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Li X, Wang H, Qi X, Ji Y, Li F, Chen X, Li K, Li L. PCR Independent Strategy-Based Biosensors for RNA Detection. BIOSENSORS 2024; 14:200. [PMID: 38667193 PMCID: PMC11048163 DOI: 10.3390/bios14040200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/11/2024] [Accepted: 04/15/2024] [Indexed: 04/28/2024]
Abstract
RNA is an important information and functional molecule. It can respond to the regulation of life processes and is also a key molecule in gene expression and regulation. Therefore, RNA detection technology has been widely used in many fields, especially in disease diagnosis, medical research, genetic engineering and other fields. However, the current RT-qPCR for RNA detection is complex, costly and requires the support of professional technicians, resulting in it not having great potential for rapid application in the field. PCR-free techniques are the most attractive alternative. They are a low-cost, simple operation method and do not require the support of large instruments, providing a new concept for the development of new RNA detection methods. This article reviews current PCR-free methods, overviews reported RNA biosensors based on electrochemistry, SPR, microfluidics, nanomaterials and CRISPR, and discusses their challenges and future research prospects in RNA detection.
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Affiliation(s)
- Xinran Li
- Institute of Quality Standard and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (X.Q.); (F.L.)
| | - Haoqian Wang
- Development Center of Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing 100176, China;
| | - Xin Qi
- Institute of Quality Standard and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (X.Q.); (F.L.)
| | - Yi Ji
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China;
| | - Fukai Li
- Institute of Quality Standard and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (X.Q.); (F.L.)
| | - Xiaoyun Chen
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China;
| | - Kai Li
- Institute of Quality Standard and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (X.Q.); (F.L.)
| | - Liang Li
- Institute of Quality Standard and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (X.L.); (X.Q.); (F.L.)
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2
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Ci Q, He Y, Chen J. Novel Anti-CRISPR-Assisted CRISPR Biosensor for Exclusive Detection of Single-Stranded DNA (ssDNA). ACS Sens 2024; 9:1162-1167. [PMID: 38442486 PMCID: PMC10964243 DOI: 10.1021/acssensors.4c00201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 02/26/2024] [Accepted: 03/01/2024] [Indexed: 03/07/2024]
Abstract
Nucleic acid analysis plays an important role in disease diagnosis and treatment. The discovery of CRISPR technology has provided novel and versatile approaches to the detection of nucleic acids. However, the most widely used CRISPR-Cas12a detection platforms lack the capability to distinguish single-stranded DNA (ssDNA) from double-stranded DNA (dsDNA). To overcome this limitation, we first employed an anti-CRISPR protein (AcrVA1) to develop a novel CRISPR biosensor to detect ssDNA exclusively. In this sensing strategy, AcrVA1 cut CRISPR guide RNA (crRNA) to inhibit the cleavage activity of the CRISPR-Cas12a system. Only ssDNA has the ability to recruit the cleaved crRNA fragment to recover the detection ability of the CRISPR-Cas12 biosensor, but dsDNA cannot accomplish this. By measuring the recovered cleavage activity of the CRISPR-Cas12a biosensor, our developed AcrVA1-assisted CRISPR biosensor is capable of distinguishing ssDNA from dsDNA, providing a simple and reliable method for the detection of ssDNA. Furthermore, we demonstrated our developed AcrVA1-assisted CRISPR biosensor to monitor the enzymatic activity of helicase and screen its inhibitors.
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Affiliation(s)
- Qiaoqiao Ci
- Department
of Biological Systems Engineering, Virginia
Tech, Blacksburg, Virginia 24061, United States
| | - Yawen He
- Department
of Biological Systems Engineering, Virginia
Tech, Blacksburg, Virginia 24061, United States
| | - Juhong Chen
- Department
of Biological Systems Engineering, Virginia
Tech, Blacksburg, Virginia 24061, United States
- Department
of Bioengineering, University of California,
Riverside, Riverside, California 92521, United States
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3
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Grabarczyk M, Fialek M, Wlazlowska E. Multiwall Carbon Nanotubes/Spherical Glassy Carbon as Environmentally Friendly Adsorption Materials Utilized in Adsorptive Stripping Voltammetry for the Determination of Trace Amounts of Ga(III). MATERIALS (BASEL, SWITZERLAND) 2024; 17:966. [PMID: 38399216 PMCID: PMC10890208 DOI: 10.3390/ma17040966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Revised: 02/16/2024] [Accepted: 02/18/2024] [Indexed: 02/25/2024]
Abstract
This work presents a proposal for an adsorptive stripping voltammetric (AdSV) method for gallium(III) determination at an eco-friendly multiwall carbon nanotube/spherical glassy carbon (MWCNT/SGC) electrode modified with a lead film. The operational factors influencing the sensitivity of the AdSV procedure were thoroughly investigated, and their most favorable values were chosen (0.1 mol L-1 acetate buffer solution pH = 5.6; 7 × 10-5 mol L-1 Pb(II); 2 × 10-4 mol L-1 cupferron; potential/time of lead film formation: -1.9 V/30 s; potential/time of Ga(III)-cupferron adsorption: -0.75 V/30 s). The newly developed MWCNT/SGCE has proven to be a competitive substrate to the glassy carbon electrode to create a lead film electrode, since it allows the determination of gallium in a wider range of concentrations from 3 × 10-9 to 4 × 10-7 mol L-1 with a lower limit of detection equal to 9.5 × 10-10 mol L-1. The elaborated procedure has been shown to be highly selective and insensitive to the presence of an even 100-fold excess of most of the ions commonly found in environmental waters. The MWCNT/SGC sensor, which can maintain >95% of its original response after 70 days of use, has been successfully applied for the detection of gallium in water samples with the relative standard deviation (RSD) ranging from 4.5% to 6.2% (n = 3) and recoveries in the range from 95.3% to 104.9%.
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Affiliation(s)
| | - Marzena Fialek
- Department of Analytical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Sklodowska University, 20-031 Lublin, Poland; (M.G.); (E.W.)
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4
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Direct Electrochemistry & Enzyme Characterization of Fresh Tobacco RNA. J Electroanal Chem (Lausanne) 2023. [DOI: 10.1016/j.jelechem.2023.117156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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5
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Fortunati S, Vasini I, Giannetto M, Mattarozzi M, Porchetta A, Bertucci A, Careri M. Controlling Dynamic DNA Reactions at the Surface of Single-Walled Carbon Nanotube Electrodes to Design Hybridization Platforms with a Specific Amperometric Readout. Anal Chem 2022; 94:5075-5083. [PMID: 35303407 PMCID: PMC8968946 DOI: 10.1021/acs.analchem.1c05294] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
![]()
Carbon nanotube (CNT)-based
electrodes are cheap, highly performing,
and robust platforms for the fabrication of electrochemical sensors.
Engineering programmable DNA nanotechnologies on the CNT surface can
support the construction of new electrochemical DNA sensors providing
an amperometric output in response to biomolecular recognition. This
is a significant challenge, since it requires gaining control of specific
hybridization processes and functional DNA systems at the interface,
while limiting DNA physisorption on the electrode surface, which contributes
to nonspecific signal. In this study, we provide design rules to program
dynamic DNA structures at the surface of single-walled carbon nanotubes
electrodes, showing that specific DNA interactions can be monitored
through measurement of the current signal provided by redox-tagged
DNA strands. We propose the use of pyrene as a backfilling agent to
reduce nonspecific adsorption of reporter DNA strands and demonstrate
the controlled formation of DNA duplexes on the electrode surface,
which we then apply in the design and conduction of programmable DNA
strand displacement reactions. Expanding on this aspect, we report
the development of novel amperometric hybridization platforms based
on artificial DNA structures templated by the small molecule melamine.
These platforms enable dynamic strand exchange reactions orthogonal
to conventional toehold-mediated strand displacement and may support
new strategies in electrochemical sensing of biomolecular targets,
combining the physicochemical properties of nanostructured carbon-based
materials with programmable nucleic acid hybridization.
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Affiliation(s)
- Simone Fortunati
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
| | - Ilaria Vasini
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
| | - Marco Giannetto
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
| | - Monica Mattarozzi
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
| | - Alessandro Porchetta
- Department of Chemical Sciences, University of Rome Tor Vergata, 00133 Rome, Italy
| | - Alessandro Bertucci
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
| | - Maria Careri
- Department of Chemistry, Life Sciences, and Environmental Sustainability, University of Parma, 43124 Parma, Italy
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6
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Label-free electrochemical analysis of purine nucleotides and nucleobases at disposable carbon electrodes in microliter volumes. J Electroanal Chem (Lausanne) 2019. [DOI: 10.1016/j.jelechem.2019.113252] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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7
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Yoosefian M, Etminan N. Leucine/Pd-loaded (5,5) single-walled carbon nanotube matrix as a novel nanobiosensors for in silico detection of protein. Amino Acids 2018. [PMID: 29536267 DOI: 10.1007/s00726-018-2552-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We have designed a novel nanobiosensor for in silico detecting proteins based on leucine/Pd-loaded single-walled carbon nanotube matrix. Density functional theory at the B3LYP/6-31G (d) level of theory was realized to analyze the geometrical and electronic structure of the proposed nanobiosensor. The solvent effects were investigated using the Tomasi's polarized continuum model. Atoms-in-molecules theory was used to study the nature of interactions by calculating the electron density ρ(r) and Laplacian at the bond critical points. Natural bond orbital analysis was performed to achieve a deep understanding of the nature of the interactions. The biosensor has potential application for high sensitive and rapid response to protein due to the chemical adsorption of L-leucine amino acid onto Pd-loaded single-walled carbon nanotube and reactive functional groups that can incorporate in hydrogen binding, hydrophobic interactions and van der Waals forces with the protein surface in detection process.
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Affiliation(s)
- Mehdi Yoosefian
- Department of Nanotechnology, Graduate University of Advanced Technology, Kerman, Iran.
| | - Nazanin Etminan
- Chemistry Department, University of Payam-noor, 19395-4697, Tehran, Iran
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8
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Lu Z, Tang H, Wu D, Xia Y, Wu M, Yi X, Li H, Wang J. Amplified voltammetric detection of miRNA from serum samples of glioma patients via combination of conducting magnetic microbeads and ferrocene-capped gold nanoparticle/streptavidin conjugates. Biosens Bioelectron 2016; 86:502-507. [DOI: 10.1016/j.bios.2016.07.010] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 06/27/2016] [Accepted: 07/05/2016] [Indexed: 02/07/2023]
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9
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Fujita H, Kataoka Y, Tobita S, Kuwahara M, Sugimoto N. Novel One-Tube-One-Step Real-Time Methodology for Rapid Transcriptomic Biomarker Detection: Signal Amplification by Ternary Initiation Complexes. Anal Chem 2016; 88:7137-44. [PMID: 27347743 DOI: 10.1021/acs.analchem.6b01192] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
We have developed a novel RNA detection method, termed signal amplification by ternary initiation complexes (SATIC), in which an analyte sample is simply mixed with the relevant reagents and allowed to stand for a short time under isothermal conditions (37 °C). The advantage of the technique is that there is no requirement for (i) heat annealing, (ii) thermal cycling during the reaction, (iii) a reverse transcription step, or (iv) enzymatic or mechanical fragmentation of the target RNA. SATIC involves the formation of a ternary initiation complex between the target RNA, a circular DNA template, and a DNA primer, followed by rolling circle amplification (RCA) to generate multiple copies of G-quadruplex (G4) on a long DNA strand like beads on a string. The G4s can be specifically fluorescence-stained with N(3)-hydroxyethyl thioflavin T (ThT-HE), which emits weakly with single- and double-stranded RNA/DNA but strongly with parallel G4s. An improved dual SATIC system, which involves the formation of two different ternary initiation complexes in the RCA process, exhibited a wide quantitative detection range of 1-5000 pM. Furthermore, this enabled visual observation-based RNA detection, which is more rapid and convenient than conventional isothermal methods, such as reverse transcription-loop-mediated isothermal amplification, signal mediated amplification of RNA technology, and RNA-primed rolling circle amplification. Thus, SATIC methodology may serve as an on-site and real-time measurement technique for transcriptomic biomarkers for various diseases.
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Affiliation(s)
- Hiroto Fujita
- Graduate School of Science and Technology, Gunma University , 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan
| | - Yuka Kataoka
- Graduate School of Science and Technology, Gunma University , 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan
| | - Seiji Tobita
- Graduate School of Science and Technology, Gunma University , 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan
| | - Masayasu Kuwahara
- Graduate School of Science and Technology, Gunma University , 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan
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10
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Mazaheri S, Ghoreishi SM, Motaghedifard M. The method development for analysis of MoO3 in Urtica dioica (Nettle) by adsorptive stripping voltammetry in anodic area in the presence of Calcon as liquid complexing agent. J Mol Liq 2016. [DOI: 10.1016/j.molliq.2016.04.051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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11
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Removal of Uranium and Associated Contaminants from Aqueous Solutions Using Functional Carbon Nanotubes-Sodium Alginate Conjugates. MINERALS 2016. [DOI: 10.3390/min6010009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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12
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Nur Topkaya S, Ozkan-Ariksoysal D. Prostate Cancer Biomarker Detection with Carbon Nanotubes Modified Screen Printed Electrodes. ELECTROANAL 2015. [DOI: 10.1002/elan.201501003] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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13
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Shervedani RK, Dehaghi SB, Foroushani MS. Construction of 5-amino-1,10-phenanthroline-Fe(II) Nanostructures on Glassy Carbon Electrode: Simultaneous and Selective Determination of Purine and Pyrimidine DNA Bases. ELECTROANAL 2015. [DOI: 10.1002/elan.201500580] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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14
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Zhao L, Cao D, Gao Z, Mi B, Huang W. Label-Free DNA Sensors Based on Field-Effect Transistors with Semiconductor of Carbon Materials. CHINESE J CHEM 2015. [DOI: 10.1002/cjoc.201500254] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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15
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Zhu X, Li J, He H, Huang M, Zhang X, Wang S. Application of nanomaterials in the bioanalytical detection of disease-related genes. Biosens Bioelectron 2015; 74:113-33. [PMID: 26134290 DOI: 10.1016/j.bios.2015.04.069] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 04/09/2015] [Accepted: 04/21/2015] [Indexed: 12/15/2022]
Abstract
In the diagnosis of genetic diseases and disorders, nanomaterials-based gene detection systems have significant advantages over conventional diagnostic systems in terms of simplicity, sensitivity, specificity, and portability. In this review, we describe the application of nanomaterials for disease-related genes detection in different methods excluding PCR-related method, such as colorimetry, fluorescence-based methods, electrochemistry, microarray methods, surface-enhanced Raman spectroscopy (SERS), quartz crystal microbalance (QCM) methods, and dynamic light scattering (DLS). The most commonly used nanomaterials are gold, silver, carbon and semiconducting nanoparticles. Various nanomaterials-based gene detection methods are introduced, their respective advantages are discussed, and selected examples are provided to illustrate the properties of these nanomaterials and their emerging applications for the detection of specific nucleic acid sequences.
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Affiliation(s)
- Xiaoqian Zhu
- Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China
| | - Jiao Li
- Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China
| | - Hanping He
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules, College of Chemistry and Chemical Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China; Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China.
| | - Min Huang
- Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China
| | - Xiuhua Zhang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules, College of Chemistry and Chemical Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China; Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China
| | - Shengfu Wang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules, College of Chemistry and Chemical Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China; Ministry-of-Education Key Laboratory for the Green Preparation and Application of Functional Materials, College of Materials Science and Engineering, Hubei University, Youyi Road 368, Wuchang, Wuhan, Hubei 430062, PR China
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16
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Wang Z, Dai Z. Carbon nanomaterial-based electrochemical biosensors: an overview. NANOSCALE 2015; 7:6420-31. [PMID: 25805626 DOI: 10.1039/c5nr00585j] [Citation(s) in RCA: 199] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Carbon materials on the nanoscale exhibit diverse outstanding properties, rendering them extremely suitable for the fabrication of electrochemical biosensors. Over the past two decades, advances in this area have continuously emerged. In this review, we attempt to survey the recent developments of electrochemical biosensors based on six types of carbon nanomaterials (CNs), i.e., graphene, carbon nanotubes, carbon dots, carbon nanofibers, nanodiamonds and buckminsterfullerene. For each material, representative samples are introduced to expound the different roles of the CNs in electrochemical bioanalytical strategies. In addition, remaining challenges and perspectives for future developments are also briefly discussed.
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Affiliation(s)
- Zhaoyin Wang
- Jiangsu Collaborative Innovation Center of Biomedical Functional Materials and Jiangsu Key Laboratory of Biofunctional Materials, College of Chemistry and Materials Science, Nanjing Normal University, Nanjing, 210023, P. R. China.
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17
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Sharma VK, Jelen F, Trnkova L. Functionalized solid electrodes for electrochemical biosensing of purine nucleobases and their analogues: a review. SENSORS (BASEL, SWITZERLAND) 2015; 15:1564-600. [PMID: 25594595 PMCID: PMC4327092 DOI: 10.3390/s150101564] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 01/04/2015] [Indexed: 12/14/2022]
Abstract
Interest in electrochemical analysis of purine nucleobases and few other important purine derivatives has been growing rapidly. Over the period of the past decade, the design of electrochemical biosensors has been focused on achieving high sensitivity and efficiency. The range of existing electrochemical methods with carbon electrode displays the highest rate in the development of biosensors. Moreover, modification of electrode surfaces based on nanomaterials is frequently used due to their extraordinary conductivity and surface to volume ratio. Different strategies for modifying electrode surfaces facilitate electron transport between the electrode surface and biomolecules, including DNA, oligonucleotides and their components. This review aims to summarize recent developments in the electrochemical analysis of purine derivatives, as well as discuss different applications.
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Affiliation(s)
- Vimal Kumar Sharma
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic.
| | - Frantisek Jelen
- Institute of Biophysics of the Academy of Sciences of the Czech Republic, V.V.I., Kralovopolska 135, CZ-612 65 Brno, Czech Republic.
| | - Libuse Trnkova
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czech Republic.
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18
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Synthesis of ionic liquids coated nanocrystalline zeolite materials and their application in the simultaneous determination of adenine, cytosine, guanine, and thymine. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2014.04.019] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Kaur B, Srivastava R. Ionic liquids coated Fe3O4 based inorganic-organic hybrid materials and their application in the simultaneous determination of DNA bases. Colloids Surf B Biointerfaces 2014; 118:179-87. [PMID: 24703634 DOI: 10.1016/j.colsurfb.2014.03.020] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Revised: 02/17/2014] [Accepted: 03/09/2014] [Indexed: 11/17/2022]
Abstract
Ionic liquids (ILs) coated Fe3O4 based inorganic-organic hybrid materials (represented as Fe3O4/ILs) were synthesized. ILs such as methylimidazolium chloride ([Hmim][Cl]) and 1-butyl-3-methylimidazolium chloride ([Bmim][Cl]) were investigated. For comparative study, quaternary ammonium salts such as choline chloride, cetyltrimethylammonium bromide [C16H33N(CH3)3][Br], and trimethylstearylammonium chloride [C18H37N(CH3)3][Cl] were also investigated. Materials were characterized by X-ray diffraction, nitrogen sorption, Fourier transform infrared and scanning/transmission electron microscopy. Electrochemical sensors based on Fe3O4/ILs modified glassy carbon electrodes were fabricated for the simultaneous determination of all four DNA bases. The electrochemical behavior of DNA bases was investigated in detail. Various reaction parameters such as effect of scan rate, number of electrons involved in the rate determining step, electron transfer coefficient, surface adsorbed concentration, and the electrode reaction standard rate constant were investigated. Catalytic activity obtained at various Fe3O4/ILs modified electrodes was explained using DFT calculation. The analytical performance of the sensor was demonstrated in the simultaneous determination of guanine, adenine, thymine, and cytosine in calf thymus DNA sample.
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Affiliation(s)
- Balwinder Kaur
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar 140001, India
| | - Rajendra Srivastava
- Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar 140001, India.
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Mansor NA, Zain ZM, Hamzah HH, Noorden MSA, Jaapar SS, Beni V, Ibupoto ZH. Detection of Breast Cancer 1 (BRCA1) Gene Using an Electrochemical DNA Biosensor Based on Immobilized ZnO Nanowires. ACTA ACUST UNITED AC 2014. [DOI: 10.4236/ojab.2014.32002] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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21
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Anu Prathap M, Srivastava R, Satpati B. Simultaneous detection of guanine, adenine, thymine, and cytosine at polyaniline/MnO2 modified electrode. Electrochim Acta 2013. [DOI: 10.1016/j.electacta.2013.10.064] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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22
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Zhang S, Du B, Li H, Xin X, Ma H, Wu D, Yan L, Wei Q. Metal ions-based immunosensor for simultaneous determination of estradiol and diethylstilbestrol. Biosens Bioelectron 2013; 52:225-31. [PMID: 24055936 DOI: 10.1016/j.bios.2013.08.042] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2013] [Revised: 08/09/2013] [Accepted: 08/20/2013] [Indexed: 10/26/2022]
Abstract
Environmental estrogens (EEs) can cause various endocrine diseases. Herein, we designed an ultrasensitive electrochemical immunosensor for simultaneous detection of two typical EEs, estradiol and diethylstilbestrol. These two analytes were immobilized on graphene sheet (GS) modified glassy carbon electrode (GCE). Amino-group functionalized mesoporous Fe3O4 (Fe3O4-NH2) was loaded with Pb(2+) or Cd(2+), and then incubated with estradiol and diethylstilbestrol antibodies, respectively. Using an electrochemical analysis technique, two well-separated peaks were generated by the redox reaction of Pb(2+) or Cd(2+), making the simultaneous detection of two analytes on the electrode possible. Subsequently, square wave anodic stripping voltammetry (SWASV) and electrochemical impedance spectroscopy (EIS) were used to investigate the electrochemical behaviors of the immunosensor. Under optimized conditions, the SWASV peak currents were proportional to the concentrations of estradiol and diethylstilbestrol in the range from 0.050 pg mL(-1) to 100 ng mL(-1) and 1.0 pg mL(-1) to 100 ng mL(-1), respectively. The immunosensor exhibited highly sensitive response to estradiol with a detection limit of 0.015 pg mL(-1) and diethylstilbestrol with a detection limit of 0.38 pg mL(-1). Furthermore, the immunosensor was satisfactorily employed to detect estradiol and diethylstilbestrol simultaneously in water samples.
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Affiliation(s)
- Sen Zhang
- Key Laboratory of Chemical Sensing & Analysis in Universities of Shandong, School of Chemistry and Chemical Engineering, University of Jinan, Jinan 250022, PR China
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Detection of real sample DNA at a cadmium sulfide--chitosan/gelatin modified electrode. Colloids Surf B Biointerfaces 2013; 113:85-91. [PMID: 24060932 DOI: 10.1016/j.colsurfb.2013.08.028] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 08/18/2013] [Accepted: 08/20/2013] [Indexed: 11/22/2022]
Abstract
Cadmium sulfide (CdS) was combined with chitosan (Chi) and gelatin (Gel) to prepare a CdS-Chi/Gel modified electrode. Chi exhibits a large positive charge density and was to provide a uniform of CdS surface. Gel exhibits high mechanical strength and low toxicity toward mammalian cells, and is non-antigenic biopolymer. CdS-Chi exhibits a lower contact angle than that of bare CdS, indicating that the hydrophilicity of the sample surface had increased. Electrochemical impedance spectroscopy (EIS) was used to determine diffusion coefficients and to characterize the electron transfer kinetics during the redox reactions. The surface morphologies of CdS-Chi and Gel were characterized using scanning electron microscopy (SEM) and atomic force microscopy (AFM). Differential pulse voltammetry (DPV) was used to detect the analytes. DPV not only increased the linear range of the electrocatalytic current, but also lowered the overpotential for oxidation interference in the measurements. The CdS electrode exhibited a enhanced electrocatalytic activity toward the analytes evaluated in this study. The presence of Gel enhanced the loading and stability of the electrode. The fabricated electrode was successfully used for the simultaneous electrochemical oxidation of guanine (G) and adenine (A).
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24
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Ju H. Grand challenges in analytical chemistry: towards more bright eyes for scientific research, social events and human health. Front Chem 2013; 1:5. [PMID: 24790934 PMCID: PMC3982555 DOI: 10.3389/fchem.2013.00005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Accepted: 03/06/2013] [Indexed: 11/13/2022] Open
Affiliation(s)
- Huangxian Ju
- State Key Laboratory of Analytical Chemistry for Life Science, Department of Chemistry, Nanjing UniversityNanjing, PR China
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25
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Li CZ, Karadeniz H, Canavar E, Erdem A. Electrochemical sensing of label free DNA hybridization related to breast cancer 1 gene at disposable sensor platforms modified with single walled carbon nanotubes. Electrochim Acta 2012. [DOI: 10.1016/j.electacta.2012.05.057] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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26
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Voltammetric detection of uridin diphosphate glucuronosyl transferase 1A9 (UGT1A9) gene corresponding oligonucleotide covering promoter region from −268 to −280 including (A/T) polymorphism at position −275 and optimization of the detection factors. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2012. [DOI: 10.1007/s13738-012-0172-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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CHEN SZ, CAI Q, PENG FY, HUANG XX, JIA YL. Screen-Printed Electrochemical Biosensor for Detection of DNA Hybridization. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2012. [DOI: 10.1016/s1872-2040(11)60565-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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28
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A highly sensitive method for determination of guanine, adenine and epinephrine using poly-melamine film modified glassy carbon electrode. J Electroanal Chem (Lausanne) 2012. [DOI: 10.1016/j.jelechem.2012.04.026] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Erdem A, Karadeniz H, Canavar PE, Congur G. Single-Use Sensor Platforms Based on Carbon Nanotubes for Electrochemical Detection of DNA Hybridization Related to Microcystis spp. ELECTROANAL 2011. [DOI: 10.1002/elan.201100369] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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30
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CeO2 nanoparticles decorated multi-walled carbon nanotubes for electrochemical determination of guanine and adenine. Electrochim Acta 2011. [DOI: 10.1016/j.electacta.2011.07.048] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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31
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Deng KQ, Li CX, Ling YL, Xu GR, Li XF. Fabrication of poly (2,6-pyridinedicarboxylic acid)/MWNTs modified electrode for simultaneous determination of guanine and adenine in DNA. CHINESE CHEM LETT 2011. [DOI: 10.1016/j.cclet.2011.01.024] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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32
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Deng P, Fei J, Zhang J, Feng Y. Determination of Trace Aluminum by Anodic Adsorptive Stripping Voltammetry Using a Multi-Walled Carbon Nanotube Modified Carbon Paste Electrode. ANAL LETT 2011. [DOI: 10.1080/00032719.2010.520382] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Wang P, Wu H, Dai Z, Zou X. Simultaneous detection of guanine, adenine, thymine and cytosine at choline monolayer supported multiwalled carbon nanotubes film. Biosens Bioelectron 2011; 26:3339-45. [DOI: 10.1016/j.bios.2011.01.011] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Revised: 01/06/2011] [Accepted: 01/07/2011] [Indexed: 02/07/2023]
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Simultaneous determination of adenine and guanine utilizing PbO2-carbon nanotubes-ionic liquid composite film modified glassy carbon electrode. J Electroanal Chem (Lausanne) 2011. [DOI: 10.1016/j.jelechem.2010.11.026] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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35
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The increasing importance of carbon nanotubes and nanostructured conducting polymers in biosensors. Anal Bioanal Chem 2010; 398:1575-89. [DOI: 10.1007/s00216-010-4054-4] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2010] [Revised: 07/17/2010] [Accepted: 07/20/2010] [Indexed: 11/26/2022]
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36
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Ordered mesoporous carbon modified carbon ionic liquid electrode for the electrochemical detection of double-stranded DNA. Biosens Bioelectron 2010; 25:2313-7. [DOI: 10.1016/j.bios.2010.03.019] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2010] [Revised: 03/14/2010] [Accepted: 03/16/2010] [Indexed: 11/18/2022]
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Lei J, Ju H. Nanotubes in biosensing. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2010; 2:496-509. [DOI: 10.1002/wnan.94] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Jianping Lei
- Department of Chemistry, Key Laboratory of Analytical Chemistry for Life Science (Ministry of Education of China), Nanjing University, Nanijng 210093, PR China
| | - Huangxian Ju
- Department of Chemistry, Key Laboratory of Analytical Chemistry for Life Science (Ministry of Education of China), Nanjing University, Nanijng 210093, PR China
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Abstract
The detection of mismatched base pairs in DNA plays a crucial role in the diagnosis of genetic-related diseases and conditions, especially for early stage treatment. Among the various biosensors that have been used for DNA detection, EC sensors show great promise because they are capable of precise DNA recognition and efficient signal transduction. Advancements in micro- and nanotechnologies, specifically fabrication techniques and new nanomaterials, have enabled for the development of highly sensitive, highly specific sensors making them attractive for the detection of small sequence variations. Furthermore, the integration of sensors with sample preparation and fluidic processes enables for rapid, multiplexed DNA detection essential for POC clinical diagnostics.
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Affiliation(s)
- Fang Wei
- Mechanical and Aerospace Engineering Department, School of Engineering and Applied Science, University of California, Los Angeles, California 90095, USA
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The immobilization of Cytochrome c on MWNT–PAMAM–Chit nanocomposite incorporated with DNA biocomposite film modified glassy carbon electrode for the determination of nitrite. J Solid State Electrochem 2010. [DOI: 10.1007/s10008-010-1010-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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40
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Abu-Salah KM, Alrokyan SA, Khan MN, Ansari AA. Nanomaterials as analytical tools for genosensors. SENSORS (BASEL, SWITZERLAND) 2010; 10:963-93. [PMID: 22315580 PMCID: PMC3270881 DOI: 10.3390/s100100963] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2009] [Revised: 01/08/2010] [Accepted: 01/11/2010] [Indexed: 12/27/2022]
Abstract
Nanomaterials are being increasingly used for the development of electrochemical DNA biosensors, due to the unique electrocatalytic properties found in nanoscale materials. They offer excellent prospects for interfacing biological recognition events with electronic signal transduction and for designing a new generation of bioelectronic devices exhibiting novel functions. In particular, nanomaterials such as noble metal nanoparticles (Au, Pt), carbon nanotubes (CNTs), magnetic nanoparticles, quantum dots and metal oxide nanoparticles have been actively investigated for their applications in DNA biosensors, which have become a new interdisciplinary frontier between biological detection and material science. In this article, we address some of the main advances in this field over the past few years, discussing the issues and challenges with the aim of stimulating a broader interest in developing nanomaterial-based biosensors and improving their applications in disease diagnosis and food safety examination.
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Affiliation(s)
- Khalid M. Abu-Salah
- King Abdullah Institute for Nanotechnology, King Saud University, Riyadh-11451, P.O Box-2454, Saudi Arabia; E-Mails: (K.M.A.-S.); (S.A.A.); (M.N.K.)
| | - Salman A. Alrokyan
- King Abdullah Institute for Nanotechnology, King Saud University, Riyadh-11451, P.O Box-2454, Saudi Arabia; E-Mails: (K.M.A.-S.); (S.A.A.); (M.N.K.)
| | - Muhammad Naziruddin Khan
- King Abdullah Institute for Nanotechnology, King Saud University, Riyadh-11451, P.O Box-2454, Saudi Arabia; E-Mails: (K.M.A.-S.); (S.A.A.); (M.N.K.)
| | - Anees Ahmad Ansari
- King Abdullah Institute for Nanotechnology, King Saud University, Riyadh-11451, P.O Box-2454, Saudi Arabia; E-Mails: (K.M.A.-S.); (S.A.A.); (M.N.K.)
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41
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Fernández-Baldo MA, Messina GA, Sanz MI, Raba J. Screen-printed immunosensor modified with carbon nanotubes in a continuous-flow system for the Botrytis cinerea determination in apple tissues. Talanta 2009; 79:681-6. [DOI: 10.1016/j.talanta.2009.04.059] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2009] [Revised: 04/23/2009] [Accepted: 04/23/2009] [Indexed: 11/28/2022]
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42
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Abdullin TI, Bondar’ OV, Rizvanov AA, Nikitina II. Carbon nanotube-based biosensors for DNA structure characterization. APPL BIOCHEM MICRO+ 2009. [DOI: 10.1134/s0003683809020203] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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43
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Abdullin TI, Nikitina II, Bondar’ OV. Adsorption and oxidation of purine bases and their derivatives on electrodes modified with carbon nanotubes. RUSS J ELECTROCHEM+ 2009. [DOI: 10.1134/s1023193508120069] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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44
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Dumitrescu I, Unwin PR, Macpherson JV. Electrochemistry at carbon nanotubes: perspective and issues. Chem Commun (Camb) 2009:6886-901. [DOI: 10.1039/b909734a] [Citation(s) in RCA: 254] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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45
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Lord H, Kelley SO. Nanomaterials for ultrasensitive electrochemical nucleic acids biosensing. ACTA ACUST UNITED AC 2009. [DOI: 10.1039/b814569e] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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46
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Beitollahi H, Ardakani MM, Ganjipour B, Naeimi H. Novel 2,2′-[1,2-ethanediylbis(nitriloethylidyne)]-bis-hydroquinone double-wall carbon nanotube paste electrode for simultaneous determination of epinephrine, uric acid and folic acid. Biosens Bioelectron 2008; 24:362-8. [DOI: 10.1016/j.bios.2008.04.009] [Citation(s) in RCA: 174] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Revised: 04/04/2008] [Accepted: 04/07/2008] [Indexed: 11/26/2022]
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47
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Karadeniz H, Erdem A, Caliskan A. Electrochemical Monitoring of DNA Hybridization by Multiwalled Carbon Nanotube Based Screen Printed Electrodes. ELECTROANAL 2008. [DOI: 10.1002/elan.200804270] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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48
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WANG YR, HU P, LIANG QL, LUO GA, WANG YM. Application of Carbon Nanotube Modified Electrode in Bioelectroanalysis. CHINESE JOURNAL OF ANALYTICAL CHEMISTRY 2008. [DOI: 10.1016/s1872-2040(08)60052-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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49
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Agüí L, Yáñez-Sedeño P, Pingarrón JM. Role of carbon nanotubes in electroanalytical chemistry. Anal Chim Acta 2008; 622:11-47. [DOI: 10.1016/j.aca.2008.05.070] [Citation(s) in RCA: 415] [Impact Index Per Article: 25.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2008] [Revised: 05/21/2008] [Accepted: 05/22/2008] [Indexed: 12/01/2022]
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50
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A disposable sensor based on immobilization of acetylcholinesterase to multiwall carbon nanotube modified screen-printed electrode for determination of carbaryl. J APPL ELECTROCHEM 2008. [DOI: 10.1007/s10800-008-9540-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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