Cyclic up-regulation fluorescence of pyrene excimer for studying polynucleotide kinase activity based on dual amplification

Integration of G-Quadruplex and Pyrene as a Simple and Efficient Ratiometric Fluorescent Platform That Programmed by Contrary Logic Pair for Highly Sensitive and Selective Coralyne (COR) Detection

The effective and accurate detection of the anticancer drug coralyne (COR) is highly significant for drug quality control, medication safety and good health. Although various COR sensors have been reported in recent years, previous ones can only exhibit single-signal output (turn ON or turn OFF) with poor reliability and anti-interference ability. Therefore, exploring novel platform with dual-signal response for COR detection is urgently needed. Herein, we reported the first ratiometric fluorescent platform for highly sensitive and selective COR detection by integrating G-quadruplex (G4) and Pyrene (Py) as signal probes and harnessing A-COR-A interaction. In the absence of COR, the platform shows a low fluorescence signal of PPIX (F₆₄₂) and a high one of Py monomer (F₃₈₃). With the addition of COR, two delicately designed poly-A ssDNAs will hybridize with each other via A-COR-A coordination to form complete G4, yielding the increased fluorescence signal of PPIX and the decreased one of Py due to the formation of Py excimer. Based on the above mechanism, we constructed a simple and efficient sensor that could realize the ratiometric fluorescent detection of COR with high sensitivity and selectivity. A linear relationship between F₆₄₂/F₃₈₃ and COR's concentration is obtained in the range from 1 nM to 8 μM. And the limit of detection of COR could reach to as low as 0.63 nM without any amplification, which is much lower than that of most COR sensors reported so far. Notably, the logical analysis of COR can be carried out under the control of a "YES-NOT" contrary logic pair, enabling the smart dual-channel response with an adequate S/N ratio and improved reliability and anti-interference ability. Moreover, this system also presents satisfactory performance in fetal bovine serum (FBS) samples.

High-Intensity Focused Ultrasound Combined with Ti3C2-TiO2 to Enhance Electrochemiluminescence of Luminol for the Sensitive Detection of Polynucleotide Kinase

Luminol is a classic electrochemiluminescence (ECL) luminophore. The luminol-O₂ ECL system suffers from a problem, that is, the conversion rate of dissolved O₂ into reactive oxygen species (ROS) is low. In this work, we used high-intensity focused ultrasound (HIFU) pretreatment combined with Ti₃C₂-TiO₂ to construct a highly sensitive luminol-O₂ ECL system for the specific detection of polynucleotide kinase (PNK) first. On the one hand, HIFU generated ROS in situ as a coreactant via the cavitation effect to boost the luminol emission. On the other hand, Ti₃C₂-TiO₂ was prepared in situ via Ti₃C₂ as a reducing agent, and it can aggregate and catalyze ROS generated in situ by HIFU. Moreover, the Ti on the Ti₃C₂-TiO₂ surface could bind to phosphate groups through chelation, thereby realizing highly specific detection of PNK. The sensor has a linear relationship range of 1.0 × 10^-5 to 10.0 U mL^-1, and the limit of detection is 1.48 × 10^-7 U mL^-1, which is superior to most existing methods. The sensor performance in HeLa cell lysate was measured with a satisfactory result. The designed ECL biosensor has potential applications in biological analysis and clinical diagnosis.

Sensitive electrochemiluminescence biosensing of polynucleotide kinase using the versatility of two-dimensional Ti3C2TX MXene nanomaterials

Electrochemiluminescence (ECL) is a powerful readout method for the development of (bio)sensors, whose performances depend on the electrode materials and the architecture of its surface. Herein, we demonstrate that the precise control of the sensing interface using the versatility of two-dimensional (2D) transition metal carbides (Ti₃C₂T_X MXene) leads to the enhancement of the ECL signal. This electrode material, which exhibits remarkable structural and electrochemical properties was decorated by the in situ formation of gold nanoparticles (AuNPs) owing to the Ti reducibility. Then, a large amount of the luminophore, Ru(bpy)₃²⁺, was immobilized on Ti₃C₂T_X MXene thanks to its unique negative charge and large specific surface area to obtain Ru-Ti₃C₂T_X-AuNPs. The presented approach exploits the high catalytic activity and excellent conductivity of this 2D nanomaterial as illustrated by the enhanced ECL emission performance of the Ru-Ti₃C₂T_X-AuNPs nanoprobes. Finally, DNA phosphorylated with polynucleotide kinase (PNK) was recognized efficiently by the chelation between Ti and phosphate group. A highly sensitive and selective ECL biosensor was developed for the detection of PNK and the screening of its inhibitors. A lower detection limit of 0.0002 U mL^-1 and wide linear relationship ranged from 0.002 to 10 U mL^-1 were obtained. Furthermore, the practicality of our method was tested in MCF-7 cell lysate, which opens enticing perspectives for future applications of Ti₃C₂T_X materials in the ECL bioanalysis field.

Fluorescence Thermometer: Intermediation of the Fontal Temperature and Light

The rapid advance of thermal materials and fluorescence spectroscopy has extensively promoted micro-scale fluorescence thermometry development in recent years. Based on the advantages of fast response, high sensitivity, simple operation,...

Electrochemical DNA Sensors Based on MoS2-AuNPs for Polynucleotide Kinase Activity and Inhibition Assay

The determination of T4 polynucleotide kinase (PNK) activity and the screening of PNK inhibitors are critical to disease diagnosis and drug discovery. Numerous electrochemical strategies have been developed for the sensitive measurement of PNK activity and inhibition. However, they often suffer from additional labels and multiple steps of the detection process for the electrochemical readout. Herein, we have demonstrated an electrochemical DNA (E-DNA) sensor for the one-step detection of PNK with "signal-on" readout with no need for additional labels. In our design, the highly switchable double-stranded DNA (dsDNA) probes are immobilized on the gold nanoparticle-decorated molybdenum disulfide nanomaterial (MoS₂-AuNPs), which possesses large surface area and high conductivity for elevating the signal gain in the PNK detection. This signal-on E-DNA sensor integrated with MoS₂-AuNPs exhibits a much higher sensitivity than that without MoS₂-AuNPs, showing a detection limit of 2.18 × 10^-4 U/mL. Furthermore, this assay shows high selectivity, with the ability to discriminate PNK from other enzymes and proteins, and can be utilized to screen inhibitors. The proposed sensor is easy to operate with one-step readout and robust for PNK detection in the biological matrix and shows great potential for point-of-care in clinical diagnostics and drug screening.

A novel fluorescence method for the highly sensitive detection of T4 polynucleotide kinase based on polydopamine nanotubes

A novel fluorescence method has been developed for the detection of T4 PNK using FRET between dye-labeled ssDNA and PDANTs.

An isothermal electrochemical biosensor for the sensitive detection of microRNA based on a catalytic hairpin assembly and supersandwich amplification

A novel isothermal electrochemical biosensor was proposed for the sensitive detection of microRNA (miRNA) based on the ingenious combination of the target-catalyzed hairpin assembly (CHA) and supersandwich amplification strategies. Since miRNA-221 has been reported to be overexpressed in cancers and has been a potentially useful biomarker for the diagnosis of the related diseases, miRNA-221 was chosen as a model target miRNA. The target miRNA-221 triggered a toehold strand displacement assembly of the two hairpin substrates, which led to the cyclicality of the target miRNA and the CHA products. Subsequently, the CHA products hybridized with a capture probe on the electrode and the exposed stem of the CHA products was further used to propagate the supersandwich. After this, the signal probe was modified with horseradish peroxidase (HRP) to form a supersandwich multiplex HRP-DNA label, which could achieve an amplified electrochemical signal. Using the isothermal dual signal amplification strategies, miRNA-221 as low as 0.6 pM (3σ) could be detected. In addition, this biosensor showed high selectivity and could discriminate miRNA-221 from the homologous miRNAs. Note that human miRNA from cancer cells could also be detected and the results were in excellent agreement with those obtained using qRT-PCR. Given that the biosensor avoided the introduction of nanoparticles, the limitation of using the nanoparticles was overcome. The proposed biosensor has great potential for broad applications in the field of clinical analysis.

Circularly Polarized Luminescence from a Pyrene-Cyclodextrin Supra-Dendron

Soft nanomaterials with circularly polarized luminescence (CPL) have been currently attracting great interest. Here, we report a pyrene-containing π-peptide dendron hydrogel, which shows 1D and 2D nanostructures with varied CPL activities. It was found that the individual dendrons formed hydrogels in a wide pH range (3-12) and self-assembled into helices with pH-tuned pitches. Through chirality transfer, the pyrene unit could show CPL originated from both the monomer and excimer bands. When cyclodextrin was introduced, different supra-dendrons were obtained with β-cyclodextrin (PGAc@β-CD) and γ-cyclodextrin (PGAc@γ-CD) through host-guest interactions, respectively. Interestingly, the PGAc@β-CD and PGAc@γ-CD supra-dendrons self-assembled into 2D nanosheet and entangled nanofibers, respectively, showing cyclodextrin induced circularly polarized emission from both the monomer and excimer bands of the pyrene moiety. Thus, through a simple host-guest interaction, both the nanostructures and the chiroptical activities could be modulated.

Recent Advances in Nucleic Acid Targeting Probes and Supramolecular Constructs Based on Pyrene-Modified Oligonucleotides

In this review, we summarize the recent advances in the use of pyrene-modified oligonucleotides as a platform for functional nucleic acid-based constructs. Pyrene is of special interest for the development of nucleic acid-based tools due to its unique fluorescent properties (sensitivity of fluorescence to the microenvironment, ability to form excimers and exciplexes, long fluorescence lifetime, high quantum yield), ability to intercalate into the nucleic acid duplex, to act as a π-π-stacking (including anchoring) moiety, and others. These properties of pyrene have been used to construct novel sensitive fluorescent probes for the sequence-specific detection of nucleic acids and the discrimination of single nucleotide polymorphisms (SNPs), aptamer-based biosensors, agents for binding of double-stranded DNAs, and building blocks for supramolecular complexes. Special attention is paid to the influence of the design of pyrene-modified oligonucleotides on their properties, i.e., the structure-function relationships. The perspectives for the applications of pyrene-modified oligonucleotides in biomolecular studies, diagnostics, and nanotechnology are discussed.

Detection of T4 Polynucleotide Kinase via Allosteric Aptamer Probe Platform

As a vital enzyme in DNA phosphorylation and restoration, T4 polynucleotide kinase (T4 PNK) has aroused great interest in recent years. Therefore, numerous strategies have been established for highly sensitive detection of T4 PNK based on diverse signal amplification techniques. However, they often need sophisticated design, a variety of auxiliary reagents and enzymes, or cumbersome manipulations. We have designed a new kind of allosteric aptamer probe (AAP) consisting of streptavidin (SA) aptamer and the complementary DNA (cDNA) for simple detection of T4 PNK without signal amplification and with minimized interference in complex biological samples. When the 5'-terminus of the cDNA is phosphorylated by T4 PNK, the cDNA is degraded by lambda exonuclease to release the fluorescein amidite (FAM)-labeled SA aptamer, which subsequently binds to streptavidin beads. The enhancement of the fluorescence signal on SA beads can be detected precisely and easily by a microscope or flow cytometer. Our method performs well in complex biological samples as a result of the enrichment of the signaling molecules on beads, as well as simple manipulations to discard the background interference and nonbinding molecules. Without signal amplification techniques, our AAP method not only avoids complicated manipulations but also decreases the time required. With the advantages of ease of operation, reliability, and robustness for T4 PNK detection in buffer as well as real biological samples, the AAP has great potential for clinical diagnostics, inhibitor screening, and drug discovery.