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Kasai Y, Takagi S, Ota S, Ishii K, Takeshita T, Kawano S, Harayama S. Development of a CRISPR/Cas9-mediated gene-editing method to isolate a mutant of the unicellular green alga Parachlorella kessleri strain NIES-2152 with improved lipid productivity. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:36. [PMID: 38443960 PMCID: PMC10916037 DOI: 10.1186/s13068-024-02484-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 02/24/2024] [Indexed: 03/07/2024]
Abstract
BACKGROUND Previously, we isolated a mutant of Parachlorella kessleri named strain PK4 that accumulated higher concentrations of lipids than the wild-type strain. Resequencing of the PK4 genome identified mutations in three genes which may be associated with the high-lipid phenotype. The first gene, named CDMT1, encodes a protein with a calcium-dependent membrane association domain; the second gene, named DMAN1, encodes endo-1,4-β-mannanase, while the third gene, named AATPL1, encodes a plastidic ATP/ADP antiporter-like protein. RESULTS To determine which of these mutant genes are directly responsible for the phenotype of strain PK4, we delivered Cas9-gRNA ribonucleoproteins targeting each of the three genes into the wild-type cells by electroporation and successfully disrupted these three genes separately. The lipid productivity in the disruptants of CDMT1 and DMAN1 was similar to and lower than that in the wild-type strain, while the disruptants of AATPL1 exhibited > 30% higher lipid productivity than the wild-type strain under diurnal conditions. CONCLUSIONS We succeeded in improving the lipid productivity of P. kessleri by CRISPR/Cas9-mediated gene disruption of AATPL1. The effective gene-editing method established in this study will be useful to improve Parachlorella strains for industrial applications.
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Affiliation(s)
- Yuki Kasai
- Research and Development Initiative, Chuo University, Bunkyo-Ku, Tokyo, 112-8551, Japan.
- Department of Biological Science, Chuo University, Kasuga 1-13-27, Bunkyo-Ku, Tokyo, 112-8551, Japan.
| | - Satsuki Takagi
- Research and Development Initiative, Chuo University, Bunkyo-Ku, Tokyo, 112-8551, Japan
| | - Shuhei Ota
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
- Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Japan
| | - Kotaro Ishii
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
- Department of Radiation Measurement and Dose Assessment, National Institutes for Quantum Science and Technology, 4-9-1 Anagawa, Inage-Ku,, Chiba-Shi, 263-8555, Japan
| | - Tsuyoshi Takeshita
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
| | - Shigeyuki Kawano
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
| | - Shigeaki Harayama
- Research and Development Initiative, Chuo University, Bunkyo-Ku, Tokyo, 112-8551, Japan
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Elshobary ME, Zabed HM, Qi X, El-Shenody RA. Enhancing biomass and lipid productivity of a green microalga Parachlorella kessleri for biodiesel production using rapid mutation of atmospheric and room temperature plasma. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2022; 15:122. [PMID: 36372889 PMCID: PMC9655907 DOI: 10.1186/s13068-022-02220-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Accepted: 10/23/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND Microalgae, with their high adaptability to various stress conditions and rapid growth, are considered excellent biomass resources for lipid production and biodiesel feedstocks. However, lipid yield and productivity of the natural strains are common bottlenecks in their large-scale use for lipid production, which can be overcome by evolving new strains using conventional and advanced mutagenic techniques. It is challenging to generate microalgae strains capable of high lipid synthesis through natural selection. As a result, random mutagenesis is currently considered a viable option in many scenarios. The objective of this study was to explore atmospheric and room temperature plasma (ARTP) as a random mutagenesis technique to obtain high lipid-accumulating mutants of a green microalga for improved biodiesel production. RESULTS A green microalgal species was isolated from the Chinese Yellow Sea and identified as Parachlorella kessleri (OM758328). The isolated microalga was subsequently mutated by ARTP to obtain high lipid-accumulating mutants. Based on the growth rate and lipid content, 5 mutants (named M1, M2, M4, M5, and M8) were selected from 15 pre-selected mutants. These five mutants varied in their growth rate from 0.33 to 0.68 day-1, with the lipid content varying between 0.25 g/L in M2 to 0.30 g/L in M8 at 10th day of cultivation. Among the mutants, M8 showed the maximum biomass productivity (0.046 g/L/day) and lipid productivity (20.19 mg/L/day), which were 75% and 44% higher than the wild strain, respectively. The triglyceride (TAG) content of M8 was found to be 0.56 g/L at 16th day of cultivation, which was 1.77-fold higher than that of the wild strain. Furthermore, M8 had the highest saturated fatty acids (C16-18) with the lowermost polyunsaturated fatty acid content, which are favorable properties of a biodiesel feedstock according to international standards. CONCLUSION The mutant strain of P. kessleri developed by the ARTP technique exhibited significant improvements in biomass productivity, lipid content, and biodiesel quality. Therefore, the biomass of this mutant microalga could be a potential feedstock for biodiesel production.
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Affiliation(s)
- Mostafa E Elshobary
- Department of Botany, Faculty of Science, Tanta University, Tanta, 31527, Egypt.
| | - Hossain M Zabed
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang, 212013, Jiangsu, China
| | - Xianghui Qi
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang, 212013, Jiangsu, China
| | - Rania A El-Shenody
- Department of Botany, Faculty of Science, Tanta University, Tanta, 31527, Egypt
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Shao Y, Fu Y, Chen Y, Abomohra A, He Q, Jin W, Liu J, Tan Z, Li X. Enhancement of black and odorous water treatment coupled with accelerated lipid production by microalgae exposed to 12C 6+ heavy-ion beam irradiation. CHEMOSPHERE 2022; 305:135452. [PMID: 35752308 DOI: 10.1016/j.chemosphere.2022.135452] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Revised: 05/29/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
In this study, Auxenochlorella protothecoides (AP-CK) was selected due to its reported high growth potential in sterilized black and odorous water (SBOW). In order to improve the resource utilization level of microalgae for wastewater treatment, AP-CK was mutated using 12C6+ heavy-ion beam irradiation, and a high lipid-containing mutant (AP-34#) was isolated and further evaluated to treat original black and odorous water (OBOW). Compared with the wild type, the maximum removal rates of COD, NH4+-N and TP of the mutant increased by 8.12 ± 0.33%, 10.43 ± 0.54% and 11.97 ± 0.16%, respectively, while maximum dissolved oxygen content increased from 0 to 4.36 ± 0.25 mg/L. Besides, the mutant lipid yield increased by 115.87 ± 3.22% over the wild type in OBOW. The fatty acid profile of AP-34# grown in SBOW and OBOW showed higher proportion of saturated fatty acids (C16:0 and C18:0) and valuable polyunsaturated fatty acids (mainly C20:5n3 and C22:6n3) which are more suitable for biodiesel production and value-added products, respectively. This work provides a new perspective on improving the characteristics of microalgae and an innovative approach for resource-based microalgae wastewater treatment through bioremediation of black and odorous water.
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Affiliation(s)
- Yitong Shao
- Faculty of Geosciences and Environmental Engineering, Southwest Jiaotong University, Chengdu, 611756, China
| | - Yongsheng Fu
- Faculty of Geosciences and Environmental Engineering, Southwest Jiaotong University, Chengdu, 611756, China
| | - Yangwu Chen
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Abdelfatah Abomohra
- Department of Environmental Engineering, School of Architecture and Civil Engineering, Chengdu University, Chengdu, 610106, China
| | - Qi He
- Faculty of Geosciences and Environmental Engineering, Southwest Jiaotong University, Chengdu, 611756, China
| | - Wenjie Jin
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Jian Liu
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Zhouliang Tan
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China.
| | - Xin Li
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China.
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Hirano T, Kazama Y, Kunitake H, Abe T. Mutagenic Effects of Heavy-Ion Beam Irradiation to Plant Genome. CYTOLOGIA 2022. [DOI: 10.1508/cytologia.87.3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
| | | | | | - Tomoko Abe
- Nishina Center for Accelerator-Based Science, RIKEN
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Takeshita T, Takita K, Ishii K, Kazama Y, Abe T, Kawano S. Robust Mutants Isolated through Heavy-Ion Beam Irradiation and Endurance Screening in the Green Alga Haematococcus pluvialis. CYTOLOGIA 2021. [DOI: 10.1508/cytologia.86.283] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Tsuyoshi Takeshita
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo
| | - Kaori Takita
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo
| | - Kotaro Ishii
- Department of Radiation Measurement and Dose Assessment, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology
| | - Yusuke Kazama
- Faculty of Bioscience and Biotechnology, Fukui Prefectural University
| | - Tomoko Abe
- RIKEN Nishina Center for Accelerator-Based Science
| | - Shigeyuki Kawano
- Functional Biotechnology PJ, Future Center Initiative, The University of Tokyo
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Kselíková V, Singh A, Bialevich V, Čížková M, Bišová K. Improving microalgae for biotechnology - From genetics to synthetic biology - Moving forward but not there yet. Biotechnol Adv 2021; 58:107885. [PMID: 34906670 DOI: 10.1016/j.biotechadv.2021.107885] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 11/28/2021] [Accepted: 12/07/2021] [Indexed: 12/28/2022]
Abstract
Microalgae are a diverse group of photosynthetic organisms that can be exploited for the production of different compounds, ranging from crude biomass and biofuels to high value-added biochemicals and synthetic proteins. Traditionally, algal biotechnology relies on bioprospecting to identify new highly productive strains and more recently, on forward genetics to further enhance productivity. However, it has become clear that further improvements in algal productivity for biotechnology is impossible without combining traditional tools with the arising molecular genetics toolkit. We review recent advantages in developing high throughput screening methods, preparing genome-wide mutant libraries, and establishing genome editing techniques. We discuss how algae can be improved in terms of photosynthetic efficiency, biofuel and high value-added compound production. Finally, we critically evaluate developments over recent years and explore future potential in the field.
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Affiliation(s)
- Veronika Kselíková
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, 379 81 Třeboň, Czech Republic; Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Anjali Singh
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, 379 81 Třeboň, Czech Republic
| | - Vitali Bialevich
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, 379 81 Třeboň, Czech Republic
| | - Mária Čížková
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, 379 81 Třeboň, Czech Republic
| | - Kateřina Bišová
- Institute of Microbiology of the Czech Academy of Sciences, Centre Algatech, Laboratory of Cell Cycles of Algae, 379 81 Třeboň, Czech Republic.
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Supra-Optimal Temperature: An Efficient Approach for Overaccumulation of Starch in the Green Alga Parachlorella kessleri. Cells 2021; 10:cells10071806. [PMID: 34359975 PMCID: PMC8306380 DOI: 10.3390/cells10071806] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 07/11/2021] [Accepted: 07/12/2021] [Indexed: 11/25/2022] Open
Abstract
Green algae are fast-growing microorganisms that are considered promising for the production of starch and neutral lipids, and the chlorococcal green alga Parachlorella kessleri is a favorable model, as it can produce both starch and neutral lipids. P. kessleri commonly divides into more than two daughter cells by a specific mechanism—multiple fission. Here, we used synchronized cultures of the alga to study the effects of supra-optimal temperature. Synchronized cultures were grown at optimal (30 °C) and supra-optimal (40 °C) temperatures and incident light intensities of 110 and 500 μmol photons m−2 s−1. The time course of cell reproduction (DNA replication, cellular division), growth (total RNA, protein, cell dry matter, cell size), and synthesis of energy reserves (net starch, neutral lipid) was studied. At 40 °C, cell reproduction was arrested, but growth and accumulation of energy reserves continued; this led to the production of giant cells enriched in protein, starch, and neutral lipids. Furthermore, we examined whether the increased temperature could alleviate the effects of deuterated water on Parachlorella kessleri growth and division; results show that supra-optimal temperature can be used in algal biotechnology for the production of protein, (deuterated) starch, and neutral lipids.
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Zachleder V, Ivanov IN, Kselíková V, Bialevich V, Vítová M, Ota S, Takeshita T, Kawano S, Bišová K. Characterization of Growth and Cell Cycle Events Affected by Light Intensity in the Green Alga Parachlorella kessleri: A New Model for Cell Cycle Research. Biomolecules 2021; 11:biom11060891. [PMID: 34203860 PMCID: PMC8232753 DOI: 10.3390/biom11060891] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 06/03/2021] [Accepted: 06/05/2021] [Indexed: 11/16/2022] Open
Abstract
Multiple fission is a cell cycle variation leading to the production of more than two daughter cells. Here, we used synchronized cultures of the chlorococcal green alga Parachlorella kessleri to study its growth and pattern of cell division under varying light intensities. The time courses of DNA replication, nuclear and cellular division, cell size, total RNA, protein content, dry matter and accumulation of starch were observed at incident light intensities of 110, 250 and 500 µmol photons m−2s−1. Furthermore, we studied the effect of deuterated water on Parachlorella kessleri growth and division, to mimic the effect of stress. We describe a novel multiple fission cell cycle pattern characterized by multiple rounds of DNA replication leading to cell polyploidization. Once completed, multiple nuclear divisions were performed with each of them, immediately followed by protoplast fission, terminated by the formation of daughter cells. The multiple fission cell cycle was represented by several consecutive doublings of growth parameters, each leading to the start of a reproductive sequence. The number of growth doublings increased with increasing light intensity and led to division into more daughter cells. This study establishes the baseline for cell cycle research at the molecular level as well as for potential biotechnological applications, particularly directed synthesis of (deuterated) starch and/or neutral lipids as carbon and energy reserves.
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Affiliation(s)
- Vilém Zachleder
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
| | - Ivan N. Ivanov
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
- Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Veronika Kselíková
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
- Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic
| | - Vitali Bialevich
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
| | - Milada Vítová
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
| | - Shuhei Ota
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Tsukuba, Ibaraki 305-8506, Japan;
| | - Tsuyoshi Takeshita
- The University of Tokyo Future Center Initiative, Wakashiba 178 4 4, Kashiwa, Chiba 277-0871, Japan; (T.T.); (S.K.)
| | - Shigeyuki Kawano
- The University of Tokyo Future Center Initiative, Wakashiba 178 4 4, Kashiwa, Chiba 277-0871, Japan; (T.T.); (S.K.)
| | - Kateřina Bišová
- Laboratory of Cell Cycles of Algae, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, 37981 Třeboň, Czech Republic; (V.Z.); (I.N.I.); (V.K.); (V.B.); (M.V.)
- Correspondence: ; Tel.: +420-384-340-480
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Enhancing carbohydrate repartitioning into lipid and carotenoid by disruption of microalgae starch debranching enzyme. Commun Biol 2021; 4:450. [PMID: 33837247 PMCID: PMC8035404 DOI: 10.1038/s42003-021-01976-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 03/11/2021] [Indexed: 02/01/2023] Open
Abstract
Light/dark cycling is an inherent condition of outdoor microalgae cultivation, but is often unfavorable for lipid accumulation. This study aims to identify promising targets for metabolic engineering of improved lipid accumulation under outdoor conditions. Consequently, the lipid-rich mutant Chlamydomonas sp. KOR1 was developed through light/dark-conditioned screening. During dark periods with depressed CO2 fixation, KOR1 shows rapid carbohydrate degradation together with increased lipid and carotenoid contents. KOR1 was subsequently characterized with extensive mutation of the ISA1 gene encoding a starch debranching enzyme (DBE). Dynamic time-course profiling and metabolomics reveal dramatic changes in KOR1 metabolism throughout light/dark cycles. During light periods, increased flux from CO2 through glycolytic intermediates is directly observed to accompany enhanced formation of small starch-like particles, which are then efficiently repartitioned in the next dark cycle. This study demonstrates that disruption of DBE can improve biofuel production under light/dark conditions, through accelerated carbohydrate repartitioning into lipid and carotenoid.
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LaPanse AJ, Krishnan A, Posewitz MC. Adaptive Laboratory Evolution for algal strain improvement: methodologies and applications. ALGAL RES 2021. [DOI: 10.1016/j.algal.2020.102122] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Kato Y, Hasunuma T. Metabolic Engineering for Carotenoid Production Using Eukaryotic Microalgae and Prokaryotic Cyanobacteria. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021; 1261:121-135. [PMID: 33783735 DOI: 10.1007/978-981-15-7360-6_10] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Eukaryotic microalgae and prokaryotic cyanobacteria are diverse photosynthetic organisms that produce various useful compounds. Due to their rapid growth and efficient biomass production from carbon dioxide and solar energy, microalgae and cyanobacteria are expected to become cost-effective, sustainable bioresources in the future. These organisms also abundantly produce various carotenoids, but further improvement in carotenoid productivity is needed for a successful commercialization. Metabolic engineering via genetic manipulation and mutational breeding is a powerful tool for generating carotenoid-rich strains. This chapter focuses on carotenoid production in microalgae and cyanobacteria, as well as strategies and potential target genes for metabolic engineering. Recent achievements in metabolic engineering that improved carotenoid production in microalgae and cyanobacteria are also reviewed.
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Affiliation(s)
- Yuichi Kato
- Graduate School of Science, Technology and Innovation, Kobe University, Kobe-city, Hyogo, Japan
| | - Tomohisa Hasunuma
- Graduate School of Science, Technology and Innovation, Kobe University, Kobe-city, Hyogo, Japan.
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Studies on Application of Ion Beam Breeding to Industrial Microorganisms at TIARA. QUANTUM BEAM SCIENCE 2019. [DOI: 10.3390/qubs3020011] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Mutation-breeding technologies are useful tools for the development of new biological resources in plants and microorganisms. In Takasaki Ion Accelerators for Advanced Radiation Application (TIARA) at the National Institutes for Quantum and Radiological Science and Technology, Japan, ion beams were explored as novel mutagens. The mutagenic effects of various ion beams on eukaryotic and prokaryotic microorganisms were described and their application in breeding technology for industrial microorganisms were discussed. Generally, the relative biological effectiveness (RBE) depended on the liner energy transfer (LET) and the highest RBE values were obtained with 12C5+ ion beams. The highest mutation frequencies were obtained at radiation doses that gave 1%–10% of surviving fraction. By using 12C5+ ion beams in this dose range, many microorganisms have been improved successfully at TIARA. Therefore, ion-beam breeding technology for microorganisms will have applications in many industries, including stable food production, sustainable agriculture, environmental conservation, and development of energy resources in the near future. Moreover, genome analyses of the ion-beam-induced mutants are in progress to clear the differences of mutational functions induced by different LET radiations in microorganisms. Further characterizations of mutations induced by different LET radiations will facilitate more effective use of ion beams in microorganisms breeding.
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Yamazaki T, Konosu E, Takeshita T, Hirata A, Ota S, Kazama Y, Abe T, Kawano S. Independent regulation of the lipid and starch synthesis pathways by sulfate metabolites in the green microalga Parachlorella kessleri under sulfur starvation conditions. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.09.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Spontaneous mutation rate as a source of diversity for improving desirable traits in cultured microalgae. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.08.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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15
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Comparison of lipid productivity of Parachlorella kessleri heavy-ion beam irradiation mutant PK4 in laboratory and 150-L mass bioreactor, identification and characterization of its genetic variation. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.09.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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16
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Htet AN, Noguchi M, Ninomiya K, Tsuge Y, Kuroda K, Kajita S, Masai E, Katayama Y, Shikinaka K, Otsuka Y, Nakamura M, Honda R, Takahashi K. Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid. J Biosci Bioeng 2018; 125:717-722. [DOI: 10.1016/j.jbiosc.2017.12.026] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2017] [Revised: 12/27/2017] [Accepted: 12/28/2017] [Indexed: 12/20/2022]
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Murata H, Abe T, Ichida H, Hayashi Y, Yamanaka T, Shimokawa T, Tahara K. Heavy-ion beam mutagenesis of the ectomycorrhizal agaricomycete Tricholoma matsutake that produces the prized mushroom "matsutake" in conifer forests. MYCORRHIZA 2018; 28:171-177. [PMID: 29164316 DOI: 10.1007/s00572-017-0810-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 11/09/2017] [Indexed: 06/07/2023]
Abstract
Tricholoma matsutake is an ectomycorrhizal agaricomycete that produces the prized mushroom "matsutake" in Pinaceae forests. Currently, there are no available cultivars or cultivation methods that produce fruiting bodies. Heavy-ion beams, which induce mutations through double-stranded DNA breaks, have been used widely for plant breeding. In the present study, we examined whether heavy-ion beams could be useful in isolating T. matsutake mutants. An argon-ion beam gave a suitable lethality curve in relation to irradiation doses, accelerating killing at 100-150 Gy. Argon-ion beam irradiation of the agar plate cultures yielded several transient mutants whose colony morphologies differed from that of the wild-type strain at the first screening, but which did not persist following culture transfer. It also generated a mutant whose phenotype remained stable after repeated culture transfers. The stable pleiotropic mutant not only exhibited a different colony morphology to the wild type, but also showed increased degradation of dye-linked water-insoluble amylose and cellulose substrates. Thus, heavy-ion beams may be useful for isolating mutants of T. matsutake, although precautions may be required to maintain the mutants, without phenotypic reversion, during repetitive culture of their mycelia.
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Affiliation(s)
- Hitoshi Murata
- Department of Mushroom Science and Forest Microbiology, Forestry and Forest Products Research Institute, Matsunosato 1, Tsukuba, 305-8687, Japan.
| | - Tomoko Abe
- Ion Beam Breeding Team, RIKEN Nishina Center, Wako, Saitama, 351-0198, Japan
| | - Hiroyuki Ichida
- Ion Beam Breeding Team, RIKEN Nishina Center, Wako, Saitama, 351-0198, Japan
| | - Yoriko Hayashi
- Ion Beam Breeding Team, RIKEN Nishina Center, Wako, Saitama, 351-0198, Japan
| | - Takashi Yamanaka
- Department of Mushroom Science and Forest Microbiology, Forestry and Forest Products Research Institute, Matsunosato 1, Tsukuba, 305-8687, Japan
| | - Tomoko Shimokawa
- Department of Forest Resource Chemistry, Forestry and Forest Products Research Institute, Matsunosato 1, Tsukuba, 305-8687, Japan
| | - Ko Tahara
- Department of Forest Molecular Genetics and Biotechnology, Forestry and Forest Products Research Institute, Matsunosato 1, Tsukuba, 305-8687, Japan
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Kato Y, Ho SH, Vavricka CJ, Chang JS, Hasunuma T, Kondo A. Evolutionary engineering of salt-resistant Chlamydomonas sp. strains reveals salinity stress-activated starch-to-lipid biosynthesis switching. BIORESOURCE TECHNOLOGY 2017. [PMID: 28624244 DOI: 10.1016/j.biortech.2017.06.035] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The aim of this study was to improve biomass production of the green microalga Chlamydomonas sp. JSC4 under high salinity conditions. For this purpose, heavy ion beam-coupled mutagenesis and evolutionary engineering were performed using JSC4 as the parent strain. After long-term and continuous cultivation with high salinity, salt-resistant strains that grow well even in the presence of 7% sea salt were successfully obtained. Transcriptional analysis revealed inactivation of starch-to-lipid biosynthesis switching, which resulted in delayed starch degradation and decreased lipid content in the salt-resistant strains. Cellular aggregation and hypertrophy during high salinity were relieved in these strains, indicating strong resistance to salt stress. These results suggest that high salinity stress, not the salinity condition itself, is important for activating lipid accumulation mechanisms in microalgae.
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Affiliation(s)
- Yuichi Kato
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe 657-8501, Japan
| | - Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Municipal and Environmental Engineering, Harbin Institute of Technology, Harbin 150090, PR China
| | - Christopher J Vavricka
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe 657-8501, Japan
| | - Jo-Shu Chang
- Department of Chemical Engineering, National Cheng Kung University, Tainan 701, Taiwan; Research Center for Energy Technology and Strategy, National Cheng Kung University, Tainan 701, Taiwan
| | - Tomohisa Hasunuma
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe 657-8501, Japan.
| | - Akihiko Kondo
- Graduate School of Science, Technology and Innovation, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe 657-8501, Japan; Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe 657-8501, Japan
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19
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Yamada K, Kazama Y, Mitra S, Marukawa Y, Arashida R, Abe T, Ishikawa T, Suzuki K. Production of a thermal stress resistant mutant Euglena gracilis strain using Fe-ion beam irradiation. Biosci Biotechnol Biochem 2016; 80:1650-6. [DOI: 10.1080/09168451.2016.1171702] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Euglena gracilis is a common phytoplankton species, which also has motile flagellate characteristics. Recent research and development has enabled the industrial use of E. gracilis and selective breeding of this species is expected to further expand its application. However, the production of E. gracilis nuclear mutants is difficult because of the robustness of its genome. To establish an efficient mutation induction procedure for E. gracilis, we employed Fe-ion beam irradiation in the RIKEN RI beam factory. A decrease in the survival rate was observed with the increase in irradiation dose, and the upper limit used for E. gracilis selective breeding was around 50 Gy. For a practical trial of Fe-ion irradiation, we conducted a screening to isolate high-temperature-tolerant mutants. The screening yielded mutants that proliferated faster than the wild-type strain at 32 °C. Our results demonstrate the effectiveness of heavy-ion irradiation on E. gracilis selective breeding.
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Affiliation(s)
- Koji Yamada
- Euglena Co., Ltd., Tokyo, Japan
- JST, CREST, Tokyo, Japan
| | - Yusuke Kazama
- RIKEN Nishina Center for Accelerator-based Science, Saitama, Japan
| | | | | | | | - Tomoko Abe
- RIKEN Nishina Center for Accelerator-based Science, Saitama, Japan
| | | | - Kengo Suzuki
- Euglena Co., Ltd., Tokyo, Japan
- JST, CREST, Tokyo, Japan
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20
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Yamada K, Suzuki H, Takeuchi T, Kazama Y, Mitra S, Abe T, Goda K, Suzuki K, Iwata O. Efficient selective breeding of live oil-rich Euglena gracilis with fluorescence-activated cell sorting. Sci Rep 2016; 6:26327. [PMID: 27212384 PMCID: PMC4876468 DOI: 10.1038/srep26327] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Accepted: 05/03/2016] [Indexed: 11/08/2022] Open
Abstract
Euglena gracilis, a microalgal species of unicellular flagellate protists, has attracted much attention in both the industrial and academic sectors due to recent advances in the mass cultivation of E. gracilis that have enabled the cost-effective production of nutritional food and cosmetic commodities. In addition, it is known to produce paramylon (β-1,3-glucan in a crystalline form) as reserve polysaccharide and convert it to wax ester in hypoxic and anaerobic conditions-a promising feedstock for biodiesel and aviation biofuel. However, there remain a number of technical challenges to be solved before it can be deployed in the competitive fuel market. Here we present a method for efficient selective breeding of live oil-rich E. gracilis with fluorescence-activated cell sorting (FACS). Specifically, the selective breeding method is a repetitive procedure for one-week heterotrophic cultivation, staining intracellular lipids with BODIPY(505/515), and FACS-based isolation of top 0.5% lipid-rich E. gracilis cells with high viability, after inducing mutation with Fe-ion irradiation to the wild type (WT). Consequently, we acquire a live, stable, lipid-rich E. gracilis mutant strain, named B1ZFeL, with 40% more lipid content on average than the WT. Our method paves the way for rapid, cost-effective, energy-efficient production of biofuel.
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Affiliation(s)
| | | | | | - Yusuke Kazama
- Nishina Center for Accelerator-Based Science, RIKEN, Saitama 351-0198, Japan
| | | | - Tomoko Abe
- Nishina Center for Accelerator-Based Science, RIKEN, Saitama 351-0198, Japan
| | - Keisuke Goda
- Department of Chemistry, University of Tokyo, Tokyo 113-0033, Japan
- Department of Electrical Engineering, University of California, Los Angeles, California 90095, USA
- Japan Science and Technology Agency, Tokyo 102-0075, Japan
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Hu W, Chen JH, Wang SY, Liu J, Song Y, Wu QF, Li WJ. Changes in the physiological properties and kinetics of citric acid accumulation via carbon ion irradiation mutagenesis of Aspergillus niger. J Zhejiang Univ Sci B 2016. [DOI: 10.1631/jzus.b1500120] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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22
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Wang J, Li X, Lu D, Du Y, Ma L, Li W, Chen J, Li F, Fan Y, Hu G, Wang J. Photosynthetic Effect in Selenastrum capricornutum Progeny after Carbon-Ion Irradiation. PLoS One 2016; 11:e0149381. [PMID: 26919351 PMCID: PMC4769097 DOI: 10.1371/journal.pone.0149381] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 02/01/2016] [Indexed: 11/30/2022] Open
Abstract
A large proportion of mutants with altered pigment features have been obtained via exposure to heavy-ion beams, a technique that is efficient for trait improvement in the breeding of plants and algae. However, little is known about the underlying mechanisms by which the photosynthetic pigments are altered by heavy-ion irradiation. In our study, the photosynthetic characteristics of progenies from carbon-ion irradiated Selenastrum capricornutum were investigated. Five progenies deficient in chlorophyll a were isolated after carbon-ion exposure. Photosynthetic characteristics, photoprotection capacity and gene expression of the light-harvesting complex in these progenies were further characterized by the measurement of chlorophyll fluorescence parameters (Fv/Fm, ФPSII, NPQ, ETR), the de-epoxidation state of the xanthophyll cycle, the amount of lutein and quantitative real-time PCR. High maximum quantum yield of photosystem II at day 10 and high thermal dissipation ability were observed in progenies #23 and #37 under normal culture condition. Progenies #18, #19 and #20 showed stronger resistance against high levels of light steps than the control group (612–1077 μmol photons m -2 s -1, p< 0.05). The progenies #20 and #23 exhibited strong photoprotection by thermal dissipation and quenching of 3Chl* after 24 h of high light treatment. The mRNA levels of Lhcb5, Lhcbm5 and Lhcbm1 of the light-harvesting complex revealed markedly differential expression in the five progenies irradiated by carbon-ion beams. This work indicates that photosynthetic efficiency, photoprotection ability and the expression of light-harvesting antennae in unicellular green algae can be markedly influenced by irradiation. To our knowledge, this is the first report on changes in the photosynthetic pigments of green algae after treatment with carbon-ion beams.
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Affiliation(s)
- Jie Wang
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
- University of Chinese Academy of Sciences, Beijing, PR China
| | - Xin Li
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Dong Lu
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Yan Du
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Liang Ma
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Wenjian Li
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Jihong Chen
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
| | - Fuli Li
- Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, PR China
| | - Yong Fan
- Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, PR China
| | - Guangrong Hu
- Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, PR China
| | - Jufang Wang
- Gansu Key Laboratory of Space Radiobiology & Microbial Resources and Application, Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou, PR China
- * E-mail:
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23
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Vitova M, Bisova K, Kawano S, Zachleder V. Accumulation of energy reserves in algae: From cell cycles to biotechnological applications. Biotechnol Adv 2015; 33:1204-18. [DOI: 10.1016/j.biotechadv.2015.04.012] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 04/27/2015] [Accepted: 04/28/2015] [Indexed: 01/28/2023]
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24
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Takeshita T, Takeda K, Ota S, Yamazaki T, Kawano S. A Simple Method for Measuring the Starch and Lipid Contents in the Cell of Microalgae. CYTOLOGIA 2015. [DOI: 10.1508/cytologia.80.475] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Tsuyoshi Takeshita
- Department of Integrated Biosciences, Graduate school of Frontier Sciences, University of Tokyo
| | - Kohei Takeda
- Department of Integrated Biosciences, Graduate school of Frontier Sciences, University of Tokyo
| | - Shuhei Ota
- Department of Integrated Biosciences, Graduate school of Frontier Sciences, University of Tokyo
- Japan Science and Technology Agency, CREST
| | - Tomokazu Yamazaki
- Department of Integrated Biosciences, Graduate school of Frontier Sciences, University of Tokyo
- Japan Science and Technology Agency, CREST
| | - Shigeyuki Kawano
- Department of Integrated Biosciences, Graduate school of Frontier Sciences, University of Tokyo
- Japan Science and Technology Agency, CREST
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