1
|
Del Arco J, Fernández-Lucas J. Purine and pyrimidine salvage pathway in thermophiles: a valuable source of biocatalysts for the industrial production of nucleic acid derivatives. Appl Microbiol Biotechnol 2018; 102:7805-7820. [PMID: 30027492 DOI: 10.1007/s00253-018-9242-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 07/11/2018] [Accepted: 07/11/2018] [Indexed: 12/25/2022]
Abstract
Due to their similarity to natural counterparts, nucleic acid derivatives (nucleobases, nucleosides, and nucleotides, among others) are interesting molecules for pharmaceutical, biomedical, or food industries. For this reason, there is increasing worldwide demand for the development of efficient synthetic processes for these compounds. Chemical synthetic methodologies require numerous protection-deprotection steps and often lead to the presence of undesirable by-products or enantiomeric mixtures. These methods also require harsh operating conditions, such as the use of organic solvents and hazard reagents. Conversely, enzymatic production by whole cells or enzymes improves regio-, stereo-, and enantioselectivity and provides an eco-friendly alternative. Because of their essential role in purine and pyrimidine scavenging, enzymes from purine and pyrimidine salvage pathways are valuable candidates for the synthesis of many different nucleic acid components. In recent years, many different enzymes from these routes, such as nucleoside phosphorylases, nucleoside kinases, 2'-deoxyribosyltransferases, phosphoribosyl transferases, or deaminases, have been successfully employed as biocatalysts in the production of nucleobase, nucleoside, or nucleotide analogs. Due to their great activity and stability at extremely high temperatures, the use of enzymes from thermophiles in industrial biocatalysis is gaining momentum. Thermophilic enzymes not only display unique characteristics such as temperature, chemical, and pH stability but also provide many different advantages from an industrial perspective. This mini-review aims to cover the most representative enzymatic approaches for the synthesis of nucleic acid derivatives. In this regard, we provide detailed comments about enzymes involved in crucial steps of purine and pyrimidine salvage pathways in thermophiles, as well as their biological role, biochemical characterization, active site mechanism, and substrate specificity. In addition, the most interesting synthetic examples reported in the literature are also included.
Collapse
Affiliation(s)
- Jon Del Arco
- Applied Biotechnology Group, Faculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Urbanización El Bosque, c/ Tajo, s/n, E-28670, Villaviciosa de Odón, Madrid, Spain
| | - Jesús Fernández-Lucas
- Applied Biotechnology Group, Faculty of Biomedical and Health Sciences, Universidad Europea de Madrid, Urbanización El Bosque, c/ Tajo, s/n, E-28670, Villaviciosa de Odón, Madrid, Spain. .,Grupo de Investigación en Desarrollo Agroindustrial Sostenible, Universidad de la Costa, CUC, Calle 58 #55-66, Barranquilla, Colombia.
| |
Collapse
|
2
|
del Arco J, Acosta J, Pereira HM, Perona A, Lokanath NK, Kunishima N, Fernández-Lucas J. Enzymatic Production of Non-Natural Nucleoside-5′-Monophosphates by a Thermostable Uracil Phosphoribosyltransferase. ChemCatChem 2017. [DOI: 10.1002/cctc.201701223] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Jon del Arco
- Applied Biotechnology Group; Universidad Europea de Madrid; Urbanización El Bosque Calle Tajo s/n 28670 Villaviciosa de Odón Madrid) Spain
| | - Javier Acosta
- Applied Biotechnology Group; Universidad Europea de Madrid; Urbanización El Bosque Calle Tajo s/n 28670 Villaviciosa de Odón Madrid) Spain
| | - Humberto M. Pereira
- Instituto de Física de São Carlos; Universidade de São Paulo; CP369 13560-970 São Carlos SP Brazil
| | - Almudena Perona
- Applied Biotechnology Group; Universidad Europea de Madrid; Urbanización El Bosque Calle Tajo s/n 28670 Villaviciosa de Odón Madrid) Spain
| | - Neratur K. Lokanath
- Department of Studies in Physics; University of Mysore; Mysore 570 006 India
| | - Naoki Kunishima
- RIKEN SPring-8 Center; 1-1-1 Kouto Sayo Hyogo 679-5148 Japan
| | - Jesús Fernández-Lucas
- Applied Biotechnology Group; Universidad Europea de Madrid; Urbanización El Bosque Calle Tajo s/n 28670 Villaviciosa de Odón Madrid) Spain
- Grupo de Investigación en Desarrollo Agroindustrial Sostenible; Universidad de la Costa; CUC; Calle 58 # 55-66 Barranquilla Colombia
| |
Collapse
|
3
|
Del Arco J, Cejudo-Sanches J, Esteban I, Clemente-Suárez VJ, Hormigo D, Perona A, Fernández-Lucas J. Enzymatic production of dietary nucleotides from low-soluble purine bases by an efficient, thermostable and alkali-tolerant biocatalyst. Food Chem 2017; 237:605-611. [PMID: 28764042 DOI: 10.1016/j.foodchem.2017.05.136] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 05/16/2017] [Accepted: 05/28/2017] [Indexed: 11/17/2022]
Abstract
Traditionally, enzymatic synthesis of nucleoside-5'-monophosphates (5'-NMPs) using low water-soluble purine bases has been described as less efficient due to their low solubility in aqueous media. The use of enzymes from extremophiles, such as thermophiles or alkaliphiles, offers the potential to increase solubilisation of these bases by employing high temperatures or alkaline pH. This study describes the cloning, expression and purification of hypoxanthine-guanine-xanthine phosphoribosyltransferase from Thermus thermophilus (TtHGXPRT). Biochemical characterization indicates TtHGXPRT as a homotetramer with excellent activity and stability across a broad range of temperatures (50-90°C) and ionic strengths (0-500mMNaCl), but it also reveals an unusually high activity and stability under alkaline conditions (pH range 8-11). In order to explore the potential of TtHGXPRT as an industrial biocatalyst, enzymatic production of several dietary 5'-NMPs, such as 5'-GMP and 5'-IMP, was carried out at high concentrations of guanine and hypoxanthine.
Collapse
Affiliation(s)
- J Del Arco
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - J Cejudo-Sanches
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - I Esteban
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - V J Clemente-Suárez
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - D Hormigo
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - A Perona
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain
| | - J Fernández-Lucas
- Applied Biotechnology Group, Universidad Europea de Madrid, Urbanización El Bosque, Calle Tajo, s/n, 28670 Villaviciosa de Odón, Madrid, Spain; Grupo de Investigación en Desarrollo Agroindustrial Sostenible, Universidad de la Costa, CUC, Calle 58 # 55-66, Barranquilla, Colombia.
| |
Collapse
|
4
|
Del Arco J, Martinez M, Donday M, Clemente-Suarez VJ, Fernández-Lucas J. Cloning, expression and biochemical characterization of xanthine and adenine phosphoribosyltransferases from Thermus thermophilus HB8. BIOCATAL BIOTRANSFOR 2017. [DOI: 10.1080/10242422.2017.1313837] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Jon Del Arco
- Applied Biotechnology Group, Research and Doctoral School, European University of Madrid, Urbanización El Bosque, Madrid, Spain
| | - María Martinez
- Applied Biotechnology Group, Research and Doctoral School, European University of Madrid, Urbanización El Bosque, Madrid, Spain
| | - Manuel Donday
- Applied Biotechnology Group, Research and Doctoral School, European University of Madrid, Urbanización El Bosque, Madrid, Spain
| | - Vicente Javier Clemente-Suarez
- Applied Biotechnology Group, Research and Doctoral School, European University of Madrid, Urbanización El Bosque, Madrid, Spain
| | - Jesús Fernández-Lucas
- Applied Biotechnology Group, Research and Doctoral School, European University of Madrid, Urbanización El Bosque, Madrid, Spain
- Grupo de Investigación en Desarrollo Agroindustrial Sostenible, Ingenieróa Agroindustrial, Universidad de la Costa, CUC, Barranquilla, Colombia
| |
Collapse
|
5
|
Chan EKL, Damoiseaux J, Carballo OG, Conrad K, de Melo Cruvinel W, Francescantonio PLC, Fritzler MJ, Garcia-De La Torre I, Herold M, Mimori T, Satoh M, von Mühlen CA, Andrade LEC. Report of the First International Consensus on Standardized Nomenclature of Antinuclear Antibody HEp-2 Cell Patterns 2014-2015. Front Immunol 2015; 6:412. [PMID: 26347739 DOI: 10.3389/fimmu.2015.00412/bibtex] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Accepted: 07/27/2015] [Indexed: 05/26/2023] Open
Abstract
During the 12th International Workshop on Autoantibodies and Autoimmunity held in Sao Paulo, Brazil, on August 28, 2014, a full day session was devoted to establishing a consensus on the nomenclature of staining patterns observed in the antinuclear antibody (ANA) indirect immunofluorescence test on HEp-2 cells. The current report summarizes the collective agreements with input from the host Brazilian and international communities that represented research, clinical, and diagnostic service laboratories. Patterns are categorized in three major groups (nuclear, cytoplasmic, and mitotic patterns) and each pattern has been defined and described in detail. The consensus nomenclature and representative patterns are made available online at the international consensus on antinuclear antibody pattern (ICAP) website (www.ANApatterns.org). To facilitate continuous improvement and input, specific comments on ICAP are encouraged and these will be discussed in subsequent ICAP meetings. The ultimate goal with the establishment of the ICAP is to promote harmonization and understanding of autoantibody test nomenclature, as well as interpretation guidelines for ANA testing, thereby optimizing usage in patient care.
Collapse
Affiliation(s)
- Edward K L Chan
- Department of Oral Biology, University of Florida , Gainesville, FL , USA
| | - Jan Damoiseaux
- Central Diagnostic Laboratory, Maastricht University Medical Center , Maastricht , Netherlands
| | - Orlando Gabriel Carballo
- Laboratory of Immunology, Hospital Carlos G. Durand , Buenos Aires , Argentina ; Department of Immunology, Instituto Universitario del Hospital Italiano , Buenos Aires , Argentina
| | - Karsten Conrad
- Institute of Immunology, Technical University of Dresden , Dresden , Germany
| | | | | | - Marvin J Fritzler
- Department of Medicine, Cumming School of Medicine, University of Calgary , Calgary, AB , Canada
| | - Ignacio Garcia-De La Torre
- Department of Immunology and Rheumatology, Hospital General de Occidente, University of Guadalajara , Guadalajara , Mexico
| | - Manfred Herold
- Department of Internal Medicine VI, Medical University of Innsbruck , Innsbruck , Austria
| | - Tsuneyo Mimori
- Department of the Control for Rheumatic Diseases, Graduate School of Medicine, Kyoto University , Kyoto , Japan ; Department of Rheumatology and Clinical Immunology, Graduate School of Medicine, Kyoto University , Kyoto , Japan
| | - Minoru Satoh
- Department of Clinical Nursing, University of Occupational and Environmental Health , Kitakyushu , Japan
| | | | - Luis E C Andrade
- Rheumatology Division, Escola Paulista de Medicina, Universidade Federal de São Paulo , São Paulo , Brazil ; Immunology Division, Fleury Medicine and Health Laboratories , São Paulo , Brazil
| |
Collapse
|
6
|
Chan EKL, Damoiseaux J, Carballo OG, Conrad K, de Melo Cruvinel W, Francescantonio PLC, Fritzler MJ, Garcia-De La Torre I, Herold M, Mimori T, Satoh M, von Mühlen CA, Andrade LEC. Report of the First International Consensus on Standardized Nomenclature of Antinuclear Antibody HEp-2 Cell Patterns 2014-2015. Front Immunol 2015; 6:412. [PMID: 26347739 PMCID: PMC4542633 DOI: 10.3389/fimmu.2015.00412] [Citation(s) in RCA: 216] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Accepted: 07/27/2015] [Indexed: 12/30/2022] Open
Abstract
During the 12th International Workshop on Autoantibodies and Autoimmunity held in Sao Paulo, Brazil, on August 28, 2014, a full day session was devoted to establishing a consensus on the nomenclature of staining patterns observed in the antinuclear antibody (ANA) indirect immunofluorescence test on HEp-2 cells. The current report summarizes the collective agreements with input from the host Brazilian and international communities that represented research, clinical, and diagnostic service laboratories. Patterns are categorized in three major groups (nuclear, cytoplasmic, and mitotic patterns) and each pattern has been defined and described in detail. The consensus nomenclature and representative patterns are made available online at the international consensus on antinuclear antibody pattern (ICAP) website (www.ANApatterns.org). To facilitate continuous improvement and input, specific comments on ICAP are encouraged and these will be discussed in subsequent ICAP meetings. The ultimate goal with the establishment of the ICAP is to promote harmonization and understanding of autoantibody test nomenclature, as well as interpretation guidelines for ANA testing, thereby optimizing usage in patient care.
Collapse
Affiliation(s)
- Edward K. L. Chan
- Department of Oral Biology, University of Florida, Gainesville, FL, USA
| | - Jan Damoiseaux
- Central Diagnostic Laboratory, Maastricht University Medical Center, Maastricht, Netherlands
| | - Orlando Gabriel Carballo
- Laboratory of Immunology, Hospital Carlos G. Durand, Buenos Aires, Argentina
- Department of Immunology, Instituto Universitario del Hospital Italiano, Buenos Aires, Argentina
| | - Karsten Conrad
- Institute of Immunology, Technical University of Dresden, Dresden, Germany
| | | | | | - Marvin J. Fritzler
- Department of Medicine, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
| | - Ignacio Garcia-De La Torre
- Department of Immunology and Rheumatology, Hospital General de Occidente, University of Guadalajara, Guadalajara, Mexico
| | - Manfred Herold
- Department of Internal Medicine VI, Medical University of Innsbruck, Innsbruck, Austria
| | - Tsuneyo Mimori
- Department of the Control for Rheumatic Diseases, Graduate School of Medicine, Kyoto University, Kyoto, Japan
- Department of Rheumatology and Clinical Immunology, Graduate School of Medicine, Kyoto University, Kyoto, Japan
| | - Minoru Satoh
- Department of Clinical Nursing, University of Occupational and Environmental Health, Kitakyushu, Japan
| | | | - Luis E. C. Andrade
- Rheumatology Division, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, Brazil
- Immunology Division, Fleury Medicine and Health Laboratories, São Paulo, Brazil
| |
Collapse
|
7
|
Xiao J, Tolbert TJ. Synthesis of Polymerizable Protein Monomers for Protein-Acrylamide Hydrogel Formation. Biomacromolecules 2009; 10:1939-46. [DOI: 10.1021/bm900339q] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Junpeng Xiao
- Interdisciplinary Biochemistry Graduate Program and Department of Chemistry, Indiana University, Bloomington, Indiana 47405
| | - Thomas J. Tolbert
- Interdisciplinary Biochemistry Graduate Program and Department of Chemistry, Indiana University, Bloomington, Indiana 47405
| |
Collapse
|