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Talarico L, Clemente I, Gennari A, Gabbricci G, Pepi S, Leone G, Bonechi C, Rossi C, Mattioli SL, Detta N, Magnani A. Physiochemical Characterization of Lipidic Nanoformulations Encapsulating the Antifungal Drug Natamycin. NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:726. [PMID: 38668220 PMCID: PMC11053702 DOI: 10.3390/nano14080726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 04/09/2024] [Accepted: 04/17/2024] [Indexed: 04/29/2024]
Abstract
Natamycin is a tetraene polyene that exploits its antifungal properties by irreversibly binding components of fungal cell walls, blocking the growth of infections. However, topical ocular treatments with natamycin require frequent application due to the low ability of this molecule to permeate the ocular membrane. This limitation has limited the use of natamycin as an antimycotic drug, despite it being one of the most powerful known antimycotic agents. In this work, different lipidic nanoformulations consisting of transethosomes or lipid nanoparticles containing natamycin are proposed as carriers for optical topical administration. Size, stability and zeta potential were characterized via dynamic light scattering, the supramolecular structure was investigated via small- and wide-angle X-ray scattering and 1H-NMR, and the encapsulation efficiencies of the four proposed formulations were determined via HPLC-DAD.
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Affiliation(s)
- Luigi Talarico
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- National Interuniversity Consortium of Material Science and Technology (INSTM), Siena Research Unit, Via G. Giusti 9, 50121 Firenze, Italy
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Ilaria Clemente
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Alessandro Gennari
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
| | - Giulia Gabbricci
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Simone Pepi
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- National Interuniversity Consortium of Material Science and Technology (INSTM), Siena Research Unit, Via G. Giusti 9, 50121 Firenze, Italy
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Gemma Leone
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- National Interuniversity Consortium of Material Science and Technology (INSTM), Siena Research Unit, Via G. Giusti 9, 50121 Firenze, Italy
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Claudia Bonechi
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Claudio Rossi
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
| | - Simone Luca Mattioli
- Dompé Farmaceutici S.p.A, Via Campo di Pile SNC, 67100 L’Aquila, Italy; (S.L.M.); (N.D.)
| | - Nicola Detta
- Dompé Farmaceutici S.p.A, Via Campo di Pile SNC, 67100 L’Aquila, Italy; (S.L.M.); (N.D.)
| | - Agnese Magnani
- Department of Biotechnology Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy; (L.T.); (I.C.); (A.G.); (G.G.); (S.P.); (G.L.); (C.B.); (C.R.)
- National Interuniversity Consortium of Material Science and Technology (INSTM), Siena Research Unit, Via G. Giusti 9, 50121 Firenze, Italy
- Center for Colloids and Surface Science (CSGI), Siena Research Group, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy
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Kienlein M, Zacharias M, Reif MM. Comprehensive Analysis of Coupled Proline Cis-Trans States in Bradykinin Using ωBP-REMD Simulations. J Chem Theory Comput 2024; 20:2643-2654. [PMID: 38465868 DOI: 10.1021/acs.jctc.3c01356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
Abstract
It is well-known that proline (Pro) cis-trans isomerization plays a decisive role in the folding and stabilization of proteins. The conformational coupling between isomerization states of different Pro residues in proteins during conformational adaptation processes is not well understood. In the present work, we investigate the coupled cis-trans isomerization of three Pro residues using bradykinin (BK), a partially unstructured nonapeptide hormone, as a model system. We use a recently developed enhanced-sampling molecular dynamics method (ω-bias potential replica exchange molecular dynamics; ωBP-REMD) that allows us to exhaustively sample all combinations of Pro isomer states and obtain converged probability densities of all eight state combinations within 885 ns ωBP-REMD simulations. In agreement with experiment, the all-trans state is seen to be the preferred isomer of zwitterionic aqueous BK. In about a third of its structures, this state presents the characteristic C-terminal β-turn conformation; however, other isomer combinations also contribute significantly to the structural ensemble. Unbiased probabilities can be projected onto the peptide bond dihedral angles of the three Pro residues. This unveils the interdependence of the individual Pro isomerization states, i.e., a possible coupling of the different Pro isomers. The cis/trans equilibrium of a Pro residue can change by up to 2.5 kcal·mol-1, depending on the isomerization state of other Pro residues. For example, for Pro7, the simulations indicate that its cis state becomes favored compared to its trans state when Pro2 is switched from the trans state to the cis state. Our findings demonstrate the efficiency of the ωBP-REMD methodology and suggest that the coupling of Pro isomerization states may play an even more decisive role in larger folded proteins subject to more conformational restraints.
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Affiliation(s)
- Maximilian Kienlein
- Center for Functional Protein Assemblies (CPA), Physics Department, Chair of Theoretical Biophysics (T38), Technical University of Munich, Ernst-Otto-Fischer-Str. 8, 85748 Garching, Germany
| | - Martin Zacharias
- Center for Functional Protein Assemblies (CPA), Physics Department, Chair of Theoretical Biophysics (T38), Technical University of Munich, Ernst-Otto-Fischer-Str. 8, 85748 Garching, Germany
| | - Maria M Reif
- Center for Functional Protein Assemblies (CPA), Physics Department, Chair of Theoretical Biophysics (T38), Technical University of Munich, Ernst-Otto-Fischer-Str. 8, 85748 Garching, Germany
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Seetaloo N, Kish M, Phillips JJ. HDfleX: Software for Flexible High Structural Resolution of Hydrogen/Deuterium-Exchange Mass Spectrometry Data. Anal Chem 2022; 94:4557-4564. [PMID: 35263087 PMCID: PMC9204700 DOI: 10.1021/acs.analchem.1c05339] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
Hydrogen/deuterium-exchange
mass spectrometry (HDX-MS) experiments
on protein structures can be performed at three levels: (1) by enzymatically
digesting labeled proteins and analyzing the peptides (bottom-up),
(2) by further fragmenting peptides following digestion (middle-down),
and (3) by fragmenting the intact labeled protein (top-down) using
soft gas-phase fragmentation methods, such as electron transfer dissociation
(ETD). However, to the best of our knowledge, the software packages
currently available for the analysis of HDX-MS data do not enable
the peptide- and ETD-levels to be combined; they can only be analyzed
separately. Thus, we developed HDfleX, a standalone
application for the analysis of flexible high structural resolution
of HDX-MS data, which allows data at any level of structural resolution
(intact protein, peptide, fragment) to be merged. HDfleX features rapid experimental data fitting, robust statistical significance
analyses, and optional methods for theoretical intrinsic calculations
and a novel empirical correction for comparison between solution conditions.
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Affiliation(s)
- Neeleema Seetaloo
- Living Systems Institute, Department of Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, U.K
| | - Monika Kish
- Living Systems Institute, Department of Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, U.K
| | - Jonathan J Phillips
- Living Systems Institute, Department of Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, U.K.,Alan Turing Institute, British Library, London NW1 2DB, U.K
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Physicochemical Characterization of Hyaluronic Acid and Chitosan Liposome Coatings. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app112412071] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Hyaluronic acid (HA) and chitosan (CH) are biopolymers that are widely used in many biomedical applications and for cosmetic purposes. Their chemical properties are fundamental to them working as drug delivery systems and improving their synergistic effects. In this work, two different protocols were used to obtain zwitterionic liposomes coated with either hyaluronic acid or chitosan. Specifically, the methodologies used to perform vesicle preparation were chosen by taking into account the specific chemical properties of these two polysaccharides. In the case of chitosan, liposomes were first synthesized and then coated, whereas the coating of hyaluronic acid was achieved through lipidic film hydration in an HA aqueous solution. The size and the zeta-potential of the polysaccharide-coated liposomes were determined by dynamic light scattering (DLS). This approach allowed coated liposomes to be obtained with hydrodynamic diameters of 264.4 ± 12.5 and 450.3 ± 16.7 nm for HA- and CH-coated liposomes, respectively. The chemical characterization of the coated liposomal systems was obtained by surface infrared (ATR-FTIR) and nuclear magnetic resonance (NMR) spectroscopies. In particular, the presence of polysaccharides was confirmed by the bands assigned to amides and saccharides being in the 1500–1700 cm−1 and 800–1100 cm−1 regions, respectively. This approach allowed confirmation of the efficiency of the coating processes, evidencing the presence of HA or CH at the liposomal surface. These data were also supported by time-of-flight secondary ion mass spectrometry (ToF-SIMS), which provided specific assessments of surface (3–5 nm deep) composition and structure of the polysaccharide-coated liposomes. In this work, the synthesis and the physical chemistry characterization of coated liposomes with HA or CH represent an important step in improving the pharmacological properties of drug delivery systems.
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Lipids from algal biomass provide new (nonlamellar) nanovectors with high carrier potentiality for natural antioxidants. Eur J Pharm Biopharm 2020; 158:410-416. [PMID: 33271303 DOI: 10.1016/j.ejpb.2020.11.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 10/05/2020] [Accepted: 11/22/2020] [Indexed: 11/21/2022]
Abstract
Lipid mesophases are lyotropic liquid crystalline systems which differ from liposomes and other globular aggregates in dilute regimes due to their inner ordering. It is known that natural lipids enable to obtain a rich variety of nanosystems and many of them have been proposed as delivery agents for bioactive compounds. Due to their packing parameters, several classes of lipids found in natural sources are able to self-assemble into nonlamellar structures. Among lipids occurring in plants and algae, triglycerides display this tendency. In the present study we examine new nanosystems built with lipids extracted from the marine microalga Nannochloropsis sp and their use as carriers for lipophilic antioxidants. The antioxidants studied, curcumin and tocopherol were encapsulated with high rate in the carriers. The physico-chemical characterization of plain and loaded vectors showed their structure and localization site, as well as the structure-functionality relationship related to potential drug delivery. The results show that the cargo molecules play an active role in driving the interactions which characterize the overall structure of the aggregates. The systems studied showed several coexisting mesophases, the most predominant structure being of cubic symmetry.
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Pharmacological Effects of a Novel Bradykinin-Related Peptide (RR-18) from the Skin Secretion of the Hejiang Frog ( Ordorrana hejiangensis) on Smooth Muscle. Biomedicines 2020; 8:biomedicines8070225. [PMID: 32709165 PMCID: PMC7400415 DOI: 10.3390/biomedicines8070225] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 07/13/2020] [Accepted: 07/14/2020] [Indexed: 01/10/2023] Open
Abstract
Bradykinin (BK) and bradykinin-related peptides (BRPs), which were identified from a diversity of amphibian skin secretions, exerted contractile and relaxing effects on non-vascular and vascular smooth muscle, respectively. Here, we report a novel bradykinin-related peptide with a molecular mass of 1890.2 Da, RVAGPDKPARISGLSPLR, which was isolated and identified from Ordorrana hejiangensis skin secretions, followed by a C-terminal extension sequence VAPQIV. The biosynthetic precursor-encoding cDNA was cloned by the “shotgun” cloning method, and the novel RR-18 was identified and structurally confirmed by high-performance liquid chromatography (HPLC) and tandem mass spectrometry (MS/MS). Subsequently, the myotropic activity of the synthetic replicate of RR-18 was investigated on the rat bladder, uterus, tail artery and ileum smooth muscle. The peptide was named RR-18 in accordance (R = N-terminal arginine, R = C-terminal arginine, 18 = number of residues). In this study, the synthetic replicates of RR-18 showed no agonist/antagonism of BK-induced rat bladder and uterus smooth muscle contraction. However, it displayed an antagonism of bradykinin-induced rat ileum contraction and arterial smooth muscle relaxation. The EC50 values of BK for ileum and artery, were 214.7 nM and 18.3 nM, respectively. When the tissue was pretreated with the novel peptide, RR-18, at the maximally effective concentration of bradykinin (1 × 10−6 M), bradykinin-induced contraction of the ileum and relaxation of the arterial smooth muscle was reduced by 50–60% and 30–40%, respectively. In conclusion, RR-18 represents novel bradykinin antagonising peptide from amphibian skin secretions. It may provide new insight into possible treatment options for chronic pain and chronic inflammation.
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A Novel Bradykinin-Related Peptide, RVA-Thr 6-BK, from the Skin Secretion of the Hejiang Frog; Ordorrana hejiangensis: Effects of Mammalian Isolated Smooth Muscle. Toxins (Basel) 2019; 11:toxins11070376. [PMID: 31261655 PMCID: PMC6669471 DOI: 10.3390/toxins11070376] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 06/25/2019] [Accepted: 06/25/2019] [Indexed: 01/10/2023] Open
Abstract
A novel naturally-occurring bradykinin-related peptide (BRP) with an N-terminal extension, named RVA-Thr6-Bradykinin (RVA-Thr6-BK), was here isolated and identified from the cutaneous secretion of Odorrana hejiangensis (O. hejiangensis). Thereafter, in order to evaluate the difference in myotropic actions, a leucine site-substitution variant from Amolops wuyiensis skin secretion, RVA-Leu1, Thr6-BK, was chemically synthesized. Myotropic studies indicated that single-site arginine (R) replacement by leucine (L) at position-4 from the N-terminus, altered the action of RVA-Thr6-BK from an agonist to an antagonist of BK actions on rat ileum smooth muscle. Additionally, both BK N-terminal extended derivatives (RVA-Thr6-BK and RVA-Leu1, Thr6-BK) exerted identical myotropic actions to BK, such as increasing the frequency of contraction, contracting and relaxing the rat uterus, bladder and artery preparations, respectively.
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Della Giovampaola C, Capone A, Ermini L, Lupetti P, Vannuccini E, Finetti F, Donnini S, Ziche M, Magnani A, Leone G, Rossi C, Rosati F, Bonechi C. Formulation of liposomes functionalized with Lotus lectin and effective in targeting highly proliferative cells. Biochim Biophys Acta Gen Subj 2017; 1861:860-870. [DOI: 10.1016/j.bbagen.2017.01.015] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Revised: 12/21/2016] [Accepted: 01/13/2017] [Indexed: 12/20/2022]
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9
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Yang YI, Zhang J, Che X, Yang L, Gao YQ. Efficient sampling over rough energy landscapes with high barriers: A combination of metadynamics with integrated tempering sampling. J Chem Phys 2016; 144:094105. [PMID: 26957155 DOI: 10.1063/1.4943004] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
In order to efficiently overcome high free energy barriers embedded in a complex energy landscape and calculate overall thermodynamics properties using molecular dynamics simulations, we developed and implemented a sampling strategy by combining the metadynamics with (selective) integrated tempering sampling (ITS/SITS) method. The dominant local minima on the potential energy surface (PES) are partially exalted by accumulating history-dependent potentials as in metadynamics, and the sampling over the entire PES is further enhanced by ITS/SITS. With this hybrid method, the simulated system can be rapidly driven across the dominant barrier along selected collective coordinates. Then, ITS/SITS ensures a fast convergence of the sampling over the entire PES and an efficient calculation of the overall thermodynamic properties of the simulation system. To test the accuracy and efficiency of this method, we first benchmarked this method in the calculation of ϕ - ψ distribution of alanine dipeptide in explicit solvent. We further applied it to examine the design of template molecules for aromatic meta-C-H activation in solutions and investigate solution conformations of the nonapeptide Bradykinin involving slow cis-trans isomerizations of three proline residues.
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Affiliation(s)
- Y Isaac Yang
- Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Jun Zhang
- Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Xing Che
- Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Lijiang Yang
- Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Yi Qin Gao
- Institute of Theoretical and Computational Chemistry, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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Voronina L, Masson A, Kamrath M, Schubert F, Clemmer D, Baldauf C, Rizzo T. Conformations of Prolyl–Peptide Bonds in the Bradykinin 1–5 Fragment in Solution and in the Gas Phase. J Am Chem Soc 2016; 138:9224-33. [DOI: 10.1021/jacs.6b04550] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Liudmila Voronina
- Laboratoire
de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Antoine Masson
- Laboratoire
de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Michael Kamrath
- Laboratoire
de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Franziska Schubert
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, D-14195 Berlin, Germany
| | - David Clemmer
- Department
of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Carsten Baldauf
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, D-14195 Berlin, Germany
| | - Thomas Rizzo
- Laboratoire
de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
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Swiech D, Ozaki Y, Kim Y, Proniewicz E. Surface- and tip-enhanced Raman scattering of bradykinin onto the colloidal suspended Ag surface. Phys Chem Chem Phys 2016; 17:17140-9. [PMID: 26068400 DOI: 10.1039/c5cp02319j] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this paper, surface- (SERS) and tip-enhanced Raman scattering (TERS) techniques were used to determine the adsorption mode of bradykinin (BK), a small peptide implicated in, for example, carcinoma growth, onto colloidal suspended Ag surfaces under various environmental conditions, including: peptide concentrations (10(-5)-10(-7) M), excitation wavelengths (514.5 and 785.0 nm), and pH of aqueous sol solutions (from pH = 3 to pH = 11). The metal surface plasmon and rheology of the colloidal suspended Ag surface were explored by ultraviolet-visible (UV-Vis) spectroscopy and atomic force/scanning electron microscopy (AFM/SEM). The SERS results indicated that the peptide concentration of 10(-5) M was the optimal peptide concentration for monolayer colloidal coverage. The Phe(5/8) and Arg(9) residues of BK generally participated in the interactions with colloidal suspended Ag surfaces. The amide group appeared to be arranged in the same manner to the Ag surface in the pH range of 3 to 11. At acidic pH of the solution (pH = 3 to 5), the BK -COO(-) terminal group binds to the Ag surface as a bidentate (at pH = 3) or monodentate (at pH = 5) chelating ligand. At pH = 11, the imino group of Arg(9), probably due to its -C[double bond, length as m-dash]N(⊕)H2 protonation state, was not involved in the interaction with Ag. The reduction in the solution alkalinity (pH = 9) produced the deprotonation of the -C=N(⊕)H2 group followed by group rearrangement in a way favoring the interaction between the lone electron pair on N and Ag. The TERS studies confirmed the proposed, on the basis of SERS, behavior of BK onto the colloidal suspended Ag at pH = 7 and showed that in different points of the colloidal suspended Ag surface the same peptide fragments approximately having the same orientations with respect to this surface interact with it.
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Affiliation(s)
- D Swiech
- Faculty of Foundry Engineering, AGH University of Science and Technology, ul. Reymonta 23, 30-059 Kraków, Poland
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Święch D, Kim Y, Proniewicz E. Surface-enhanced Raman studies of bradykinin using colloidal gold. VIBRATIONAL SPECTROSCOPY 2016; 83:101-107. [DOI: 10.1016/j.vibspec.2016.01.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2024]
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Voronina L, Rizzo TR. Spectroscopic studies of kinetically trapped conformations in the gas phase: the case of triply protonated bradykinin. Phys Chem Chem Phys 2015; 17:25828-36. [DOI: 10.1039/c5cp01651g] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
We explore conformational space of triply protonated bradykinin. Three conformational families are mobility-separated and spectroscopically characterized. Kinetically trapped structures are identified via annealing.
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Affiliation(s)
- Liudmila Voronina
- Laboratoire de Chimie Physique Moléculaire
- École Polytechnique Fédérale de Lausanne
- EPFL SB ISIC LCPM
- CH-1015 Lausanne
- Switzerland
| | - Thomas R. Rizzo
- Laboratoire de Chimie Physique Moléculaire
- École Polytechnique Fédérale de Lausanne
- EPFL SB ISIC LCPM
- CH-1015 Lausanne
- Switzerland
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Wałęsa R, Ptak T, Siodłak D, Kupka T, Broda MA. Experimental and theoretical NMR studies of interaction between phenylalanine derivative and egg yolk lecithin. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2014; 52:298-305. [PMID: 24639342 DOI: 10.1002/mrc.4064] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Revised: 01/18/2014] [Accepted: 02/28/2014] [Indexed: 06/03/2023]
Abstract
The interaction of phenylalanine diamide (Ac-Phe-NHMe) with egg yolk lecithin (EYL) in chloroform was studied by (1)H and (13)C NMR. Six complexes EYL-Ac-Phe-NHMe, stabilized by N-H···O or/and C-H···O hydrogen bonds, were optimized at M06-2X/6-31G(d,p) level. The assignment of EYL and Ac-Phe-NHMe NMR signals was supported using GIAO (gauge including atomic orbital) NMR calculations at VSXC and B3LYP level of theory combined with STO-3Gmag basis set. Results of our study indicate that the interaction of peptides with lecithin occurs mainly in the polar 'head' of the lecithin. Additionally, the most probable lecithin site of H-bond interaction with Ac-Phe-NHMe is the negatively charged oxygen in phosphate group that acts as proton acceptor.
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Affiliation(s)
- Roksana Wałęsa
- Faculty of Chemistry, University of Opole, Oleska 48 Str., 45-052, Opole, Poland
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Skołuba D, Sobolewski D, Prahl A, Proniewicz E. Interaction of Bradykinin and B 2Bradykinin Receptor Antagonists with Colloidal Au Surface Explored by Surface-Enhanced Raman Scattering. JOURNAL OF SPECTROSCOPY 2014; 2014:1-8. [DOI: 10.1155/2014/619373] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2024]
Abstract
Bradykinin (BK), an endogenous peptide hormone, which is involved in a number of physiological and pathophysiological processes, and the potent B2bradykinin receptor antagonists, [D-Arg0,Hyp3,Thi5,8,L-Pip7]BK, Aaa[D-Arg0,Hyp3,Thi5,8,L-Pip7]BK, [D-Arg0,Hyp3,Thi5,D-Phe7,L-Pip8]BK, and Aaa[D-Arg0,Hyp3,Thi5,D-Phe7,L-Pip8]BK, were deposited onto colloidal Au particles of 20 nm size. Interaction of these molecules with colloidal Au surface was explored by surface-enhanced Raman scattering (SERS). Briefly, it was shown that BK adsorbs on the Au surface mainly through the Phe5/Phe8residues. In case of the BK specifically modified analogues mainly the Pip and Thi rings are involved in the interaction process; however, Pip and Thi adopt slightly different orientation with respect to Au for each of the analogues. In addition, the lack of the Aaa vibrations, together with the enhancement of the Thi, Pip, or Phe modes, emphasizes the importance of theC-terminus in the interaction with the Au surface.
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Affiliation(s)
- Dominika Skołuba
- Faculty of Chemistry, Jagiellonian University, Ulica Ingardena 3, 30-060 Krakow, Poland
| | - Dariusz Sobolewski
- Department of Chemistry, University of Gdansk, Sobieskiego 18, 80-592 Gdansk, Poland
| | - Adam Prahl
- Department of Chemistry, University of Gdansk, Sobieskiego 18, 80-592 Gdansk, Poland
| | - Edyta Proniewicz
- Faculty of Foundry Engineering, AGH University of Science and Technology, ul. Reymonta 23, 30-059 Krakow, Poland
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Saludes JP, Morton LA, Coulup SK, Fiorini Z, Cook BM, Beninson L, Chapman ER, Fleshner M, Yin H. Multivalency amplifies the selection and affinity of bradykinin-derived peptides for lipid nanovesicles. MOLECULAR BIOSYSTEMS 2013; 9:2005-9. [PMID: 23715428 PMCID: PMC3764994 DOI: 10.1039/c3mb70109c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
The trimer of a bradykinin derivative displayed a more than five-fold increase in binding affinity for phosphatidylserine-enriched nanovesicles as compared to its monomeric precursor. The nanovesicle selection is directly correlated with multivalency, which amplifies the electrostatic attraction. This strategy may lead to the development of novel molecular probes for detecting highly curved membrane bilayers.
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Affiliation(s)
- Jonel P. Saludes
- Department of Chemistry & Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA
- Department of Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Leslie A. Morton
- Department of Chemistry & Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA
| | - Sara K. Coulup
- Department of Chemistry & Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA
| | - Zeno Fiorini
- Department of Chemistry & Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA
| | - Brandan M. Cook
- Department of Chemistry, Washington State University, Pullman, WA 99164, USA
| | - Lida Beninson
- Department of Integrative Physiology, University of Colorado, Boulder, CO 80309, USA
| | - Edwin R. Chapman
- Howard Hughes Medical Institute and Department of Neuroscience, University of Wisconsin, Madison, WI 53706, USA
| | - Monika Fleshner
- Department of Integrative Physiology, University of Colorado, Boulder, CO 80309, USA
| | - Hang Yin
- Department of Chemistry & Biochemistry and BioFrontiers Institute, University of Colorado, Boulder, CO 80309, USA
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Proniewicz E, Skołuba D, Ignatjev I, Niaura G, Sobolewski D, Prahl A, Proniewicz LM. Influence of applied potential on bradykinin adsorption onto Ag, Au, and Cu electrodes. JOURNAL OF RAMAN SPECTROSCOPY 2013; 44:655-664. [DOI: 10.1002/jrs.4246] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2024]
Abstract
Surface‐enhanced Raman scattering, electrochemistry, and generalized two‐dimensional correlation analysis (G2DCA) methods were used to characterize bradykinin (BK), a hormone which is known to be involved in small‐cell and non‐small‐cell lung carcinoma and prostate cancer. BK was deposited onto Ag, Au, and Cu electrode surfaces under different applied electrode potentials (−1.000 V to 0.200 V) in aqueous solutions. Based on the analysis of the enhancement, the broadening, and the shifts in the wavenumbers of individual bands, specific conclusions were drawn regarding the peptide geometry and changes in this geometry that occurred when the electrode type and applied electrode potential were varied. Briefly, BK deposited onto the Ag, Au, and Cu electrode surfaces showed bands that were due to the vibrations of moieties in contact with or in close proximity to the electrode surfaces and were thus located on the same side of the polypeptide backbone. These moieties included the Phe, Arg, and Pro residues. The findings for adsorbed BK were fully supported by G2DCA, which also allowed us to determine the order in which changes occurred when the electrode potential was changed. In addition, it was found that at negative electrode potentials, the Phe rings and methylene groups interact with Ag electrode surface. No such interaction was observed for Au and Cu electrodes. Copyright © 2013 John Wiley & Sons, Ltd.
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Affiliation(s)
- Edyta Proniewicz
- Faculty of Chemistry Jagiellonian University ul. Ingardena 3 30‐060 Krakow Poland
| | - Dominika Skołuba
- Faculty of Chemistry Jagiellonian University ul. Ingardena 3 30‐060 Krakow Poland
| | - Ilja Ignatjev
- Institute of Chemistry Center for Physical Sciences and Technology A. Gostauto 9 LT‐01108 Vilnius Lithuania
| | - Gediminas Niaura
- Institute of Chemistry Center for Physical Sciences and Technology A. Gostauto 9 LT‐01108 Vilnius Lithuania
| | - Dariusz Sobolewski
- Faculty of Chemistry University of Gdansk Sobieskiego 18 80‐952 Gdansk Poland
| | - Adam Prahl
- Faculty of Chemistry University of Gdansk Sobieskiego 18 80‐952 Gdansk Poland
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Proniewicz E, Skołuba D, Kudelski A, Sobolewski D, Prahl A, Kim Y, Proniewicz LM. B 2 bradykinin receptor antagonists: adsorption mechanism on electrochemically roughened Ag substrate. JOURNAL OF RAMAN SPECTROSCOPY 2013; 44:205-211. [DOI: 10.1002/jrs.4182] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2024]
Abstract
In this paper, the surface‐enhanced Raman scattering (SERS) spectra of the potent B2 bradykinin receptor antagonists, [D‐Arg0,Hyp3,Thi5,8,L‐Pip7]BK, Aaa[D‐Arg0,Hyp3,Thi5,8,L‐Pip7]BK, [D‐Arg0,Hyp3,Thi5,D‐Phe7,L‐Pip8]BK, and Aaa[D‐Arg0,Hyp3,Thi5,D‐Phe7,L‐Pip8]BK, were measured when immobilized onto a highly specific electrochemically roughened SERS‐active Ag substrate characterized by the formation of a 50 – 150 nm Ag islands on its surface. The observed SERS bands corresponding to different vibrational modes of the molecule, attached to or near Ag, and the variations in these bands resulting from competitive interactions of the functional groups of the peptides with the SERS‐active Ag surfaces and reorientation occurring over time of adsorption were analyzed in this study. Copyright © 2012 John Wiley & Sons, Ltd.
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Affiliation(s)
- Edyta Proniewicz
- Faculty of Chemistry Jagiellonian University ul. Ingardena 3 30‐060 Krakow Poland
| | - Dominika Skołuba
- Faculty of Chemistry Jagiellonian University ul. Ingardena 3 30‐060 Krakow Poland
| | - Andrzej Kudelski
- Department of Chemistry University of Warsaw ul. L. Pasteura 1 02‐093 Warsaw Poland
| | - Dariusz Sobolewski
- Department of Chemistry University of Gdansk Sobieskiego 18 80‐952 Gdansk Poland
| | - Adam Prahl
- Department of Chemistry University of Gdansk Sobieskiego 18 80‐952 Gdansk Poland
| | - Younkyoo Kim
- Department of Chemistry Hankuk University of Foreign Studies Yongin Kyunggi‐Do 449‐791 Korea
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Saludes JP, Morton LA, Ghosh N, Beninson LA, Chapman ER, Fleshner M, Yin H. Detection of highly curved membrane surfaces using a cyclic peptide derived from synaptotagmin-I. ACS Chem Biol 2012; 7:1629-35. [PMID: 22769435 DOI: 10.1021/cb3002705] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The generation of highly curved membranes is essential to cell growth, division, and movement. Recent research in the field is focused to answer questions related to the consequences of changes in the topology of the membrane once it is created, broadly termed as membrane curvature sensing. Most probes that are used to study curvature sensing are intact membrane active proteins such as DP1/Yop1p, ArfGAP1, BAR domains, and Synaptotagmin-I (Syt1). Taking a cue from nature, we created the cyclic peptide C2BL3C based on the membrane penetration C2B loop 3 of Syt1 via "Click" chemistry. Using a combination of spectroscopic techniques, we investigated the peptide-lipid interactions of this peptide with synthetic phospholipid vesicles and exosomes from rat blood plasma. We found that the macrocycle peptide probe was selective for lipid vesicles with highly curved surfaces (d < 100 nm). These results suggested that C2BL3C functions as a selective detector of highly curved phospholipid bilayers.
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Affiliation(s)
| | | | | | | | - Edwin R. Chapman
- Howard Hughes Medical Institute
and Department of Neuroscience, University of Wisconsin, Madison, Wisconsin 53706, United States
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Manna M, Mukhopadhyay C. Molecular dynamics simulations of the interactions of kinin peptides with an anionic POPG bilayer. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2011; 27:3713-3722. [PMID: 21355573 DOI: 10.1021/la104046z] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We have performed molecular dynamics simulations of peptide hormone bradykinin (BK) and its fragment des-Arg9-BK in the presence of an anionic lipid bilayer, with an aim toward delineating the mechanism of action related to their bioactivity. Starting from the initial aqueous environment, both of the peptides are quickly adsorbed and stabilized on the cell surface. Whereas BK exhibits a stronger interaction with the membrane and prefers to stay on the interface, des-Arg9-BK, with the loss of C-terminal Arg, penetrates further. The heterogeneous lipid-water interface induces β-turn-like structure in the otherwise inherently flexible peptides. In the membrane-bound state, we observed C-terminal β-turn formation in BK, whereas for des-Arg9-BK, with the deletion of Arg9, turn formation occurred in the middle of the peptide. The basic Arg residues anchor the peptide to the bilayer by strong electrostatic interactions with charged lipid headgroups. Simulations with different starting orientations of the peptides with respect to the bilayer surface lead to the same observations, namely, the relative positioning of the peptides on the membrane surface, deeper penetration of the des-Arg9-BK, and the formation of turn structures. The lipid headgroups adjacent to the bound peptides become substantially tilted, causing bilayer thinning near the peptide contact region and increase the degree of disorder in nearby lipids. Again, because of hydrogen bonding with the peptide, the neighboring lipid's polar heads exhibit considerably reduced flexibility. Corroborating findings from earlier experiments, our results provide important information about how the lipid environment promotes peptide orientation/conformation and how the peptide adapts to the environment.
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Affiliation(s)
- Moutusi Manna
- Department of Chemistry, University of Calcutta, 92, A. P. C. Road, Kolkata-700 009, India
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