow
- ARC Centre of Excellence for Translational Photosynthesis, Research School of Biology, Australian National University, Canberra, ACT 2601 Australia
| | - Oula Ghannoum
- ARC Centre of Excellence for Translational Photosynthesis, Hawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Locked Bag 1797, Penrith, NSW 2751 Australia
| |
Collapse
|
13
|
Yabiku T, Ueno O. Structural and photosynthetic re-acclimation to low light in C4 maize leaves that developed under high light. ANNALS OF BOTANY 2019; 124:437-445. [PMID: 31127287 PMCID: PMC6798838 DOI: 10.1093/aob/mcz092] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 05/23/2019] [Indexed: 05/26/2023]
Abstract
BACKGROUND AND AIMS C4 plants have higher photosynthetic capacity than C3 plants, but this advantage comes at an energetic cost that is problematic under low light. In the crop canopy, lower leaves first develop under high light but later experience low light because of mutual shading. To explore the re-acclimation of C4 leaves to low light, we investigated the structural and physiological changes of the leaves of maize plants grown in shaded pots. METHODS Plants were first grown under high light, and then some of them were shaded (20 % of sunlight) for 3 weeks. Four types of leaves were examined: new leaves that developed under low light during shading (L), new leaves that developed under high light (H), mature leaves that developed under high light before shading and were then subjected to low light (H-L) and mature leaves that always experienced high light (H-H). KEY RESULTS The leaf mass per area, nitrogen and chlorophyll contents per unit leaf area, chlorophyll a/b ratio and activities of C3 and C4 photosynthetic enzymes were lower in H-L than in H-H leaves and in L than in H leaves. Unlike L leaves, H-L leaves maintained the thickness and framework of the Kranz anatomy of H leaves, but chloroplast contents in H-L leaves were reduced. This reduction of chloroplast contents was achieved mainly by reducing the size of chloroplasts. Although grana of mesophyll chloroplasts were more developed in L leaves than in H leaves, there were no differences between H-L and H-H leaves. The light curves of photosynthesis in H-L and L leaves were very similar and showed traits of shade leaves. CONCLUSIONS Mature maize leaves that developed under high light re-acclimate to low-light environments by adjusting their biochemical traits and chloroplast contents to resemble shade leaves but maintain the anatomical framework of sun leaves.
Collapse
Affiliation(s)
- Takayuki Yabiku
- Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan
- NARO Tohoku Agricultural Research Center, Shimokuriyagawa, Morioka, Iwate, Japan
| | - Osamu Ueno
- Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Nishi-ku, Fukuoka, Japan
- Faculty of Agriculture, Kyushu University, Nishi-ku, Fukuoka, Japan
| |
Collapse
|
14
|
In Situ Hyperspectral Remote Sensing for Monitoring of Alpine Trampled and Recultivated Species. REMOTE SENSING 2019. [DOI: 10.3390/rs11111296] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Vegetation, through its condition, reflects the properties of the environment. Heterogeneous alpine ecosystems play a critical role in global monitoring systems, but due to low accessibility, cloudy conditions, and short vegetation periods, standard monitoring methods cannot be applied comprehensively. Hyperspectral tools offer a variety of methods based on narrow-band data, but before extrapolation to an airborne or satellite scale, they must be verified using plant biometrical variables. This study aims to assess the condition of alpine sward dominant species (Agrostis rupestris, Festuca picta, and Luzula alpino-pilosa) of the UNESCO Man&Biosphere Tatra National Park (TPN) where the high mountain grasslands are strongly influenced by tourists. Data were analyzed for trampled, reference, and recultivated polygons. The field-obtained hyperspectral properties were verified using ground measured photosynthetically active radiation, chlorophyll content, fluorescence, and evapotranspiration. Statistically significant changes in terms of cellular structures, chlorophyll, and water content in the canopy were detected. Lower values for the remote sensing indices were observed for trampled plants (about 10–15%). Species in recultivated areas were characterized by a similar, or sometimes improved, spectral properties than the reference polygons; confirmed by fluorescence measurements (Fv/Fm). Overall, the fluorescence analysis and remote sensing tools confirmed the suitability of such methods for monitoring species in remote mountain areas, and the general condition of these grasslands was determined as good.
Collapse
|
15
|
Romanowska E, Buczyńska A, Wasilewska W, Krupnik T, Drożak A, Rogowski P, Parys E, Zienkiewicz M. Differences in photosynthetic responses of NADP-ME type C4 species to high light. PLANTA 2017; 245:641-657. [PMID: 27990574 PMCID: PMC5310562 DOI: 10.1007/s00425-016-2632-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 09/20/2016] [Indexed: 05/22/2023]
Abstract
MAIN CONCLUSION Three species chosen as representatives of NADP-ME C4 subtype exhibit different sensitivity toward photoinhibition, and great photochemical differences were found to exist between the species. These characteristics might be due to the imbalance in the excitation energy between the photosystems present in M and BS cells, and also due to that between species caused by the penetration of light inside the leaves. Such regulation in the distribution of light intensity between M and BS cells shows that co-operation between both the metabolic systems determines effective photosynthesis and reduces the harmful effects of high light on the degradation of PSII through the production of reactive oxygen species (ROS). We have investigated several physiological parameters of NADP-ME-type C4 species (e.g., Zea mays, Echinochloa crus-galli, and Digitaria sanguinalis) grown under moderate light intensity (200 µmol photons m-2 s-1) and, subsequently, exposed to excess light intensity (HL, 1600 µmol photons m-2 s-1). Our main interest was to understand why these species, grown under identical conditions, differ in their responses toward high light, and what is the physiological significance of these differences. Among the investigated species, Echinochloa crus-galli is best adapted to HL treatment. High resistance of the photosynthetic apparatus of E. crus-galli to HL was accompanied by an elevated level of phosphorylation of PSII proteins, and higher values of photochemical quenching, ATP/ADP ratio, activity of PSI and PSII complexes, as well as integrity of the thylakoid membranes. It was also shown that the non-radiative dissipation of energy in the studied plants was not dependent on carotenoid contents and, thus, other photoprotective mechanisms might have been engaged under HL stress conditions. The activity of the enzymes superoxide dismutase and ascorbate peroxidase as well as the content of malondialdehyde and H2O2 suggests that antioxidant defense is not responsible for the differences observed in the tolerance of NADP-ME species toward HL stress. We concluded that the chloroplasts of the examined NADP-ME species showed different sensitivity to short-term high light irradiance, suggesting a role of other factors excluding light factors, thus influencing the response of thylakoid proteins. We also observed that HL affects the mesophyll chloroplasts first hand and, subsequently, the bundle sheath chloroplasts.
Collapse
Affiliation(s)
- Elżbieta Romanowska
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland.
| | - Alicja Buczyńska
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Wioleta Wasilewska
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Tomasz Krupnik
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Anna Drożak
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Paweł Rogowski
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Eugeniusz Parys
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Maksymilian Zienkiewicz
- Department of Molecular Plant Physiology, Faculty of BiologyUniversity of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| |
Collapse
|
16
|
Mlinarić S, Antunović Dunić J, Skendrović Babojelić M, Cesar V, Lepeduš H. Differential accumulation of photosynthetic proteins regulates diurnal photochemical adjustments of PSII in common fig (Ficus carica L.) leaves. JOURNAL OF PLANT PHYSIOLOGY 2017; 209:1-10. [PMID: 27987432 DOI: 10.1016/j.jplph.2016.12.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Revised: 12/05/2016] [Accepted: 12/07/2016] [Indexed: 05/27/2023]
Abstract
Molecular processes involved in photosystem II adaptation of woody species to diurnal changes in light and temperature conditions are still not well understood. Regarding this, here we investigated differences between young and mature leaves of common fig (Ficus carica L.) in photosynthetic performance as well as accumulation of the main photosynthetic proteins: light harvesting complex II, D1 protein and Rubisco large subunit. Investigated leaf types revealed different adjustment mechanisms to keep effective photosynthesis. Rather stable diurnal accumulation of light harvesting complex II in mature leaves enabled efficient excitation energy utilization (negative L-band) what triggered faster D1 protein degradation at high light. However, after photoinhibition, greater accumulation of D1 during the night enabled them faster recovery. So, the most photosynthetic parameters, as the maximum quantum yield for primary photochemistry, electron transport and overall photosynthetic efficiency in mature leaves successfully restored to their initial values at 1a.m. Reduced connectivity of light harvesting complexes II to its reaction centers (positive L-band) in young leaves increased dissipation of excess light causing less pressure to D1 and its slower degradation. Decreased electron transport in young leaves, due to reduced transfer beyond primary acceptor QA- most probably additionally induced degradation of Rubisco large subunit what consequently led to the stronger decrease of overall photosynthetic efficiency in young leaves at noon.
Collapse
Affiliation(s)
- Selma Mlinarić
- Josip Juraj Strossmayer University of Osijek, Department of Biology, Ulica cara Hadrijana 8/A, HR-31000 Osijek, Croatia.
| | - Jasenka Antunović Dunić
- Josip Juraj Strossmayer University of Osijek, Department of Biology, Ulica cara Hadrijana 8/A, HR-31000 Osijek, Croatia.
| | | | - Vera Cesar
- Josip Juraj Strossmayer University of Osijek, Department of Biology, Ulica cara Hadrijana 8/A, HR-31000 Osijek, Croatia.
| | - Hrvoje Lepeduš
- Faculty of Humanities and Social Sciences, Josip Juraj Strossmayer University of Osijek, L. Jägera 9, HR-31000 Osijek, Croatia.
| |
Collapse
|
17
|
Arrivault S, Obata T, Szecówka M, Mengin V, Guenther M, Hoehne M, Fernie AR, Stitt M. Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:283-298. [PMID: 27834209 PMCID: PMC5853532 DOI: 10.1093/jxb/erw414] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Accepted: 10/18/2016] [Indexed: 05/17/2023]
Abstract
Worldwide efforts to engineer C4 photosynthesis into C3 crops require a deep understanding of how this complex pathway operates. CO2 is incorporated into four-carbon metabolites in the mesophyll, which move to the bundle sheath where they are decarboxylated to concentrate CO2 around RuBisCO. We performed dynamic 13CO2 labeling in maize to analyze C flow in C4 photosynthesis. The overall labeling kinetics reflected the topology of C4 photosynthesis. Analyses of cell-specific labeling patterns after fractionation to enrich bundle sheath and mesophyll cells revealed concentration gradients to drive intercellular diffusion of malate, but not pyruvate, in the major CO2-concentrating shuttle. They also revealed intercellular concentration gradients of aspartate, alanine, and phosphenolpyruvate to drive a second phosphoenolpyruvate carboxykinase (PEPCK)-type shuttle, which carries 10-14% of the carbon into the bundle sheath. Gradients also exist to drive intercellular exchange of 3-phosphoglycerate and triose-phosphate. There is rapid carbon exchange between the Calvin-Benson cycle and the CO2-concentrating shuttle, equivalent to ~10% of carbon gain. In contrast, very little C leaks from the large pools of metabolites in the C concentration shuttle into respiratory metabolism. We postulate that the presence of multiple shuttles, alongside carbon transfer between them and the Calvin-Benson cycle, confers great flexibility in C4 photosynthesis.
Collapse
Affiliation(s)
- Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Toshihiro Obata
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Marek Szecówka
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Virginie Mengin
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Manuela Guenther
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Melanie Hoehne
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| |
Collapse
|
18
|
Zienkiewicz M, Drożak A, Wasilewska W, Bacławska I, Przedpełska-Wąsowicz E, Romanowska E. The short-term response of Arabidopsis thaliana (C3) and Zea mays (C4) chloroplasts to red and far red light. PLANTA 2015; 242:1479-93. [PMID: 26318309 DOI: 10.1007/s00425-015-2392-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Accepted: 08/24/2015] [Indexed: 05/05/2023]
Abstract
Light quality has various effects on photochemistry and protein phosphorylation in Zea mays and Arabidopsis thaliana thylakoids due to different degrees of light penetration across leaves and redox status in chloroplasts. The effect of the spectral quality of light (red, R and far red, FR) on the function of thylakoid proteins in Zea mays and Arabidopsis thaliana was investigated. It was concluded that red light stimulates PSII activity in A. thaliana thylakoids and in maize bundle sheath (BS) thylakoids, but not in mesophyll (M) thylakoids. The light quality did not change PSI activity in M thylakoids of maize. FR used after a white light period increased PSI activity significantly in maize BS and only slightly in A. thaliana thylakoids. As shown by blue native (BN)-PAGE followed by SDS-PAGE, proteins were differently phosphorylated in the thylakoids, indicating their different functions. FR light increased dephosphorylation of LHCII proteins in A. thaliana thylakoids, whereas in maize, dephosphorylation did not occur at all. The rate of phosphorylation was higher in maize BS than in M thylakoids. D1 protein phosphorylation increased in maize and decreased in A. thaliana upon irradiation with both R and growth light (white light, W). Light variations did not change the level of proteins in thylakoids. Our data strongly suggest that response to light quality is a species-dependent phenomenon. We concluded that the maize chloroplasts were differently stimulated, probably due to different degrees of light penetration across the leaf and thereby the redox status in the chloroplasts. These acclimation changes induced by light quality are important in the regulation of chloroplast membrane flexibility and thus its function.
Collapse
Affiliation(s)
- Maksymilian Zienkiewicz
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Anna Drożak
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Wioleta Wasilewska
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Ilona Bacławska
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Ewa Przedpełska-Wąsowicz
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland
| | - Elżbieta Romanowska
- Department of Molecular Plant Physiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland.
| |
Collapse
|
19
|
Seaver SMD, Bradbury LMT, Frelin O, Zarecki R, Ruppin E, Hanson AD, Henry CS. Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm. FRONTIERS IN PLANT SCIENCE 2015; 6:142. [PMID: 25806041 PMCID: PMC4354304 DOI: 10.3389/fpls.2015.00142] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 02/22/2015] [Indexed: 05/08/2023]
Abstract
There is a growing demand for genome-scale metabolic reconstructions for plants, fueled by the need to understand the metabolic basis of crop yield and by progress in genome and transcriptome sequencing. Methods are also required to enable the interpretation of plant transcriptome data to study how cellular metabolic activity varies under different growth conditions or even within different organs, tissues, and developmental stages. Such methods depend extensively on the accuracy with which genes have been mapped to the biochemical reactions in the plant metabolic pathways. Errors in these mappings lead to metabolic reconstructions with an inflated number of reactions and possible generation of unreliable metabolic phenotype predictions. Here we introduce a new evidence-based genome-scale metabolic reconstruction of maize, with significant improvements in the quality of the gene-reaction associations included within our model. We also present a new approach for applying our model to predict active metabolic genes based on transcriptome data. This method includes a minimal set of reactions associated with low expression genes to enable activity of a maximum number of reactions associated with high expression genes. We apply this method to construct an organ-specific model for the maize leaf, and tissue specific models for maize embryo and endosperm cells. We validate our models using fluxomics data for the endosperm and embryo, demonstrating an improved capacity of our models to fit the available fluxomics data. All models are publicly available via the DOE Systems Biology Knowledgebase and PlantSEED, and our new method is generally applicable for analysis transcript profiles from any plant, paving the way for further in silico studies with a wide variety of plant genomes.
Collapse
Affiliation(s)
- Samuel M. D. Seaver
- Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL, USA
- Computation Institute, The University of ChicagoChicago, IL, USA
| | - Louis M. T. Bradbury
- Horticultural Sciences Department, University of FloridaGainesville, FL, USA
- Department of Biology, York College, City University of New YorkNew York, NY, USA
| | - Océane Frelin
- Horticultural Sciences Department, University of FloridaGainesville, FL, USA
| | - Raphy Zarecki
- Sackler Faculty of Medicine, Tel Aviv UniversityTel Aviv, Israel
| | - Eytan Ruppin
- Sackler Faculty of Medicine, Tel Aviv UniversityTel Aviv, Israel
| | - Andrew D. Hanson
- Horticultural Sciences Department, University of FloridaGainesville, FL, USA
| | - Christopher S. Henry
- Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL, USA
- Computation Institute, The University of ChicagoChicago, IL, USA
- *Correspondence: Christopher S. Henry, Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL 60439, USA
| |
Collapse
|
20
|
Parys E, Wasilewska W, Siedlecka M, Zienkiewicz M, Drożak A, Romanowska E. Metabolic responses to lead of metallicolous and nonmetallicolous populations of Armeria maritima. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2014; 67:565-77. [PMID: 25070267 DOI: 10.1007/s00244-014-0057-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2014] [Accepted: 05/26/2014] [Indexed: 05/05/2023]
Abstract
Metabolic responses to Pb(NO₃)₂ (Pb) ions of excised leaves of metallicolous (MPs) and nonmetallicolous populations (NMPs) of Armeria maritima, cultivated on normal soil, were examined. Detached leaves were exposure to Pb for 24 h, and metabolic parameters were investigated. Pb decreased the photosynthesis (Pn) rate and photosystem II (PSII) activity, whereas the photochemical efficiency of PSII remained unchanged. In both populations, Pb ions caused increase in O₂ uptake of dark-treated leaves; however, respiration after Pn was not affected. Pb increased superoxide dismutase activity in MP leaves and malondialdehyde content in NMP leaves. Other metabolites after Pb treatment were increased (proline or H₂O₂) or decreased (malate). Ascorbate peroxidase activity and adenosine triphosphate content decreased more in MP than in NMP leaves. Our results indicate that A. maritima is well adapted to heavy metal-contaminated soils, and we discuss potential causes of the stimulation of respiration by Pb ions and possible reasons for the tolerance to oxidative stress of plants growing in a metal-rich habitat.
Collapse
Affiliation(s)
- Eugeniusz Parys
- Department of Molecular Plant Physiology, Faculty of Biology, Warsaw University, Miecznikowa 1, 02 096, Warsaw, Poland
| | | | | | | | | | | |
Collapse
|
21
|
Hirth M, Dietzel L, Steiner S, Ludwig R, Weidenbach H, and JP, Pfannschmidt T. Photosynthetic acclimation responses of maize seedlings grown under artificial laboratory light gradients mimicking natural canopy conditions. FRONTIERS IN PLANT SCIENCE 2013; 4:334. [PMID: 24062753 PMCID: PMC3770919 DOI: 10.3389/fpls.2013.00334] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2013] [Accepted: 08/08/2013] [Indexed: 05/20/2023]
Abstract
In this study we assessed the ability of the C4 plant maize to perform long-term photosynthetic acclimation in an artificial light quality system previously used for analyzing short-term and long-term acclimation responses (LTR) in C3 plants. We aimed to test if this light system could be used as a tool for analyzing redox-regulated acclimation processes in maize seedlings. Photosynthetic parameters obtained from maize samples harvested in the field were used as control. The results indicated that field grown maize performed a pronounced LTR with significant differences between the top and the bottom levels of the plant stand corresponding to the strong light gradients occurring in it. We compared these data to results obtained from maize seedlings grown under artificial light sources preferentially exciting either photosystem II or photosystem I. In C3 plants, this light system induces redox signals within the photosynthetic electron transport chain which trigger state transitions and differential phosphorylation of LHCII (light harvesting complexes of photosystem II). The LTR to these redox signals induces changes in the accumulation of plastid psaA transcripts, in chlorophyll (Chl) fluorescence values F \rm s/F \rm m, in Chl a/b ratios and in transient starch accumulation in C3 plants. Maize seedlings grown in this light system exhibited a pronounced ability to perform both short-term and long-term acclimation at the level of psaA transcripts, Chl fluorescence values F \rm s/F \rm m and Chl a/b ratios. Interestingly, maize seedlings did not exhibit redox-controlled variations of starch accumulation probably because of its specific differences in energy metabolism. In summary, the artificial laboratory light system was found to be well-suited to mimic field light conditions and provides a physiological tool for studying the molecular regulation of the LTR of maize in more detail.
Collapse
Affiliation(s)
- Matthias Hirth
- Present address: Matthias Hirth, Institut für Allgemeine Botanik und Pflanzenphysiologie, Professur für Molekulare Botanik, Friedrich-Schiller-Universität Jena, Dornburger Straße 159, Jena 07743, Germany; Lars Dietzel, Institut für Molekulare Biowissenschaften, Pflanzliche Zellphysiologie, Biozentrum Goethe-Universität Frankfurt, Max-von-Laue-Straße 9, Frankfurt am Main 60438, Germany; Sebastian Steiner, Klein Wanzlebener Saatzucht Saat AG, Grimsehlstraße 31, Einbeck 37574, Germany; Robert Ludwig, Institut für Diagnostische und Interventionelle Radiologie I — AG Experimentelle Radiologie, Universitätsklinikum Jena — Friedrich-Schiller Universität Jena, Erlanger Allee 101, Jena 07747, Germany; Thomas Pfannschmidt, Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, 17 rue des Martyrs, Grenoble F-38054, France
| | - Lars Dietzel
- Present address: Matthias Hirth, Institut für Allgemeine Botanik und Pflanzenphysiologie, Professur für Molekulare Botanik, Friedrich-Schiller-Universität Jena, Dornburger Straße 159, Jena 07743, Germany; Lars Dietzel, Institut für Molekulare Biowissenschaften, Pflanzliche Zellphysiologie, Biozentrum Goethe-Universität Frankfurt, Max-von-Laue-Straße 9, Frankfurt am Main 60438, Germany; Sebastian Steiner, Klein Wanzlebener Saatzucht Saat AG, Grimsehlstraße 31, Einbeck 37574, Germany; Robert Ludwig, Institut für Diagnostische und Interventionelle Radiologie I — AG Experimentelle Radiologie, Universitätsklinikum Jena — Friedrich-Schiller Universität Jena, Erlanger Allee 101, Jena 07747, Germany; Thomas Pfannschmidt, Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, 17 rue des Martyrs, Grenoble F-38054, France
| | - Sebastian Steiner
- Present address: Matthias Hirth, Institut für Allgemeine Botanik und Pflanzenphysiologie, Professur für Molekulare Botanik, Friedrich-Schiller-Universität Jena, Dornburger Straße 159, Jena 07743, Germany; Lars Dietzel, Institut für Molekulare Biowissenschaften, Pflanzliche Zellphysiologie, Biozentrum Goethe-Universität Frankfurt, Max-von-Laue-Straße 9, Frankfurt am Main 60438, Germany; Sebastian Steiner, Klein Wanzlebener Saatzucht Saat AG, Grimsehlstraße 31, Einbeck 37574, Germany; Robert Ludwig, Institut für Diagnostische und Interventionelle Radiologie I — AG Experimentelle Radiologie, Universitätsklinikum Jena — Friedrich-Schiller Universität Jena, Erlanger Allee 101, Jena 07747, Germany; Thomas Pfannschmidt, Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, 17 rue des Martyrs, Grenoble F-38054, France
| | - Robert Ludwig
- Present address: Matthias Hirth, Institut für Allgemeine Botanik und Pflanzenphysiologie, Professur für Molekulare Botanik, Friedrich-Schiller-Universität Jena, Dornburger Straße 159, Jena 07743, Germany; Lars Dietzel, Institut für Molekulare Biowissenschaften, Pflanzliche Zellphysiologie, Biozentrum Goethe-Universität Frankfurt, Max-von-Laue-Straße 9, Frankfurt am Main 60438, Germany; Sebastian Steiner, Klein Wanzlebener Saatzucht Saat AG, Grimsehlstraße 31, Einbeck 37574, Germany; Robert Ludwig, Institut für Diagnostische und Interventionelle Radiologie I — AG Experimentelle Radiologie, Universitätsklinikum Jena — Friedrich-Schiller Universität Jena, Erlanger Allee 101, Jena 07747, Germany; Thomas Pfannschmidt, Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, 17 rue des Martyrs, Grenoble F-38054, France
| | | | | | - Thomas Pfannschmidt
- *Correspondence: Thomas Pfannschmidt, Laboratoire de Physiologie Cellulaire & Végétale, Univ. Grenoble Alpes, 17 rue des Martyrs, F-38054 Grenoble, France e-mail:
| |
Collapse
|
22
|
Kromdijk J, Griffiths H, Schepers HE. Can the progressive increase of C₄ bundle sheath leakiness at low PFD be explained by incomplete suppression of photorespiration? PLANT, CELL & ENVIRONMENT 2010; 33:1935-1948. [PMID: 20561250 DOI: 10.1111/j.1365-3040.2010.02196.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The ability to concentrate CO₂ around Rubisco allows C₄ crops to suppress photorespiration. However, as phosphoenolpyruvate regeneration requires ATP, the energetic efficiency of the C₄ pathway at low photosynthetic flux densities (PFD) becomes a balancing act between primary fixation and concentration of CO₂ in mesophyll (M) cells, and CO₂ reduction in bundle sheath (BS) cells. At low PFD, retro-diffusion of CO₂ from BS cells, relative to the rate of bicarbonate fixation in M cells (termed leakiness φ), is known to increase. This paper investigates whether this increase in ϕ could be explained by incomplete inhibition of photorespiration. The PFD response of φ was measured at various O₂ partial pressures in young Zea mays plants grown at 250 (LL) and 750 µmol m⁻² s⁻¹ PFD (HL). φ increased at low PFD and was positively correlated with O₂ partial pressure. Low PFD during growth caused BS conductance and interveinal distance to be lower in the LL plants, compared to the HL plants, which correlated with lower φ. Model analysis showed that incomplete inhibition of photorespiration, especially in the HL plants, and an increase in the relative contribution of mitochondrial respiration at low PFD could explain the observed increases in φ.
Collapse
Affiliation(s)
- Johannes Kromdijk
- Physiological Ecology, Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB23EA, UK.
| | | | | |
Collapse
|
23
|
Chapter 8 Nitrogen and Water Use Efficiency of C4 Plants. C4 PHOTOSYNTHESIS AND RELATED CO2 CONCENTRATING MECHANISMS 2010. [DOI: 10.1007/978-90-481-9407-0_8] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
|
24
|
Pokorska B, Zienkiewicz M, Powikrowska M, Drozak A, Romanowska E. Differential turnover of the photosystem II reaction centre D1 protein in mesophyll and bundle sheath chloroplasts of maize. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2009; 1787:1161-9. [PMID: 19450540 DOI: 10.1016/j.bbabio.2009.05.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2008] [Revised: 05/04/2009] [Accepted: 05/11/2009] [Indexed: 01/01/2023]
Abstract
Photoinhibition is caused by an imbalance between the rates of the damage and repair cycle of photosystem II D1 protein in thylakoid membranes. The PSII repair processes include (i) disassembly of damaged PSII-LHCII supercomplexes and PSII core dimers into monomers, (ii) migration of the PSII monomers to the stroma regions of thylakoid membranes, (iii) dephosphorylation of the CP43, D1 and D2 subunits, (iv) degradation of damaged D1 protein, and (v) co-translational insertion of the newly synthesized D1 polypeptide and reassembly of functional PSII complex. Here, we studied the D1 turnover cycle in maize mesophyll and bundle sheath chloroplasts using a protein synthesis inhibitor, lincomycin. In both types of maize chloroplasts, PSII was found as the PSII-LHCII supercomplex, dimer and monomer. The PSII core and the LHCII proteins were phosphorylated in both types of chloroplasts in a light-dependent manner. The rate constants for photoinhibition measured for lincomycin-treated leaves were comparable to those reported for C3 plants, suggesting that the kinetics of the PSII photodamage is similar in C3 and C4 species. During the photoinhibitory treatment the D1 protein was dephosphorylated in both types of chloroplasts but it was rapidly degraded only in the bundle sheath chloroplasts. In mesophyll chloroplasts, PSII monomers accumulated and little degradation of D1 protein was observed. We postulate that the low content of the Deg1 enzyme observed in mesophyll chloroplasts isolated from moderate light grown maize may retard the D1 repair processes in this type of plastids.
Collapse
Affiliation(s)
- Berenika Pokorska
- University of Warsaw, Department of Plant Physiology, Warsaw, Poland
| | | | | | | | | |
Collapse
|
25
|
Abstract
Despite recent elucidation of the three-dimensional structure of major photosynthetic complexes, our understanding of light energy conversion in plant chloroplasts and microalgae under physiological conditions requires exploring the dynamics of photosynthesis. The photosynthetic apparatus is a flexible molecular machine that can acclimate to metabolic and light fluctuations in a matter of seconds and minutes. On a longer time scale, changes in environmental cues trigger acclimation responses that elicit intracellular signaling between the nucleo-cytosol and chloroplast resulting in modification of the biogenesis of the photosynthetic machinery. Here we attempt to integrate well-established knowledge on the functional flexibility of light-harvesting and electron transfer processes, which has greatly benefited from genetic approaches, with data derived from the wealth of recent transcriptomic and proteomic studies of acclimation responses in photosynthetic eukaroytes.
Collapse
Affiliation(s)
- Stephan Eberhard
- Université Pierre et Marie Curie, Institut de Biologie Physico-Chimique, F-75005 Paris, France
| | | | | |
Collapse
|
26
|
Romanowska E, Kargul J, Powikrowska M, Finazzi G, Nield J, Drozak A, Pokorska B. Structural organization of photosynthetic apparatus in agranal chloroplasts of maize. J Biol Chem 2008; 283:26037-46. [PMID: 18632664 PMCID: PMC3258860 DOI: 10.1074/jbc.m803711200] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2008] [Revised: 07/14/2008] [Indexed: 11/06/2022] Open
Abstract
We investigated the organization of photosystem II (PSII) in agranal bundle sheath thylakoids from a C(4) plant maize. Using blue native/SDS-PAGE and single particle analysis, we show for the first time that PSII in the bundle sheath (BS) chloroplasts exists in a dimeric form and forms light-harvesting complex II (LHCII).PSII supercomplexes. We also demonstrate that a similar set of photosynthetic membrane complexes exists in mesophyll and agranal BS chloroplasts, including intact LHCI.PSI supercomplexes, PSI monomers, PSII core dimers, PSII monomers devoid of CP43, LHCII trimers, LHCII monomers, ATP synthase, and cytochrome b(6)f complex. Fluorescence functional measurements clearly indicate that BS chloroplasts contain PSII complexes that are capable of performing charge separation and are efficiently sensitized by the associated LHCII. We identified a fraction of LHCII present within BS thylakoids that is weakly energetically coupled to the PSII reaction center; however, the majority of BS LHCII is shown to be tightly connected to PSII. Overall, we demonstrate that organization of the photosynthetic apparatus in BS agranal chloroplasts of a model C(4) plant is clearly distinct from that of the stroma lamellae of the C(3) plants. In particular, supramolecular organization of the dimeric LHCII.PSII in the BS thylakoids strongly suggests that PSII in the BS agranal membranes may donate electrons to PSI. We propose that the residual PSII activity may supply electrons to poise cyclic electron flow around PSI and prevent PSI overoxidation, which is essential for the CO(2) fixation in BS cells, and hence, may optimize ATP production within this compartment.
Collapse
Affiliation(s)
- Elzbieta Romanowska
- Department of Plant Physiology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland.
| | | | | | | | | | | | | |
Collapse
|
27
|
Pokorska B, Romanowska E. Photoinhibition and D1 protein degradation in mesophyll and agranal bundle sheath thylakoids of maize. FUNCTIONAL PLANT BIOLOGY : FPB 2007; 34:844-852. [PMID: 32689412 DOI: 10.1071/fp07067] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2007] [Accepted: 07/03/2007] [Indexed: 06/11/2023]
Abstract
Susceptibility of photosystem II complex (PSII) to photoinhibition and degradation of D1 protein has been described in the chloroplasts of C3 plants but so far, the PSII turnover has not been characterised in any C4 plant, which contains two types of chloroplasts differing biochemically and structurally. In maize (Zea mays L. Oleńka), chloroplasts located in mesophyll (M) develop grana, while bundle sheath (BS) chloroplasts are agranal. In this paper, we report the D1 protein phosphorylation, damage and proteolysis in mesophyll as well as in agranal bundle sheath thylakoids of maize plants. Photoinhibitory treatment (1800 μmol photons m-2 s-1) of isolated thylakoids led to donor side inhibition of PSII electron transport and then to damage of reaction centre in both M and BS thylakoids. Rate of D1 degradation rate was faster in BS than in M thylakoids, and the addition of ATP to incubation medium delayed D1 degradation in both types of thylakoids. Furthermore, we demonstrated that the proteases belonging to FtsH and Deg families were present but their amounts significantly differed in M and BS thylakoids. Protease inhibitor studies revealed that serine- and metallo-proteases were involved in degradation of D1 protein. Apparent existence of D1 degradation cycle and the presence of proteolytic enzymes responsible for this process in BS thylakoids confirm that PSII plays an important role in agranal membranes, and when damaged, D1 can be rapidly degraded to enable PSII repair and restoration in these membranes.
Collapse
Affiliation(s)
- Berenika Pokorska
- Department of Plant Physiology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| | - Elzbieta Romanowska
- Department of Plant Physiology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
| |
Collapse
|