1
|
Di Caprio F. Cultivation processes to select microorganisms with high accumulation ability. Biotechnol Adv 2021; 49:107740. [PMID: 33838283 DOI: 10.1016/j.biotechadv.2021.107740] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2020] [Revised: 02/26/2021] [Accepted: 03/26/2021] [Indexed: 10/21/2022]
Abstract
The microbial ability to accumulate biomolecules is fundamental for different biotechnological applications aiming at the production of biofuels, food and bioplastics. However, high accumulation is a selective advantage only under certain stressful conditions, such as nutrient depletion, characterized by lower growth rate. Conventional bioprocesses maintain an optimal and stable environment for large part of the cultivation, that doesn't reward cells for their accumulation ability, raising the risk of selection of contaminant strains with higher growth rate, but lower accumulation of products. Here in this work the physiological responses of different microorganisms (microalgae, bacteria, yeasts) under N-starvation and energy starvation are reviewed, with the aim to furnish relevant insights exploitable to develop tailored bioprocesses to select specific strains for their higher accumulation ability. Microorganism responses to starvation are reviewed focusing on cell cycle, biomass production and variations in biochemical composition. Then, the work describes different innovative bioprocess configurations exploiting uncoupled nutrient feeding strategies (feast-famine), tailored to maintain a selective pressure to reward the strains with higher accumulation ability in mixed microbial populations. Finally, the main models developed in recent studies to describe and predict microbial growth and intracellular accumulation upon N-starvation and feast-famine conditions have been reviewed.
Collapse
Affiliation(s)
- Fabrizio Di Caprio
- Department of Chemistry, University Sapienza of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy.
| |
Collapse
|
2
|
León-Saiki GM, Carreres BM, Remmers IM, Wijffels RH, Martins dos Santos VA, van der Veen D, Schaap PJ, Suarez-Diez M, Martens DE. Evaluation of diurnal responses of Tetradesmus obliquus under nitrogen limitation. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
3
|
Shoener BD, Schramm SM, Béline F, Bernard O, Martínez C, Plósz BG, Snowling S, Steyer JP, Valverde-Pérez B, Wágner D, Guest JS. Microalgae and cyanobacteria modeling in water resource recovery facilities: A critical review. WATER RESEARCH X 2019; 2:100024. [PMID: 31194023 PMCID: PMC6549905 DOI: 10.1016/j.wroa.2018.100024] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Revised: 12/19/2018] [Accepted: 12/20/2018] [Indexed: 05/31/2023]
Abstract
Microalgal and cyanobacterial resource recovery systems could significantly advance nutrient recovery from wastewater by achieving effluent nitrogen (N) and phosphorus (P) levels below the current limit of technology. The successful implementation of phytoplankton, however, requires the formulation of process models that balance fidelity and simplicity to accurately simulate dynamic performance in response to environmental conditions. This work synthesizes the range of model structures that have been leveraged for algae and cyanobacteria modeling and core model features that are required to enable reliable process modeling in the context of water resource recovery facilities. Results from an extensive literature review of over 300 published phytoplankton models are presented, with particular attention to similarities with and differences from existing strategies to model chemotrophic wastewater treatment processes (e.g., via the Activated Sludge Models, ASMs). Building on published process models, the core requirements of a model structure for algal and cyanobacterial processes are presented, including detailed recommendations for the prediction of growth (under phototrophic, heterotrophic, and mixotrophic conditions), nutrient uptake, carbon uptake and storage, and respiration.
Collapse
Affiliation(s)
- Brian D. Shoener
- Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, 205 N. Mathews Avenue, Urbana, IL, 61801, USA
| | - Stephanie M. Schramm
- Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, 205 N. Mathews Avenue, Urbana, IL, 61801, USA
| | | | - Olivier Bernard
- Université Côte d’Azur, INRIA, Biocore, 2004, Route des Lucioles – BP 93, 06 902, Sophia Antipolis Cedex, France
| | - Carlos Martínez
- Université Côte d’Azur, INRIA, Biocore, 2004, Route des Lucioles – BP 93, 06 902, Sophia Antipolis Cedex, France
| | - Benedek G. Plósz
- Department of Chemical Engineering, University of Bath, Claverton Down, Bath, BA2 7AY, UK
| | - Spencer Snowling
- Hydromantis Environmental Software Solutions, Inc., 407 King Street West, Hamilton, Ontario, L8P 1B5, Canada
| | | | - Borja Valverde-Pérez
- Department of Environmental Engineering, Technical Univ. of Denmark, Bygningstorvet, Building 115, 2800, Kgs. Lyngby, Denmark
| | - Dorottya Wágner
- Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220, Aalborg East, Denmark
| | - Jeremy S. Guest
- Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, 205 N. Mathews Avenue, Urbana, IL, 61801, USA
| |
Collapse
|
4
|
Remmers IM, D'Adamo S, Martens DE, de Vos RC, Mumm R, America AH, Cordewener JH, Bakker LV, Peters SA, Wijffels RH, Lamers PP. Orchestration of transcriptome, proteome and metabolome in the diatom Phaeodactylum tricornutum during nitrogen limitation. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.08.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
5
|
León-Saiki GM, Ferrer Ledo N, Lao-Martil D, van der Veen D, Wijffels RH, Martens DE. Metabolic modelling and energy parameter estimation of Tetradesmus obliquus. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.09.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
|
6
|
The impact of day length on cell division and efficiency of light use in a starchless mutant of Tetradesmus obliquus. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.02.027] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
|
7
|
Can We Approach Theoretical Lipid Yields in Microalgae? Trends Biotechnol 2018; 36:265-276. [DOI: 10.1016/j.tibtech.2017.10.020] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Revised: 10/29/2017] [Accepted: 10/30/2017] [Indexed: 11/17/2022]
|
8
|
|
9
|
Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z. GENOME ANNOUNCEMENTS 2017; 5:5/32/e00617-17. [PMID: 28798164 PMCID: PMC5552973 DOI: 10.1128/genomea.00617-17] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The green alga Scenedesmus obliquus is an emerging platform species for the industrial production of biofuels. Here, we report the draft assembly and annotation for the nuclear, plastid, and mitochondrial genomes of S. obliquus strain DOE0152z.
Collapse
|
10
|
Remmers IM, Martens DE, Wijffels RH, Lamers PP. Dynamics of triacylglycerol and EPA production in Phaeodactylum tricornutum under nitrogen starvation at different light intensities. PLoS One 2017; 12:e0175630. [PMID: 28403203 PMCID: PMC5389818 DOI: 10.1371/journal.pone.0175630] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Accepted: 03/29/2017] [Indexed: 01/02/2023] Open
Abstract
Lipid production in microalgae is highly dependent on the applied light intensity. However, for the EPA producing model-diatom Phaeodactylum tricornutum, clear consensus on the impact of incident light intensity on lipid productivity is still lacking. This study quantifies the impact of different incident light intensities on the biomass, TAG and EPA yield on light in nitrogen starved batch cultures of P. tricornutum. The maximum biomass concentration and maximum TAG and EPA contents were found to be independent of the applied light intensity. The lipid yield on light was reduced at elevated light intensities (>100 μmol m-2 s-1). The highest TAG yield on light (112 mg TAG molph-1) was found at the lowest light intensity tested (60 μmol m-2 s-1), which is still relatively low to values reported in literature for other algae. Furthermore, mass balance analysis showed that the EPA fraction in TAG may originate from photosynthetic membrane lipids.
Collapse
Affiliation(s)
- Ilse M. Remmers
- Bioprocess Engineering & AlgaePARC, Wageningen University and Research, Wageningen, The Netherlands
- * E-mail:
| | - Dirk E. Martens
- Bioprocess Engineering & AlgaePARC, Wageningen University and Research, Wageningen, The Netherlands
| | - René H. Wijffels
- Bioprocess Engineering & AlgaePARC, Wageningen University and Research, Wageningen, The Netherlands
- Biosciences and Aquaculture, Nord University, Bodø, Norway
| | - Packo P. Lamers
- Bioprocess Engineering & AlgaePARC, Wageningen University and Research, Wageningen, The Netherlands
| |
Collapse
|
11
|
Bekirogullari M, Fragkopoulos I, Pittman J, Theodoropoulos C. Production of lipid-based fuels and chemicals from microalgae: An integrated experimental and model-based optimization study. ALGAL RES 2017. [DOI: 10.1016/j.algal.2016.12.015] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
|
12
|
Draft Genome Sequence of the Oleaginous Green Alga Tetradesmus obliquus UTEX 393. GENOME ANNOUNCEMENTS 2017; 5:5/3/e01449-16. [PMID: 28104651 PMCID: PMC5255914 DOI: 10.1128/genomea.01449-16] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The microalgae Tetradesmus obliquus is able to maintain a high photosynthetic efficiency under nitrogen limitation and is considered a promising green microalgae for sustainable production of diverse compounds, including biofuels. Here, we report the first draft whole-genome shotgun sequencing of T. obliquus. The final assembly comprises 108,715,903 bp with over 1,368 scaffolds.
Collapse
|
13
|
de Vree JH, Bosma R, Wieggers R, Gegic S, Janssen M, Barbosa MJ, Wijffels RH. Turbidostat operation of outdoor pilot-scale photobioreactors. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.06.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
14
|
Transcriptome landscape of Synechococcus elongatus PCC 7942 for nitrogen starvation responses using RNA-seq. Sci Rep 2016; 6:30584. [PMID: 27488818 PMCID: PMC4973221 DOI: 10.1038/srep30584] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 07/04/2016] [Indexed: 01/30/2023] Open
Abstract
The development of high-throughput technology using RNA-seq has allowed understanding of cellular mechanisms and regulations of bacterial transcription. In addition, transcriptome analysis with RNA-seq has been used to accelerate strain improvement through systems metabolic engineering. Synechococcus elongatus PCC 7942, a photosynthetic bacterium, has remarkable potential for biochemical and biofuel production due to photoautotrophic cell growth and direct CO2 conversion. Here, we performed a transcriptome analysis of S. elongatus PCC 7942 using RNA-seq to understand the changes of cellular metabolism and regulation for nitrogen starvation responses. As a result, differentially expressed genes (DEGs) were identified and functionally categorized. With mapping onto metabolic pathways, we probed transcriptional perturbation and regulation of carbon and nitrogen metabolisms relating to nitrogen starvation responses. Experimental evidence such as chlorophyll a and phycobilisome content and the measurement of CO2 uptake rate validated the transcriptome analysis. The analysis suggests that S. elongatus PCC 7942 reacts to nitrogen starvation by not only rearranging the cellular transport capacity involved in carbon and nitrogen assimilation pathways but also by reducing protein synthesis and photosynthesis activities.
Collapse
|
15
|
Gerber LN, Tester JW, Beal CM, Huntley ME, Sills DL. Target Cultivation and Financing Parameters for Sustainable Production of Fuel and Feed from Microalgae. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:3333-3341. [PMID: 26942694 DOI: 10.1021/acs.est.5b05381] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Production of economically competitive and environmentally sustainable algal biofuel faces technical challenges that are subject to high uncertainties. Here we identify target values for algal productivity and financing conditions required to achieve a biocrude selling price of $5 per gallon and beneficial environmental impacts. A modeling framework--combining process design, techno-economic analysis, life cycle assessment, and uncertainty analysis--was applied to two conversion pathways: (1) "fuel only (HTL)", using hydrothermal liquefaction to produce biocrude, heat and power, and (2) "fuel and feed", using wet extraction to produce biocrude and lipid-extracted algae, which can substitute components of animal and aqua feeds. Our results suggest that with supporting policy incentives, the "fuel and feed" scenario will likely achieve a biocrude selling price of less than $5 per gallon at a productivity of 39 g/m(2)/day, versus 47 g/m(2)/day for the "fuel only (HTL)" scenario. Furthermore, if lipid-extracted algae are used to substitute fishmeal, the process has a 50% probability of reaching $5 per gallon with a base case productivity of 23 g/m(2)/day. Scenarios with improved economics were associated with beneficial environmental impacts for climate change, ecosystem quality, and resource depletion, but not for human health.
Collapse
Affiliation(s)
- Léda N Gerber
- Department of Chemical and Biomolecular Engineering, Cornell University , Ithaca, New York 14853, United States
- Cornell Energy Institute, Cornell University , Ithaca, New York 14853, United States
| | - Jefferson W Tester
- Department of Chemical and Biomolecular Engineering, Cornell University , Ithaca, New York 14853, United States
- Cornell Energy Institute, Cornell University , Ithaca, New York 14853, United States
| | - Colin M Beal
- B&D Engineering and Consulting LLC, Lander Wyoming, United States
| | - Mark E Huntley
- Marine Laboratory, Nicholas School of the Environment, Duke University , Durham, North Carolina 27708, United States
| | - Deborah L Sills
- Department of Chemical and Biomolecular Engineering, Cornell University , Ithaca, New York 14853, United States
- Cornell Energy Institute, Cornell University , Ithaca, New York 14853, United States
- Department of Civil and Environmental Engineering, Bucknell University , Lewisburg, Pennsylvania 17837, United States
| |
Collapse
|
16
|
Janssen M. Microalgal Photosynthesis and Growth in Mass Culture. PHOTOBIOREACTION ENGINEERING 2016. [DOI: 10.1016/bs.ache.2015.11.001] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
17
|
Benvenuti G, Lamers PP, Breuer G, Bosma R, Cerar A, Wijffels RH, Barbosa MJ. Microalgal TAG production strategies: why batch beats repeated-batch. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:64. [PMID: 26985237 PMCID: PMC4793540 DOI: 10.1186/s13068-016-0475-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Accepted: 03/02/2016] [Indexed: 05/09/2023]
Abstract
BACKGROUND For a commercially feasible microalgal triglyceride (TAG) production, high TAG productivities are required. The operational strategy affects TAG productivity but a systematic comparison between different strategies is lacking. For this, physiological responses of Nannochloropsis sp. to nitrogen (N) starvation and N-rich medium replenishment were studied in lab-scale batch and repeated-batch (part of the culture is periodically harvested and N-rich medium is re-supplied) cultivations under continuous light, and condensed into a mechanistic model. RESULTS The model, which successfully described both strategies, was used to identify potential improvements for both batch and repeated-batch and compare the two strategies on optimized TAG yields on light (amount of TAGs produced per mol of supplied PAR photons). TAG yields on light, for batch, from 0.12 (base case at high light) to 0.49 g molph (-1) (at low light and with improved strain) and, for repeated-batch, from 0.07 (base case at high light) to 0.39 g molph (-1) (at low light with improved strain and optimized repeated-batch settings). The base case yields are in line with the yields observed in current state-of-the-art outdoor TAG production. CONCLUSIONS For continuous light, an optimized batch process will always result in higher TAG yield on light compared to an optimized repeated-batch process. This is mainly because repeated-batch cycles start with N-starved cells. Their reduced photosynthetic capacity leads to inefficient light use during the regrowth phase which results in lower overall TAG yields compared to a batch process.
Collapse
Affiliation(s)
- Giulia Benvenuti
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Packo P. Lamers
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Guido Breuer
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Rouke Bosma
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| | - Ana Cerar
- />Microbiology, Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, 1000 Ljubljana, Slovenia
| | - René H. Wijffels
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
- />Biosciences and Aquaculture, Nordland University, 8049 Bodø, Norway
| | - Maria J. Barbosa
- />Bioprocess Engineering, AlgaePARC, Wageningen University, P.O. Box 16, 6700 AA Wageningen, The Netherlands
| |
Collapse
|