1
|
Kumar P, Gangopadhyay G. Glycolytic Wave Patterns in a Simple Reaction-diffusion System with Inhomogeneous Influx: Dynamic Transitions. Chemphyschem 2023; 24:e202200643. [PMID: 36478341 DOI: 10.1002/cphc.202200643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 11/21/2022] [Indexed: 12/12/2022]
Abstract
An inhomogeneous profile of chemostatted species generates a rich variety of patterns in glycolytic waves depicted in a Selkov reaction-diffusion framework here. A key role played by diffusion amplitude and symmetry in the chemostatted species profile in dictating the fate of local spatial dynamics involving periodic, quasiperiodic, and chaotic patterns and transitions among them are investigated systematically. More importantly, various dynamic transitions, including wave propagation direction changes, are illustrated in interesting situations. Besides numerical results, our analytical formulation of the amplitude equation connecting complex Ginzburg-Landau and Lambda-omega representation shed light on the phase dynamics of the system. This systematic study of the glycolytic reaction-diffusion wave is in line with previous experimental results in open spatial reactor and will provide a knowledge about the dynamics that shape and control biological information processing and related phenomena.
Collapse
Affiliation(s)
- Premashis Kumar
- S. N. Bose National Centre For Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata, 700 106, India
| | - Gautam Gangopadhyay
- S. N. Bose National Centre For Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata, 700 106, India
| |
Collapse
|
2
|
Liu Z, Wang L, Meng Y, He T, He S, Yang Y, Wang L, Tian J, Li D, Yan P, Gong M, Liu Q, Xiao Q. All-fiber high-speed image detection enabled by deep learning. Nat Commun 2022; 13:1433. [PMID: 35301332 PMCID: PMC8930987 DOI: 10.1038/s41467-022-29178-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 02/24/2022] [Indexed: 12/29/2022] Open
Abstract
Ultra-high-speed imaging serves as a foundation for modern science. While in biomedicine, optical-fiber-based endoscopy is often required for in vivo applications, the combination of high speed with the fiber endoscopy, which is vital for exploring transient biomedical phenomena, still confronts some challenges. We propose all-fiber imaging at high speeds, which is achieved based on the transformation of two-dimensional spatial information into one-dimensional temporal pulsed streams by leveraging high intermodal dispersion in a multimode fiber. Neural networks are trained to reconstruct images from the temporal waveforms. It can not only detect content-aware images with high quality, but also detect images of different kinds from the training images with slightly reduced quality. The fiber probe can detect micron-scale objects with a high frame rate (15.4 Mfps) and large frame depth (10,000). This scheme combines high speeds with high mechanical flexibility and integration and may stimulate future research exploring various phenomena in vivo.
Collapse
Affiliation(s)
- Zhoutian Liu
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Lele Wang
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Yuan Meng
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Tiantian He
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Sifeng He
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Yousi Yang
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Liuyue Wang
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Jiading Tian
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China
| | - Dan Li
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China.,Key Laboratory of Photonic Control Technology, Ministry of Education, Tsinghua University, Beijing, 100084, China
| | - Ping Yan
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China.,Key Laboratory of Photonic Control Technology, Ministry of Education, Tsinghua University, Beijing, 100084, China
| | - Mali Gong
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China.,Key Laboratory of Photonic Control Technology, Ministry of Education, Tsinghua University, Beijing, 100084, China
| | - Qiang Liu
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China.,Key Laboratory of Photonic Control Technology, Ministry of Education, Tsinghua University, Beijing, 100084, China
| | - Qirong Xiao
- State Key Laboratory of Precision Measurement Technology and Instruments, Department of Precision Instrument, Tsinghua University, Beijing, 100084, China. .,Key Laboratory of Photonic Control Technology, Ministry of Education, Tsinghua University, Beijing, 100084, China.
| |
Collapse
|
3
|
Kumar P, Gangopadhyay G. Nonequilibrium thermodynamics of glycolytic traveling wave: Benjamin-Feir instability. Phys Rev E 2021; 104:014221. [PMID: 34412344 DOI: 10.1103/physreve.104.014221] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 07/08/2021] [Indexed: 11/07/2022]
Abstract
Evolution of the nonequilibrium thermodynamic entities corresponding to dynamics of the Hopf instabilities and traveling waves at a nonequilibrium steady state of a spatially extended glycolysis model is assessed here by implementing an analytically tractable scheme incorporating a complex Ginzburg-Landau equation (CGLE). In the presence of self and cross diffusion, a more general amplitude equation exploiting the multiscale Krylov-Bogoliubov averaging method serves as an essential tool to reveal the various dynamical instability criteria, especially Benjamin-Feir (BF) instability, to estimate the corresponding nonlinear dispersion relation of the traveling wave pattern. The critical control parameter, wave-number selection criteria, and magnitude of the complex amplitude for traveling waves are modified by self- and cross-diffusion coefficients within the oscillatory regime, and their variabilities are exhibited against the amplitude equation. Unlike the traveling waves, a low-amplitude broad region appears for the Hopf instability in the concentration dynamics as the system phase passes through minima during its variation with the control parameter. The total entropy production rate of the uniform Hopf oscillation and glycolysis wave not only qualitatively reflects the global dynamics of concentrations of intermediate species but almost quantitatively. Despite the crucial role of diffusion in generating and shaping the traveling waves, the diffusive part of the entropy production rate has a negligible contribution to the system's total entropy production rate. The Hopf instability shows a more complex and colossal change in the energy profile of the open nonlinear system than in the traveling waves. A detailed analysis of BF instability shows a contrary nature of the semigrand Gibbs free energy with discrete and continuous wave numbers for the traveling wave. We hope the Hopf and traveling wave pattern around the BF instability in terms of energetics and dissipation will open up new applications of such dynamical phenomena.
Collapse
Affiliation(s)
- Premashis Kumar
- S. N. Bose National Centre For Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700 106, India
| | - Gautam Gangopadhyay
- S. N. Bose National Centre For Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700 106, India
| |
Collapse
|
4
|
Abstract
We develop a novel compressive coded rotating mirror (CCRM) camera to capture events at high frame rates in passive mode with a compact instrument design at a fraction of the cost compared to other high-speed imaging cameras. Operation of the CCRM camera is based on amplitude optical encoding (grey scale) and a continuous frame sweep across a low-cost detector using a motorized rotating mirror system which can achieve single pixel shift between adjacent frames. Amplitude encoding and continuous frame overlapping enable the CCRM camera to achieve a high number of captured frames and high temporal resolution without making sacrifices in the spatial resolution. Two sets of dynamic scenes have been captured at up to a 120 Kfps frame rate in both monochrome and colored scales in the experimental demonstrations. The obtained heavily compressed data from the experiment are reconstructed using the optimization algorithm under the compressive sensing (CS) paradigm and the highest sequence depth of 1400 captured frames in a single exposure has been achieved with the highest compression ratio of 368 compared to other CS-based high-speed imaging technologies. Under similar conditions the CCRM camera is 700× faster than conventional rotating mirror based imaging devices and could reach a frame rate of up to 20 Gfps.
Collapse
|
5
|
Weng Y, Wu G, Mei L, Wang Q, Goda K, Liu S, Lei C. Temporally interleaved optical time-stretch imaging. OPTICS LETTERS 2020; 45:2387-2390. [PMID: 32287240 DOI: 10.1364/ol.381006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 03/15/2020] [Indexed: 06/11/2023]
Abstract
Optical time-stretch imaging has shown potential in diverse fields for its capability of acquiring images at high speed and high resolution. However, its wide application is hindered by the stringent requirement on the instrumentation hardware caused by the high-speed serial data stream. Here we demonstrate temporally interleaved optical time-stretch imaging that lowers the requirement without sacrificing the frame rate or spatial resolution by interleaving the high-speed data stream into multiple channels in the time domain. Its performance is validated with both a United States Air Force (USAF)-1951 resolution chart and a single-crystal diamond film. We achieve a 101 Mfps 1D scanning rate and 3 µm spatial resolution with only a 2.5 GS/s sampling rate by using a two-channel-interleaved system.
Collapse
|
6
|
Li B, Wei Y, Kang J, Zhang C, Wong KKY. Parametric spectrotemporal analyzer based on four-wave mixing Bragg scattering. OPTICS LETTERS 2018; 43:1922-1925. [PMID: 29652399 DOI: 10.1364/ol.43.001922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2017] [Accepted: 03/24/2018] [Indexed: 06/08/2023]
Abstract
A parametric spectro-temporal analyzer (PASTA) has been demonstrated as an ultrafast single-shot spectral analyzing technique. However, the relatively complex system configuration and the limited wavelength measurement range limit its practical application. In this work, a new system design utilizing a four-wave mixing Bragg scattering (FWM-BS) process is presented that significantly simplifies the implementation. More importantly, owing to the large parametric conversion bandwidth of the FWM-BS process, the maximum wavelength measurement range has been expanded to around 30 nm. In addition, the detection sensitivity is also enhanced by 10 dB. Our work thus represents a critical step in realizing the practical application of the PASTA technique.
Collapse
|
7
|
Sidorenko P, Lahav O, Cohen O. Ptychographic ultrahigh-speed imaging. OPTICS EXPRESS 2017; 25:10997-11008. [PMID: 28788786 DOI: 10.1364/oe.25.010997] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We propose and demonstrate numerically a simple method for ultrahigh-speed imaging of complex (amplitude and phase) samples. Our method exploits redundancy in single-shot ptychography (SSP) for reconstruction of multiple frames from a single camera snapshot. We term the method Time-resolved Imaging by Multiplexed Ptychography (TIMP). We demonstrate TIMP numerically-reconstructing 15 frames of a complexed-valued dynamic object from a single noisy camera snapshot. Experimentally, we demonstrate SSP with single pulse illumination with pulse duration of 150 psec, where its spectral bandwidth can support 30 fsec pulses.
Collapse
|
8
|
Pal A, Khajornrungruang P, Netzband C, Alety S, Babu SV. Observation of the formation of anisotropic silver microstructures by evanescent wave and electron microscopy. NANOTECHNOLOGY 2016; 27:075708. [PMID: 26789822 DOI: 10.1088/0957-4484/27/7/075708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Using a well-known galvanic displacement reaction, ∼25-40 μm long silver ribbons grown after mixing ∼50 nm copper particles with AgNO3 solution were observed as a function of Ag(+) concentration and their growth was characterized in real-time and in situ by evanescent wave (EW) microscopy. At low Ag(+) concentration, chain-like structures consisting of both Ag and Cu were observed. When the sequence of mixing these two reactants was reversed, different Ag microstructures (platelets and dendrites) were formed and were also characterized by EW microscopy. Dependence of the morphology of all these microstructures on silver ion concentration was determined by EW microscopy in conjunction with scanning and transmission electron microscopy.
Collapse
Affiliation(s)
- Angshuman Pal
- Center of Advance Materials Processing, Clarkson University Potsdam, NY 13676, USA
| | | | | | | | | |
Collapse
|
9
|
Bosworth BT, Stroud JR, Tran DN, Tran TD, Chin S, Foster MA. High-speed flow microscopy using compressed sensing with ultrafast laser pulses. OPTICS EXPRESS 2015; 23:10521-10532. [PMID: 25969092 DOI: 10.1364/oe.23.010521] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We demonstrate an imaging system employing continuous high-rate photonically-enabled compressed sensing (CHiRP-CS) to enable efficient microscopic imaging of rapidly moving objects with only a few percent of the samples traditionally required for Nyquist sampling. Ultrahigh-rate spectral shaping is achieved through chirp processing of broadband laser pulses and permits ultrafast structured illumination of the object flow. Image reconstructions of high-speed microscopic flows are demonstrated at effective rates up to 39.6 Gigapixel/sec from a 720-MHz sampling rate.
Collapse
|
10
|
Lei C, Chen H, Xing F, Chen M, Yang S, Xie S. Time-stretch high-speed microscopic imaging system based on temporally and spectrally shaped amplified spontaneous emission. OPTICS LETTERS 2015; 40:946-9. [PMID: 25768153 DOI: 10.1364/ol.40.000946] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
In this Letter, a time-stretch high-speed microscopic imaging system based on temporally and spectrally shaped amplified spontaneous emission (ASE) is proposed and experimentally demonstrated. We significantly reduced the complexity and cost of the light source by applying ASE in the time-stretch microscopic imaging system. Furthermore, by slicing and preprocessing the spectrum of the ASE with a Fabry-Perot (F-P) filter, the random intensity vibration of the ASE can be significantly suppressed, which would notably simplify the image recovery process afterward. The resolution of the proposed system is better than 35 μm and the effective 1D scan rate could reach 50 MHz.
Collapse
|
11
|
Zhang C, Wei X, Marhic ME, Wong KKY. Ultrafast and versatile spectroscopy by temporal Fourier transform. Sci Rep 2014; 4:5351. [PMID: 24939667 PMCID: PMC4061551 DOI: 10.1038/srep05351] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Accepted: 06/02/2014] [Indexed: 11/23/2022] Open
Abstract
One of the most remarkable and useful properties of a spatially converging lens system is its inherent ability to perform the Fourier transform; the same applies for the time-lens system. At the back focal plane of the time-lens, the spectral information can be instantaneously obtained in the time axis. By implementing temporal Fourier transform for spectroscopy applications, this time-lens-based architecture can provide orders of magnitude improvement over the state-of-art spatial-dispersion-based spectroscopy in terms of the frame rate. On the other hand, in addition to the single-lens structure, the multi-lens structures (e.g. telescope or wide-angle scope) will provide very versatile operating conditions. Leveraging the merit of instantaneous response, as well as the flexible lens structure, here we present a 100-MHz frame rate spectroscopy system – the parametric spectro-temporal analyzer (PASTA), which achieves 17 times zoom in/out ratio for different observation ranges.
Collapse
Affiliation(s)
- Chi Zhang
- Photonic Systems Research Laboratory, Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong
| | - Xiaoming Wei
- Photonic Systems Research Laboratory, Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong
| | - Michel E Marhic
- College of Engineering, Swansea University, Singleton Park, Wales SA2 8PP, UK
| | - Kenneth K Y Wong
- Photonic Systems Research Laboratory, Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong
| |
Collapse
|
12
|
Deng Y, Li M, Huang N, Azaña J, Zhu N. Serial time-encoded amplified microscopy for ultrafast imaging based on multi-wavelength laser. CHINESE SCIENCE BULLETIN-CHINESE 2014. [DOI: 10.1007/s11434-014-0381-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
13
|
Chen H, Lei C, Xing F, Weng Z, Chen M, Yang S, Xie S. Multiwavelength time-stretch imaging system. OPTICS LETTERS 2014; 39:2202-5. [PMID: 24686711 DOI: 10.1364/ol.39.002202] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A high-speed microscopic imaging system based on a multiwavelength source and time-stretch technique is proposed and demonstrated. We realize an imaging system at 1D scan rate of 80 MHz with 20 resolvable points. This scheme breaks the bottleneck of large bandwidth and high repetition rate in mode-lock lasers and has great potential for imaging system integration.
Collapse
|
14
|
Parametric spectro-temporal analyzer (PASTA) for real-time optical spectrum observation. Sci Rep 2013; 3:2064. [PMID: 23793031 PMCID: PMC3690390 DOI: 10.1038/srep02064] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2013] [Accepted: 06/07/2013] [Indexed: 11/08/2022] Open
Abstract
Real-time optical spectrum analysis is an essential tool in observing ultrafast phenomena, such as the dynamic monitoring of spectrum evolution. However, conventional method such as optical spectrum analyzers disperse the spectrum in space and allocate it in time sequence by mechanical rotation of a grating, so are incapable of operating at high speed. A more recent method all-optically stretches the spectrum in time domain, but is limited by the allowable input condition. In view of these constraints, here we present a real-time spectrum analyzer called parametric spectro-temporal analyzer (PASTA), which is based on the time-lens focusing mechanism. It achieves a frame rate as high as 100 MHz and accommodates various input conditions. As a proof of concept and also for the first time, we verify its applications in observing the dynamic spectrum of a Fourier domain mode-locked laser, and the spectrum evolution of a laser cavity during its stabilizing process.
Collapse
|
15
|
Xing F, Chen H, Chen M, Yang S, Xie S. Simple approach for fast real-time line scan microscopic imaging. APPLIED OPTICS 2013; 52:7049-7053. [PMID: 24085222 DOI: 10.1364/ao.52.007049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Accepted: 09/11/2013] [Indexed: 06/02/2023]
Abstract
A simple fast line scan microscopic imaging approach based on a wavelength-space-time mapping technique has been proposed. With a lab-made subpicosecond pulse laser with 10 dB bandwidth of 12 nm, we experimentally demonstrate a free-space optical apparatus designed for fast line scan imaging of microscopic objects. This system has a spatial resolution of 22 μm, field-of-view of 2.5 mm, and line scan rate of 20.9 MHz. By imaging a modified unitraveling carrier photodetector, we demonstrate the application of semiconductor device inspection for speeding up quality control.
Collapse
|
16
|
Mahjoubfar A, Goda K, Betts G, Jalali B. Optically amplified detection for biomedical sensing and imaging. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2013; 30:2124-2132. [PMID: 24322867 DOI: 10.1364/josaa.30.002124] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Optical sensing and imaging methods for biomedical applications, such as spectroscopy and laser-scanning fluorescence microscopy, are incapable of performing sensitive detection at high scan rates due to the fundamental trade-off between sensitivity and speed. This is because fewer photons are detected during short integration times and hence the signal falls below the detector noise. Optical postamplification can, however, overcome this challenge by amplifying the collected optical signal after collection and before photodetection. Here we present a theoretical analysis of the sensitivity of high-speed biomedical sensing and imaging systems enhanced by optical postamplifiers. As a case study, we focus on Raman amplifiers because they produce gain at any wavelength within the gain medium's transparency window and are hence suitable for biomedical applications. Our analytical model shows that when limited by detector noise, such optically postamplified systems can achieve a sensitivity improvement of up to 20 dB in the visible to near-infrared spectral range without sacrificing speed. This analysis is expected to be valuable for design of fast real-time biomedical sensing and imaging systems.
Collapse
|
17
|
Zhou Y. Ultrasound-mediated drug/gene delivery in solid tumor treatment. JOURNAL OF HEALTHCARE ENGINEERING 2013; 4:223-54. [PMID: 23778013 DOI: 10.1260/2040-2295.4.2.223] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Ultrasound is an emerging modality for drug delivery in chemotherapy. This paper reviews this novel technology by first introducing the designs and characteristics of three classes of drug/gene vehicles, microbubble (including nanoemulsion), liposomes, and micelles. In comparison to conventional free drug, the targeted drug-release and delivery through vessel wall and interstitial space to cancerous cells can be activated and enhanced under certain sonication conditions. In the acoustic field, there are several reactions of these drug vehicles, including hyperthermia, bubble cavitation, sonoporation, and sonodynamics, whose physical properties are illustrated for better understanding of this approach. In vitro and in vivo results are summarized, and future directions are discussed. Altogether, ultrasound-mediated drug/gene delivery under imaging guidance provides a promising option in cancer treatment with enhanced agent release and site specificity and reduced toxicity.
Collapse
Affiliation(s)
- Yufeng Zhou
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore.
| |
Collapse
|
18
|
|
19
|
Zhang C, Qiu Y, Zhu R, Wong KKY, Tsia KK. Serial time-encoded amplified microscopy (STEAM) based on a stabilized picosecond supercontinuum source. OPTICS EXPRESS 2011; 19:15810-15816. [PMID: 21934943 DOI: 10.1364/oe.19.015810] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Temporal stability of the broadband source, such as supercontinuum (SC), is the key enabling factor for realizing high performance ultrafast serial time-encoded amplified microscopy (STEAM). Owing to that the long-pulse SC (picosecond to nanosecond) generation generally results in an ultrabroadband spectrum with significant pulse-to-pulse fluctuation, only the ultrashort-pulse (femtosecond) SC sources, which offer better temporal stability, have been employed in STEAM so far. Here we report a simple approach to achieve active control of picosecond SC stability and to help extend the applicability of SC in STEAM from the femtosecond to the picosecond or even nanosecond regimes. We experimentally demonstrate stable single-shot STEAM imaging at a frame rate of 4.9 MHz using the CW-triggered picosecond SC source. Such CW-stabilized SC can greatly reduce the shot-to-shot fluctuation, and thus improves the STEAM image quality significantly.
Collapse
Affiliation(s)
- Chi Zhang
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong
| | | | | | | | | |
Collapse
|
20
|
de la Fuente IM. Quantitative analysis of cellular metabolic dissipative, self-organized structures. Int J Mol Sci 2010; 11:3540-99. [PMID: 20957111 PMCID: PMC2956111 DOI: 10.3390/ijms11093540] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2010] [Revised: 09/11/2010] [Accepted: 09/12/2010] [Indexed: 11/16/2022] Open
Abstract
One of the most important goals of the postgenomic era is understanding the metabolic dynamic processes and the functional structures generated by them. Extensive studies during the last three decades have shown that the dissipative self-organization of the functional enzymatic associations, the catalytic reactions produced during the metabolite channeling, the microcompartmentalization of these metabolic processes and the emergence of dissipative networks are the fundamental elements of the dynamical organization of cell metabolism. Here we present an overview of how mathematical models can be used to address the properties of dissipative metabolic structures at different organizational levels, both for individual enzymatic associations and for enzymatic networks. Recent analyses performed with dissipative metabolic networks have shown that unicellular organisms display a singular global enzymatic structure common to all living cellular organisms, which seems to be an intrinsic property of the functional metabolism as a whole. Mathematical models firmly based on experiments and their corresponding computational approaches are needed to fully grasp the molecular mechanisms of metabolic dynamical processes. They are necessary to enable the quantitative and qualitative analysis of the cellular catalytic reactions and also to help comprehend the conditions under which the structural dynamical phenomena and biological rhythms arise. Understanding the molecular mechanisms responsible for the metabolic dissipative structures is crucial for unraveling the dynamics of cellular life.
Collapse
Affiliation(s)
- Ildefonso Martínez de la Fuente
- Institute of Parasitology and Biomedicine "López-Neyra" (CSIC), Parque Tecnológico de Ciencias de la Salud, Avenida del Conocimiento s/n, 18100 Armilla (Granada), Spain; E-Mail: ; Tel.: +34-958-18-16-21
| |
Collapse
|
21
|
Park J, Fan Z, Deng CX. Effects of shear stress cultivation on cell membrane disruption and intracellular calcium concentration in sonoporation of endothelial cells. J Biomech 2010; 44:164-9. [PMID: 20863503 DOI: 10.1016/j.jbiomech.2010.09.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2010] [Revised: 09/01/2010] [Accepted: 09/06/2010] [Indexed: 12/23/2022]
Abstract
Microbubble facilitated ultrasound (US) application can enhance intracellular delivery of drugs and genes in endothelial cells cultured in static condition by transiently disrupting the cell membrane, or sonoporation. However, endothelial cells in vivo that are constantly exposed to blood flow may exhibit different sonoporation characteristics. This study investigates the effects of shear stress cultivation on sonoporation of endothelial cells in terms of membrane disruption and changes in the intracellular calcium concentration ([Ca(2+)](i)). Sonoporation experiments were conducted using murine brain microvascular endothelial (bEnd.3) cells and human umbilical vein endothelial cells (HUVECs) cultured under static or shear stress (5 dyne/cm(2) for 5 days) condition in a microchannel environment. The cells were exposed to a short US tone burst (1.25 MHz, 8 μs duration, 0.24 MPa) in the presence of Definity™ microbubbles to facilitate sonoporation. Membrane disruption was assessed by propidium iodide (PI) and changes in [Ca(2+)](i) measured by fura-2AM. Results from this study show that shear stress cultivation significantly reduced the impact of ultrasound-driven microbubbles activities on endothelial cells. Cells cultured under shear stress condition exhibited much lower percentage with membrane disruption and changes in [Ca(2+)](i) compared to statically cultured cells. The maximum increases of PI uptake and [Ca(2+)](i) were also significantly lower in the shear stress cultured cells. In addition, the extent of [Ca(2+)](i) waves in shear cultured HUVECs was reduced compared to the statically cultured cells.
Collapse
Affiliation(s)
- Juyoung Park
- Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Boulevard, Ann Arbor, MI 48109-2099, USA
| | | | | |
Collapse
|
22
|
Park J, Fan Z, Kumon RE, El-Sayed MEH, Deng CX. Modulation of intracellular Ca2+ concentration in brain microvascular endothelial cells in vitro by acoustic cavitation. ULTRASOUND IN MEDICINE & BIOLOGY 2010; 36:1176-87. [PMID: 20620704 PMCID: PMC3139909 DOI: 10.1016/j.ultrasmedbio.2010.04.006] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2009] [Revised: 03/04/2010] [Accepted: 04/14/2010] [Indexed: 05/08/2023]
Abstract
Localized delivery of therapeutic agents through the blood-brain barrier (BBB) is a clinically significant task that remains challenging. Ultrasound (US) application after intravenous administration of microbubbles has been shown to generate localized BBB opening in animal models but the detailed mechanisms are not yet fully described. The current study investigates the effects of US-stimulated microbubbles on in vitro murine brain microvascular endothelial (bEnd.3) cells by monitoring sonoporation and changes in intracellular calcium concentration ([Ca(2+)](i)) using real-time fluorescence and high-speed brightfield microscopy. Cells seeded in microchannels were exposed to a single US pulse (1.25 MHz, 10 cycles, 0.24 MPa peak negative pressure) in the presence of Definity microbubbles and extracellular calcium concentration [Ca(2+)](o) = 0.9 mM. Disruption of the cell membrane was assessed using propidium iodide (PI) and change in the [Ca(2+)](i) was measured using fura-2. Cells adjacent to a microbubble exhibited immediate [Ca(2+)](i) changes after US pulse with and without PI uptake and the [Ca(2+)](i) changes were twice as large in cells with PI uptake. Cell viability assays showed that sonoporated cells could survive with modulation of [Ca(2+)](i) and uptake of PI. Cells located near sonoporated cells were observed to exhibit changes in [Ca(2+)](i) that were delayed from the time of US application and without PI uptake. These results demonstrate that US-stimulated microbubbles not only directly cause changes in [Ca(2+)](i) in brain endothelial cells in addition to sonoporation but also generate [Ca(2+)](i) transients in cells not directly interacting with microbubbles, thereby affecting cells in larger regions beyond the cells in contact with microbubbles.
Collapse
Affiliation(s)
| | | | | | | | - Cheri X. Deng
- Address correspondence to: Cheri X. Deng, Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Blvd, Ann Arbor, MI 48109–2099, USA. Tel: +1 734-936-2855; Fax: +1 734-936-1905.
| |
Collapse
|
23
|
Tsia KK, Goda K, Capewell D, Jalali B. Performance of serial time-encoded amplified microscope. OPTICS EXPRESS 2010; 18:10016-28. [PMID: 20588855 DOI: 10.1364/oe.18.010016] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Serial time-encoded amplified microscopy (STEAM) is an entirely new imaging modality that enables ultrafast continuous real-time imaging with high sensitivity. By means of optical image amplification, STEAM overcomes the fundamental tradeoff between sensitivity and speed that affects virtually all optical imaging systems. Unlike the conventional microscope systems, the performance of STEAM depends not only on the lenses, but also on the properties of other components that are unique to STEAM, namely the spatial disperser, the group velocity dispersion element, and the back-end electronic digitizer. In this paper, we present an analysis that shows how these considerations affect the spatial resolution, and how they create a trade-off between the number of pixels and the frame rate of the STEAM imager. We also quantify how STEAM's optical image amplification feature improves the imaging sensitivity. These analyses not only provide valuable insight into the operation of STEAM technology but also serve as a blue print for implementation and optimization of this new imaging technology.
Collapse
Affiliation(s)
- Kevin K Tsia
- UCLA Photonics Laboratory, University of California, Los Angeles, CA, 90095 USA.
| | | | | | | |
Collapse
|
24
|
Postnikov EB, Verisokin AY, Verveyko DV, Lavrova AI. Self-sustained biochemical oscillations and waves with a feedback determined only by boundary conditions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 81:052901. [PMID: 20866284 DOI: 10.1103/physreve.81.052901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2009] [Revised: 03/05/2010] [Indexed: 05/29/2023]
Abstract
We discuss the biochemical three-dimensional reaction-diffusion model, which does not provide temporal self-sustained oscillations via reaction terms. However, the self-sustained oscillations and waves could be obtained using the proper boundary conditions for systems with a finite thickness. We have carried out in our numerical simulation the results quite corresponding to the experimental ones. We discuss the range of models for which our approach is applicable.
Collapse
Affiliation(s)
- E B Postnikov
- Department of Theoretical Physics, Kursk State University, Radishcheva Street 33, 305000 Kursk, Russia.
| | | | | | | |
Collapse
|
25
|
Goda K, Tsia KK, Jalali B. Serial time-encoded amplified imaging for real-time observation of fast dynamic phenomena. Nature 2009; 458:1145-9. [PMID: 19407796 DOI: 10.1038/nature07980] [Citation(s) in RCA: 238] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2008] [Accepted: 03/02/2009] [Indexed: 11/09/2022]
Abstract
Ultrafast real-time optical imaging is an indispensable tool for studying dynamical events such as shock waves, chemical dynamics in living cells, neural activity, laser surgery and microfluidics. However, conventional CCDs (charge-coupled devices) and their complementary metal-oxide-semiconductor (CMOS) counterparts are incapable of capturing fast dynamical processes with high sensitivity and resolution. This is due in part to a technological limitation-it takes time to read out the data from sensor arrays. Also, there is the fundamental compromise between sensitivity and frame rate; at high frame rates, fewer photons are collected during each frame-a problem that affects nearly all optical imaging systems. Here we report an imaging method that overcomes these limitations and offers frame rates that are at least 1,000 times faster than those of conventional CCDs. Our technique maps a two-dimensional (2D) image into a serial time-domain data stream and simultaneously amplifies the image in the optical domain. We capture an entire 2D image using a single-pixel photodetector and achieve a net image amplification of 25 dB (a factor of 316). This overcomes the compromise between sensitivity and frame rate without resorting to cooling and high-intensity illumination. As a proof of concept, we perform continuous real-time imaging at a frame speed of 163 ns (a frame rate of 6.1 MHz) and a shutter speed of 440 ps. We also demonstrate real-time imaging of microfluidic flow and phase-explosion effects that occur during laser ablation.
Collapse
Affiliation(s)
- K Goda
- Department of Electrical Engineering, University of California, Los Angeles, California 90095, USA.
| | | | | |
Collapse
|
26
|
Affiliation(s)
- Stefan Balaz
- Department of Pharmaceutical Sciences, College of Pharmacy, North Dakota State University, Fargo, North Dakota 58105, USA.
| |
Collapse
|
27
|
Kumon RE, Aehle M, Sabens D, Parikh P, Han YW, Kourennyi D, Deng CX. Spatiotemporal effects of sonoporation measured by real-time calcium imaging. ULTRASOUND IN MEDICINE & BIOLOGY 2009; 35:494-506. [PMID: 19010589 PMCID: PMC2670760 DOI: 10.1016/j.ultrasmedbio.2008.09.003] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2008] [Revised: 08/19/2008] [Accepted: 09/03/2008] [Indexed: 05/05/2023]
Abstract
To investigate the effects of sonoporation, spatiotemporal evolution of ultrasound-induced changes in intracellular calcium ion concentration ([Ca(2+)](i)) was determined using real-time fura-2AM fluorescence imaging. Monolayers of Chinese hamster ovary (CHO) cells were exposed to a 1-MHz ultrasound tone burst (0.2 s, 0.45 MPa) in the presence of Optison microbubbles. At extracellular [Ca(2+)](o) of 0.9 mM, ultrasound application generated both nonoscillating and oscillating (periods 12 to 30 s) transients (changes of [Ca(2+)](i) in time) with durations of 100-180 s. Immediate [Ca(2+)](i) transients after ultrasound application were induced by ultrasound-mediated microbubble-cell interactions. In some cases, the immediately affected cells did not return to pre-ultrasound equilibrium [Ca(2+)](i) levels, thereby indicating irreversible membrane damage. Spatial evolution of [Ca(2+)](i) in different cells formed a calcium wave that was observed to propagate outward from the immediately affected cells at 7-20 microm/s over a distance >200 microm, causing delayed transients in cells to occur sometimes 60 s or more after ultrasound application. In calcium-free solution, ultrasound-affected cells did not recover, consistent with the requirement of extracellular Ca(2+) for cell membrane recovery subsequent to sonoporation. In summary, ultrasound application in the presence of Optison microbubbles can generate transient [Ca(2+)](i) changes and oscillations at a focal site and in surrounding cells via calcium waves that last longer than the ultrasound duration and spread beyond the focal site. These results demonstrate the complexity of downstream effects of sonoporation beyond the initial pore formation and subsequent diffusion-related transport through the cellular membrane.
Collapse
Affiliation(s)
- R. E. Kumon
- Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Blvd., Ann Arbor, Michigan 48109–2099, USA
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
| | - M. Aehle
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
| | - D. Sabens
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
| | - P. Parikh
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
| | - Y. W. Han
- School of Dental Medicine, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–4905, USA
| | - D. Kourennyi
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
| | - C. X. Deng
- Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Blvd., Ann Arbor, Michigan 48109–2099, USA
- Department of Biomedical Engineering, Case Western Reserve University, 10900 Euclid Ave., Cleveland, Ohio 44106–7207, USA
- Corresponding author: Cheri X. Deng, Department of Biomedical Engineering, University of Michigan, 2200 Bonisteel Blvd, Ann Arbor, MI 48109–2099, USA. Tel: +1 734-936-2855; Fax: +1734-936-1905. E-mail address: (C. X. Deng)
| |
Collapse
|
28
|
Slaby O, Lebiedz D. Oscillatory NAD(P)H waves and calcium oscillations in neutrophils? A modeling study of feasibility. Biophys J 2009; 96:417-28. [PMID: 19167293 DOI: 10.1016/j.bpj.2008.09.044] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2008] [Accepted: 09/29/2008] [Indexed: 11/17/2022] Open
Abstract
The group of Howard Petty has claimed exotic metabolic wave phenomena together with mutually phase-coupled NAD(P)H- and calcium-oscillations in human neutrophils. At least parts of these phenomena are highly doubtful due to extensive failure of reproducibility by several other groups and hints that unreliable data from the Petty lab are involved in publications concerning circular calcium waves. The aim of our theoretical spatiotemporal modeling approach is to propose a possible and plausible biochemical mechanism which would, in principle, be able to explain metabolic oscillations and wave phenomena in neutrophils. Our modeling suggests the possibility of a calcium-controlled glucose influx as a driving force of metabolic oscillations and a potential role of polarized cell geometry and differential enzyme distribution for various NAD(P)H wave phenomena. The modeling results are supposed to stimulate further controversial discussions of such phenomena and potential mechanisms and experimental efforts to finally clarify the existence and biochemical basis of any kind of temporal and spatiotemporal patterns of calcium signals and metabolic dynamics in human neutrophils. Independent of Petty's observations, they present a general feasibility study of such phenomena in cells.
Collapse
|
29
|
Abstract
Phagocytic leukocytes consume oxygen and generate reactive oxygen species in response to appropriate stimuli. The phagocyte NADPH oxidase, a multiprotein complex, existing in the dissociated state in resting cells becomes assembled into the functional oxidase complex upon stimulation and then generates superoxide anions. Biochemical aspects of the NADPH oxidase are briefly discussed in this review; however, the major focus relates to the contributions of various modes of microscopy to our understanding of the NADPH oxidase and the cell biology of phagocytic leukocytes.
Collapse
|
30
|
Siehr J, Mommer MS, Slaby O, Lebiedz D. Targeting characteristic wave properties in reaction-diffusion systems by optimization of external forcing. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 76:056211. [PMID: 18233743 DOI: 10.1103/physreve.76.056211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2007] [Revised: 09/04/2007] [Indexed: 05/25/2023]
Abstract
We consider the targeted manipulation of reaction-diffusion waves by optimization of an external forcing parameter. As an example, we present numerical results for the FitzHugh-Nagumo system exploiting model-based optimization capable of targeting characteristic wave properties such as wavelength, shape, and propagation speed by spatiotemporally controlling electric current. The conceptual basis of our approach is optimal control of periodic orbits in a wave-variable coordinate system. The results are transferred back to the partial differential equation context and validated in numerical simulations. The whole procedure is applicable to any reaction-diffusion model.
Collapse
Affiliation(s)
- Jochen Siehr
- Interdisciplinary Center for Scientific Computing, Im Neuenheimer Feld 368, 69120 Heidelberg, Germany
| | | | | | | |
Collapse
|
31
|
Chami M, Oulès B, Paterlini-Bréchot P. Cytobiological consequences of calcium-signaling alterations induced by human viral proteins. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2006; 1763:1344-62. [PMID: 17059849 DOI: 10.1016/j.bbamcr.2006.09.025] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2006] [Revised: 09/13/2006] [Accepted: 09/15/2006] [Indexed: 01/25/2023]
Abstract
Since calcium-signaling regulates specific and fundamental cellular processes, it represents the ideal target of viral proteins, in order for the virus to control cellular functions and favour its persistence, multiplication and spread. A detailed analysis of reports focused on the impact of viral proteins on calcium-signaling has shown that virus-related elevations of cytosolic calcium levels allow increased viral protein expression (HIV-1, HSV-1/2), viral replication (HBx, enterovirus 2B, HTLV-1 p12(I), HHV-8, EBV), viral maturation (rotavirus), viral release (enterovirus 2B) and cell immortalization (EBV). Interestingly, virus-induced decreased cytosolic calcium levels have been found to be associated with inhibition of immune cells functions (HIV-1 Tat, HHV-8 K15, EBV LMP2A). Finally, several viral proteins are able to modulate intracellular calcium-signaling to control cell viability (HIV-1 Tat, HTLV-1 p13(II), HCV core, HBx, enterovirus 2B, HHV-8 K7). These data point out calcium-signaling as a key cellular target for viral infection and should stimulate further studies exploring new calcium-related therapeutic strategies.
Collapse
|