1
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Pardoux R, Sauge-Merle S, Bremond N, Beccia MR, Lemaire D, Battesti C, Delangle P, Solari PL, Guilbaud P, Berthomieu C. Optimized Coordination of Uranyl in Engineered Calmodulin Site 1 Provides a Subnanomolar Affinity for Uranyl and a Strong Uranyl versus Calcium Selectivity. Inorg Chem 2022; 61:20480-20492. [DOI: 10.1021/acs.inorgchem.2c03185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Romain Pardoux
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Sandrine Sauge-Merle
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Nicolas Bremond
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Maria Rosa Beccia
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - David Lemaire
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Christine Battesti
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
| | - Pascale Delangle
- Univ. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000Grenoble, France
| | - Pier Lorenzo Solari
- MARS beamline, Synchrotron SOLEIL, L’Orme des Merisiers, Saint-Aubin, 91192Gif-sur-Yvette Cedex, France
| | | | - Catherine Berthomieu
- Aix Marseille Univ, CEA, CNRS, UMR 7265, BIAM, Interactions Protéine Métal, 13108Saint Paul-Lez-Durance, France
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2
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Inter-Site Cooperativity of Calmodulin N-Terminal Domain and Phosphorylation Synergistically Improve the Affinity and Selectivity for Uranyl. Biomolecules 2022; 12:biom12111703. [DOI: 10.3390/biom12111703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/10/2022] [Accepted: 11/12/2022] [Indexed: 11/19/2022] Open
Abstract
Uranyl–protein interactions participate in uranyl trafficking or toxicity to cells. In addition to their qualitative identification, thermodynamic data are needed to predict predominant mechanisms that they mediate in vivo. We previously showed that uranyl can substitute calcium at the canonical EF-hand binding motif of calmodulin (CaM) site I. Here, we investigate thermodynamic properties of uranyl interaction with site II and with the whole CaM N-terminal domain by spectrofluorimetry and ITC. Site II has an affinity for uranyl about 10 times lower than site I. Uranyl binding at site I is exothermic with a large enthalpic contribution, while for site II, the enthalpic contribution to the Gibbs free energy of binding is about 10 times lower than the entropic term. For the N–terminal domain, macroscopic binding constants for uranyl are two to three orders of magnitude higher than for calcium. A positive cooperative process driven by entropy increases the second uranyl-binding event as compared with the first one, with ΔΔG = −2.0 ± 0.4 kJ mol−1, vs. ΔΔG = −6.1 ± 0.1 kJ mol−1 for calcium. Site I phosphorylation largely increases both site I and site II affinity for uranyl and uranyl-binding cooperativity. Combining site I phosphorylation and site II Thr7Trp mutation leads to picomolar dissociation constants Kd1 = 1.7 ± 0.3 pM and Kd2 = 196 ± 21 pM at pH 7. A structural model obtained by MD simulations suggests a structural role of site I phosphorylation in the affinity modulation.
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3
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Tsushima S, Takao K. Hydrophobic core formation and secondary structure elements in uranyl(VI)-binding peptides. Phys Chem Chem Phys 2022; 24:4455-4461. [PMID: 35113097 DOI: 10.1039/d1cp05401e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Cyclic peptides as well as a modified EF-hand motif of calmodulin have been newly designed to achieve high affinity towards uranyl(VI). Cyclic peptides may be engineered to bind uranyl(VI) to its backbone under acidic conditions, which may enhance its selectivity. For the modified EF-hand motif of calmodulin, strong electrostatic interactions between uranyl(VI) and negatively charged side chains play an important role in achieving high affinity; however, it is also essential to have a secondary structure element and formation of hydrophobic cores in the metal-bound state of the peptide.
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Affiliation(s)
- Satoru Tsushima
- Institute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf (HZDR), 01328, Dresden, Germany. .,World Research Hub Initiative (WRHI), Institute of Innovative Research, Tokyo Institute of Technology, 152-8550 Tokyo, Japan
| | - Koichiro Takao
- Laboratory for Zero-Carbon Energy, Institute of Innovative Research, Tokyo Institute of Technology, 152-8550 Tokyo, Japan
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4
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Lin YW. Uranyl Binding to Proteins and Structural-Functional Impacts. Biomolecules 2020; 10:biom10030457. [PMID: 32187982 PMCID: PMC7175365 DOI: 10.3390/biom10030457] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Revised: 03/08/2020] [Accepted: 03/13/2020] [Indexed: 01/29/2023] Open
Abstract
The widespread use of uranium for civilian purposes causes a worldwide concern of its threat to human health due to the long-lived radioactivity of uranium and the high toxicity of uranyl ion (UO22+). Although uranyl–protein/DNA interactions have been known for decades, fewer advances are made in understanding their structural-functional impacts. Instead of focusing only on the structural information, this article aims to review the recent advances in understanding the binding of uranyl to proteins in either potential, native, or artificial metal-binding sites, and the structural-functional impacts of uranyl–protein interactions, such as inducing conformational changes and disrupting protein-protein/DNA/ligand interactions. Photo-induced protein/DNA cleavages, as well as other impacts, are also highlighted. These advances shed light on the structure-function relationship of proteins, especially for metalloproteins, as impacted by uranyl–protein interactions. It is desired to seek approaches for biological remediation of uranyl ions, and ultimately make a full use of the double-edged sword of uranium.
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Affiliation(s)
- Ying-Wu Lin
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China; ; Tel.: +86-734-8578079
- Laboratory of Protein Structure and Function, University of South China, Hengyang 421001, China
- Hunan Key Laboratory for the Design and Application of Actinide Complexes, University of South China, Hengyang 421001, China
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5
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Garai A, Delangle P. Recent advances in uranyl binding in proteins thanks to biomimetic peptides. J Inorg Biochem 2019; 203:110936. [PMID: 31864150 DOI: 10.1016/j.jinorgbio.2019.110936] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2019] [Revised: 11/05/2019] [Accepted: 11/17/2019] [Indexed: 12/29/2022]
Abstract
Uranium is an element belonging to the actinide series. It is ubiquitous in rock, soil, and water. Uranium is found in the ecosystem due to mining and milling industrial activities and processing to nuclear fuel, but also to the extensive use of phosphate fertilizers. Understanding uranium binding in vivo is critical, first to deepen our knowledge of molecular events leading to chemical toxicity, but also to provide new mechanistic information useful for the development of efficient decorporation treatments to be applied in case of intoxication. The most stable form in physiological conditions is the uranyl cation (UO22+), in which uranium oxidation state is +VI. This short review presents uranyl coordination properties and chelation, and what is currently known about uranium binding to proteins. Although several target proteins have been identified, the UO22+ binding sites have barely been identified. Biomimetic approaches using model peptides are good options to shed light on high affinity uranyl binding sites in proteins. A strategy based on constrained cyclodecapeptides allowed recently to propose a tetraphosphate binding site for uranyl that provides an affinity similar to the one measured with the phosphoprotein osteopontin.
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Affiliation(s)
- Aditya Garai
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, SyMMES, F-38000 Grenoble, France
| | - Pascale Delangle
- Univ. Grenoble Alpes, CEA, CNRS, IRIG, SyMMES, F-38000 Grenoble, France.
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6
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Creff G, Zurita C, Jeanson A, Carle G, Vidaud C, Den Auwer C. What do we know about actinides-proteins interactions? RADIOCHIM ACTA 2019. [DOI: 10.1515/ract-2019-3120] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Abstract
Since the early 40s when the first research related to the development of the atomic bomb began for the Manhattan Project, actinides (An) and their association with the use of nuclear energy for civil applications, such as in the generation of electricity, have been a constant source of interest and fear. In 1962, the first Society of Toxicology (SOT), led by H. Hodge, was established at the University of Rochester (USA). It was commissioned as part of the Manhattan Project to assess the impact of nuclear weapons production on workers’ health. As a result of this initiative, the retention and excretion rates of radioactive heavy metals, their physiological impact in the event of acute exposure and their main biological targets were assessed. In this context, the scientific community began to focus on the role of proteins in the transportation and in vivo accumulation of An. The first studies focused on the identification of these proteins. Thereafter, the continuous development of physico-chemical characterization techniques has made it possible to go further and specify the modes of interaction with proteins from both a thermodynamic and structural point of view, as well as from the point of view of their biological activity. This article reviews the work performed in this area since the Manhattan Project. It is divided into three parts: first, the identification of the most affine proteins; second, the study of the affinity and structure of protein-An complexes; and third, the impact of actinide ligation on protein conformation and function.
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Affiliation(s)
- Gaëlle Creff
- Université Côte d’Azur, CNRS, UMR 7272, Institut de Chimie de Nice , 06108 Nice , France
| | - Cyril Zurita
- Université Côte d’Azur, CNRS, UMR 7272, Institut de Chimie de Nice , 06108 Nice , France
| | - Aurélie Jeanson
- Université Côte d’Azur, CNRS, UMR 7272, Institut de Chimie de Nice , 06108 Nice , France
| | - Georges Carle
- Université Côte d’Azur, CEA, UMR E-4320 TIRO-MATOs , 06100 Nice , France
| | - Claude Vidaud
- CEA DRF, CNRS, UMR 7265, Institut de Biosciences et Biotechnologies d’Aix-Marseille , 13108 Saint-Paul-lez-Durance , France
| | - Christophe Den Auwer
- Université Côte d’Azur, CNRS, UMR 7272, Institut de Chimie de Nice , 06108 Nice , France
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7
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Reeves B, Beccia MR, Solari PL, Smiles DE, Shuh DK, Berthomieu C, Marcellin D, Bremond N, Mangialajo L, Pagnotta S, Monfort M, Moulin C, Den Auwer C. Uranium Uptake in Paracentrotus lividus Sea Urchin, Accumulation and Speciation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:7974-7983. [PMID: 31187628 DOI: 10.1021/acs.est.8b06380] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Uranium speciation and bioaccumulation were investigated in the sea urchin Paracentrotus lividus. Through accumulation experiments in a well-controlled aquarium followed by ICP-OES analysis, the quantification of uranium in the different compartments of the sea urchin was performed. Uranium is mainly distributed in the test (skeletal components), as it is the major constituent of the sea urchin, but in terms of quantity of uranium per gram of compartment, the following rating: intestinal tract > gonads ≫ test, was obtained. Combining both extended X-ray Absorption Spectroscopy and time-resolved laser-induced fluorescence spectroscopic analysis, it was possible to identify two different forms of uranium in the sea urchin, one in the test, as a carbonato-calcium complex, and the second one in the gonads and intestinal tract, as a protein complex. Toposome is a major calcium-binding transferrin-like protein contained within the sea urchin. EXAFS data fitting of both contaminated organs in vivo and the uranium-toposome complex from protein purified out of the gonads revealed that it is suspected to complex uranium in gonads and intestinal tract. This hypothesis is also supported by the results from two imaging techniques, i.e., Transmission Electron Microscopy and Scanning Transmission X-ray Microscopy. This thorough investigation of uranium uptake in sea urchin is one of the few attempts to assess the speciation in a living marine organism in vivo.
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Affiliation(s)
- Benjamin Reeves
- Université Côte d'Azur , CNRS, Institut de Chimie de Nice, UMR 7272 , 06108 Nice , France
- CEA, DAM, DIF , F-92297 Arpajon , France
| | - Maria Rosa Beccia
- Université Côte d'Azur , CNRS, Institut de Chimie de Nice, UMR 7272 , 06108 Nice , France
| | - Pier Lorenzo Solari
- Synchrotron Soleil, L'Orme des Merisiers , Saint-Aubin, BP 48 , F-91192 Gif-sur-Yvette Cedex , France
| | - Danil E Smiles
- Chemical Sciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | - David K Shuh
- Chemical Sciences Division , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | - Catherine Berthomieu
- CEA, CNRS , Aix Marseille Université , BIAM UMR7265, 13115 Saint Paul-Lez-Durance , France
| | - Didier Marcellin
- CEA, CNRS , Aix Marseille Université , BIAM UMR7265, 13115 Saint Paul-Lez-Durance , France
| | - Nicolas Bremond
- CEA, CNRS , Aix Marseille Université , BIAM UMR7265, 13115 Saint Paul-Lez-Durance , France
| | - Luisa Mangialajo
- Université Côte d'Azur , CNRS, UMR 7035 ECOSEAS , 06108 Nice , France
| | - Sophie Pagnotta
- Université Côte d'Azur , Centre Commun de Microscopie Appliquée , 06108 Nice , France
| | | | - Christophe Moulin
- Prime Minister Office, Secrétariat général de la défense et de la sécuritié nationale , 75007 Paris , France
| | - Christophe Den Auwer
- Université Côte d'Azur , CNRS, Institut de Chimie de Nice, UMR 7272 , 06108 Nice , France
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8
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Vidaud C, Robert M, Paredes E, Ortega R, Avazeri E, Jing L, Guigonis JM, Bresson C, Malard V. Deciphering the uranium target proteins in human dopaminergic SH-SY5Y cells. Arch Toxicol 2019; 93:2141-2154. [DOI: 10.1007/s00204-019-02497-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 06/17/2019] [Indexed: 12/11/2022]
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9
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Laporte FA, Lebrun C, Vidaud C, Delangle P. Phosphate-Rich Biomimetic Peptides Shed Light on High-Affinity Hyperphosphorylated Uranyl Binding Sites in Phosphoproteins. Chemistry 2019; 25:8570-8578. [PMID: 30908736 DOI: 10.1002/chem.201900646] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Indexed: 12/31/2022]
Abstract
Some phosphoproteins such as osteopontin (OPN) have been identified as high-affinity uranyl targets. However, the binding sites required for interaction with uranyl and therefore involved in its toxicity have not been identified in the whole protein. The biomimetic approach proposed here aimed to decipher the nature of these sites and should help to understand the role of the multiple phosphorylations in UO2 2+ binding. Two hyperphosphorylated cyclic peptides, pS168 and pS1368 containing up to four phosphoserine (pSer) residues over the ten amino acids present in the sequences, were synthesized with all reactions performed in the solid phase, including post-phosphorylation. These β-sheet-structured peptides present four coordinating residues from four amino acid side chains pointing to the metal ion, either three pSer and one glutamate in pS168 or four pSer in pS1368 . Significantly, increasing the number of pSer residues up to four in the cyclodecapeptide scaffolds produced molecules with an affinity constant for UO2 2+ that is as large as that reported for osteopontin at physiological pH. The phosphate-rich pS1368 can thus be considered a relevant model of UO2 2+ coordination in this intrinsically disordered protein, which wraps around the metal ion to gather four phosphate groups in the UO2 2+ coordination sphere. These model hyperphosphorylated peptides are highly selective for UO2 2+ with respect to endogenous Ca2+ , which makes them good starting structures for selective UO2 2+ complexation.
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Affiliation(s)
- Fanny A Laporte
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Colette Lebrun
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Claude Vidaud
- CEA, Fundamental Research Division, Biosciences and Biotechnologies Institute of Aix-Marseille, 30207, Bagnols sur Céze, France
| | - Pascale Delangle
- INAC SyMMES, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
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10
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Younes A, Creff G, Beccia MR, Moisy P, Roques J, Aupiais J, Hennig C, Solari PL, Den Auwer C, Vidaud C. Is hydroxypyridonate 3,4,3-LI(1,2-HOPO) a good competitor of fetuin for uranyl metabolism? Metallomics 2019; 11:496-507. [DOI: 10.1039/c8mt00272j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Identification of stable HOPO–UO22+–fetuin ternary complexes after a chromatographic separation process.
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Affiliation(s)
- Ali Younes
- CEA Marcoule
- Fundamental Research Division
- 30207 Bagnols sur Céze
- France
- Université Côte d'Azur
| | - Gaëlle Creff
- Université Côte d'Azur
- CNRS
- Institut de Chimie de Nice
- UMR7272
- 06108 Nice
| | - Maria Rosa Beccia
- Université Côte d'Azur
- CNRS
- Institut de Chimie de Nice
- UMR7272
- 06108 Nice
| | - Philippe Moisy
- CEA Marcoule
- Nuclear Energy Division
- 30207 Bagnols dur Cèze Cedex
- France
| | | | | | - Christoph Hennig
- HZDR
- Institute of Resource Ecology
- 01314 Dresden
- Germany and Rossendorf Beamline
- ESRF
| | - Pier Lorenzo Solari
- Synchrotron SOLEIL L’Orme des Merisiers
- Saint-Aubin
- F-91192 Gif-sur-Yvette Cedex
- France
| | | | - Claude Vidaud
- CEA Marcoule
- Fundamental Research Division
- 30207 Bagnols sur Céze
- France
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11
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Barkleit A, Hennig C, Ikeda-Ohno A. Interaction of Uranium(VI) with α-Amylase and Its Implication for Enzyme Activity. Chem Res Toxicol 2018; 31:1032-1041. [DOI: 10.1021/acs.chemrestox.8b00106] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Astrid Barkleit
- Helmholtz-Zentrum Dresden - Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Christoph Hennig
- Helmholtz-Zentrum Dresden - Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany
| | - Atsushi Ikeda-Ohno
- Helmholtz-Zentrum Dresden - Rossendorf, Institute of Resource Ecology, Bautzner Landstraße 400, 01328 Dresden, Germany
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12
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Carugo O. Structural features of uranium-protein complexes. J Inorg Biochem 2018; 189:1-6. [PMID: 30149122 DOI: 10.1016/j.jinorgbio.2018.08.014] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 06/19/2018] [Accepted: 08/16/2018] [Indexed: 02/06/2023]
Abstract
Uranium toxicity depends on its chemical properties rather than on its radioactivity and involves its interaction with macromolecules. Here, a systematic survey of the structural features of the uranyl sites observed in protein crystal structures deposited in the Protein Data Bank is reported. Beside the two uranyl oxygens, which occupy the axial positions, uranium tends to be coordinated by five other oxygen atoms, which occupy the equatorial vertices of a pentagonal bipyramid. Even if one or more of these equatorial positions are sometime empty, they can be occupied only by oxygen atoms that belong to the carboxylate groups of Glu and Asp side-chains, usually acting as monodentate ligands, to water molecules, or to acetate anions. Although several uranium sites appear undefined or unrefined, with a single uranium atom that lacks the two uranyl oxygen atoms, this problem seems to become less frequent in recent years. However, it is clear that the crystallographic refinements of the uranyl sites are not always well restrained and a better parametrization of these restraints seems to be necessary.
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Affiliation(s)
- Oliviero Carugo
- Chemistry Department, University of Pavia, Italy; Department of Structural and Computational Biology, University of Vienna, Austria.
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13
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Sauge-Merle S, Brulfert F, Pardoux R, Solari PL, Lemaire D, Safi S, Guilbaud P, Simoni E, Merroun ML, Berthomieu C. Structural Analysis of Uranyl Complexation by the EF-Hand Motif of Calmodulin: Effect of Phosphorylation. Chemistry 2017; 23:15505-15517. [DOI: 10.1002/chem.201703484] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Indexed: 01/03/2023]
Affiliation(s)
- Sandrine Sauge-Merle
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Florian Brulfert
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Romain Pardoux
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Pier Lorenzo Solari
- MARS beamline; Synchrotron SOLEIL; L'Orme des Merisiers, Saint-Aubin; 91192 Gif-sur-Yvette Cedex France
| | - David Lemaire
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
| | - Samir Safi
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | - Philippe Guilbaud
- CEA, Nuclear Energy Division; Research Department on Mining and fuel Recycling Processes (LILA); BP17171 30207 Bagnols-sur-Cèze France
| | - Eric Simoni
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3; Univ. Paris-Sud, Univ. Paris-Saclay; 91405 Orsay France
| | | | - Catherine Berthomieu
- CEA; CNRS; Aix-Marseille Université; UMR 7265 Biologie Végétale et Microbiologie Environnementales; Laboratoire des Interactions Protéine Métal; 13108 Saint-Paul-lez-Durance France
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14
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Repurposing proteins for new bioinorganic functions. Essays Biochem 2017; 61:245-258. [DOI: 10.1042/ebc20160068] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 01/17/2017] [Accepted: 01/23/2017] [Indexed: 02/06/2023]
Abstract
Inspired by the remarkable sophistication and complexity of natural metalloproteins, the field of protein design and engineering has traditionally sought to understand and recapitulate the design principles that underlie the interplay between metals and protein scaffolds. Yet, some recent efforts in the field demonstrate that it is possible to create new metalloproteins with structural, functional and physico-chemical properties that transcend evolutionary boundaries. This essay aims to highlight some of these efforts and draw attention to the ever-expanding scope of bioinorganic chemistry and its new connections to synthetic biology, biotechnology, supramolecular chemistry and materials engineering.
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15
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Starck M, Laporte FA, Oros S, Sisommay N, Gathu V, Solari PL, Creff G, Roques J, Den Auwer C, Lebrun C, Delangle P. Cyclic Phosphopeptides to Rationalize the Role of Phosphoamino Acids in Uranyl Binding to Biological Targets. Chemistry 2017; 23:5281-5290. [PMID: 28164389 DOI: 10.1002/chem.201605481] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Indexed: 12/24/2022]
Abstract
The specific molecular interactions responsible for uranium toxicity are not yet understood. The uranyl binding sites in high-affinity target proteins have not been identified yet and the involvement of phosphoamino acids is still an important question. Short cyclic peptide sequences, with three glutamic acids and one phosphoamino acid, are used as simple models to mimic metal binding sites in phosphoproteins and to help understand the mechanisms involved in uranium toxicity. A combination of peptide design and synthesis, analytical chemistry, extended X-ray absorption fine structure (EXAFS) spectroscopy, and DFT calculations demonstrates the involvement of the phosphate group in the uranyl coordination sphere together with the three carboxylates of the glutamate moieties. The affinity constants measured with a reliable analytical competitive approach at physiological pH are significantly enhanced owing to the presence of the phosphorous moiety. These findings corroborate the importance of phosphoamino acids in uranyl binding in proteins and the relevance of considering phosphoproteins as potential uranyl targets in vivo.
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Affiliation(s)
- Matthieu Starck
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Fanny A Laporte
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Stephane Oros
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Nathalie Sisommay
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Vicky Gathu
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Pier Lorenzo Solari
- Synchrotron SOLEIL, L'orme des Merisiers, Saint-Aubin, 91192, Gif-sur-Yvette, France
| | - Gaëlle Creff
- Institut de Chimie de Nice, UMR7272, Université Côte d'Azur, 06108, Nice, France
| | - Jérôme Roques
- Institut de Physique Nucléaire d'Orsay, CNRS-IN2P3, Univ. Paris-Sud, Université Paris-Saclay, France
| | - Christophe Den Auwer
- Institut de Chimie de Nice, UMR7272, Université Côte d'Azur, 06108, Nice, France
| | - Colette Lebrun
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
| | - Pascale Delangle
- INAC/SyMMES, UMR5819, Université Grenoble Alpes, CEA, CNRS, 38000, Grenoble, France
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16
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Wang M, Ding W, Wang D. Binding mechanism of uranyl to transferrin implicated by density functional theory study. RSC Adv 2017. [DOI: 10.1039/c6ra26109d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
The binding of uranyl to serum transferrin follows a Tyr* → Tyr* → Asp* stepwise mechanism.
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Affiliation(s)
- Meng Wang
- Key Laboratory of Theoretical and Computational Photochemistry
- Ministry of Education
- College of Chemistry
- Beijing Normal University
- Beijing 100875
| | - Wanjian Ding
- Key Laboratory of Theoretical and Computational Photochemistry
- Ministry of Education
- College of Chemistry
- Beijing Normal University
- Beijing 100875
| | - Dongqi Wang
- CAS Key Laboratory of Nuclear Radiation and Nuclear Energy Techniques
- Institute of High Energy Physics
- Chinese Academy of Sciences
- Beijing 100049
- China
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17
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Starck M, Sisommay N, Laporte FA, Oros S, Lebrun C, Delangle P. Preorganized Peptide Scaffolds as Mimics of Phosphorylated Proteins Binding Sites with a High Affinity for Uranyl. Inorg Chem 2015; 54:11557-62. [PMID: 26583259 DOI: 10.1021/acs.inorgchem.5b02249] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Cyclic peptides with two phosphoserines and two glutamic acids were developed to mimic high-affinity binding sites for uranyl found in proteins such as osteopontin, which is believed to be a privileged target of this ion in vivo. These peptides adopt a β-sheet structure that allows the coordination of the latter amino acid side chains in the equatorial plane of the dioxo uranyl cation. Complementary spectroscopic and analytical methods revealed that these cyclic peptides are efficient uranyl chelating peptides with a large contribution from the phosphorylated residues. The conditional affinity constants were measured by following fluorescence tryptophan quenching and are larger than 10(10) at physiological pH. These compounds are therefore promising models for understanding uranyl chelation by proteins, which is relevant to this actinide ion toxicity.
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Affiliation(s)
- Matthieu Starck
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Nathalie Sisommay
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Fanny A Laporte
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Stéphane Oros
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Colette Lebrun
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
| | - Pascale Delangle
- Université Grenoble Alpes , INAC-SCIB, F-38000 Grenoble, France.,CEA , INAC-SCIB, F-38000 Grenoble, France
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18
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Zhang D, Chen Z, Omar H, Deng L, Khashab NM. Colorimetric peroxidase mimetic assay for uranyl detection in sea water. ACS APPLIED MATERIALS & INTERFACES 2015; 7:4589-4594. [PMID: 25658750 DOI: 10.1021/am507361x] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Uranyl (UO2(2+)) is a form of uranium in aqueous solution that represents the greatest risk to human health because of its bioavailability. Different sensing techniques have been used with very sensitive detection limits especially the recently reported uranyl-specific DNAzymes systems. However, to the best of our knowledge, few efficient detection methods have been reported for uranyl sensing in seawater. Herein, gold nanoclusters (AuNCs) are employed in an efficient spectroscopic method to detect uranyl ion (UO2(2+)) with a detection limit of 1.86 μM. In the absence of UO2(2+), the BSA-stabilized AuNCs (BSA-AuNCs) showed an intrinsic peroxidase-like activity. In the presence of UO2(2+), this activity can be efficiently restrained. The preliminary quenching mechanism and selectivity of UO2(2+) was also investigated and compared with other ions. This design strategy could be useful in understanding the binding affinity of protein-stabilized AuNCs to UO2(2+) and consequently prompt the recycling of UO2(2+) from seawater.
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Affiliation(s)
- Dingyuan Zhang
- Controlled Release and Delivery Lab, Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology , Thuwal 23955-6900, Kingdom of Saudi Arabia
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19
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Odoh SO, Bondarevsky GD, Karpus J, Cui Q, He C, Spezia R, Gagliardi L. UO22+ Uptake by Proteins: Understanding the Binding Features of the Super Uranyl Binding Protein and Design of a Protein with Higher Affinity. J Am Chem Soc 2014; 136:17484-94. [DOI: 10.1021/ja5087563] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Samuel O. Odoh
- Department
of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Gary D. Bondarevsky
- Department
of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Jason Karpus
- Department
of Chemistry and Institute of Biophysical Dynamics, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, United States
| | - Qiang Cui
- Department
of Chemistry, University of Wisconsin—Madison, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Chuan He
- Department
of Chemistry and Institute of Biophysical Dynamics, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, United States
| | - Riccardo Spezia
- CNRS,
Laboratoire Analyse et Modélisation pour la Biologie et l’Environnement,
UMR 8587, Université d’Evry-Val-d’Essonne, 91025, Every Cedex, France
| | - Laura Gagliardi
- Department
of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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20
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Lebrun C, Starck M, Gathu V, Chenavier Y, Delangle P. Engineering Short Peptide Sequences for Uranyl Binding. Chemistry 2014; 20:16566-73. [DOI: 10.1002/chem.201404546] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Indexed: 01/16/2023]
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21
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Qi L, Basset C, Averseng O, Quéméneur E, Hagège A, Vidaud C. Characterization of UO2(2+) binding to osteopontin, a highly phosphorylated protein: insights into potential mechanisms of uranyl accumulation in bones. Metallomics 2014; 6:166-76. [PMID: 24327307 DOI: 10.1039/c3mt00269a] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Bones are one of the few organs in which uranyl (UO2(2+)) accumulates. This large dioxo-cation displays affinity for carboxylates, phenolates and phosphorylated functional groups in proteins. The noncollagenous protein osteopontin (OPN) plays an important role in bone homeostasis. It is mainly found in the extracellular matrix of mineralized tissues but also in body fluids such as milk, blood and urine. Furthermore, OPN is an intrinsically disordered protein, which, like other proteins of the SIBLING family, contains a polyaspartic acid sequence and numerous patterns of alternating acidic and phosphorylated residues. All these properties led to the hypothesis that this protein could be prone to UO2(2+) binding. In this work, a simple purification procedure enabling highly purified bovine (bOPN) and human OPN (hOPN) to be obtained was developed. Various biophysical approaches were set up to study the impact of phosphorylations on the affinity of OPN for UO2(2+) as well as the formation of stable complexes originating from structural changes induced by the binding of this metal cation. The results obtained suggest a new mechanism of the interaction of UO2(2+) with bone metabolism and a new role for OPN as a metal transporter.
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Affiliation(s)
- Lei Qi
- CEA/DSV/iBEB/SBTN, Laboratoire d'Etude des Protéines Cibles, BP 17171, 30207 Bagnols sur Cèze Cédex, France.
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22
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Zhou L, Bosscher M, Zhang C, Özçubukçu S, Zhang L, Zhang W, Li CJ, Liu J, Jensen MP, Lai L, He C. A protein engineered to bind uranyl selectively and with femtomolar affinity. Nat Chem 2014; 6:236-41. [DOI: 10.1038/nchem.1856] [Citation(s) in RCA: 212] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Accepted: 12/17/2013] [Indexed: 12/24/2022]
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23
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Sun MH, Liu SQ, Du KJ, Nie CM, Lin YW. A spectroscopic study of uranyl-cytochrome b5/cytochrome c interactions. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2014; 118:130-137. [PMID: 24051281 DOI: 10.1016/j.saa.2013.08.112] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2013] [Revised: 08/28/2013] [Accepted: 08/28/2013] [Indexed: 06/02/2023]
Abstract
Uranium is harmful to human health due to its radiation damage and the ability of uranyl ion (UO2(2+)) to interact with various proteins and disturb their biological functions. Cytochrome b5 (cyt b5) is a highly negatively charged heme protein and plays a key role in mediating cytochrome c (cyt c) signaling in apoptosis by forming a dynamic cyt b5-cyt c complex. In previous molecular modeling study in combination with UV-Vis studies, we found that UO2(2+) is capable of binding to cyt b5 at surface residues, Glu37 and Glu43. In this study, we further investigated the structural consequences of cyt b5 and cyt c, as well as cyt b5-cyt c complex, upon uranyl binding, by fluorescence spectroscopic and circular dichroism techniques. Moreover, we proposed a uranyl binding site for cyt c at surface residues, Glu66 and Glu69, by performing a molecular modeling study. It was shown that uranyl binds to cyt b5 (KD=10 μM), cyt c (KD=87 μM), and cyt b5-cyt c complex (KD=30 μM) with a different affinity, which slightly alters the protein conformation and disturbs the interaction of cyt b5-cyt c complex. Additionally, we investigated the functional consequences of uranyl binding to the protein surface, which decreases the inherent peroxidase activity of cyt c. The information of uranyl-cyt b5/cyt c interactions gained in this study likely provides a clue for the mechanism of uranyl toxicity.
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Affiliation(s)
- Mei-Hui Sun
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China
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24
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Kerisit S, Liu C. Structure, Kinetics, and Thermodynamics of the Aqueous Uranyl(VI) Cation. J Phys Chem A 2013; 117:6421-32. [DOI: 10.1021/jp404594p] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Sebastien Kerisit
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington
99352, United States
| | - Chongxuan Liu
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington
99352, United States
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25
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Xu M, Frelon S, Simon O, Lobinski R, Mounicou S. Non-denaturating isoelectric focusing gel electrophoresis for uranium–protein complexes quantitative analysis with LA-ICP MS. Anal Bioanal Chem 2013; 406:1063-72. [DOI: 10.1007/s00216-013-7033-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2013] [Revised: 04/24/2013] [Accepted: 04/26/2013] [Indexed: 01/09/2023]
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26
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Pardoux R, Sauge-Merle S, Lemaire D, Delangle P, Guilloreau L, Adriano JM, Berthomieu C. Modulating uranium binding affinity in engineered calmodulin EF-hand peptides: effect of phosphorylation. PLoS One 2012; 7:e41922. [PMID: 22870263 PMCID: PMC3411679 DOI: 10.1371/journal.pone.0041922] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2012] [Accepted: 06/29/2012] [Indexed: 12/21/2022] Open
Abstract
To improve our understanding of uranium toxicity, the determinants of uranyl affinity in proteins must be better characterized. In this work, we analyzed the contribution of a phosphoryl group on uranium binding affinity in a protein binding site, using the site 1 EF-hand motif of calmodulin. The recombinant domain 1 of calmodulin from A. thaliana was engineered to impair metal binding at site 2 and was used as a structured template. Threonine at position 9 of the loop was phosphorylated in vitro, using the recombinant catalytic subunit of protein kinase CK2. Hence, the T9TKE12 sequence was substituted by the CK2 recognition sequence TAAE. A tyrosine was introduced at position 7, so that uranyl and calcium binding affinities could be determined by following tyrosine fluorescence. Phosphorylation was characterized by ESI-MS spectrometry, and the phosphorylated peptide was purified to homogeneity using ion-exchange chromatography. The binding constants for uranyl were determined by competition experiments with iminodiacetate. At pH 6, phosphorylation increased the affinity for uranyl by a factor of ∼5, from Kd = 25±6 nM to Kd = 5±1 nM. The phosphorylated peptide exhibited a much larger affinity at pH 7, with a dissociation constant in the subnanomolar range (Kd = 0.25±0.06 nM). FTIR analyses showed that the phosphothreonine side chain is partly protonated at pH 6, while it is fully deprotonated at pH 7. Moreover, formation of the uranyl-peptide complex at pH 7 resulted in significant frequency shifts of the νas(P-O) and νs(P-O) IR modes of phosphothreonine, supporting its direct interaction with uranyl. Accordingly, a bathochromic shift in νas(UO2)2+ vibration (from 923 cm−1 to 908 cm−1) was observed upon uranyl coordination to the phosphorylated peptide. Together, our data demonstrate that the phosphoryl group plays a determining role in uranyl binding affinity to proteins at physiological pH.
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Affiliation(s)
- Romain Pardoux
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Sandrine Sauge-Merle
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - David Lemaire
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Pascale Delangle
- CEA, INAC, Service de Chimie Inorganique et Biologique (UMR_E 3 CEA UJF), Grenoble, France
| | - Luc Guilloreau
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
| | - Jean-Marc Adriano
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
- CEA, DSV IBEB, Laboratoire de Bioénergétique et Biotechnologie des Bactéries et Microalgues, Saint Paul-lez-Durance, France
| | - Catherine Berthomieu
- CEA, DSV IBEB, Laboratoire des Interactions Protéine-Métal, Saint-Paul-lez-Durance, France
- CNRS, UMR Biologie Végétale et Microbiologie Environnementale, Saint-Paul-lez-Durance, France
- Université d’Aix-Marseille, Saint-Paul-lez-Durance, France
- * E-mail:
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27
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Lin YW, Nie CM, Liao LF. Insights into Uranyl Ion Binding to Ubiquitin from Molecular Modeling and Dynamics Simulations. CHEM LETT 2011. [DOI: 10.1246/cl.2011.1330] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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28
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Probing interactions between uranyl ions and lipid membrane by molecular dynamics simulation. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.08.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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29
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Bühl M, Wipff G. Insights into Uranyl Chemistry from Molecular Dynamics Simulations. Chemphyschem 2011; 12:3095-105. [DOI: 10.1002/cphc.201100458] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2011] [Revised: 07/28/2011] [Indexed: 11/10/2022]
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30
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Wan D, Liao LF, Zhao MM, Wu ML, Wu YM, Lin YW. Interactions of uranyl ion with cytochrome b 5 and its His39Ser variant as revealed by molecular simulation in combination with experimental methods. J Mol Model 2011; 18:1009-13. [DOI: 10.1007/s00894-011-1097-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2010] [Accepted: 03/22/2011] [Indexed: 11/24/2022]
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31
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Pible O, Vidaud C, Plantevin S, Pellequer JL, Quéméneur E. Predicting the disruption by UO2(2+) of a protein-ligand interaction. Protein Sci 2010; 19:2219-30. [PMID: 20842713 PMCID: PMC3005792 DOI: 10.1002/pro.501] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2010] [Revised: 08/30/2010] [Accepted: 09/04/2010] [Indexed: 01/27/2023]
Abstract
The uranyl cation (UO(2) (2+)) can be suspected to interfere with the binding of essential metal cations to proteins, underlying some mechanisms of toxicity. A dedicated computational screen was used to identify UO(2) (2+) binding sites within a set of nonredundant protein structures. The list of potential targets was compared to data from a small molecules interaction database to pinpoint specific examples where UO(2) (2+) should be able to bind in the vicinity of an essential cation, and would be likely to affect the function of the corresponding protein. The C-reactive protein appeared as an interesting hit since its structure involves critical calcium ions in the binding of phosphorylcholine. Biochemical experiments confirmed the predicted binding site for UO(2) (2+) and it was demonstrated by surface plasmon resonance assays that UO(2) (2+) binding to CRP prevents the calcium-mediated binding of phosphorylcholine. Strikingly, the apparent affinity of UO(2) (2+) for native CRP was almost 100-fold higher than that of Ca(2+). This result exemplifies in the case of CRP the capability of our computational tool to predict effective binding sites for UO(2) (2+) in proteins and is a first evidence of calcium substitution by the uranyl cation in a native protein.
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Affiliation(s)
- Olivier Pible
- CEA Life Sciences Division, DSV, IBEB, SBTN, Bagnols-sur-Cèze, F-30207, France.
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32
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Chi Z, Liu R, Zhang H. Potential enzyme toxicity of oxytetracycline to catalase. THE SCIENCE OF THE TOTAL ENVIRONMENT 2010; 408:5399-5404. [PMID: 20800878 DOI: 10.1016/j.scitotenv.2010.08.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2010] [Revised: 08/02/2010] [Accepted: 08/03/2010] [Indexed: 05/29/2023]
Abstract
Oxytetracycline (OTC) is a kind of widely used veterinary drugs. The residue of OTC in the environment is potentially harmful. In the present work, the non-covalent toxic interaction of OTC with catalase was investigated by the fluorescence spectroscopy, UV-vis absorption and circular dichroism (CD) spectroscopy at physiological pH 7.4. OTC can interact with catalase to form a complex mainly by van der Waals' interactions and hydrogen bonds with one binding site. The association constants K were determined to be K(293K)=7.09×10(4)Lmol(-1) and K(311K)=3.31×10(4)Lmol(-1). The thermodynamic parameters (ΔH°, ΔG° and ΔS°) of the interaction were calculated. Based on the Förster theory of non-radiative energy transfer, the distance between bound OTC and the tryptophan residues of catalase was determined to be 6.48nm. The binding of OTC can result in change of the micro-environment of the tryptophan residues and the secondary structure of catalase. The activity of catalase was also inhibited for the bound OTC. This work establishes a new strategy to probe the enzyme toxicity of veterinary drug residues and is helpful for clarifying the molecular toxic mechanism of OTC in vivo. The established strategy can be used to investigate the potential enzyme toxicity of other small organic pollutants and drugs.
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Affiliation(s)
- Zhenxing Chi
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, 27# Shanda South Road,Jinan 250100, PR China
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33
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Benavides-Garcia MG, Balasubramanian K. Structural Insights into the Binding of Uranyl with Human Serum Protein Apotransferrin Structure and Spectra of Protein−Uranyl Interactions. Chem Res Toxicol 2009; 22:1613-21. [DOI: 10.1021/tx900184r] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Maria G. Benavides-Garcia
- Department of Natural Sciences, University of Houston—Downtown, Houston, Texas 77002, College of Science, California State University, East Bay, Hayward, California 94542, Chemistry and Material Science Directorate, Lawrence Livermore National Laboratory, Livermore, California 94550, and Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Krishnan Balasubramanian
- Department of Natural Sciences, University of Houston—Downtown, Houston, Texas 77002, College of Science, California State University, East Bay, Hayward, California 94542, Chemistry and Material Science Directorate, Lawrence Livermore National Laboratory, Livermore, California 94550, and Nuclear Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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34
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Synthesis, structure and optic properties of 2-methylimidazolium and 2-phenylimidazolium uranyl acetates. Inorganica Chim Acta 2009. [DOI: 10.1016/j.ica.2009.04.032] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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35
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Dedieu A, Bérenguer F, Basset C, Prat O, Quéméneur E, Pible O, Vidaud C. Identification of uranyl binding proteins from human kidney-2 cell extracts by immobilized uranyl affinity chromatography and mass spectrometry. J Chromatogr A 2009; 1216:5365-76. [PMID: 19501829 DOI: 10.1016/j.chroma.2009.05.023] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2009] [Revised: 05/06/2009] [Accepted: 05/11/2009] [Indexed: 11/17/2022]
Abstract
To improve our knowledge on protein targets of uranyl ion (UO(2)(2+)), we set up a proteomic strategy based on immobilized metal-affinity chromatography (IMAC). The successful enrichment of UO(2)(2+)-interacting proteins from human kidney-2 (HK-2) soluble cell extracts was obtained using an ion-exchange chromatography followed by a dedicated IMAC process previously described and designed for the uranyl ion. By mass spectrometry analysis we identified 64 proteins displaying varied functions. The use of a computational screening algorithm along with the particular ligand-based properties of the UO(2)(2+) ion allowed the analysis and categorization of the protein collection. This profitable approach demonstrated that most of these proteins fulfill criteria which could rationalize their binding to the UO(2)(2+)-loaded phase. The obtained results enable us to focus on some targets for more in-depth studies and open new insights on its toxicity mechanisms at molecular level.
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36
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Wegner SV, Boyaci H, Chen H, Jensen MP, He C. Engineering a uranyl-specific binding protein from NikR. Angew Chem Int Ed Engl 2009; 48:2339-41. [PMID: 19199314 DOI: 10.1002/anie.200805262] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A new pick-up line: The first uranyl-selective DNA-binding protein is designed using the E. coli nickel(II)-responsive protein NikR as the template. The resulting NikR' protein binds uranyl (see picture) with a dissociation constant K(d) = 53 nM and selectively binds to DNA in the presence of uranyl.
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Affiliation(s)
- Seraphine V Wegner
- Department of Chemistry, The University of Chicago, 929 East 57th Street, Chicago, IL 60637, USA
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Wegner S, Boyaci H, Chen H, Jensen M, He C. Engineering A Uranyl-Specific Binding Protein from NikR. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200805262] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Jeanson A, Berthon C, Coantic S, Den Auwer C, Floquet N, Funke H, Guillaneux D, Hennig C, Martinez J, Moisy P, Petit S, Proux O, Quémeneur E, Lorenzo Solari P, Subra G. The role of aspartyl-rich pentapeptides in comparative complexation of actinide(iv) and iron(iii). Part 1. NEW J CHEM 2009. [DOI: 10.1039/b813523a] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Deciphering the energy landscape of the interaction uranyl-DCP with antibodies using dynamic force spectroscopy. Biophys J 2008; 95:L63-5. [PMID: 18790844 DOI: 10.1529/biophysj.108.141937] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Previous studies on molecular recognition of uranyl-DCP (dicarboxy-phenanthroline chelator) compound by two distinct monoclonal antibodies (Mabs U04S and U08S) clearly showed the presence of a biphasic shape in Bell-Evans' plots and an accentuated difference in slopes at the high loading rates. To further explore the basis in the slope difference, we have performed complementary experiments using antibody PHE03S, raised against uranyl-DCP but, presenting a strong cross-reactivity toward the DCP chelator. This work allowed us to obtain a reallocation of the respective contributions of the metal ion itself and that of the chelator. Results led us to propose a 2D schematic model representing two energy barriers observed in the systems Mabs U04S- and U08S-[UO(2)-DCP] where the outer barrier characterizes the interaction between UO(2) and Mab whereas the inner barrier characterizes the interaction between DCP and Mab. Using dynamic force spectroscopy, it is thus possible to dissect molecular interactions during the unbinding between proteins and ligands.
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Chen FF, Tang YN, Wang SL, Gao HW. Binding of brilliant red compound to lysozyme: insights into the enzyme toxicity of water-soluble aromatic chemicals. Amino Acids 2008; 36:399-407. [DOI: 10.1007/s00726-008-0069-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2008] [Accepted: 03/18/2008] [Indexed: 10/22/2022]
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Odorico M, Teulon JM, Bessou T, Vidaud C, Bellanger L, Chen SWW, Quéméneur É, Parot P, Pellequer JL. Energy landscape of chelated uranyl: antibody interactions by dynamic force spectroscopy. Biophys J 2007; 93:645-54. [PMID: 17449661 PMCID: PMC1896262 DOI: 10.1529/biophysj.106.098129] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We used dynamic force spectroscopy (DFS) to explore the energy landscape of interactions between a chelated uranyl compound and a monoclonal antibody raised against the uranyl-dicarboxy-phenanthroline complex. We estimated the potential energy barrier widths and the relevant thermodynamic rate constants along the dissociation coordinate. Using atomic force microscopy, four different experimental setups with or without the uranyl ion in the chelate ligand, we have distinguished specific and nonspecific binding in the binding affinity of the uranyl compound to the antibody. The force loading rates for our system were measured from 15 to 26,400 pN/s. The results showed two regimes in the plot of the most probable unbinding force versus the logarithm of the loading rate, revealing the presence of two (at least) activation barriers. Analyses of DFS suggest parallel multivalent binding present in either regime. We have also built a molecular model for the variable fragment of the antibody and used computational graphics to dock the chelated uranyl ion into the binding pocket. The structural analysis led us to hypothesize that the two regimes originate from two interaction modes: the first one corresponds to an energy barrier with a very narrow width of 0.5 +/- 0.2 A, inferring dissociation of the uranyl ion from its first coordination shell (Asp residue); the second one with a broader energy barrier width (3.9 +/- 0.3 A) infers the entire chelate compound dissociated from the antibody. Our study highlights the sensitivity of DFS experiments to dissect protein-metal compound interactions.
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Affiliation(s)
- Michael Odorico
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Jean-Marie Teulon
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Thérèse Bessou
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Claude Vidaud
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Laurent Bellanger
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Shu-wen W. Chen
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Éric Quéméneur
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Pierre Parot
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
| | - Jean-Luc Pellequer
- CEA Valrhô, Direction des Science du Vivant/Institut de Biologie environnementale et Biotechnologie/Service de Biochimie et Toxicologie Nucléaire, BP 17171, 30207 Bagnols sur Cèze, France, and 13 Avenue de la Mayre, 30200 Bagnols sur Cèze, France
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Teulon JM, Odorico M, Chen SWW, Parot P, Pellequer JL. On molecular recognition of an uranyl chelate by monoclonal antibodies. J Mol Recognit 2007; 20:508-15. [DOI: 10.1002/jmr.854] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Ansoborlo E, Prat O, Moisy P, Den Auwer C, Guilbaud P, Carriere M, Gouget B, Duffield J, Doizi D, Vercouter T, Moulin C, Moulin V. Actinide speciation in relation to biological processes. Biochimie 2006; 88:1605-18. [PMID: 16996675 DOI: 10.1016/j.biochi.2006.06.011] [Citation(s) in RCA: 151] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2006] [Accepted: 06/26/2006] [Indexed: 11/21/2022]
Abstract
In case of accidental release of radionuclides into the environment, actinides represent a severe health risk to human beings following internal contamination (inhalation, ingestion or wound). For a better understanding of the actinide behaviour in man (in term of metabolism, retention, excretion) and in specific biological systems (organs, cells or biochemical pathways), it is of prime importance to have a good knowledge of the relevant actinide solution chemistry and biochemistry, in particular of the thermodynamic constants needed for computing actinide speciation. To a large extent, speciation governs bioavailability and toxicity of elements and has a significant impact on the mechanisms by which toxics accumulate in cell compartments and organs and by which elements are transferred and transported from cell to cell. From another viewpoint, speciation is the prerequisite for the design and success of potential decorporation therapies. The purpose of this review is to present the state of the art of actinide knowledge within biological media. It is also to discuss how actinide speciation can be determined or predicted and to highlight the areas where information is lacking with the aim to encourage new research efforts.
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Affiliation(s)
- Eric Ansoborlo
- CEA/DEN/DRCP/CETAMA, VRH-Marcoule, BP 17171, 30207 Bagnols sur Cèze, France.
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