Comprehensive analysis of microbial communities in full-scale mesophilic and thermophilic anaerobic digesters treating food waste-recycling wastewater

Occurrence and dissipation mechanisms of organic contaminants during sewage sludge anaerobic digestion: A critical review

Sewage sludge, a complex mixture of contaminants and pathogenic agents, necessitates treatment or stabilization like anaerobic digestion (AD) before safe disposal. AD-derived products (solid digestate and liquid fraction) can be used as fertilizers. During AD, biogas is also produced, and used for energy purposes. All these fractions can be contaminated with various compounds, whose amount depends on the feedstocks used in AD (and their mutual proportions). This paper reviews studies on the distribution of organic contaminants across AD fractions (solid digestate, liquid fraction, and biogas), delving into the mechanisms behind contaminant dissipation and proposing future research directions. AD proves to be a relatively effective method for removing polychlorinated biphenyls, polycyclic aromatic hydrocarbons, pharmaceuticals, antibiotic resistance genes and hydrocarbons. Contaminants are predominantly removed through biodegradation, but many compounds, especially hydrophobic (e.g. per- and polyfluoroalkyl substances), are also sorbed onto digestate particles. The process of sorption is suggested to reduce the bioavailability of contaminants. As a result of sorption, contaminants accumulate in the largest amount in the solid digestate, whereas in smaller amounts in the other AD products. Polar pharmaceuticals (e.g. metformin) are particularly leached, while volatile methylsiloxanes and polycyclic aromatic hydrocarbons, characterized by a high Henry's law constant, are volatilized into the biogas. The removal of compounds can be affected by AD operational parameters, the type of sludge, physicochemical properties of contaminants, and the sludge pretreatment used.

Multivariate comparison of taxonomic, chemical and operational data from 80 different full-scale anaerobic digester-related systems

BACKGROUND

The holistic characterization of different microbiomes in anaerobic digestion (AD) systems can contribute to a better understanding of these systems and provide starting points for bioengineering. The present study investigates the microbiome of 80 European full-scale AD systems. Operational, chemical and taxonomic data were thoroughly collected, analysed and correlated to identify the main drivers of AD processes.

RESULTS

The present study describes chemical and operational parameters for a broad spectrum of different AD systems. With this data, Spearman correlation and differential abundance analyses were applied to narrow down the role of the individual microorganisms detected. The authors succeeded in further limiting the number of microorganisms in the core microbiome for a broad range of AD systems. Based on 16S rRNA gene amplicon sequencing, MBA03, Proteiniphilum, a member of the family Dethiobacteraceae, the genus Caldicoprobacter and the methanogen Methanosarcina were the most prevalent and abundant organisms identified in all digesters analysed. High ratios for Methanoculleus are often described for agricultural co-digesters. Therefore, it is remarkable that Methanosarcina was surprisingly high in several digesters reaching ratios up to 47.2%. The various statistical analyses revealed that the microorganisms grouped according to different patterns. A purely taxonomic correlation enabled a distinction between an acetoclastic cluster and a hydrogenotrophic one. However, in the multivariate analysis with chemical parameters, the main clusters corresponded to hydrolytic and acidogenic microorganisms, with SAOB bacteria being particularly important in the second group. Including operational parameters resulted in digester-type specific grouping of microbes. Those with separate acidification stood out among the many reactor types due to their unexpected behaviour. Despite maximizing the organic loading rate in the hydrolytic pretreatments, these stages turned into extremely robust methane production units.

CONCLUSIONS

From 80 different AD systems, one of the most holistic data sets is provided. A very distinct formation of microbial clusters was discovered, depending on whether taxonomic, chemical or operational parameters were combined. The microorganisms in the individual clusters were strongly dependent on the respective reference parameters.

Material flow analysis of an upgraded anaerobic digestion treatment plant with separated utilization of carbon and nitrogen of food waste

Anaerobic digestion of food waste can recover carbon in the form of biogas, while the high concentration of ammonia nitrogen in the digestion effluent becomes troublesome. Therefore, some new treatment plants use three-phase centrifugation to separate homogenized food waste into nitrogen-rich fine slag for insect cultivation and carbon-rich liquid for anaerobic digestion. To analyze the effects of the carbon-nitrogen separation, an upgraded plant's material and elementary flows were investigated. The three-phase separation process redistributed carbon and nitrogen, and the biogas slurry was the primary output. The principal endpoint for C was the crude oil, capturing 57.1 ± 13.1 % of the total input; the find slag collected 48.3 ± 6.9 % of the total N input, and the biogas slag accepted 52.9 ± 4.4 % of the P input. The carbon-nitrogen separation strategy can improve digestion efficiency and increase treatment benefits significantly, marking a promising direction for future developments in food waste utilization.

Multi-stage aeration regime to regulate organic conversion toward gas alleviation and humification in food waste digestate composting

Aerobic composting has been considered as a pragmatic technique to convert food waste digestate into high-quality biofertiliser. Nevertheless, massive gaseous emission and immature product remain the primary challenges in food waste digestate composting. Thus, the performance of multi-stage aeration regimes to improve gaseous emissions and organic humification during food waste digestate composting was investigated in this study. In addition to continuous aeration with a constant intensity of 0.3 L kg·dry mass (DM)-1·min-1, two multi-stage decreased aeration regimes were designed as "0.3-0.2-0.1" and "0.3-0.1-0.1" L·kg·DM-1·min-1 from the thermophilic to cooling and then mature stages, respectively. Results showed that the decreased aeration regimes could alleviate nitrous oxide (N2O) and ammonia (NH3) emission and slightly enhance humification during composting. The alleviated N2O and NH3 emission were mainly contributed by abiotically reducing gaseous release potential as well as biotically inactivating denitrifers (Pusillimonas and Pseudidiomarina) and proliferating Atopobium to reduce nitrate availability under lower aeration supply. The "0.3-0.2-0.1 L kg·DM-1·min-1" regime exhibited a more excellent performance to alleviate N2O and NH3 emission by 27.5% and 16.3%, respectively. Moreover, the decreased aeration regimes also favored the enrichment of functional bacteria (Caldicoprobacter and Syntrophomonas) to accelerate lignocellulosic biodegradation and thus humic acid synthesis by 6.5%-11.2%. Given its better performance to improve gaseous emissions and humification, the aeration regime of "0.3-0.2-0.1 L kg·DM-1·min-1" are recommended in food waste digestate composting in practice.

Enhancing methane production from food waste with iron-carbon micro-electrolysis in a two-stage process

A two-stage process, consisting of a leach-bed reactor (LBR) and an up-flow anaerobic sludge blanket reactor (UASB), has been commonly adopted to improve food waste anaerobic digestion. However, its application is limited due to low hydrolysis and methanogenesis efficiencies. This study proposed a strategy of incorporating iron-carbon micro-electrolysis (ICME) into the UASB and recirculating its effluent to the LBR to improve the two-stage process efficiency. Results showed that the integration of the ICME with the UASB significantly increased the CH4 yield by 168.29%. The improvement of the food waste hydrolysis in the LBR mainly contributed to the enhanced CH4 yield (approximately 94.5%). The enrichment of hydrolytic-acidogenic bacterial activity, facilitated by the Fe2+ generated through ICME, might be the primary cause of the improved food waste hydrolysis. Moreover, ICME enriched the growth of hydrogenotrophic methanogens and stimulated the hydrogenotrophic methanogenesis pathway in the UASB, contributing partially to the enhanced CH4 yield.

A hyperthermophilic anaerobic fermentation platform for highly efficient short chain fatty acids production from thermal hydrolyzed sludge

In this study, a carboxylate platform of hyperthermophilic (70 ℃) anaerobic fermentation (HAF) for short chain fatty acids (SCFAs) production from thermal hydrolyzed sludge (THS) was established. The long-term performance for SCFAs production and the microbial communities of this HAF under different SRTs were systematically investigated. Under the optimum SRT of 3 d, the HAF had the highest acetate production rate of 1.12 g COD/L/d which accounted for 60% in SCFAs. It also rendered a good performance in SCFAs production, with concentration, production rate and yield of 6.61 g COD/L, 1.86 g COD/L/d and 324 g COD/kg VSSin, respectively. Nearly no biogas produced from this system, which reduced the loss of carbon sources from the system. This was due to the inhibition of methanogenesis by the hyperthermophilic condition and the high content of total ammonia nitrogen (TAN) and free ammonia nitrogen (FAN). Tepidimicrobium, Bhargavaea and XBB1006 were the dominant genus-level biomarkers under the optimum SRT, which facilitated the decomposition of monosaccharides, amino acids, terpenoids and polyketides into SCFAs. This work provides an applicable anaerobic carboxylate platform for highly efficient SCFAs production from excess sludge.

Acclimatizing waste activated sludge in a thermophilic anaerobic fixed-bed biofilm reactor to maximize biogas production for food waste treatment at high organic loading rates

Thermophilic anaerobic digestion (TAD) provides a promising solution for sustainable high-strength waste treatment due to its enhanced methane-rich biogas recovery. However, high organic loading rates (OLR) exceeding 3.0 kgCOD/m3/day and short hydraulic retention times (HRT) below 10 days pose challenges in waste-to-energy conversion during TAD, stemming from volatile fatty acids (VFAs) accumulation and methanogenesis failure. In this study, we implemented a stepwise strategy for acclimatizing waste activated sludge (WAS) in a thermophilic anaerobic fixed-bed biofilm reactor (TA-FBBR) to optimize methanogen populations, thereby enhancing waste-to-energy efficiencies under elevated OLRs in food waste treatment. Results showed that following stepwise acclimatization, the TA-FBBR achieved stable methane production of approximately 5.8 L/L-reactor/day at an ultrahigh OLR of ∼20 kgCOD/m3/day and ∼15 kgVS/m3/day at 6-day HRT in food waste treatment. The average methane yield reached 0.45 m3/kgCODremoval, attaining the theoretical production in TAD. Moreover, VFA concentrations were stabilized below 1000 mg/L at the ultrahigh OLR under 6-day HRT, while maintaining an acetate/propionate ratio of > 1.8 and a VFA/TAK ratio of < 0.3 serving as effective indicators of system stability and methane yield potential. The microbial community analysis revealed that the WAS acclimatization strategy fostered the microbial diversity and abundance of Methanothermobacter and Methanosarcina. Methanosarcina in the biofilm were observed to be twice as abundant as Methanothermobacter, indicating a potential preference for biofilm existence among methanogens. The findings demonstrated an effective strategy, specifically the stepwise acclimatization of WAS in a thermophilic fixed-bed biofilm reactor, to enhance the food waste treatment performance at high OLRs, contributing valuable mechanistic and technical insights for future sustainable high-strength waste management.

A comprehensive review on food waste anaerobic co-digestion: Research progress and tendencies

Food waste (FW) anaerobic digestion systems are prone to imbalance during long-term operation, and the imbalance mechanism is complex. Anaerobic co-digestion (AcoD) of FW and other substrates can overcome the performance limitations of single digestion, allowing for the mutual use of multiple wastes and resource recovery. Research on the AcoD of FW has been widely conducted and successfully applied to a practical engineering scale. Therefore, this review describes the research progress of AcoD of FW with other substrates. By analyzing the problems and challenges faced by AcoD of FW, the synergistic effects and influencing factors of different biomass wastes are discussed, and improvement strategies to improve the performance of AcoD of FW are summarized from different reaction stages of anaerobic digestion. By combing the research progress of AcoD of FW, it provides a reference for the optimization and improvement of the performance of the co-digestion system.

Improving mesophilic anaerobic digestion of food waste by side-stream thermophilic reactor: Activation of methanogenic, key enzymes and metabolism

Anaerobic digestion (AD) is a favorable way to convert organic pollutants, such as food waste (FW), into clean energy through microbial action. This work adopted a side-stream thermophilic anaerobic digestion (STA) strategy to improve a digestive system's efficiency and stability. Results showed that the STA strategy brought higher methane production as well as higher system stability. It quickly adapted to thermal stimulation and increased the specific methane production from 359 mL CH₄/g·VS to 439 mL CH₄/g·VS, which was also higher than 317 mL CH₄/g·VS from single-stage thermophilic anaerobic digestion. Further exploration of the mechanism of STA using metagenomic and metaproteomic analysis revealed enhanced activity of key enzymes. The main metabolic pathway was up-regulated, while the dominant bacteria were concentrated, and the multifunctional Methanosarcina was enriched. These results indicate that STA optimized organic metabolism patterns, comprehensively promoted methane production pathways, and formed various energy conservation mechanisms. Further, the system's limited heating avoided adverse effects from thermal stimulation, and activated enzyme activity and heat shock proteins through circulating slurries, which improved the metabolic process, showing great application potential.

Impact of carbon monoxide on performance and microbial community of extreme-thermophilic hydrogenotrophic methanation in horizontal rotary bioreactor

A novel horizontal rotary bioreactor was developed for upgrading biogas from coke oven gas at extreme-thermophilic condition. The introduction of CO decreased the outlet methane content from 80% to 50% due to insufficient H₂. This hindrance was overcome by increasing the proportion of incoming hydrogen, coupled with a prolonged gas retention time from 24 to 72 h, leading to a restoration of methane content to 91.6%. Notably, CO and CO₂ exhibited a competitive relationship to hydrogen, which was determined by their contents. The substitution of Methanothermobacter for Methanobacterium as the dominant genus was observed at 70°C, with relative abundance exceeding 98%. Incorporation of CO increased bacteria diversity and fostered a syntrophic relationship between the bacterial community and M. thermautotrophicus. This study provides both theoretical basis and practical support for biogas upgrading from coke oven gas using a biofilm reactor, thus aiding its future industrialization prospects.

Bioaugmentation with marine sediment-derived microbial consortia in mesophilic anaerobic digestion for enhancing methane production under ammonium or salinity stress

Ammonium (NH₄⁺) and salinity (NaCl) inhibit CH₄ production in anaerobic digestion. However, whether bioaugmentation using marine sediment-derived microbial consortia can relieve the inhibitory effects of NH₄⁺ and NaCl stresses on CH₄ production remains unclear. Thus, this study evaluated the effectiveness of bioaugmentation using marine sediment-derived microbial consortia in alleviating the inhibition of CH₄ production under NH₄⁺ or NaCl stress and elucidated the underlying mechanisms. Batch anaerobic digestion experiments under 5 gNH₄-N/L or 30 g/L NaCl were performed with or without augmentation using two marine sediment-derived microbial consortia pre-acclimated to high NH₄⁺ and NaCl. Compared with non-bioaugmentation, bioaugmentation reinforced CH₄ production. Network analysis revealed the joint effects of microbial connections by Methanoculleus, which promoted the efficient consumption of propionate accumulated under NH₄⁺ and NaCl stresses. In conclusion, bioaugmentation with pre-acclimated marine sediment-derived microbial consortia can mitigate the inhibition under NH₄⁺ or NaCl stress and enhance CH₄ production in anaerobic digestion.

Biomethane recovery through co-digestion of cheese whey and glycerol in a two-stage anaerobic fluidized bed reactor: Effect of temperature and organic loading rate on methanogenesis

Anaerobic digestion for CH₄ recovery in wastewater treatment has been carried out with different strategies to increase process efficiency, among which co-digestion and the two-stage process can be highlighted. In this context, this study aimed at evaluating the co-digestion of cheese whey and glycerol in a two-stage process using fluidized bed reactors, verifying the effect of increasing the organic loading rate (OLR) (2-20 g-COD.L^-1.d^-1) and temperature (thermophilic and mesophilic) in the second stage methanogenic reactor. The mesophilic methanogenic reactor (R-Meso) (mean temperature of 22 °C) was more tolerant to high OLR and its best performance was at 20 g-COD.L^-1.d^-1, resulting in methane yield (MY) and methane production (MPR) of 273 mL-CH₄.g-COD^-1 and 5.8 L-CH₄.L^-1.d^-1 (with 67% of CH₄), respectively. Through 16S rRNA gene massive sequencing analysis, a greater diversity of microorganisms was identified in R-Meso than in R-Thermo (second stage methanogenic reactor, 55 °C). Firmicutes was the phyla with higher relative abundance in R-Thermo, while in R-Meso the most abundant ones were Proteobacteria and Bacteroidetes. Regarding the Archaea domain, a predominance of hydrogenotrophic microorganisms could be observed, being the genera Methanothermobacter and Methanobacterium the most abundant in R-Thermo and R-Meso, respectively. The two-stage system composed with a thermophilic acidogenic reactor + R-Meso was more adequate for the co-digestion of cheese whey and glycerol than the single-stage process, promoting increases of up to 47% in the energetic yield (10.3 kJ.kg-COD^-1) and 14% in organic matter removal (90.5%).

Potential of hydrochar/pyrochar derived from sawdust of oriental plane tree for stimulating methanization by mitigating propionic acid inhibition in mesophilic anaerobic digestion of swine manure

VFAs accumulation in anaerobic digestion systems can lead to disturbance of the acid base balance, which has brought major challenges for methane production. Meanwhile, less research explored the potential of biochar derived from wood wastes of oriental plane tree (Platanus orientalis L.) for stimulating methanization in mesophilic anaerobic digestion. In this study, the effects of pyrochar and hydrochar derived from sawdust of oriental plane tree on mesophilic anaerobic digestion of swine manure were compared for the first time. Fourier infrared transform analysis indicated that more functional groups existed on the surface of hydrochar, whereas higher ash content and BET specific surface area were found in pyrochar. The maximum methane production rate during anaerobic digestion was observed in the pyrochar treatment, which increased by 59.5% compared with the control without biochar. Although stimulative effects on dissolved organic carbon and volatile fatty acids production were both observed in the pyrochar and hydrochar treatments, the pyrochar treatment was much easier to trigger multipath methanogenesis and direct interspecific electron transport and subdue propionic acid accumulation compared to the hydrochar treatment. Moreover, redundancy analysis indicated that the variations in acetic acid and dissolved organic carbon were mostly associated with microbial succession. These results suggest that pyrochar has better promoting effects than HC in terms of methane generation and propionic acid inhibition alleviation owing to its special porous structures, functional groups (e.g., C=O, C-O and O-H), and physicochemical properties. These excellent properties play a greater role in recruiting functional archaea and bacteria to regulate the levels of volatile fatty acids and dissolved organic carbon to enhance the methane yield of anaerobic digestion. This study provides novel and valuable information for further engineering applications of pyrochar and hydrochar derived from sawdust of oriental plane tree in energy production and environmental waste treatment.

Intermittent aeration to reduce gaseous emission and advance humification in food waste digestate composting: Performance and mechanisms

This study investigated the performance and mechanisms of intermittent aeration to regulate gaseous emission and humification during food waste digestate composting. In addition to continuous aeration, three intermittent aeration regimes were conducted with the on-off interval ratio at 3:1, 2:1, and 1:1 within each 30 min, respectively. Results showed that intermittent aeration regimes reduced gaseous emission and enhanced humification during composting. In particular, intermittent aeration with the on/off ratio of 1:1 was more effective to reduce organic mineralization than other regimes, which alleviated the emission of nitrous oxide and ammonia by 63.1% and 75.7% in comparison with continuous aeration, respectively. In addition, this aeration regime also enhanced the content of humic acid by 24.1%. Further analysis demonstrated that prolonging aeration-off intervals could enrich facultative bacteria (e.g. Atopobium and Clostridium) from digestate and inhibit the proliferation of several aerobic bacteria (e.g. Caldicoprobacter and Marinimicrobium) to retard organic mineralization for humification.

Archaea and their interactions with bacteria in a karst ecosystem

Karst ecosystems are widely distributed around the world, accounting for 15-20% of the global land area. However, knowledge on microbial ecology of these systems does not match with their global importance. To close this knowledge gap, we sampled three niches including weathered rock, sediment, and drip water inside the Heshang Cave and three types of soils overlying the cave (forest soil, farmland soil, and pristine karst soil). All these samples were subjected to high-throughput sequencing of V4-V5 region of 16S rRNA gene and analyzed with multivariate statistical analysis. Overall, archaeal communities were dominated by Thaumarchaeota, whereas Actinobacteria dominated bacterial communities. Thermoplasmata, Nitrosopumilaceae, Aenigmarchaeales, Crossiella, Acidothermus, and Solirubrobacter were the important predictor groups inside the Heshang Cave, which were correlated to NH₄ ⁺ availability. In contrast, Candidatus Nitrososphaera, Candidatus Nitrocosmicus, Thaumarchaeota Group 1.1c, and Pseudonocardiaceae were the predictors outside the cave, whose distribution was correlated with pH, Ca²⁺, and NO₂ ^-. Tighter network structures were found in archaeal communities than those of bacteria, whereas the topological properties of bacterial networks were more similar to those of total prokaryotic networks. Both chemolithoautotrophic archaea (Candidatus Methanoperedens and Nitrosopumilaceae) and bacteria (subgroup 7 of Acidobacteria and Rokubacteriales) were the dominant keystone taxa within the co-occurrence networks, potentially playing fundamental roles in obtaining energy under oligotrophic conditions and thus maintaining the stability of the cave ecosystem. To be noted, all the keystone taxa of karst ecosystems were related to nitrogen cycling, which needs further investigation, particularly the role of archaea. The predicted ecological functions in karst soils mainly related to carbohydrate metabolism, biotin metabolism, and synthesis of fatty acid. Our results offer new insights into archaeal ecology, their potential functions, and archaeal interactions with bacteria, which enhance our understanding about the microbial dark matter in the subsurface karst ecosystems.

A Review of Basic Bioinformatic Techniques for Microbial Community Analysis in an Anaerobic Digester

Biogas production involves various types of intricate microbial populations in an anaerobic digester (AD). To understand the anaerobic digestion system better, a broad-based study must be conducted on the microbial population. Deep understanding of the complete metagenomics including microbial structure, functional gene form, similarity/differences, and relationships between metabolic pathways and product formation, could aid in optimization and enhancement of AD processes. With advancements in technologies for metagenomic sequencing, for example, next generation sequencing and high-throughput sequencing, have revolutionized the study of microbial dynamics in anaerobic digestion. This review includes a brief introduction to the basic process of metagenomics research and includes a detailed summary of the various bioinformatics approaches, viz., total investigation of data obtained from microbial communities using bioinformatics methods to expose metagenomics characterization. This includes (1) methods of DNA isolation and sequencing, (2) investigation of anaerobic microbial communities using bioinformatics techniques, (3) application of the analysis of anaerobic microbial community and biogas production, and (4) restriction and prediction of bioinformatics analysis on microbial metagenomics. The review has been concluded, giving a summarized insight into bioinformatic tools and also promoting the future prospects of integrating humungous data with artificial intelligence and neural network software.

Untangling the effect of solids content on thermal-alkali pre-treatment and anaerobic digestion of sludge

Total solids (TS) content is critical for thermal hydrolysis and anaerobic digestion (AD) performance, but its role in thermal-alkaline pre-treatment (TAP) is unclear. Therefore, this study aimed to reveal the key role of TS content in TAP and AD of waste activated sludge. The results showed that the optimum TS content of TAP (at 90 °C for 1 h, pH = 10) was 8 %. Sludge disintegration and methane production increased from 19.7 ± 2.2 % to 34.3 ± 2.9 % and from 167.4 ± 4.2 to 246.0 ± 6.2 mL/g volatile solids, respectively, when TS content were increased from 2 % to 8 %. A high TS content will likely promote sludge disintegration since it will reduce heat loss and improve heating efficiency. Additionally, increasing TS content from 2 % to 10 % minimized the production of intracellular reactive oxygen species by 30.4 ± 0.7 % and increased cell viability by 11.5 ± 2.6 %. In contrast, excessive TS content (i.e., ≥10 %) deteriorated the fluidity of sludge, which prevents it from disintegration. Once TS reached 10 %, the accumulation of ammonia nitrogen and volatile fatty acids reached 812.7 ± 27.4 and 1932.0 ± 5.3 mg/L, respectively, which reduced the activity of acidulase and coenzyme F420 and shifted the archaeal community from acetylotrophic to hydrogenotrophic methanogens. This article provides new insights into the TS content in TAP and AD technology.

Effect of hydrothermal pretreatment and compound microbial agents on compost maturity and gaseous emissions during aerobic composting of kitchen waste

Though aerobic composting is commonly used in kitchen waste (KW) disposal, the high-oil and high-salt characteristics of KW could affect composting efficiency and lead to the land using risk of produced fertilizer. The impact of hydrothermal pretreatment (HTP) and addition of compound microbial agent (CMA) on compost maturity, greenhouse gas (GHGs) emissions and bacterial community during the kitchen waste composting were evaluated in the present work. Results indicated that N2O, CH4 and CO2 emissions from treatment by HTP and CMA addition were reduced by 82.72%, 13.77% and 20.78 %, respectively, comparing with the control (without HTP and without CMA addition). The seed germination index (GI) value of the HTP and CMA addition treatment was 1.03 and had the highest maturity in all treatments. Furthermore, the bacterial community analysis indicated that CMA inoculation could increase the relative abundance of genus Bacillus at the thermophilic stage of composting to accelerate organic biodegradation. This work provided important insight into mitigating GHGs emissions and improving compost quality in kitchen waste composting.

Dynamics of microbial community in response to co-feedstock composition in anaerobic digestion

To enable the utilization of seasonal biomasses in e.g., farm-scale biogas plants, the process should be flexible and ensure stable gas production. However, information about microbial community dynamics in long-term co-digestion with versatile co-feedstocks is lacking. This study investigated the effects of co-feedstock changes on the performance and evolution of microbial consortia during 428-day anaerobic digestion of cow slurry. Co-feedstocks consisted of hydrocarbon-, protein- and lipid-rich materials. A high throughput 16S ribosomal RNA gene sequencing was used to analyze the taxonomic profile of microbial communities. Due to the low loading rate, the changes were subtle in bacteria, but a shift on archaeal genera in response to different and changing feedstock compositions was observed. Despite drastic changes in co-feedstock composition, stable and flexible anaerobic digestion with relatively constant core microbiome can be achieved with cautious operation of the process.

Energy recovery from high ash-containing sewage sludge: Focusing on performance evaluation of bio-fuel production

Hydrothermal liquefaction (HTL) has shown great potential to convert sewage sludge (SS) with high moisture into bio-crude. However, the disposal and reutilization of hydrothermal liquefaction wastewater (HTLWW) is a critical issue. Anaerobic digestion (AD) is proven to be an alternative to treat organic wastewater. Therefore, energy recovery from high ash-containing SS was studied by integrating AD with HTL. The effect of temperature on HTL efficiency was investigated and then methane production from HTLWW was conducted by AD with organic loading increasing from 2 g COD/L to 6 g COD/L. Results showed that the maximum bio-crude yield of 23.5 % was obtained at 350 °C. Methane yield of 309.4 mL CH₄/g COD_removed was achieved at 2 g COD/L with COD removal rate of 72.5 %. Meanwhile, the microbial structure and abundance showed great shifts resulting from the adaptation to complex compounds. JGI-000079-D21, Aminicenantales, and Bacteroidetes_ vadinHA17 predominated in the bacterial community. Due to the presence of the toxic substances in HTLWW, such as phenolic and nitrogenous heterocyclic compounds, there was a decrease in methane yield when the organic loading was higher than 4 g COD/L. The organic matters in extracellular polymeric substances (EPS) were rich in fulvic acid-like and humic acid-like substances due to the attack and stimulation of toxicants. Under the condition of unstable fermentation, Advenella and Bacillus first appeared as phenol and pyridine degrading bacteria, respectively. The microbial diversity declined sharply to demonstrate the toxic effect of the refractory organics existing at high organic loading. The enrichment of Methanosaeta in methanogens meant that acetotrophic metabolism is the dominant pathway in methanogenesis. In this study, the profile of bio-fuel production from high ash-containing SS would provide an integrated reference to treat wet biomass and recover energy simultaneously.

Potentiality of recovering bioresource from food waste through multi-stage Co-digestion with enzymatic pretreatment

Food waste (FW) is not only a major social, nutritional and environmental issue, but also an underutilized resource with significant energy, which has not been fully explored currently. Considering co-digestion can adjust carbon to nitrogen ratio (C/N) of the feedstock and improve the synergetic interactions among microorganisms, anaerobic co-digestion (AnCoD) is then becoming an emerging approach to achieve higher energy recovery from FW while ensuring the stability of the system. To obtain higher economic gain from such biodegradable wastes, increasing attention has been paid on optimizing the system configuration or applying enzymatic hydrolysis before digesting FW. A better understanding on the potentiality of correlating enzymatic pretreatment and AnCoD operated in various system configuration would enhance the bioresource recovery from FW and increase revenue through treating this organic waste. Specifically, the biobased chemicals outputs from FW-related co-digestion system with different configuration were firstly compared in this review. A deep discussion concerning the challenges for achieving bioresources recovery from FW co-digestion systems with enzymatic pretreatment was then given. Recommendations for future studies regarding FW co-digestion were then proposed at last.

Combining high pressure homogenization with free nitrous acid pretreatment to improve anaerobic digestion of sewage sludge

Single pretreatment of sewage sludge, either physical, chemical or biological, has its own drawbacks in term of poor sanitization, energy intensity and high operational and capital cost. To tackle these drawbacks, combined high pressure homogenization (HPH) and free nitrous acid (FNA) pretreatment for sludge solubilization and further biodegradation in anaerobic digestion was investigated. Synergistic effect of combined HPH (40 MPa) and FNA (2.49 mg/L) pretreatment (HPH-FNA) for improving anaerobic digestion was evaluated, and its effect on archaeal and bacterial community structure was analyzed. Compared with single HPH and FNA pretreatments, HPH-FNA pretreatment efficiently solubilized wasted activated sludge (WAS), subsequently improved anaerobic digestion. Cumulative biogas production from sewage sludge pretreated with HPH-FNA was 154%, 108% and 284% more than that with single pretreatment of FNA, HPH and raw sludge, respectively. In addition, volumetric biogas production of combined pretreatment system (815 ml) was more than the sum from single pretreatment (710 ml). Methane content in biogas for raw sludge, FNA, HPH and HPH-FNA pretreated sludge was 45%, 51%, 55% and 65%, respectively. Illumina MiSeq sequencing analysis revealed that HPH-FNA pretreatment promoted bacterial growth of phyla Bacteroidetes, Firmicutes and Synergistetes and archaeal genera Methanospirillum and Methanosaeta. Overall, combined HPH-FNA pretreatment of sewage sludge, prior to anaerobic digestion, is an environmentally-friendly and potentially economic technology.

Effects of various materials used to promote the direct interspecies electron transfer on anaerobic digestion of low-concentration swine manure

The activation of direct interspecies electron transfer (DIET) by the supplementation of conductive materials is one of the effective and available methods to enhance anaerobic digestion (AD). Microorganisms that colonize the surface of these materials form biofilms, the study of which could provide new insights into the character of the DIET process and its effect on AD. The present study focused on AD performance, microbial community, as well as morphological and topological features of biofilms on various materials used to promote DIET during AD of low-concentration swine manure. The best AD characteristics were observed in stainless steel mesh (SM)/digested cow manure (CM) and polyester felt (PF)/digested sewage sludge (SS) combinations used as material/inoculum, respectively. Thus, potential methane yields in CM-SM and SS-PF were up to 26.4% and 26.2% higher compared to the corresponding controls. Microbial analysis of biofilms revealed the dominance of putatively syntrophic bacteria of the MBA03 group of the Limnochordia class in CM inoculated reactors, and syntrophic proteolytic bacteria of the genus Coprothermobacter and acetogenic Clostridium sensu stricto 1, known for their ability to carry out DIET, in SS inoculated reactors. Biofilms on non-conductive materials contained pili-like structures, which were observed only in SS inoculated reactors. Polyester felt tended to biofoul better than carbon felt, resulting in up to 2.8, 3.2 and 1.8 higher nucleic acid, extracellular polymeric substances, and total biomass content, respectively, depending on the inoculum. These results provide new insights into the different types of DIET that can occur in low-loaded AD systems with attached growth.

Polycyclic aromatic hydrocarbons stimulate acidogenesis, acetogenesis and methanogenesis during anaerobic co-digestion of waste activated sludge and food waste

Polycyclic aromatic hydrocarbons (PAHs) have been reported to influence acetic acid production during anaerobic treatment. However, investigations of the impacts of PAHs on the anaerobic co-digestion of waste activated sludge and food waste are limited. Therefore, the effects of PAHs on anaerobic co-digestion were explored in this study. Four kinds of PAHs all exhibited positive contributions to methane production, especially phenanthrene. Mechanism exploration revealed that acidogenesis, acetogenesis, and methanogenesis were improved in the presence of phenanthrene, and acetotrophic methanogenesis had the greatest improvement with 69.4%. Dominant bacteria and archaea related to acetic acid and methane accumulation were changed by phenanthrene. Moreover, extracellular polymeric substances, coenzyme F₄₂₀, and McrA gene copy number were promoted by phenanthrene, which was beneficial for the generation of acetic acid and methane. Overall, this study provides new insights into the role of organic pollutants in the anaerobic co-digestion of solid wastes.

Succession of Microbial Community during the Co-Composting of Food Waste Digestate and Garden Waste

Microorganisms are of critical importance during the composting process. The aim of this study was to reveal the bacterial and fungal compositions of a composting pile of food waste digestate and garden waste, where the succession of the microbial communities was monitored using Illumina MiSeq sequencing. We explored the efficiency of composting of different microorganisms to judge whether the composting system was running successfully. The results showed that the composting process significantly changed the bacterial and fungal structure. Firmicutes, Proteobacteria, and Bacteroidota were the dominant phyla of the bacterial communities, while Ascomycota was the dominant phylum of the fungal communities. Moreover, the highest bacterial and fungal biodiversity occurred in the thermophilic stage. The physical and chemical properties of the final compost products conformed to the national standards of fertilizers. The efficient composting functional microbes, including Cladosporium, Bacillus and Saccharomonospora, emerged to be an important sign of a successfully operating composting system.

Thermally enhanced bioremediation: A review of the fundamentals and applications in soil and groundwater remediation

Thermally enhanced bioremediation (TEB), a new concept proposed in recent years, explores the combination of thermal treatment and bioremediation to address the challenges of the low efficiency and long duration of bioremediation. This study presented a comprehensive review regarding the fundamentals of TEB and its applications in soil and groundwater remediation. The temperature effects on the bioremediation of contaminants were systematically reviewed. The thermal effects on the physical, chemical and biological characteristics of soil, and the corresponding changes of contaminants bioavailability and microbial metabolic activities were summarized. Specifically, the increase in temperature within a suitable range can proliferate enzymes enrichment, extracellular polysaccharides and biosurfactants production, and further enhancing bioremediation. Furthermore, a systematic evaluation of TEB applications by utilizing traditional in situ heating technologies, as well as renewable energy (e.g., stored aquifer thermal energy and solar energy), was provided. Additionally, TEB has been applied as a biological polishing technology post thermal treatment, which can be a cost-effective method to address the contaminants rebounds in groundwater remediation. However, there are still various challenges to be addressed in TEB, and future research perspectives to further improve the basic understanding and applications of TEB for the remediation of contaminated soil and groundwater are presented.

Composition Characterization and Transformation Mechanism of Dissolved Organic Matters in a Full-Scale Membrane Bioreactor Treating Co-Digestion Wastewater of Food Waste and Sewage Sludge

The membrane bioreactor (MBR) serves as the most widely used technology in anaerobic digestion wastewater treatment, but the composition and transformation of the dissolved organic matters (DOMs) are vague. This study focused on the composition characterization and transformation mechanism of DOMs in real co-digestion wastewater of food waste and sewage sludge from a full-scale MBR via molecular weight cut-off, 3D-EEM, FT-IR, and SPME-GC/MS. The results indicated that the co-digestion wastewater mainly comprised organics with molecular weight (MW) lower than 1 kDa and dominated by tryptophane-protein-like substances. The hydrolytic/acidogenic process improved the biodegradability with the conversion of high-MW organics into low-MW organics, while the two-stage A/O process possessed the highest contribution to the organic removal with the consumption of most DOMs. However, the deficient removal of refractory organics (MW < 5 kDa) in the ultrafiltration unit led to the residual DOMs in the effluent. The potential functional bacteria in the biological processes have also been identified and were principally affiliated with Proteobacteria and Firmicutes. These findings could help to advance the understanding of the co-digestion wastewater and provide fundamental information for the optimization and development of MBR in anaerobic digestion wastewater treatment.

Effect of different microbial seeds on batch anaerobic digestion of fish waste

Initial microbial compositions would be the precursor for the efficient anaerobic digestion (AD) of fish waste (FW). A mesophilic batch test was conducted using four seeds collected from different digesters treating various combinations of substrates to investigate their effects on FW degradation. Key microbial groups were identified by 16s rRNA gene-based metagenomics analysis. Among four, the seed from the digester co-digesting livestock manure, food waste, and food wastewater showed the best performance and obtained the highest methane yield (350.5 ± 5.2 mL/gVS_added) and lowest lag phase (0.6 ± 0.1 d). Proteiniphilum, Aminobacterium, dgA-11 gut group, and Syntrophomonas were dominant bacterial genera identified in FW degradation. Methanosaeta was the dominant methanogen in the best performing seed and microbial network analysis revealed its contribution to achieving the highest CH₄ yield. Obtained results could be useful in selecting microbial seed sources to avoid system imbalance in full-scale digesters that treat FW.

Bacterial Community Structure and Predicted Metabolic Function of Landfilled Municipal Solid Waste in China

The biodegradation behavior of municipal solid waste (MSW) depends on the diversity and metabolic function of bacterial communities, which are affected by environmental factors. However, the diversity of the bacterial communities and metabolic functions in MSW, as well as their influencing factors, remain unclear. In deep-aged MSW, the abovementioned deficiencies are more significant, and will effectively hamper landfill disposal. In this study, high-throughput sequencing was performed to examine the bacterial community structure and metabolic function from depths of 10 m to 40 m, of two large MSW landfills on the southeast coast of China. Thermotogota (1.6–32.0%), Firmicutes (44.2–77.1%), and Bacteroidota (4.0–34.3%) were the three dominant phyla among the 39 bacterial phyla identified in aged MSW samples. Bacterial genera associated with the degradation of many macromolecules, e.g., Defluviitoga, Hydrogenispora, and Lentimicrobium were abundantly detected in MSW samples, even in aged MSW. Redundancy analysis (RDA) showed that bacterial diversity in the landfills was most strongly correlated with electrical conductivity, age, and moisture content of the MSW. Tax4fun2 analysis predicted that there were abundant metabolism functions in aged MSW, especially functional enzymes (e.g., glycine dehydrogenase and cellulase) related to amino acids and cellulose degradation. This study increases our understanding of the bacterial diversity and functional characteristics in landfilled MSW.

Use of activated carbon to reduce ammonia emissions and accelerate humification in composting digestate from food waste

Management of digestate from food waste (DFW) is becoming the bottleneck of the food waste anaerobic digestion. Composting is a feasible method to dispose the DFW and convert it to organic fertilizer; however, high ammonia (NH₃) emissions and long composting time are key concerns in this process. In this study, the mechanism of activated carbon (AC) on the loss of NH₃ and humification during DFW composting was investigated. The use of AC could promote humification, shorten 50% of the DFW composting period, and decrease the NH₃ emissions by 34%. Results of the microbial analysis indicated that the AC could promote the growth of key microbes (i.e., Wallemia genus for fungi; and Fastidiosipila genus for bacteria). The Cladosporium and Fastidiosipila genera developed in the fractions closely and loosely attached to the AC, respectively, leading to faster degradation of lignocellulose matter. In addition, AC could enrich the Ammoniibacillus genus, reducing nitrogen loss.

Microbial Activity during Composting and Plant Growth Impact: A Review

Replacing harmful chemical pesticides with compost extracts is steadily gaining attention, offering an effective way for plant growth enhancement and disease management. Food waste has been a major issue globally due to its negative effects on the environment and human health. The methane and other harmful organisms released from the untreated waste have been identified as causes of this issue. Soil bacteria impart a very important role in biogeochemical cycles. The interactions between plants and bacteria in the rhizosphere are some of the factors that determine the health and fertility of the soil. Free-living soil bacteria are known to promote plant growth through colonizing the plant root. PGPR (Plant Growth Promoting Rhizobacteria) inoculants in compost are being commercialized as they help in the improvement of crop growth yield and provide safeguard and resistance to crops from disease. Our focus is to understand the mechanism of this natural, wet waste recycling process and implementation of a sustainable operative adaptation with microbial association to ameliorate the waste recycling system.

Effect of type of coagulants on removal efficiency and removal mechanisms of antibiotic resistance genes in anaerobic digestion of primary sludge produced via a chemically enhanced primary treatment process

The potential impact of the trivalent coagulant cations on the removal mechanisms, removal efficiencies and removal patterns of antibiotic resistance genes (ARGs) during anaerobic digestion (AD) of chemically enhanced primary treatment sludge (CEPTS) was investigated using polyaluminium chloride (PACl), ferric chloride (FeCl₃) and mixed FeCl₃-PACl. The removal efficiency of 23 ARGs and intI1 improved to 72.1% in AD of primary sludge with 100 mg/L FeCl₃ and was lowest (only 54.4 %) in AD of primary sludge with 25 mg/L PACl. The removal of ARGs in AD of CEPTS with addition of single or mixed types of Al-based coagulant began to increase rapidly at the onset of batch operation. On the other hand, both the rapid increase in the removal efficiency of ARGs in AD with FeCl₃ and the maximum removal efficiency were attained later than in the other ADs.

Distribution patterns of functional microbial community in anaerobic digesters under different operational circumstances: A review

Anaerobic digestion (AD) processes are promising to effectively recover resources from organic wastes or wastewater. As a microbial-driven process, the functional anaerobic species played critical roles in AD. However, the lack of effective understanding of the correlations of varying microbial communities with different operational factors hinders the microbial regulation to improve the AD performance. In this paper, the main anaerobic functional microorganisms involved in different stages of AD processes were first demonstrated. Then, the response of anaerobic microbial community to different operating parameters, exogenous interfering substances and digestion substrates, as well as the digestion efficiency, were discussed. Finally, the research gaps and future directions on the understanding of functional microorganisms in AD were proposed. This review provides insightful knowledge of distribution patterns of functional microbial community in anaerobic digesters, and gives critical guidance to regulate and enrich specific functional microorganisms to accumulate certain AD products.

Effects of graphite, graphene, and graphene oxide on the anaerobic co-digestion of sewage sludge and food waste: Attention to methane production and the fate of antibiotic resistance genes

This study explored and compared the influence of graphite, graphene, and graphene oxide (GO) on the performance of anaerobic co-digestion fed with sewage sludge and food waste, the variations of antibiotic resistance genes (ARGs), and the evolution of microbial community. Graphene exhibited the best performance for improving methane production and organic degradation, which increased by 36.09% and 23.07% compared with control group. The experimental results showed that graphene had the greatest influence on the removal efficiency of blaOXA-1, macrolide resistance genes (ermF and ermB), and some tetracycline resistance genes (tetQ and tetX); however, the removal efficiency of sulfonamide resistance genes (sul1 and sul2), intI1, and some tetracycline resistance genes (tetM, tetO, and tetW) were highest when GO was added. Network analysis indicated that the host cells of mefA, ermB, and tetO were different from other ARG host cells; moreover, graphene controlled the horizontal transfer of ARGs between microbial communities.

Efficiency and microbial diversity of aeration solid-phase denitrification process bioaugmented with HN-AD bacteria for the treatment of low C/N wastewater

To evaluate the simultaneous nitrification and denitrification (SND) performance of the aeration solid-phase denitrification (SPD) process and improve the operating efficiency, aeration SPD process using polybutanediol succinate as carbon source was optimized and the process was bioaugmented with heterotrophic nitrification-aerobic denitrification bacteria for the treatment of real wastewater. The results showed that after bioaugmentation, the total nitrogen removal efficiency of the aeration SPD process increased by 50.46 % under condition of dissolved oxygen (DO) 3 mg/L. According to Illumina MiSeq sequencing and correlation analyses, the microbial community can perform SND under the conditions of DO 5 mg and HRT 6 h, but is susceptible to DO. Bioaugmentation mainly affected the carbon source metabolic network with heterotrophic bacteria Methyloversatilis, Thiothrix, and norank_Lentimicrobiaceae as nodes to change the community structure, thereby improving the performance of the functional microbial community. Kyoto Encyclopedia of Genes and Genomes analysis suggested that narB, narG, narH, nirK and narI were the key genes involved in the response to bioaugmentation. This work provides new insights for the application of the SPD process in wastewater treatment.

Operational and biochemical aspects of co-digestion (co-AD) from sugarcane vinasse, filter cake, and deacetylation liquor

This work performed co-AD from the vinasse and filter cake (from 1G ethanol production) and deacetylation liquor (from the pretreatment of sugarcane straw for 2G ethanol production) in a semi-Continuous Stirred Tank Reactor (s-CSTR) aiming to provide optimum operational parameters for continuous CH₄ production. Using filter cake as co-substrate may allow the reactor to operate throughout the year, as it is available in the sugarcane off-season, unlike vinasse. A comparison was made from the microbial community of the seed sludge and the reactor sludge when CH₄ production stabilized. Lactate, butyrate, and propionate fermentation routes were denoted at the start-up of the s-CSTR, characterizing the acidogenic phase: the oxidation-reduction potential (ORP) values ranged from -800 to -100 mV. Once the methanogenesis was initiated, alkalizing addition was no longer needed as its demand by the microorganisms was supplied by the alkali characteristics of the deacetylation liquor. The gradual increase of the applied organic load rates (OLR) allowed stabilization of the methanogenesis from 3.20 g_VS L^-1 day^-1: the highest CH₄ yield (230 mL_NCH₄ g^-1_VS) and average organic matter removal efficiency (83% ± 13) was achieved at ORL of 4.16 g_VS L^-1 day^-1. The microbial community changed along with the reactor operation, presenting different metabolic routes mainly due to the used lignocellulosic substrates. Bacteria from the syntrophic acetate oxidation (SAO) process coupled to hydrogenotrophic methanogenesis were predominant (~ 90% Methanoculleus) during the CH₄ production stability. The overall results are useful as preliminary drivers in terms of visualizing the co-AD process in a sugarcane biorefinery integrated to scale. KEY POINTS: • Integration of 1G2G sugarcane ethanol biorefinery from co-digestion of its residues. • Biogas production from vinasse, filter cake, and deacetylation liquor in a semi-CSTR. • Lignocellulosic substrates affected the biochemical routes and microbial community. • Biomol confirmed the establishment of the thermophilic community from mesophilic sludge.

Examination of single-stage anaerobic and anoxic/aerobic and dual-stage anaerobic-anoxic/aerobic digestion to remove pharmaceuticals from municipal biosolids

Many trace contaminants of emerging concern (CECs) including a number of pharmaceutically active compounds are not effectively removed during conventional wastewater treatment processes and instead accumulate in wastewater sludge. Unfortunately, many existing sludge stabilization treatments such as anaerobic digestion (AD) also have limited effectiveness against many of these CECs including the four pharmaceuticals ibuprofen, diclofenac, carbamazepine, and azithromycin which can then enter the environment through the disposal or land application of biosolids. Single-stage AD, single-stage cycling aerobic-anoxic (AERO/ANOX) and sequential digesters (AD followed by an AERO/ANOX digester) at sludge retention times (SRT) of 5 to 20-days were evaluated side-by-side to assess their effectiveness in removing pharmaceuticals and conventional organic matter. Single-stage ADs (35 °C) and AERO/ANOX (22 °C) digesters effectively removed total solids while sequential AD + AERO/ANOX digesters offered further improvements. Ibuprofen was not effectively removed during AD and resulted in up to a 23 ± 8% accumulation. However, ibuprofen was completely removed during AERO/ANOX digestion and in several sequential digestion scenarios. Each type of digestion was less effective against carbamazepine with slight (3 ± 2%) accumulations to low levels (14 ± 1%) of removals in each type of digestion studied. Diclofenac was more effectively removed with up 30 ± 3% to 39 ± 4% reductions in the single-stage digesters (AD and AERO/ANOX, respectively). While sequential digestion scenarios with the longest aerobic SRTs significantly increased diclofenac removals from their first-stage digesters, scenarios with the longest anaerobic SRTs actually decreased removals from first-stage digesters, possibly due to reversible biotransformation of diclofenac conjugates/metabolites. Up to 43 ± 6% of azithromycin was removed in AERO/ANOX digesters, while the best performing sequential-digester scenario removed up to 63 ± 7% of azithromycin. This study shows that different digester configurations can reduce the CEC burden in biosolids while also greatly reducing their volumes for disposal, although none can remove CECs completely.

Key factors driving the fate of antibiotic resistance genes and controlling strategies during aerobic composting of animal manure: A review

Occurrence of antibiotic resistance genes (ARGs) in animal manure impedes the reutilization of manure resources. Aerobic composting is potentially effective method for resource disposal of animal manure, but the fate of ARGs during composting is complicated due to the various material sources and different operating conditions. This review concentrates on the biotic and abiotic factors influencing the variation of ARGs in composting and their potential mechanisms. The dynamic variations of biotic factors, including bacterial community, mobile genetic elements (MGEs) and existence forms of ARGs, are the direct driving factors of the fate of ARGs during composting. However, most key abiotic indicators, including pH, moisture content, antibiotics and heavy metals, interfere with the richness of ARGs indirectly by influencing the succession of bacterial community and abundance of MGEs. The effect of temperature on ARGs depends on whether the ARGs are intracellular or extracellular, which should be paid more attention. The emergence of various controlling strategies renders the composting products safer. Four potential removal mechanisms of ARGs in different controlling strategies have been concluded, encompassing the attenuation of selective/co-selective pressure on ARGs, killing the potential host bacteria of ARGs, reshaping the structure of bacterial community and reducing the cell-to-cell contact of bacteria. With the effective control of ARGs, aerobic composting is suggested to be a sustainable and promising approach to treat animal manure.

Enrichment of thermophilic methanogenic microflora from mesophilic waste activated sludge for anaerobic digestion of garbage slurry

This study investigated a startup strategy for thermophilic methanogenic enrichment. Conventional waste activated sludge (WAS) was used as the seed. The WAS seed was incubated at 55 °C in a continuous-flow stirred tank reactor, with garbage slurry fed continuously as a substrate. One of the two reactors (termed reactor-high, RH) was fed with a high concentration of substrate (30 g-COD/L), while the other (reactor-low, RL) received a lower concentration of feed (15 g-COD/L). The specific organic loading rate was 0.2 g-COD/L/day initially, which was gradually increased by shortening the hydraulic retention time. The final OLR was 3.2 g-COD/L/day, after more than 90% of the initial WAS got washed out from the reactor and thermophilic microorganisms became dominant in the reactors. Biogas production rate and methane conversion ratio depended on substrate concentration, although total chemical oxygen demand removal and methane content were almost the same in RH and RL. Biogas production rate in RH was 3.2 times higher than that in RL, while the conversion ratio of RH was 1.6 times higher than that of RL. Quantitative polymerase chain reaction analysis using specific primers for the mcrA gene and high-throughput sequencing analysis of 16S rRNA gene amplicons demonstrated post enrichment differences in the microbial community, relative to that in the WAS. There was no significant difference in the enriched microbial community composition between RH and RL. In conclusion, thermophilic methanogenic microflora can be enriched from mesophilic seeds. Methanothermobacter, Methanosarcina, and other thermophilic bacteria were enriched in the community over time, with these thermophiles collectively accounting for ∼80% of the stable thermophilic community.

Methane production from food waste using a feedback control strategy in a sequencing batch reactor

The performance of a feedback control strategy in the operation of a sequencing batch reactor was evaluated. This strategy uses the online biogas flow measurements to define the duration of the reaction phase of each operating cycle, thereby increasing the energy production of the system and maximizing the methane production rate. The reaction phase is ended when the biogas flow rate reaches a sustained value significantly lower value than the maximum flow rate achieved, as a consequence of the depletion of the soluble chemical oxygen demand. The implementation of the depletion-time control was successful and reached a maximum methane production rate of 1.22 L CH₄/d, showing an average productivity of 0.73 ± 0.3 L CH₄/d. The reaction phase varied from 1.2 to 6 days with hydraulic retention times from 6 to 30 days. The use of this feedback control strategy increased the methane production and the energy production in 80% of the evaluated cycles (from 10.4 to 43.8%) compared to the operation of conventional AD without a control strategy. Furthermore, the strategy is easy to implement since it does not require complex calculations and uses a readily available biogas flow rate sensor.

Bacterial dynamics and functions for gaseous emissions and humification in response to aeration intensities during kitchen waste composting

This study revealed bacteria dynamics and functions for gaseous emissions and humification during kitchen waste composting under different aeration intensities (i.e. 0.24, 0.36, and 0.48 L kg^-1 DM min^-1) using high-throughput sequencing with Functional Annotation of Prokaryotic Taxa. Results show that aeration increase restrained bacteria (e.g. Lactobacillus and Acinetobacter) for fermentation, nitrate reduction, and sulphur/sulphate respiration, but enriched thermophilic bacteria (e.g. Thermomonospora and Thermobifida) for aerobic chemohetertrophy, xylanolysis, cellulolysis, and methylotrophy. Thus, high aeration intensity (i.e. above 0.36 L kg^-1 DM min^-1) effectively alleviated the emission of greenhouse gases and hydrogen sulphide, and meanwhile facilitated the production of humus precursors and ammonia. Nevertheless, humification was limited by the conclusion of composting under high aeration conditions due to the consumption of humus precursors for bacterial activity. Thus, aeration intensity should be regulated at different stages indicated by temperature to balance gaseous emissions and humification during kitchen waste composting.

Novel insights of impacts of solid content on high solid anaerobic digestion of cow manure: Kinetics and microbial community dynamics

High solid anaerobic digestion has become the mainstream technology for sustainable on-farm treatment of solid wastes but has not been optimized with respect to increasing solid content in cow manure (CM). In the present study, CM was batch digested at total solid (TS) of 5%, 10%, 15% and 20% and microbial communities were investigated. The process remained stable up to 15% TS. The biomethane production rate at TS of 10% and 15% was reported to be 352.2 mL g^-1 VS and 318.6 mL g^-1 VS, reaching up to 83% and 75% of TS 5% biomethane, respectively. Kinetics results disclosed that the biodegradable organics could be utilized at increasing solid content with decreasing hydrolysis rate. The abundances of hydrogenotrophic and methylotrophic methanogens increased significantly with increasing solid content. This study is of great importance for understanding and application of high solid anaerobic digestion of cow manure.

Shift in methanogenic community in protein degradation using different inocula

Anaerobic digestion (AD) of protein-rich wastes is problematic due to production of ammonia and hydrogen sulfide. In this work, eight inocula were used in batch AD of solutions of gelatin and gluten at 3 g COD substrate/1g VSS inoculum. AD plants from which inocula originated were treating food waste or food wastewater, wastewater sludge, or a combination of them. Inocula were evaluated by fitting methane production data using the modified Gompertz model. Sequencing of 16 s rRNA of microorganisms showed that Methanoculleus was dominant in inocula from plants that were treating food waste, and Methanosaeta was dominant in the others. The maximum methane production rate varied by a factor of three for each substrate: 2.734-7.438 mLCH₄ gCOD^-1 d^-1 for gelatin, and 1.950 to 5.532 mLCH₄ gCOD^-1 d^-1 for gluten. This study demonstrates that inoculum must be chosen appropriately when treating proteinaceous waste by AD.

Microbial mechanism of enhancing methane production from anaerobic digestion of food waste via phase separation and pH control

Phase separation and pH control are commonly used to improve methane production during anaerobic digestion (AD) of food waste, but their influencing mechanisms have not been fully discovered through microbial analysis. In this study, single-phase AD (SPAD), two-phase AD without pH control (TPAD-pHUC), and TPAD with fermentation pH controlled at 6.0 and 4.5 were conducted. The results showed that phase separation decreased the ratio of total bacteria to total archaea in the methanogenic phase. At the organic loading rate (OLR) of 1.9 g/(L·d), methanogenesis was dominated by acetoclastic Methanosaeta in both SPAD and TPAD-pHUC, while elevated Methanoculleus and active hydrogen production initiated a shift from the acetoclastic to hydrogenotrophic pathway in SPAD as OLR increased, eventually resulting in excessive acidification at OLR 3.2 g/(L·d). TPAD-pHUC was dominated by Methanosaeta with scarce hydrogen production genes, and thus maintained a delicate balance between fewer acidogens and methanogens at OLR 3.2-3.7 g/(L·d). TPAD with pH control exhibited higher methane yield (460-482 ml/g) at OLR 1.9 g/(L·d) due to the enhancement of protein degradation and the conversion from methylated compounds to methane by Methanosarcina. High Na⁺ concentration facilitated the proliferation of hydrogen production bacteria, but inhibited acetoclastic methanogenesis at OLR 2.4 g/(L·d). In comparison with SPAD and pH control, TPAD without pH control, integrating 4 d acidogenesis and 22 d methanogenesis, exhibited the best and steady performance at OLR 3.7 g/(L·d) with methane production exceeding 370 ml/g.

Performance and microbial community structure of a full-scale ANITATMMox bioreactor for treating reject water located in Finland

The aim of this work was to study the operational performance and the microbial community dynamics during the start-up of ANITA^TMMox technology implemented at full-scale wastewater treatment plant in Finland to treat reject water from anaerobic digesters. The average ammonium removal in the studied setup reached around 90%, withstanding ammonium loads up to 0.13 g N m^-2h^-1. The nitrite concentration in the effluent did not exceed 10 mg L^-1, and there was a slight accumulation of NO₃^--N during the operation which was controlled. Thus, the result showed a robust success to high ammonium loading in presence of organic matter. The sequencing showed a heterogeneous microbial population where Methanosaeta, WCHA1-57 genus, Sphingobacteriia, Chlorobia and diverse unknown fungi were found as dominant phylotypes. Moreover, members of the Brocadiaceae family were dominant in the adhered biomass, mostly represented by Candidatus Scalindua, rarely reported in WWTPs. Overall, the results demonstrated a drastic effect of region-specific operational conditions on carrier biofilm microbial communities as it was demonstrated by the microbial studies.

Microbial community composition and metabolic functions in landfill leachate from different landfills of China

Landfill leachate usually harbors complex microbial communities responsible for the decomposition of municipal solid waste. However, the diversity and metabolic functions of the microbial communities in landfill leachate as well as the factors that influence them are still not well understood. In this study, Illumina MiSeq high-throughput sequencing was used to investigate the microbial community composition and metabolic functions in landfill leachate from 11 cities in China. The microbial diversity and structure of different leachate samples exhibited obvious differences. In general, Bacteroidetes, Firmicutes and Proteobacteria were the three dominant microbial communities among the 26 bacterial phyla identified in landfill leachate, regardless of the geographical locations. Diverse bacterial genera associated with various functions such as cellulolytic bacteria (e.g., Sphaerochaeta and Defluviitoga), acidifying bacteria (e.g., Prevotella and Trichococcus) and sulfate-reducing bacteria (e.g., Desulfuromonas and Desulfobacterium) were detected abundantly in the landfill leachate. Moreover, the archaeal community in all leachate samples was dominated by the orders Methanomicrobiales and Methanosarcinales belonging to the Euryarchaeota phylum. Notably, the archaea-specific primer pair covered more diverse archaeal communities than the universal bacteria-archaea primer pair. Seventeen archaeal genera belonging to acetoclastic, hydrogenotrophic, and methylotrophic methanogens were identified, and the composition of the dominant genera in these samples varied greatly. The canonical correlation analysis indicated that landfill age, electrical conductivity, ammonia nitrogen, and total nitrogen were significantly correlated with the microbial community structure. Based on PICRUSt2, a total of 41 metabolic pathways belonging to six metabolic pathway groups were predicted, and the KEGG pathway Metabolism was the most abundant group across all leachate samples. This study provides an important insight into the composition and functional characteristics of the microbial communities in landfill leachate.

Relating bacterial dynamics and functions to gaseous emissions during composting of kitchen and garden wastes

This study aims to relate bacterial dynamics to gaseous emissions during the composting of kitchen and garden wastes. High-throughput sequencing and Functional Annotation of Prokaryotic Taxa (FAPROTAX) were used to analyse the bacterial community and potential functions during composting, respectively. Results show that the addition of garden waste up to 15% of the total wet weight of composting materials notably mitigated gaseous emissions and improved maturity during kitchen waste composting. Ammonium nitrogen, temperature, oxygen content, and electrical conductivity were identified as critical factors to impact gaseous emissions. The bacterial community analysis indicated that the proliferation of anaerobes during the storage of kitchen waste induced the dramatic emission of methane (CH₄) and nitrous oxide (N₂O) at the beginning of composting. Adding garden waste could effectively amend the physiochemical properties of composting materials to reduce the relative abundance of microbes (e.g. Desulfotomaculum and Caldicoprobacter) that contributed to gaseous emissions, but enrich those (e.g. Bacillus and Pseudoxanthomonas) for organic biodegradation. Further analysis by FAPROTAX corroborated that adding garden waste could effectively inhibit relevant microbial metabolisms (e.g. fermentation, nitrite/nitrate respiration and sulphate respiration) and thus alleviate the emission of greenhouse gases and odours during kitchen waste composting.

Horizontal gene transfer is a key determinant of antibiotic resistance genes profiles during chicken manure composting with the addition of biochar and zeolite

Livestock manure is an important reservoir of antibiotic resistance genes (ARGs). Biochar and zeolite are commonly used to improve the quality of compost, however, little is known about the impacts of these additives on the fate of ARGs during composting and the underlying mechanisms involved. In this study, zeolite (ZL), biochar (BC), or zeolite and biochar (ZB) simultaneously were added to chicken manure compost to evaluate their effects on the ARGs patterns. After composting, the abundance of ARGs reduced by 92.6% in control, while the reductions were 95.9%, 98.7% and 98.2% for ZL, BC, ZB, respectively. Co-occurrence network analysis indicated that the potential hosts for most ARGs were predominantly affiliated to Firmicutes such as Lactobacillus and Fastidiosipila. Furthermore, shifts in ARGs were significantly correlated with class 1 integrase gene (intI1), and structural equation models further revealed that intI1 gene contributed most (standardized total effect 0.92) to the ARGs-removal, which was trigged by horizontal gene transfer. Together these results suggest that the addition of zeolite and biochar mitigate the accumulation and spread of ARGs during composting, and the crucial role of horizontal gene transfer (HGT) on the behaviors of ARGs should pay more attention to in the future.