1
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Wang L, Marcus RK. Evaluation of protein separations based on hydrophobic interaction chromatography using polyethylene terephthalate capillary-channeled polymer (C-CP) fiber phases. J Chromatogr A 2019; 1585:161-171. [DOI: 10.1016/j.chroma.2018.11.068] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 11/16/2018] [Accepted: 11/24/2018] [Indexed: 11/28/2022]
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2
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Tyteca E, De Vos J, Tassi M, Cook K, Liu X, Kaal E, Eeltink S. Generic approach to the method development of intact protein separations using hydrophobic interaction chromatography. J Sep Sci 2017; 41:1017-1024. [PMID: 29178450 DOI: 10.1002/jssc.201701202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 11/21/2017] [Accepted: 11/21/2017] [Indexed: 11/05/2022]
Abstract
We describe a liquid chromatography method development approach for the separation of intact proteins using hydrophobic interaction chromatography. First, protein retention was determined as function of the salt concentration by isocratic measurements and modeled using linear regression. The error between measured and predicted retention factors was studied while varying gradient time (between 15 and 120 min) and gradient starting conditions, and ranged between 2 and 15%. To reduce the time needed to develop optimized gradient methods for hydrophobic interaction chromatography separations, retention-time estimations were also assessed based on two gradient scouting runs, resulting in significantly improved retention-time predictions (average error < 2.5%) when varying gradient time. When starting the scouting gradient at lower salt concentrations (stronger eluent), retention time prediction became inaccurate in contrast to predictions based on isocratic runs. Application of three scouting runs and a nonlinear model, incorporating the effects of gradient duration and mobile-phase composition at the start of the gradient, provides accurate results (improved fitting compared to the linear solvent-strength model) with an average error of 1.0% and maximum deviation of -8.3%. Finally, gradient scouting runs and retention-time modeling have been applied for the optimization of a critical-pair protein isoform separation encountered in a biotechnological sample.
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Affiliation(s)
- Eva Tyteca
- Vrije Universiteit Brussel (VUB), Department of Chemical Engineering, Brussels, Belgium.,University of Liège, Gembloux Agro-BioTech, Department of Agronomy, Bio-engineering and Chemistry, Analytical Chemistry, Gembloux, Belgium
| | - Jelle De Vos
- Vrije Universiteit Brussel (VUB), Department of Chemical Engineering, Brussels, Belgium
| | - Marco Tassi
- Vrije Universiteit Brussel (VUB), Department of Chemical Engineering, Brussels, Belgium
| | - Ken Cook
- Thermo Fisher Scientific, Hemel Hempstead, United Kingdom
| | | | - Erwin Kaal
- DSM Biotechnology Center, part of DSM Food Specialties B.V., Delft, The Netherlands
| | - Sebastiaan Eeltink
- Vrije Universiteit Brussel (VUB), Department of Chemical Engineering, Brussels, Belgium
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3
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Muca R, Marek W, Żurawski M, Piątkowski W, Antos D. Effect of mass overloading on binding and elution of unstable proteins in hydrophobic interaction chromatography. J Chromatogr A 2017; 1492:79-88. [DOI: 10.1016/j.chroma.2017.02.073] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Revised: 02/27/2017] [Accepted: 02/28/2017] [Indexed: 11/28/2022]
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4
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Abstract
Chromatography is an important biophysical technique that enables the separation, identification, and purification of the components of a mixture for qualitative and quantitative analysis. Proteins can be purified based on characteristics such as size and shape, total charge, hydrophobic groups present on the surface, and binding capacity with the stationary phase. Four separation techniques based on molecular characteristics and interaction type use mechanisms of ion exchange, surface adsorption, partition, and size exclusion. Other chromatography techniques are based on the stationary bed, including column, thin layer, and paper chromatography. Column chromatography is one of the most common methods of protein purification.
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Affiliation(s)
- Ozlem Coskun
- Department of Biophysics, Canakkale Onsekiz Mart University, Canakkale, Turkey
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5
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Baca M, De Vos J, Bruylants G, Bartik K, Liu X, Cook K, Eeltink S. A comprehensive study to protein retention in hydrophobic interaction chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1032:182-188. [DOI: 10.1016/j.jchromb.2016.05.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Revised: 05/06/2016] [Accepted: 05/09/2016] [Indexed: 11/27/2022]
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6
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Water on hydrophobic surfaces: Mechanistic modeling of hydrophobic interaction chromatography. J Chromatogr A 2016; 1465:71-8. [PMID: 27575919 DOI: 10.1016/j.chroma.2016.07.085] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Revised: 07/27/2016] [Accepted: 07/29/2016] [Indexed: 11/22/2022]
Abstract
Mechanistic models are successfully used for protein purification process development as shown for ion-exchange column chromatography (IEX). Modeling and simulation of hydrophobic interaction chromatography (HIC) in the column mode has been seldom reported. As a combination of these two techniques is often encountered in biopharmaceutical purification steps, accurate modeling of protein adsorption in HIC is a core issue for applying holistic model-based process development, especially in the light of the Quality by Design (QbD) approach. In this work, a new mechanistic isotherm model for HIC is derived by consideration of an equilibrium between well-ordered water molecules and bulk-like ordered water molecules on the hydrophobic surfaces of protein and ligand. The model's capability of describing column chromatography experiments is demonstrated with glucose oxidase, bovine serum albumin (BSA), and lysozyme on Capto™ Phenyl (high sub) as model system. After model calibration from chromatograms of bind-and-elute experiments, results were validated with batch isotherms and prediction of further gradient elution chromatograms.
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7
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Hanke AT, Klijn ME, Verhaert PDEM, van der Wielen LAM, Ottens M, Eppink MHM, van de Sandt EJAX. Prediction of protein retention times in hydrophobic interaction chromatography by robust statistical characterization of their atomic-level surface properties. Biotechnol Prog 2016; 32:372-81. [PMID: 26698169 DOI: 10.1002/btpr.2219] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Revised: 11/09/2015] [Indexed: 11/11/2022]
Abstract
The correlation between the dimensionless retention times (DRT) of proteins in hydrophobic interaction chromatography (HIC) and their surface properties were investigated. A ternary atomic-level hydrophobicity scale was used to calculate the distribution of local average hydrophobicity across the proteins surfaces. These distributions were characterized by robust descriptive statistics to reduce their sensitivity to small changes in the three-dimensional structure. The applicability of these statistics for the prediction of protein retention behaviour was looked into. A linear combination of robust statistics describing the central tendency, heterogeneity and frequency of highly hydrophobic clusters was found to have a good predictive capability (R2 = 0.78), when combined a factor to account for protein size differences. The achieved error of prediction was 35% lower than for a similar model based on a description of the protein surface on an amino acid level. This indicates that a robust and mathematically simple model based on an atomic description of the protein surface can be used for the prediction of the retention behaviour of conformationally stable globular proteins with a well determined 3D structure in HIC. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:372-381, 2016.
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Affiliation(s)
- Alexander T Hanke
- Dept. of Biotechnology, TU Delft, Julianalaan 67, Delft, 2628 BC, The Netherlands
| | - Marieke E Klijn
- Dept. of Biotechnology, TU Delft, Julianalaan 67, Delft, 2628 BC, The Netherlands
| | - Peter D E M Verhaert
- Dept. of Biotechnology, TU Delft, Julianalaan 67, Delft, 2628 BC, The Netherlands
| | | | - Marcel Ottens
- Dept. of Biotechnology, TU Delft, Julianalaan 67, Delft, 2628 BC, The Netherlands
| | - Michel H M Eppink
- Synthon Biopharmaceuticals B.V, Microweg 22, GN, Nijmegen, 6503, The Netherlands
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8
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Soares RRG, Azevedo AM, Van Alstine JM, Aires-Barros MR. Partitioning in aqueous two-phase systems: Analysis of strengths, weaknesses, opportunities and threats. Biotechnol J 2015. [PMID: 26213222 DOI: 10.1002/biot.201400532] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
For half a century aqueous two-phase systems (ATPSs) have been applied for the extraction and purification of biomolecules. In spite of their simplicity, selectivity, and relatively low cost they have not been significantly employed for industrial scale bioprocessing. Recently their ability to be readily scaled and interface easily in single-use, flexible biomanufacturing has led to industrial re-evaluation of ATPSs. The purpose of this review is to perform a SWOT analysis that includes a discussion of: (i) strengths of ATPS partitioning as an effective and simple platform for biomolecule purification; (ii) weaknesses of ATPS partitioning in regard to intrinsic problems and possible solutions; (iii) opportunities related to biotechnological challenges that ATPS partitioning may solve; and (iv) threats related to alternative techniques that may compete with ATPS in performance, economic benefits, scale up and reliability. This approach provides insight into the current status of ATPS as a bioprocessing technique and it can be concluded that most of the perceived weakness towards industrial implementation have now been largely overcome, thus paving the way for opportunities in fermentation feed clarification, integration in multi-stage operations and in single-step purification processes.
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Affiliation(s)
- Ruben R G Soares
- IBB - Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - Ana M Azevedo
- IBB - Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal
| | - James M Van Alstine
- Division of Industrial Biotechnology, School of Biotechnology, Royal Institute of Technology, Stockholm, Sweden.,JMVA Biotech, Stockholm, Sweden
| | - M Raquel Aires-Barros
- IBB - Institute for Bioengineering and Biosciences, Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal.
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9
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Chai DS, Sun Y, Wang XN, Shi QH. Improved purification of immunoglobulin G from plasma by mixed-mode chromatography. J Sep Sci 2014; 37:3461-72. [DOI: 10.1002/jssc.201400554] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Revised: 09/03/2014] [Accepted: 09/08/2014] [Indexed: 11/11/2022]
Affiliation(s)
- Dong-Sheng Chai
- Department of Biochemical Engineering; Key Laboratory of Systems Bioengineering; School of Chemical Engineering and Technology; Tianjin University; Tianjin China
| | - Yan Sun
- Department of Biochemical Engineering; Key Laboratory of Systems Bioengineering; School of Chemical Engineering and Technology; Tianjin University; Tianjin China
- Collaborative Innovation Centre of Chemical Science and Engineering; Tianjin China
| | - Xiao-Ning Wang
- Vaccines Research Department 3; Beijing Tiantan Biological Products Co. Ltd; Beijing China
| | - Qing-Hong Shi
- Department of Biochemical Engineering; Key Laboratory of Systems Bioengineering; School of Chemical Engineering and Technology; Tianjin University; Tianjin China
- Collaborative Innovation Centre of Chemical Science and Engineering; Tianjin China
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10
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Uygun M, Şenay RH, Avcıbaşı N, Akgöl S. Poly(HEMA-co-NBMI) Monolithic Cryogel Columns for IgG Adsorption. Appl Biochem Biotechnol 2013; 172:1574-84. [DOI: 10.1007/s12010-013-0624-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2013] [Accepted: 10/30/2013] [Indexed: 10/26/2022]
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11
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Ibarra-Herrera CC, Reddy-Vennapusa R, Rito-Palomares M, Fernández-Lahore M. Proteome wide evaluation of the separation ability of hydrophobic interaction chromatography by fluorescent dye binding analysis. J Mol Recognit 2013; 26:618-26. [DOI: 10.1002/jmr.2302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2013] [Revised: 07/25/2013] [Accepted: 07/30/2013] [Indexed: 11/11/2022]
Affiliation(s)
- Celeste C. Ibarra-Herrera
- Downstream Bioprocessing Laboratory, School of Engineering and Science; Jacobs University; Campus Ring 1 Bremen D-28759 Germany
- Centro de Biotecnología-FEMSA, Departamento de Biotecnología e Ingeniería de Alimentos; Tecnológico de Monterrey; Ave. Eugenio Garza Sada 2501 Sur Monterrey 64849 Mexico
| | - Rami Reddy-Vennapusa
- Manufacturing Technologies Department; Shantha Biotechnics (A Sanofi Company); Fateh Maidan Road Hyderabad 50140 India
| | - Marco Rito-Palomares
- Centro de Biotecnología-FEMSA, Departamento de Biotecnología e Ingeniería de Alimentos; Tecnológico de Monterrey; Ave. Eugenio Garza Sada 2501 Sur Monterrey 64849 Mexico
| | - Marcelo Fernández-Lahore
- Downstream Bioprocessing Laboratory, School of Engineering and Science; Jacobs University; Campus Ring 1 Bremen D-28759 Germany
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12
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Mazur K, Heisler IA, Meech SR. Water Dynamics at Protein Interfaces: Ultrafast Optical Kerr Effect Study. J Phys Chem A 2011; 116:2678-85. [DOI: 10.1021/jp2074539] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Kamila Mazur
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Ismael A. Heisler
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Stephen R. Meech
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
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13
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Nfor BK, Hylkema NN, Wiedhaup KR, Verhaert PDEM, van der Wielen LAM, Ottens M. High-throughput protein precipitation and hydrophobic interaction chromatography: salt effects and thermodynamic interrelation. J Chromatogr A 2011; 1218:8958-73. [PMID: 21868020 DOI: 10.1016/j.chroma.2011.08.016] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2011] [Revised: 05/01/2011] [Accepted: 08/07/2011] [Indexed: 11/29/2022]
Abstract
Salt-induced protein precipitation and hydrophobic interaction chromatography (HIC) are two widely used methods for protein purification. In this study, salt effects in protein precipitation and HIC were investigated for a broad combination of proteins, salts and HIC resins. Interrelation between the critical thermodynamic salting out parameters in both techniques was equally investigated. Protein precipitation data were obtained by a high-throughput technique employing 96-well microtitre plates and robotic liquid handling technology. For the same protein-salt combinations, isocratic HIC experiments were performed using two or three different commercially available stationary phases-Phenyl Sepharose low sub, Butyl Sepharose and Resource Phenyl. In general, similar salt effects and deviations from the lyotropic series were observed in both separation methods, for example, the reverse Hofmeister effect reported for lysozyme below its isoelectric point and at low salt concentrations. The salting out constant could be expressed in terms of the preferential interaction parameter in protein precipitation, showing that the former is, in effect, the net result of preferential interaction of a protein with water molecules and salt ions in its vicinity. However, no general quantitative interrelation was found between salting out parameters or the number of released water molecules in protein precipitation and HIC. In other words, protein solubility and HIC retention factor could not be quantitatively interrelated, although for some proteins, regular trends were observed across the different resins and salt types.
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Affiliation(s)
- Beckley K Nfor
- Department of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC, Delft, The Netherlands
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14
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15
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Dubiel EA, Martin Y, Vermette P. Bridging the Gap Between Physicochemistry and Interpretation Prevalent in Cell−Surface Interactions. Chem Rev 2011; 111:2900-36. [DOI: 10.1021/cr9002598] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Evan A. Dubiel
- Laboratoire de bio-ingénierie et de biophysique de l’Université de Sherbrooke, Department of Chemical and Biotechnological Engineering, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, Canada J1K 2R1
- Research Centre on Aging, Institut universitaire de gériatrie de Sherbrooke, 1036 rue Belvédère Sud, Sherbrooke, Québec, Canada J1H 4C4
| | - Yves Martin
- Laboratoire de bio-ingénierie et de biophysique de l’Université de Sherbrooke, Department of Chemical and Biotechnological Engineering, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, Canada J1K 2R1
- Research Centre on Aging, Institut universitaire de gériatrie de Sherbrooke, 1036 rue Belvédère Sud, Sherbrooke, Québec, Canada J1H 4C4
| | - Patrick Vermette
- Laboratoire de bio-ingénierie et de biophysique de l’Université de Sherbrooke, Department of Chemical and Biotechnological Engineering, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, Canada J1K 2R1
- Research Centre on Aging, Institut universitaire de gériatrie de Sherbrooke, 1036 rue Belvédère Sud, Sherbrooke, Québec, Canada J1H 4C4
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16
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Avcibaşi N, Uygun M, Çorman ME, Akgöl S, Denizli A. Application of Supermacroporous Monolithic Hydrophobic Cryogel in Capturing of Albumin. Appl Biochem Biotechnol 2010; 162:2232-43. [DOI: 10.1007/s12010-010-8997-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2010] [Accepted: 05/19/2010] [Indexed: 10/19/2022]
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17
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Purification and characterization of two extracellular endochitinases from Massilia timonae. Carbohydr Res 2010; 345:402-7. [DOI: 10.1016/j.carres.2009.11.015] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2009] [Revised: 11/08/2009] [Accepted: 11/10/2009] [Indexed: 10/20/2022]
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18
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Lysozyme retention on hydrophobic interaction chromatography predicts resin performance at large scale. Biotechnol Appl Biochem 2009; 54:157-62. [DOI: 10.1042/ba20090125] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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19
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Maddula SR, Kharkar M, Manudhane K, Kale S, Bhori A, Lali A, Dubey PK, Sarma KRJ, Bhattacharya A, Bandichhor R. Preparative Chromatography Technique in the Removal of Isostructural Genotoxic Impurity in Rizatriptan: Use of Physicochemical Descriptors of Solute and Adsorbent. Org Process Res Dev 2009. [DOI: 10.1021/op9000093] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Srinivasula Reddy Maddula
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Manoj Kharkar
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Kushal Manudhane
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Sandeep Kale
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Abijar Bhori
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Arvind Lali
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - P. K. Dubey
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - K. R. Janardana Sarma
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Apurba Bhattacharya
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
| | - Rakeshwar Bandichhor
- Center of Excellence, Research and Development, Integrated Product Development, Dr. Reddy’s Laboratories Ltd., Survey Nos. 42, 45, 46, and 54 Bachupally, Qutubullapur, Ranga Reddy District 500072, Andhra Pradesh, India, Bioprocessing Lab, Chemical Engineering Department, U. I. C. T., Mumbai - 400 019, India, and College of Engineering, J. N. T. U., Hyderabad - 500072 A.P., India
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Cisneros-Ruiz M, Mayolo-Deloisa K, Przybycien TM, Rito-Palomares M. Separation of PEGylated from unmodified ribonuclease A using sepharose media. Sep Purif Technol 2009. [DOI: 10.1016/j.seppur.2008.10.038] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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21
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Vennapusa RR, Tari C, Cabrera R, Fernandez-Lahore M. Surface energetics to assess biomass attachment onto hydrophobic interaction adsorbents in expanded beds. Biochem Eng J 2009. [DOI: 10.1016/j.bej.2008.08.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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22
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Methods of calculating protein hydrophobicity and their application in developing correlations to predict hydrophobic interaction chromatography retention. J Chromatogr A 2008; 1216:1838-44. [PMID: 19100553 DOI: 10.1016/j.chroma.2008.11.089] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2008] [Revised: 11/25/2008] [Accepted: 11/27/2008] [Indexed: 11/23/2022]
Abstract
Hydrophobic interaction chromatography (HIC) is a key technique for protein separation and purification. Different methodologies to estimate the hydrophobicity of a protein are reviewed, which have been related to the chromatographic behavior of proteins in HIC. These methodologies consider either knowledge of the three-dimensional structure or the amino acid composition of proteins. Despite some restrictions; they have proven to be useful in predicting protein retention time in HIC.
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Becker K, Grey M, Bülow L. Probing protein surface accessibility of amino acid substitutions using hydrophobic interaction chromatography. J Chromatogr A 2008; 1215:152-5. [PMID: 19022452 DOI: 10.1016/j.chroma.2008.11.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2008] [Revised: 10/31/2008] [Accepted: 11/03/2008] [Indexed: 11/25/2022]
Abstract
Hydrophobic interaction chromatography (HIC) has been used to determine the influence of amino acid substitutions on protein retention and thereby their accessibility on the protein surface. The retentions of mutants of green fluorescent protein (GFPuv) and human hemoglobin (Hb) were studied on multimodal HIC media and compared to the hydrophobicities from known hydrophobicity scales with respect to the accessible surface area. For GFPuv, the theoretical and experimental results of three hydrophobicity scales correlated well (R(2)>0.85), which clearly indicate that the results can be used for protein retention prediction as well as probing surface properties of protein variants.
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Affiliation(s)
- Kristian Becker
- Department of Pure and Applied Biochemistry, Center for Chemistry and Chemical Engineering, Lund University, P.O. Box 124, SE-211 00 Lund, Sweden
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Valdés R, Álvarez T, Tamayo A, Fernandez EG, Montero J, Geada D, Ferro W, Medina Y, Guevara Y, Padilla S, Cecilia D, Dorta L, González M, Sosa R, González T. New Mab CB.Hep-1 Purification Process Eliminates the Need for Pre-Chromatographic Purification. Stability Demonstrated Over 100 Purification Cycles. Chromatographia 2008. [DOI: 10.1365/s10337-008-0607-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Savard JM, Schneider JW. Sequence-specific purification of DNA oligomers in hydrophobic interaction chromatography using peptide nucleic acid amphiphiles: extended dynamic range. Biotechnol Bioeng 2007; 97:367-76. [PMID: 17089392 PMCID: PMC4493883 DOI: 10.1002/bit.21242] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
We present improvements on a previously reported method (Vernille JP, Schneider JW. 2004. Biotechnol Prog 20(6):1776-1782) to purify DNA oligomers by attachment of peptide nucleic acid amphiphiles (PNAA) to particular sequences on the oligomers, followed by their separation from unbound oligomers using hydrophobic interaction chromatography (HIC). Use of alkyl-modified HIC media (butyl and octyl sepharose) over phenyl-modified media (phenyl sepharose) reduced the elution time of unbound DNA while not affecting the elution time of the PNAA/DNA complex. Modifying the alkane tail length for PNAA from C(12) to C(18) increased slightly the retention of PNAA/DNA duplexes. By combining these two refinements, we show that sequence-specific purifications of DNA oligomers 60 bases in length or more can be achieved with high resolution, even when the PNAA alkane is attached to the center of the target strand. The insensitivity of the PNAA/DNA duplex binding to choice of HIC media appears to be due to a surface-induced aggregation phenomenon that does not occur in the case of untagged DNA. We also report on the use of batch HIC as an adequate predictor of elution profiles in linear gradient HIC, and its potential to considerably reduce purification times by applying step gradients.
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Affiliation(s)
- Jeffrey M. Savard
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213-3890; telephone: 412-268-4394; fax: 412-268-7139
| | - James W. Schneider
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213-3890; telephone: 412-268-4394; fax: 412-268-7139
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Lienqueo ME, Mahn A, Salgado JC, Asenjo JA. Current insights on protein behaviour in hydrophobic interaction chromatography. J Chromatogr B Analyt Technol Biomed Life Sci 2007; 849:53-68. [PMID: 17141587 DOI: 10.1016/j.jchromb.2006.11.019] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2006] [Revised: 11/09/2006] [Accepted: 11/13/2006] [Indexed: 11/15/2022]
Abstract
This paper gives a summary of different aspects for predicting protein behaviour in hydrophobic interaction chromatography (HIC). First, a brief description of HIC, hydrophobic interactions, amino acid and protein hydrophobicity is presented. After that, several factors affecting protein chromatographic behaviour in HIC are described. Finally, different approaches for predicting protein retention time in HIC are shown. Using all this information, it could be possible to carry out computational experiments by varying the different operating conditions for the purification of a target protein; and then selecting the best conditions in silico and designing a rational protein purification process involving an HIC step.
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Affiliation(s)
- M Elena Lienqueo
- Centre for Biochemical Engineering and Biotechnology, Department of Chemical and Biotechnology Engineering, University of Chile, Beauchef 861, Santiago, Chile.
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Haimer E, Tscheliessnig A, Hahn R, Jungbauer A. Hydrophobic interaction chromatography of proteins IV. J Chromatogr A 2007; 1139:84-94. [PMID: 17116304 DOI: 10.1016/j.chroma.2006.11.003] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2006] [Revised: 10/24/2006] [Accepted: 11/01/2006] [Indexed: 11/19/2022]
Abstract
Adsorption of proteins on surfaces of hydrophobic interaction chromatography media is at least a two-stage process. Application of pure protein pulses (bovine serum albumin and beta-lactoglobulin) to hydrophobic interaction chromatography media yielded two chromatographic peaks at low salt concentrations. At these salt concentrations, the adsorption process is affected by a second reaction, which can be interpreted as protein spreading or partial unfolding of the protein. The kinetic constants of the spreading reaction were derived from pulse response experiments at different residence times and varying concentrations by applying a modified adsorption model considering conformational changes. The obtained parameters were used to calculate uptake and breakthrough curves for spreading proteins. Although these parameters were determined at low saturation of the column, predictions of overloaded situations could match the experimental runs satisfactorily. Our findings suggest that proteins which are sensitive to conformational changes should be loaded at high salt concentrations in order to accelerate the adsorption reaction and to obtain steeper breakthrough curves.
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Affiliation(s)
- Emmerich Haimer
- Department of Biotechnology, University of Natural Resources and Applied Life Sciences, Muthgasse 18, A-1190 Vienna, Austria
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Lienqueo ME, Mahn A, Navarro G, Salgado JC, Perez-Acle T, Rapaport I, Asenjo JA. New approaches for predicting protein retention time in hydrophobic interaction chromatography. J Mol Recognit 2006; 19:260-9. [PMID: 16752432 DOI: 10.1002/jmr.776] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Hydrophobic interaction chromatography (HIC) is an important technique for the purification of proteins. In this paper, we review three different approaches for predicting protein retention time in HIC, based either on a protein's structure or on its amino-acidic composition, and we have extended one of these approaches. The first approach correlates the protein retention time in HIC with the protein average surface hydrophobicity. This methodology is based on the protein three-dimensional structure data and considers the hydrophobic contribution of the exposed amino acid residues as a weighted average. The second approach, which we have extended, is based on the high correlation level between the average surface hydrophobicity of a protein's hydrophobic interacting zone and its retention time in HIC. Finally, a third approach carries out a prediction of the average surface hydrophobicity of a protein, using only its amino-acidic composition, without knowing its three-dimensional structure. These models would make it possible to test different operating conditions for the purification of a target protein by computer simulations, and thus make it easier to select the optimal conditions, contributing to the rational design and optimization of the process.
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Affiliation(s)
- M E Lienqueo
- Department of Chemical and Biotechnology Engineering, Centre for Biochemical Engineering and Biotechnology, University of Chile, Beauchef 861, Santiago, Chile.
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