Functional keystone drive nitrogen conversion during different animal manures composting

Innovative insights into organic nitrogen degradation through protein family domains analysis in chicken and pig manure composting using metagenomic sequencing

The nitrogen loss in composting is primarily driven by the transformation of organic nitrogen, yet the mechanisms underlying the degradation process remain incompletely understood. This study employed protein family domains (Pfams) analysis based on metagenomic sequencing to investigate the functional characteristics, key microorganisms, and environmental parameters influencing organic nitrogen degradation in chicken manure and pig manure composting. 154 Pfams associated with ammonification function were identified. Predominant Pfams: proteolytic peptidase, followed by chitin/cell wall degraders, least involved in nucleic acid degradation. Ammonifying microbial diversity was basically consistent among compost types, particularly in the thermophilic stage with the peak of abundance of dominant ammonifying microorganisms. Viruses played an important role in ammonification process, especially Uroviricota. 26 key ammonifying genera were identified by the microbial network. pH dominated the metabolic activity of ammonifying microorganisms in various manure compost types, primarily consisting of protein-degrading bacteria with stable community structures.

Insight into N2O emission and denitrifier communities under different aeration intensities in composting of cattle manure from perspective of multi-factor interaction analysis

Nitrous oxide (N2O) emission from composting is a significant contributor to greenhouse effect and ozone depletion, which poses a threat to environment. To address the challenge of mitigating N2O emission during composting, this study investigated the response of N2O emission and denitrifier communities (detected by metagenome sequencing) to aeration intensities of 6 L/min (C6), 12 L/min (C12), and 18 L/min (C18) in cattle manure composting using multi-factor interaction analysis. Results showed that N2O emission occurred mainly at mesophilic phase. Cumulative N2O emission (QN2O, 9.79 mg·kg-1 DW) and total nitrogen loss (TN loss, 16.40 %) in C12 composting treatment were significantly lower than those in the other two treatments. The lower activity of denitrifying enzymes and the more complex and balanced network of denitrifiers and environmental factors might be responsible for the lower N2O emission. Denitrification was confirmed to be the major pathway for N2O production. Moisture content (MC) and Luteimonas were the key factors affecting N2O emission, and nosZ-carrying denitrifier played a significant role in reducing N2O emission. Although relative abundance of nirS was lower than that of nirK significantly (P < 0.05), nirS was the key gene influencing N2O emission. Community composition of denitrifier varied significantly with different aeration treatments (R2 = 0.931, P = 0.001), and Achromobacter was unique to C12 at mesophilic phase. Physicochemical factors had higher effect on QN2O, whereas denitrifying genes, enzymes and NOX- had lower effect on QN2O in C12. The complex relationship between N2O emission and the related factors could be explained by multi-factor interaction analysis more comprehensively. This study provided a novel understanding of mechanism of N2O emission regulated by aeration intensity in composting.

Investigating fungal community characteristics in co-composted cotton stalk and various livestock manure products

Agricultural wastes, comprising cotton straw and livestock manure, can be effectively managed through aerobic co-composting. Nevertheless, the quality and microbial characteristics of co-composting products from different sources remain unclear. Therefore, this study utilized livestock manure from various sources in Xinjiang, China, including herbivorous sheep manure (G), omnivorous pigeon manure (Y), and pigeon-sheep mixture (GY) alongside cotton stalks, for a 40-day co-composting process. We monitored physicochemical changes, assessed compost characteristics, and investigated fungal community. The results indicate that all three composts met established composting criteria, with compost G exhibiting the fastest microbial growth and achieving the highest quality. Ascomycota emerged as the predominant taxon in three compost products. Remarkably, at the genus level, the biomarker species for G, Y, and GY are Petromyces and Cordyceps, Neurospora, and Neosartorya, respectively. Microorganisms play a pivotal role in organic matter degradation, impacting nutrient composition, demonstrating significant potential for the decomposition and transformation of compost components. Redundancy analysis indicates that potassium, total organic carbon, and C:N are key factors influencing fungal communities. This study elucidates organic matter degradation in co-composting straw and livestock manure diverse sources, optimizing treatment for efficient agricultural waste utilization and sustainable practices.

Functional keystone taxa promote N and P removal of the constructed wetland to mitigate agricultural nonpoint source pollution

Characterized by irregular spatial and temporal variations of pollutant loading and complex occurrence mechanisms, agricultural nonpoint source pollution (ANPSP) has always been a great challenge in field restoration worldwide. Returning farmlands to wetlands (RFWs) as an ecological restoration mode among various constructed wetlands was selected to manage ANPSP in this study. Triarrhena lutarioriparia, Nelumbo nucifera and Zizania latifolia monocultures were designed and the water pollutants was monitored. N. nucifera and Z. latifolia could reach the highest TN (53.28 %) and TP (53.22 %) removal efficiency, respectively. By 16s high-throughput sequencing of rhizosphere bacteria, 45 functional species were the main contributors for efficient N and P removal, and 38 functional keystone taxa (FKT) were found with significant ecological niche roles and metabolic functions. To our knowledge, this is the first study to explore the microbial driving N and P removal mechanism in response to ANPSP treated by field scale RFWs.

Functional redundancy is the key mechanism used by microorganisms for nitrogen and sulfur metabolism during manure composting

The microbial ecological functions associated with the nitrogen and sulfur cycles during composting have not been thoroughly elucidated. Using metagenomic sequencing, the microbial mechanisms underlying the nitrogen and sulfur metabolism during livestock and poultry manure composting were investigated in this study. The findings demonstrate that functional redundancy among microorganisms is a crucial factor for the nitrogen and sulfur cycling during livestock and poultry manure composting. Processes such as organic sulfur synthesis, assimilatory sulfate reduction, ammonia assimilation, and denitrification were found to be prevalent. Additionally, there was a certain degree of conservation in nitrogen and sulfur conversion functions among microorganisms at the phylum level. All high-quality metagenomic assembly genomes (MAGs) possessed carbon fixation potential, with 86.3 % of MAGs containing both nitrogen and sulfur conversion genes. Except for bin30, other MAGs encoding sulfur oxidation enzymes were found to be associated with at least one denitrification gene. This suggests a potential interplay between nitrogen and sulfur metabolism among microorganisms. 45, 19, 1, 31, 1, and 2 MAGs could completely regulate organic sulfur synthesis, assimilatory sulfate reduction, thiosulfate oxidation to sulfate, glutamine synthase-glutamate synthase pathway (GS-GOGAT), denitrification, and dissimilatory nitrate reduction, respectively by encoding the required enzymes. TN and pH were the key factors driving the functional redundancy in nitrogen and sulfur microbial community.

Effects of biochar combined with MgO desulfurization waste residue on nitrogen conversion and odor emission in chicken manure composting

Aim: Chicken manure is known to produce strong odors during aerobic composting, which not only pollutes the surrounding environment but also leads to the loss of valuable nutrients like nitrogen and sulfur, thus reducing the quality of the fertilizer. Methods: In this study, we explored the use of biochar combined with MgO desulfurization waste residue (MDWR) as a novel composting additive. Our approach involved conducting composting tests, characterizing the compost samples, conducting pot experiments, and examining the impact of the additives on nitrogen retention, deodorization, and compost quality. Results: Our findings revealed that the addition of biochar and MDWR significantly reduced ammonia volatilization in chicken manure compost, demonstrating a reduction rate of up to 60.12%. Additionally, the emission of volatile organic compounds (VOCs) from chicken manure compost treated with biochar and MDWR decreased by 44.63% compared to the control group. Conclusions: The composting product treated with both biochar and MDWR (CMB) exhibited a 67.7% increase in total nitrogen (TN) compared to the blank control group, surpassing the other treatment groups and showcasing the synergistic effect of these two additives on nitrogen retention. Moreover, the CMB treatment facilitated the formation of struvite crystals. Furthermore, our pot experiment results demonstrated that the CMB treatment enhanced vegetable yield and quality while reducing nitrate content. These findings highlight the significant impact of MDWR on nitrogen retention, deodorization, and compost quality enhancement, thereby indicating its promising application prospects.

Feedstock optimization with rice husk chicken manure and mature compost during chicken manure composting: Quality and gaseous emissions

This study investigated the impact of mature compost input on compost quality, greenhouse gases (GHGs, i.e. methane and nitrous oxide) and ammonia emissions during chicken manure and rice husk chicken manure co-composting. The experiment used different volumes of mature compost: 10% (T1), 20% (T2), and 30% (T3) to replace rice husk chicken manure. Results showed that mature compost enhanced compost maturity by promoting the activities of Bacillus, Caldicoprobacter, Thermobifida, Pseudogracilibacillus, Brachybacterium, and Sinibacillus. Compared to CK, T1, T2, and T3 reduced NH3 emission by 32.07%, 33.64%, and 56.12%, and mitigated 14.97%, 16.57%, and 26.18% of total nitrogen loss, respectively. Additionally, T2 and T3 reduced CH4 emission by 40.98% and 62.24%, respectively. The N2O emissions were positive correlation with Lactobacillus, Pseudogracilibacillus and ammonium nitrogen (p < 0.05), while T2 reducing total greenhouse effects. Therefore, replacing rice husk chicken manure with 20% mature compost is an efficient and promising approach for composting.

Microbial Community Response to Various Types of Exogenous Organic Matter Applied to Soil

Recycling of solid biowaste and manure would reduce the dependence of agriculture on synthetic products. Most of the available studies on the effects of exogenous organic matter (EOM) application to soil were focused on nutrients and crop yield, with much less attention to microbiological processes in soil, especially using modern molecular methods. The aim of this study was to evaluate the effects of various types of manure, sewage sludge and bottom sediment on the biochemical activity and biodiversity of soil and plant yield in a pot experiment. The soil was treated with a range of EOM types: six types of manure (cattle, pig, goat, poultry, rabbit and horse manure; two bottom sediments (from urban and rural systems); and two types of municipal sewage sludge. All EOMs stimulated dehydrogenases activity at a rate of 20 t ha-1. Alkaline phosphatase was mostly stimulated by poultry manure and one of the sludges. In general, the two-fold greater rate of EOMs did not further accelerate the soil enzymes. The functional diversity of the soil microbiome was stimulated the most by cattle and goat manure. EOMs produce a shift in distribution of the most abundant bacterial phyla and additionally introduce exogenous bacterial genera to soil. Poultry and horse manure introduced the greatest number of new genera that were able to survive the strong competition in soil. EOMs differentiated plant growth in our study, which was correlated to the rate of nitrate release to soil. The detailed impacts of particular amendments were EOM-specific, but in general, no harm for microbial parameters was observed for manure and sludge application, regardless of their type. There was also no proof that the PAH and pesticide contents measured in manure or sludge had any effect on microbial activity and diversity.

Bacterial community dynamics and co-occurrence network patterns during different stages of biochar-driven composting

Bacterial communities were dynamically tracked at four stages of biochar-driven sheep manure pile composting, and the co-occurrence networks with keystone taxa were established. The succession of bacterial community obvious varied during the composting process, Proteobacteria predominant in initial stage (39%) then shifted into Firmicutes in thermophilic (41%) and mesophilic (27%) stages, finally the maturation stage dominant by Bacteroidota (26%). Visualizations of bacterial co-occurrence networks demonstrate more cooperative mutualism and complex interactions in the thermophilic and mesophilic phases. Noticeably, the 7.5 and 10% biochar amended composts shown highest connections (736 and 663 total links) and positive cooperation (97.37 and 97.13% positive link) as well as higher closeness centrality and betweenness centrality of keystone taxa. Overall, appropriate biochar addition alters bacterial community succession and strengthens connection between keystone taxa and other bacteria, with 7.5 and 10% biochar amended composts has intense mutualistic symbiosis among bacterial communities.

Measures for Controlling Gaseous Emissions during Composting: A Review

Composting is a promising technology for treating organic solid waste. However, greenhouse gases (methane and nitrous oxide) and odor emissions (ammonia, hydrogen sulfide, etc.) during composting are practically unavoidable, leading to severe environmental problems and poor final compost products. The optimization of composting conditions and the application of additives have been considered to mitigate these problems, but a comprehensive analysis of the influence of these methods on gaseous emissions during composting is lacking. Thus, this review summarizes the influence of composting conditions and different additives on gaseous emissions, and the cost of each measure is approximately evaluated. Aerobic conditions can be achieved by appropriate process conditions, so the contents of CH4 and N2O can subsequently be effectively reduced. Physical additives are effective regulators to control anaerobic gaseous emissions, having a large specific surface area and great adsorption performance. Chemical additives significantly reduce gaseous emissions, but their side effects on compost application must be eliminated. The auxiliary effect of microbial agents is not absolute, but is closely related to the dosage and environmental conditions of compost. Compound additives can reduce gaseous emissions more efficiently than single additives. However, further study is required to assess the economic viability of additives to promote their large-scale utilization during composting.