Gimme shelter: The effect of rocks and moonlight on occupancy and activity pattern of an endangered rodent, the garden dormouse Eliomys quercinus

No city for wetland species: habitat associations affect mammal persistence in urban areas

The fast rate of replacement of natural areas by expanding cities is a key threat to wildlife worldwide. Many wild species occur in cities, yet little is known on the dynamics of urban wildlife assemblages due to species' extinction and colonization that may occur in response to the rapidly evolving conditions within urban areas. Namely, species' ability to spread within urban areas, besides habitat preferences, is likely to shape the fate of species once they occur in a city. Here we use a long-term dataset on mammals occurring in one of the largest and most ancient cities in Europe to assess whether and how spatial spread and association with specific habitats drive the probability of local extinction within cities. Our analysis included mammalian records dating between years 1832 and 2023, and revealed that local extinctions in urban areas are biased towards species associated with wetlands and that were naturally rare within the city. Besides highlighting the role of wetlands within urban areas for conserving wildlife, our work also highlights the importance of long-term biodiversity monitoring in highly dynamic habitats such as cities, as a key asset to better understand wildlife trends and thus foster more sustainable and biodiversity-friendly cities.

Seasonal Changes in Nycthemeral Availability of Sympatric Temperate Mixed Forest Rodents: The Predators' Perspective

(1) Background: Bank voles (Clethrionomys glareolus) and Apodemus mice are of exceptional importance as prey for predators in temperate mixed forests. We hypothesized that overall prey availability would increase linearly with prey frequency, and that the daylight hours, which are considered particularly dangerous, would be used only during seasonal rodent population peaks and only in the twilight hours. (2) Methods: We conducted a two-year camera-trapping study in an inner alpine mixed forest and collected 19,138 1 min videos in 215 camera-trap nights. Prey availability was defined as the pseudo-replication-limited maximum number of the respective rodent taxon per 30 min period, summed per season. (3) Results: Overall prey availability increased with frequency, i.e., the maximum number of rodent individuals per camera-trap night. Seasonally, Apodemus mice were particularly available to predators in the summer and bank voles in the autumn after a tree mast year. In both cases, this was accompanied by a significant increase in diurnal availability. During the population peak of Apodemus mice, the nocturnal availability of bank voles decreased without a concurrent increase in absolute diurnal availability, even though the significant relative shift to diurnal activity superficially suggested this. Bank voles were active throughout the day, while Apodemus mice were nocturnal and (rarely) crepuscular. (4) Conclusions: Availability of rodents to predators, especially during daylight hours, was mainly dependent on their tree mast-induced increased frequencies. Bank voles likewise responded strongly to interspecific competition with the larger and aggressive Apodemus mice, which negatively affected availability to predators. At our seasonal level of evaluation, we conclude that nycthemeral availability of forest-dwelling rodents to generalist predators of temperate mixed forests is predominantly driven by bottom-up mechanisms.

Photoluminescence in the Garden dormouse (Eliomys quercinus)

Every year, more and more discoveries of photoluminescence in different mammal species are made. The more recent cases thus far have been in duck-billed platypus (Ornithorhyncus anatinus), New World squirrels (Glaucomys spp.) and springhare (Pedetidae). Now we can add another species to the list: the garden dormouse (Eliomys quercinus), an endemic rodent to Europe, currently categorized as Near Threatened (NT) by the IUCN. The fluorescence was described and compared qualitatively in museum specimens, deceased and hibernating animals. The feet and nose of the hibernating dormouse displayed greenish-blue photoluminescence under UV light through a yellow filter, whereas the fur was bright red. The live animal had more vivid red colouring than the museum specimen. The fading and changing of the colour and brightness of photoluminescence was observed in a recently deceased animal and even more strongly in museum specimens.

High Frequency of Apodemus Mice Boosts Inverse Activity Pattern of Bank Voles, Clethrionomys glareolus, through Non-Aggressive Intraguild Competition

Sympatric animals with similar requirements can separate their ecological niches along the microhabitat, food and time axes. There may be alternative reasons for an interspecific different activity pattern, such as intraspecific social constraints, predator avoidance or physical conditions such as temperature, precipitation and illumination. We investigated the importance of intraguild competition in a 2-year study in an inner-alpine mixed forest, using small forest rodents as our model species. Apodemus mice were the physically superior, and bank voles, Clethrionomys glareolus, the inferior competitor. We predicted that bank voles would exhibit increased diurnal activity when frequencies of the almost exclusively nocturnal Apodemus mice were high during a seed mast year. To investigate this, we recorded 19,138 1 min videos. Controlling for confounding variables, bank vole diurnal activity was significantly related to the frequency of Apodemus mice. We assume that at high densities of Apodemus mice, a purely nocturnal separation in the niche dimensions of time, habitat and microhabitat is no longer sufficient, and therefore an inverse activity pattern by the bank voles is reinforced. Our videos showed, however, that this does not require persistent aggressive meetings and we explain this by the long co-evolution of the taxa under study.

Indirect Human Influences in Fear Landscapes: Varying Effects of Moonlight on Small Mammal Activity along Man-Made Gradients of Vegetation Structure

Risk of predation is one of the main constraints of small mammal distribution and foraging activity. Aside from numerical effects on population size due to the presence and abundance of predators, indirect cues, such as vegetation structure and moonlight, determine patterns of activity and microhabitat use by small mammals. Indirect cues are expected to interact, as shading provided by vegetation can suppress the effects of changing moonlight. We analyzed the effects of moonlight levels on the activity patterns of three common small mammal species in Mediterranean habitats, and tested whether moonlight effects were modulated by shadowing associated with the development of tall vegetation due to spontaneous afforestation following land abandonment. A. sylvaticus, a strictly nocturnal species, decreased activity under moonlight with no interactive effects of vegetation cover. C. russula showed no activity change with moonlight levels and M. spretus increased activity, although activity in both species was mostly determined by vegetation cover, that favored it. The effects of moonlight on small mammal activity were not homogeneous among species, nor were the interactive effects of man-made gradients of habitat structure, a fact that will produce community changes along vegetation gradients mediated by varying fear landscapes.

Variations in home range and core area of red-backed voles (Myodes regulus) in response to various ecological factors

The characteristics of animal distribution are determined by interactions between the resource requirements of animals and ecological factors. This study sought to evaluate the effects of diverse ecological factors on the home range and core area of red-backed voles (Myodes regulus) in a natural deciduous forest located on Mt. Gariwang, Pyeongchang and Jeongseon, South Korea. Our study focused on four types of ecological factors: topography, climate, cover, and demography. A total of 29 voles were radio-tracked from August to September 2021. Home range (95% utilization distribution; UD) and core area (50% UD) were calculated using the kernel density estimator (KDE). The home range (1659.49 m²) and core area (317.08 m²) were negatively affected by altitude. The lunar phase and temperature negatively and positively influenced the home range and core area, respectively. The home range was positively affected by understory vegetation, whereas the core area was not. The core area increased within microhabitats with a high density of conspecific individuals, with males having a larger home range (2006.19 m²) and core area (375.40 m²) than females (1043.13 m² and 213.39 m², respectively). These findings provide a deeper understanding of the diverse ecological factors affecting the distributions of animals, especially small rodents.

DoMoS − an open-source device for automated monitoring of endangered garden dormice (Eliomys quercinus)

Obtaining biological and behavioural data on wild animals in the field remains a challenging task. Data collection is either very labour-intensive or sometimes even proves impossible without special technical devices. This is especially true for small nocturnal mammals like the endangered garden dormouse (Eliomys quercinus). Here, we present a new device for automated small mammal monitoring, called DoMoS (Dormouse Monitoring System). It integrates the collection of individual hair samples for DNA analysis, a scale to measure body mass, and a camera trap to monitor activity. During a first field test with garden dormice, data on body mass and activity patterns and hair samples have been successfully collected. The system was designed as an open-source project and can thus be replicated and adjusted to other species’ monitoring needs and research questions. The DoMoS enables the study of various data, including the collection of DNA samples, without capturing the target species. Automatic data collection reduces stress for animals and researchers.

Temporal Partitioning between Forest-Dwelling Small Rodents in a Mediterranean Deciduous Woodland

Temporal partitioning is reported as one of the main strategies adopted by coexisting mammal species to limit interspecific competition and behavioural interference. In the last decades, camera-trapping surveys have provided valuable insights in assessing temporal niche and activity rhythms of medium and large-sized mammalian species. Conversely, this method has been poorly applied to small rodents. In this work we aimed at assessing temporal niche partitioning between two species of forest-dwelling small rodents—Apodemus flavicollis and Clethrionomys glareolus—by means of intensive camera-trapping. Camera traps were placed in areas where previous genetic analyses have confirmed the only presence of A. flavicollis amongst wood mice species, to prevent misinterpretation of records. We collected 124 independent records of A. flavicollis and 67 records of C. glareolus over three years. The former was mostly nocturnal, with activity peaking after midnight, whereas the latter was mostly active at dawn and dusk. Therefore, a limited temporal overlap was observed, confirming the potential for interspecific competition. Intraguild interference competition between A. flavicollis and C. glareolus may play a pivotal role forcing C. glareolus to be more active in daylight hours where, the more strictly nocturnal A. flavicollis is present. Nocturnal activity of C. glareolus was limited and not influenced by moon phases, whereas A. flavicollis was mostly active in the darkest nights, avoiding bright moonlight nights.

The squirrel is in the detail: Anatomy and morphometry of the tail in Sciuromorpha (Rodentia, Mammalia)

In mammals, the caudal vertebrae are certainly among the least studied elements of their skeleton. However, the tail plays an important role in locomotion (e.g., balance, prehensility) and behavior (e.g., signaling). Previous studies largely focused on prehensile tails in Primates and Carnivora, in which certain osteological features were selected and used to define tail regions (proximal, transitional, distal). Interestingly, the distribution pattern of these anatomical characters and the relative proportions of the tail regions were similar in both orders. In order to test if such tail regionalization can be applied to Rodentia, we investigated the caudal vertebrae of 20 Sciuridae and six Gliridae species. Furthermore, we examined relationships between tail anatomy/morphometry and locomotion. The position of selected characters along the tail was recorded and their distribution was compared statistically using Spearman rank correlation. Vertebral body length (VBL) was measured to calculate the proportions of each tail region and to perform procrustes analysis on the shape of relative vertebral body length (rVBL) progressions. Our results show that tail regionalization, as defined for Primates and Carnivora, can be applied to almost all investigated squirrels, regardless of their locomotor category. Moreover, major locomotor categories can be distinguished by rVBL progression and tail region proportions. In particular, the small flying squirrels Glaucomys volans and Hylopetes sagitta show an extremely short transitional region. Likewise, several semifossorial taxa can be distinguished by their short distal region. Moreover, among flying squirrels, Petaurista petaurista shows differences with the small flying squirrels, mirroring previous observations on locomotory adaptations based on their inner ear morphometry. Our results show furthermore that the tail region proportions of P. petaurista, phylogenetically more basal than the small flying squirrels, are similar to those of bauplan-conservative arboreal squirrels.

Circadian activity of the fat dormouse Glis glis measured with camera traps at bait stations

Monitoring of small nocturnal and arboreal rodents is difficult and often conducted using indirect techniques. Here, we measured the circadian activity of the fat dormouse (Glis glis) directly using camera traps. The study took place at the Spitzberg in SW Germany. Data were collected using six Bushnell Natureview cameras with a macro lens at baited feeding stations. At 14 out of 41 active camera locations, edible dormice occurred. We collected 301 events between 8th July and 5th October 2018. There were 21.5 events per camera trap (SD 30.4), ranging from 1 to 82. The edible dormouse showed a nocturnal pattern, with a mean activity around midnight at 24:15 h. The pattern shows a slightly bimodal activity. Feeding activity started around or even slightly before sunset and stopped right before sunrise. The study shows that circadian activity, in this respect feeding activity, can be captured by camera trapping, which is a non-invasive method, and can be applied easily in the field.

Distribution modelling of the garden dormouse Eliomys quercinus (Linnaeus, 1766) with novel climate change indicators

The garden dormouse Eliomys quercinus has been declining in both abundance and range since the mid-twentieth century. The eastern edge of its range has contracted from the Ural Mountains to eastern Germany. Habitat loss and fragmentation has been the most supported theory to explain the observed decline. Climate change has been implicated in declines of other terrestrial mammals, but not investigated for E. quercinus. To better understand the factors influencing the distribution of this species and to map habitat suitability for E. quercinus across Europe, we created a Maxent species distribution model. Among the main environmental variables used for the modelling, two novel climate change indicator variables were produced to indicate the degree of climate change between the early twentieth century and the present. Areas of high suitability were mapped, and variable importance estimated using jackknife tests and variable contribution metrics. The climate change indicators outperformed many conventional variables, which could indicate that climate change is a factor behind the current distribution of E. quercinus. We also analysed the land use types where presence points of E. quercinus were located and whether they were in areas of “high nature value farmland”. Over 30% of all spatially filtered presence points corresponded to high nature value farmland areas. Our results could indicate a role for changing climate (particularly in temperature) in the range decline E. quercinus, and for high nature value farmland practices in conserving this species. Field studies and improved monitoring for this species are recommended to confirm both possible findings.

A small neighborhood well-organized: seasonal and daily activity patterns of the community of large and mid-sized mammals around waterholes in the Gobi Desert, Mongolia

Background

Animal communities have complex patterns of ecological segregation at different levels according to food resources, habitats, behavior, and activity patterns. Understanding these patterns among the community is essential for the conservation of the whole ecosystem. However, these networks are difficult to study nowadays, due to anthropic disturbances and local extinctions, making it difficult to conclude if segregation patterns are natural or human-induced. We studied ecological segregation in a community of large and mid-sized mammals in the Great Gobi Desert, a remote arid area free from recent extinctions and human disturbances. Activity patterns of 10 sympatric mammal species were monitored around 6 waterholes through camera-trapping over a two-year period, and analyzed them primarily through circular statistics.

Results

Complex patterns of spatial, seasonal, and daily segregation were found. Overlap in seasonal activity was detected in only 3 of the 45 possible pairs of species. Four species used the waterholes all-year-round, while others peaked their activity during different periods. The Bactrian camel showed continuous daily activity, the grey wolf had bimodal activity, and the argali and Siberian ibex were diurnal, while the others had nocturnal peaks during different hours. Daily and spatial overlap were both detected in only 6 of the 45 pairs. Only one species pair (snow leopard and Eurasian lynx) showed an overlap at two levels: seasonal and daily. Climate and moon phase significantly affected the activity of certain species.

Conclusions

Altogether, the results showed complex patterns of ecological segregation at different levels in the use of the key resource in arid environments: waterholes. These results are important for understanding the biology of these species under natural conditions, as well as potential changes in altered ecosystems, and may help to design conservation strategies.

Does the crested porcupine select coppice forest? Habitat preference and activity patterns of a large rodent in the Lago di Vico Natural Reserve

The crested porcupine Hystrix cristata L. is a large rodent, which mainly occurs in agro-forestry ecosystems in Italy. In this study, we modelled the occupancy of this species in forest ecosystems, to identify environmental characteristics affecting its presence. The study was conducted at Lago di Vico Natural Reserve (Latium, Central Italy) in 2018–2019. The sampling design included a 1 km2 grid, where 263 detections were recorded at 39 out of 57 camera-trap points. Dendroauxometric data were collected at each site as covariates in the statistical models. According to our best occupancy model, the crested porcupine mostly occurs in habitats not totally covered by forests, but composed by mixed landscape patches both for the land use (crops, woods) and for the coverage (forested areas, open areas, bushes). We also analysed activity rhythms of the crested porcupine across seasons and in relation to the moon phases. The analysis of 543 videos showed that crested porcupine is strictly nocturnal throughout the year and avoided bright nights, despite the local absence of potential predators.

Blessing the rains down in Africa: spatiotemporal behaviour of the crested porcupine

The assessment of habitat selection and temporal patterns of activity rhythms is paramount for wildlife conservation. Studies on behavioural ecology of wild mammals are particularly challenging in tropical areas, mostly when involving rare or elusive species. Despite being a common species in Italy, the crested porcupine Hystrix cristata is threatened of extinction throughout most of its sub-Saharan range. All available information on the ecology of this species has been collected in Italy, whereas no data is present in the scientific literature on spatiotemporal behaviour of this large rodent in Africa. In this work, we attempted to determine habitat selection and temporal patterns of activity rhythms of the crested porcupine in northern Benin and neighbouring countries, through intensive camera-trapping. We collected a total of 146 records of crested porcupine, 91 in the dry season (October-March) and 55 in the rainy season (April-September). Porcupines used most habitats in proportion to their local availability, while selecting rock outcrop formations (possibly used as shelter sites) and avoiding open areas, wetlands and gallery forests. A mostly nocturnal behaviour was confirmed throughout the year, with some diurnal activity at the start and at the end of the rainy season. The importance of rains in determining birth peak has been also showed, with juvenile individuals always observed at the start and at the end of the rainy season. Full moon always inhibited activity of this large rodent, most likely evolved as an antipredatory behaviour to limit encounters with potential predators (common leopard Panthera pardus, spotted hyaena Crocuta crocuta and honey badger Mellivora capensis) and humans. Poaching pressure towards porcupines in West Africa is strong. Porcupines are killed for the traditional medicine, for their meat and because they are widely considered as a crop pest. This assessment should therefore be used as a basic tool to design conservation plans to preserve this rodent species in its native range.

Patterns of activity rhythms of invasive coypus Myocastor coypus inferred through camera-trapping

Studies on activity rhythms are pivotal for the management of invasive alien species, as they provide basic insights into species basic ecology and may increase the success of control programs. The coypu Myocastor coypus, introduced from South America for fur farms, has become one of the most invasive rodents in Europe. Introduced coypus may affect crop productions, as well as natural vegetation and the breeding success of wading birds. In this study, we examined activity data collected through intensive camera-trapping in three Italian areas, including two natural areas in Northern and Central Italy, and a suburban area in Central Italy. Coypus were mostly diurnal in areas characterised by low predator pressure and, at night, they are mostly active in bright moonlight. Conversely, where predators, human pressure or numerical control programmes are present, coypus remarkably shift their behaviour towards crepuscular and night hours. In these last areas, nocturnal activity increased as moonlight decreased, possibly to reduce predation risk or encounters with humans. Where winter temperature are low, diurnal habits may have developed as a physiological adaptation and a strategy to preserve energy, potentially achieving a cost/effective thermal balance.