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Wada K, Uebayashi K, Toya Y, Putri SP, Matsuda F, Fukusaki E, C Liao J, Shimizu H. Effects of n-butanol production on metabolism and the photosystem in Synecococcus elongatus PCC 7942 based on metabolic flux and target proteome analyses. J GEN APPL MICROBIOL 2024; 69:185-195. [PMID: 36935115 DOI: 10.2323/jgam.2023.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2023]
Abstract
Although n-butanol (BuOH) is an ideal fuel because of its superior physical properties, it has toxicity to microbes. Previously, a Synechococcus elongatus PCC 7942 derivative strain that produces BuOH from CO2 was developed by introducing six heterologous genes (BUOH-SE strain). To identify the bottleneck in BuOH production, the effects of BuOH production and its toxicity on central metabolism and the photosystem were investigated. Parental (WT) and BUOH-SE strains were cultured under autotrophic conditions. Consistent with the results of a previous study, BuOH production was observed only in the BUOH-SE strain. Isotopically non-stationary 13C-metabolic flux analysis revealed that the CO2 fixation rate was much larger than the BuOH production rate in the BUOH-SE strain (1.70 vs 0.03 mmol gDCW-1 h-1), implying that the carbon flow for BuOH biosynthesis was less affected by the entire flux distribution. No large difference was observed in the flux of metabolism between the WT and BUOH-SE strains. Contrastingly, in the photosystem, the chlorophyll content and maximum O2 evolution rate per dry cell weight of the BUOH-SE strain were decreased to 81% and 43% of the WT strain, respectively. Target proteome analysis revealed that the amounts of some proteins related to antennae (ApcA, ApcD, ApcE, and CpcC), photosystem II (PsbB, PsbU, and Psb28-2), and cytochrome b6f complex (PetB and PetC) in photosystems decreased in the BUOH-SE strain. The activation of photosynthesis would be a novel approach for further enhancing BuOH production in S. elongatus PCC 7942.
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Affiliation(s)
- Keisuke Wada
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
| | - Kiyoka Uebayashi
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
| | - Yoshihiro Toya
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
| | - Sastia Prama Putri
- Department of Biotechnology, Graduate School of Engineering, Osaka University
| | - Fumio Matsuda
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
| | - Eiichiro Fukusaki
- Department of Biotechnology, Graduate School of Engineering, Osaka University
| | - James C Liao
- Department of Chemical and Biomolocular Engineering, University of California
| | - Hiroshi Shimizu
- Department of Bioinformatic Engineering, Graduate School of Information Science and Technology, Osaka University
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2
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Davis MA, Yu VY, Fu B, Wen M, Koleski EJ, Silverman J, Berdan CA, Nomura DK, Chang MCY. A cellular platform for production of C 4 monomers. Chem Sci 2023; 14:11718-11726. [PMID: 37920356 PMCID: PMC10619544 DOI: 10.1039/d3sc02773b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 09/21/2023] [Indexed: 11/04/2023] Open
Abstract
Living organisms carry out a wide range of remarkable functions, including the synthesis of thousands of simple and complex chemical structures for cellular growth and maintenance. The manipulation of this reaction network has allowed for the genetic engineering of cells for targeted chemical synthesis, but it remains challenging to alter the program underlying their fundamental chemical behavior. By taking advantage of the unique ability of living systems to use evolution to find solutions to complex problems, we have achieved yields of up to ∼95% for three C4 commodity chemicals, n-butanol, 1,3-butanediol, and 4-hydroxy-2-butanone. Genomic sequencing of the evolved strains identified pcnB and rpoBC as two gene loci that are able to alter carbon flow by remodeling the transcriptional landscape of the cell, highlighting the potential of synthetic pathways as a tool to identify metabolic control points.
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Affiliation(s)
- Matthew A Davis
- Department of Molecular & Cellular Biology, University of California Berkeley CA 94720-3200 USA
| | - Vivian Yaci Yu
- Department of Molecular & Cellular Biology, University of California Berkeley CA 94720-3200 USA
| | - Beverly Fu
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
| | - Miao Wen
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
| | - Edward J Koleski
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
| | - Joshua Silverman
- Calysta 1900 Alameda de las Pulgas Suite 200 San Mateo CA 94404 USA
| | - Charles A Berdan
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
| | - Daniel K Nomura
- Department of Molecular & Cellular Biology, University of California Berkeley CA 94720-3200 USA
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
- Department of Nutritional Sciences & Toxicology, University of California Berkeley CA 94720-3104 USA
| | - Michelle C Y Chang
- Department of Molecular & Cellular Biology, University of California Berkeley CA 94720-3200 USA
- Department of Chemistry, University of California Berkeley CA 94720-1460 USA
- Department of Chemical & Biomolecular Engineering, University of California Berkeley CA 94720-1462 USA
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3
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Chalhoub E, Nassar N, Hawly M, Belovich JM. Mathematical modeling of ABE fermentation on glucose substrate with Zn supplementation for enhanced butanol production. Arch Biochem Biophys 2023; 747:109765. [PMID: 37757907 DOI: 10.1016/j.abb.2023.109765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 08/31/2023] [Accepted: 09/21/2023] [Indexed: 09/29/2023]
Abstract
Supplementation or limitation of some micronutrients during acetone-butanol-ethanol (ABE) fermentation has led to improvement in butanol yield and productivity. A mechanistic model of ABE fermentation offers insights in understanding these complex interactions and improving productivity through optimal culture conditions. This study proposes a mechanistic kinetic model of ABE fermentation by two Clostridium Acetobutylicum strains, L7 and ATCC 824 using glucose as sole carbon source without zinc and with various zinc doses. The model incorporates enzyme regulation by zinc on several glycolytic, acidogenesis and solventogenesis enzymes. The model was fitted and validated to experimental data collected from the published literature. The simulated results were in compliance with the experimental data, most importantly indicating higher glucose consumption and butanol productivity when supplemented with zinc compared to the control culture. The average squared correlation factor (R2) between the experimental and the simulated results, without and with zinc, were 0.99 and 0.96 for glucose, and 0.89 and 0.95 for butanol, respectively. A sensitivity analysis performed on the fitted and validated model indicated that the glucose consumption and growth parameters most influenced the model outputs. The developed model can be used as a template for modeling ABE fermentation under different combinations of micronutrients that may offer improved butanol yield and productivity.
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Affiliation(s)
- Elie Chalhoub
- Petroleum Engineering Program, School of Engineering, Lebanese American University, Byblos Campus, Lebanon.
| | - Nathalie Nassar
- Department of Chemical Engineering, University of Balamand, Tripoli, Lebanon
| | - Mhamad Hawly
- Department of Chemical Engineering, University of Balamand, Tripoli, Lebanon
| | - Joanne M Belovich
- Department of Chemical and Biomedical Engineering, Cleveland State University, Cleveland, OH, 44115, USA
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4
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Kumar M, Saini S, Gayen K. Exploring the Influence of pH on the Dynamics of Acetone-Butanol-Ethanol Fermentation. Microorganisms 2023; 11:1610. [PMID: 37375111 DOI: 10.3390/microorganisms11061610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 06/04/2023] [Accepted: 06/14/2023] [Indexed: 06/29/2023] Open
Abstract
Clostridium acetobutylicum is an anaerobic bacterium that is extensively studied for its ability to produce butanol. Over the past two decades, various genetic and metabolic engineering approaches have been used to investigate the physiology and regulation system of the biphasic metabolic pathway in this organism. However, there has been a relatively limited amount of research focused on the fermentation dynamics of C. acetobutylicum. In this study, we developed a pH-based phenomenological model to predict the fermentative production of butanol from glucose using C. acetobutylicum in a batch system. The model describes the relationship between the dynamics of growth and the production of desired metabolites and the extracellular pH of the media. Our model was found to be successful in predicting the fermentation dynamics of C. acetobutylicum, and the simulations were validated using experimental fermentation data. Furthermore, the proposed model has the potential to be extended to represent the dynamics of butanol production in other fermentation systems, such as fed-batch or continuous fermentation using single and multi-sugars.
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Affiliation(s)
- Manish Kumar
- Department of Chemical Engineering, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar 382055, Gujarat, India
| | - Supreet Saini
- Department of Chemical Engineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, Maharashtra, India
| | - Kalyan Gayen
- Department of Chemical Engineering, National Institute of Technology Agartala, Agartala 799053, Tripura, India
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5
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Mechanistic modeling of redox balance effects on the fermentation of eucalyptus wood-derived xylose to acetone-butanol-ethanol. Biochem Eng J 2022. [DOI: 10.1016/j.bej.2022.108738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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6
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Shangdiar S, Lin YC, Ponnusamy VK, Wu TY. Pretreatment of lignocellulosic biomass from sugar bagasse under microwave assisted dilute acid hydrolysis for biobutanol production. BIORESOURCE TECHNOLOGY 2022; 361:127724. [PMID: 35917859 DOI: 10.1016/j.biortech.2022.127724] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Revised: 07/27/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
Abstract
Alternative renewable energy sources are the future potential energy that will benefit the country's overall energy shortage and demand. The efficient biofuel production depends on the viability of the raw material used. The holistic approach of this study is to establish an integrated bioprocess from lignocellulosic material for biofuel synthesis. Sugar bagasse as one of the waste material, can be economically process for sugar extraction used in biofuel production. In this study, the optimum saccharification rate obtained was 43.62% when the biomass was pretreated at microwave temperature of 100 °C for 15 min with 2.5 g catalyst concentration. The results attained shows that hydrolysis time reduces to approximately 40-50% in compare with other traditional heating method. The sample was analyzed by using UV spectrophotometer and HPLC and computed by using Response Surface Method in MINITAB 17, whereas the structural changes of the residue was detected by using ATR-FTIR and ESEM.
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Affiliation(s)
- Sumarlin Shangdiar
- Institute of Environmental Engineering, National Sun Yat-sen University, Kaohsiung 804, Taiwan; Center for Emerging Contaminants Research, National Sun Yat-sen University, Kaohsiung 804, Taiwan
| | - Yuan-Chung Lin
- Institute of Environmental Engineering, National Sun Yat-sen University, Kaohsiung 804, Taiwan; Center for Emerging Contaminants Research, National Sun Yat-sen University, Kaohsiung 804, Taiwan; Department of Public Health, College of Health Science, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan.
| | - Vinoth Kumar Ponnusamy
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung City, Taiwan; Department of Chemistry, National Sun Yat-sen University, Kaohsiung City, Taiwan
| | - Tzi-Yi Wu
- Department of Chemical Engineering and Materials Engineering, National Yunlin University of Science and Technology, Yunlin 64002, Taiwan
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7
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Exploiting the Type I-B CRISPR Genome Editing System in Thermoanaerobacterium aotearoense SCUT27 and Engineering the Strain for Enhanced Ethanol Production. Appl Environ Microbiol 2022; 88:e0075122. [PMID: 35862665 PMCID: PMC9361813 DOI: 10.1128/aem.00751-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
Thermoanaerobacterium aotearoense strain SCUT27 is a potential industrial biofuel-producing strain because of its broad substrate spectrum, especially the ability to co-use glucose and xylose. The bottleneck hindering the development of strain SCUT27 is the lack of selective markers for polygene manipulation in this thermophilic bacterium. In this study, the endogenous type I-B clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated (Cas) system was developed for multiplex genome editing of strain SCUT27. The protospacer-adjacent motif was identified by in silico analysis and verified with orotidine-5'-phosphate decarboxylase (pyrF) or lactate dehydrogenase (ldh) as the editing target. The type I-B CRISPR/Cas system was functional in strain SCUT27 with 58.3% to 100% editing efficiency. A multiplex genome editing method based on thymidine kinase (tdk) as a negative selection marker was developed, and strain SCUT27/Δtdk/Δldh/ΔargR, in which ldh and the arginine repressor (argR) were knocked out successively, was successfully obtained. Strain SCUT27/Δtdk/Δldh/ΔargR exhibited prominent advantages over wild-type SCUT27 in ethanol production, with significantly improved ability to metabolize xylose. IMPORTANCE Thermophilic microbes have attracted great attention as potential candidates for production of biofuels and chemicals from lignocellulose because of their thermal tolerance and wide substrate spectra. The ability to edit multiple genes using the native type I-B CRISPR/Cas system would speed up engineering of Thermoanaerobacterium aotearoense strain SCUT27 for higher ethanol production from lignocellulosic hydrolysates. Here, we produced a mutant strain, T. aotearoense SCUT27/Δtdk/Δldh/ΔargR, using the native CRISPR/Cas system. The engineered strain showed satisfactory performance with improved ethanol productivity from various lignocellulosic hydrolysates. Our data lay the foundations for development of this thermophilic microbe into an excellent ethanol producer using lignocellulosic hydrolysates. The methods described here may also provide a reference to develop multigene editing methods for other microorganisms.
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8
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Microbial pathways for advanced biofuel production. Biochem Soc Trans 2022; 50:987-1001. [PMID: 35411379 PMCID: PMC9162456 DOI: 10.1042/bst20210764] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 03/14/2022] [Accepted: 03/25/2022] [Indexed: 01/16/2023]
Abstract
Decarbonisation of the transport sector is essential to mitigate anthropogenic climate change. Microbial metabolisms are already integral to the production of renewable, sustainable fuels and, building on that foundation, are being re-engineered to generate the advanced biofuels that will maintain mobility of people and goods during the energy transition. This review surveys the range of natural and engineered microbial systems for advanced biofuels production and summarises some of the techno-economic challenges associated with their implementation at industrial scales.
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9
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Ibrahim MF, Shaharuddin NA, Alias NH, Jenol MA, Abd‐Aziz S, Phang L. Biobutanol Production from Oil Palm Biomass. BIOREFINERY OF OIL PRODUCING PLANTS FOR VALUE‐ADDED PRODUCTS 2022:307-324. [DOI: 10.1002/9783527830756.ch16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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10
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Patakova P, Branska B, Vasylkivska M, Jureckova K, Musilova J, Provaznik I, Sedlar K. Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii. Biotechnol Adv 2021; 58:107889. [PMID: 34929313 DOI: 10.1016/j.biotechadv.2021.107889] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 12/10/2021] [Accepted: 12/14/2021] [Indexed: 12/13/2022]
Abstract
Solventogenic clostridia are not a strictly defined group within the genus Clostridium but its representatives share some common features, i.e. they are anaerobic, non-pathogenic, non-toxinogenic and endospore forming bacteria. Their main metabolite is typically 1-butanol but depending on species and culture conditions, they can form other metabolites such as acetone, isopropanol, ethanol, butyric, lactic and acetic acids, and hydrogen. Although these organisms were previously used for the industrial production of solvents, they later fell into disuse, being replaced by more efficient chemical production. A return to a more biological production of solvents therefore requires a thorough understanding of clostridial metabolism. Transcriptome analysis, which reflects the involvement of individual genes in all cellular processes within a population, at any given (sampling) moment, is a valuable tool for gaining a deeper insight into clostridial life. In this review, we describe techniques to study transcription, summarize the evolution of these techniques and compare methods for data processing and visualization of solventogenic clostridia, particularly the species Clostridium acetobutylicum and Clostridium beijerinckii. Individual approaches for evaluating transcriptomic data are compared and their contributions to advancements in the field are assessed. Moreover, utilization of transcriptomic data for reconstruction of computational clostridial metabolic models is considered and particular models are described. Transcriptional changes in glucose transport, central carbon metabolism, the sporulation cycle, butanol and butyrate stress responses, the influence of lignocellulose-derived inhibitors on growth and solvent production, and other respective topics, are addressed and common trends are highlighted.
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Affiliation(s)
- Petra Patakova
- University of Chemistry and Technology Prague, Technicka 5, 16628 Prague 6, Czech Republic.
| | - Barbora Branska
- University of Chemistry and Technology Prague, Technicka 5, 16628 Prague 6, Czech Republic
| | - Maryna Vasylkivska
- University of Chemistry and Technology Prague, Technicka 5, 16628 Prague 6, Czech Republic
| | | | - Jana Musilova
- Brno University of Technology, Technicka 10, 61600 Brno, Czech Republic
| | - Ivo Provaznik
- Brno University of Technology, Technicka 10, 61600 Brno, Czech Republic
| | - Karel Sedlar
- Brno University of Technology, Technicka 10, 61600 Brno, Czech Republic
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11
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Process optimization of acetone-butanol-ethanol fermentation integrated with pervaporation for enhanced butanol production. Biochem Eng J 2021. [DOI: 10.1016/j.bej.2021.108070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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12
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Shin YA, Choi S, Han M. Simultaneous Fermentation of Mixed Sugar by a Newly Isolated Clostridium beijerinckii GSC1. BIOTECHNOL BIOPROC E 2021. [DOI: 10.1007/s12257-020-0183-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Castilla-Archilla J, Papirio S, Lens PN. Two step process for volatile fatty acid production from brewery spent grain: Hydrolysis and direct acidogenic fermentation using anaerobic granular sludge. Process Biochem 2021. [DOI: 10.1016/j.procbio.2020.10.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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14
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Alias NH, Ibrahim MF, Salleh MSM, Jenol MA, Abd-Aziz S, Phang LY. Biobutanol Production from Agricultural Biomass. SUSTAINABLE BIOECONOMY 2021:67-84. [DOI: 10.1007/978-981-15-7321-7_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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15
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Enhanced aerobic conversion of starch to butanol by a symbiotic system of Clostridium acetobutylicum and Nesterenkonia. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2020.107752] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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16
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Qu C, Chen L, Fu H, Wang J. Engineering Thermoanaerobacterium aotearoense SCUT27 with argR knockout for enhanced ethanol production from lignocellulosic hydrolysates. BIORESOURCE TECHNOLOGY 2020; 310:123435. [PMID: 32361198 DOI: 10.1016/j.biortech.2020.123435] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Revised: 04/20/2020] [Accepted: 04/21/2020] [Indexed: 06/11/2023]
Abstract
Although Thermoanaerobacterium aotearoense SCUT27 (SCUT27) could co-utilize glucose and xylose, the presence of glucose still repressed xylose catabolism. Arginine repressors (ArgRs) were involved in several key metabolic pathways and might be the global regulator. In SCUT27, three genes (V518_0585; V518_1870; V518_1864) were annotated as argR and only the deficiency of argR1864 could greatly improve the co-utilization of glucose and xylose, due to the enhanced activity of xylose isomerase, xylulokinase and the higher energy level. The metabolic flux of SCUT27/ΔargR1864 indicated that new carbon distribution had been re-established and the ethanol yield had increased by 82.95%, strains growth and acetate yield improved by ~35.91% without detectable lactate for the poor activity of lactate dehydrogenase. The improved concentration of ATP and NAD(H) in SCUT27/ΔargR1864 provided more energy to respond the stress, which enabled the mutant the better cell viability to utilize lignocellulosic hydrolysates for enhanced ethanol formation.
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Affiliation(s)
- Chunyun Qu
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Lili Chen
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Hongxin Fu
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China
| | - Jufang Wang
- School of Biology and Biological Engineering, South China University of Technology, Guangzhou 510006, China; The State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou 510641, China.
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17
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Jenol MA, Ibrahim MF, Kamal Bahrin E, Abd-Aziz S. Enhanced volatile fatty acid production from sago hampas by Clostridium beijerinckii SR1 for bioelectricity generation using microbial fuel cells. Bioprocess Biosyst Eng 2020; 43:2027-2038. [PMID: 32572569 DOI: 10.1007/s00449-020-02391-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 06/13/2020] [Indexed: 12/23/2022]
Abstract
Sago hampas is a starch-based biomass from sago processing industries consisted of 58% remaining starch. This study has demonstrated the bioconversion of sago hampas to volatile fatty acids (VFAs) by Clostridium beijerinckii SR1 via anaerobic digestion. Higher total VFAs were obtained from sago hampas (5.04 g/L and 0.287 g/g) as compared to commercial starch (5.94 g/L and 0.318 g/g). The physical factors have been investigated for the enhancement of VFAs production using one-factor-at-a-time (OFAT). The optimum condition; 3% substrate concentration, 3 g/L of yeast extract concentration and 2 g/L of ammonium nitrate enhanced the production of VFAs by 52.6%, resulted the total VFAs produced is 7.69 g/L with the VFAs yield of 0.451 g/g. VFAs hydrolysate produced successfully generated 273.4 mV of open voltage circuit and 61.5 mW/m2 of power density in microbial fuel cells. It was suggested that sago hampas provide as an alternative carbon feedstock for bioelectricity generation.
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Affiliation(s)
- Mohd Azwan Jenol
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Mohamad Faizal Ibrahim
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Ezyana Kamal Bahrin
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Suraini Abd-Aziz
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
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18
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Fonseca BC, Bortolucci J, da Silva TM, dos Passos VF, de Gouvêa PF, Dinamarco TM, Reginatto V. Butyric acid as sole product from xylose fermentation by a non-solventogenic Clostridium beijerinckii strain under controlled pH and nutritional conditions. ACTA ACUST UNITED AC 2020. [DOI: 10.1016/j.biteb.2020.100426] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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19
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Wu Y, Wang Z, Xin X, Bai F, Xue C. Synergetic Engineering of Central Carbon, Energy, and Redox Metabolisms for High Butanol Production and Productivity by Clostridium acetobutylicum. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c01187] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Youduo Wu
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China
- Engineering Research Center of Application and Transformation for Synthetic Biology, Dalian University of Technology, Dalian 116024, China
| | - Zhenzhong Wang
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China
| | - Xin Xin
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China
| | - Fengwu Bai
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Chuang Xue
- School of Bioengineering, Dalian University of Technology, Dalian 116024, China
- Engineering Research Center of Application and Transformation for Synthetic Biology, Dalian University of Technology, Dalian 116024, China
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20
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Poe NE, Yu D, Jin Q, Ponder MA, Stewart AC, Ogejo JA, Wang H, Huang H. Compositional variability of food wastes and its effects on acetone-butanol-ethanol fermentation. WASTE MANAGEMENT (NEW YORK, N.Y.) 2020; 107:150-158. [PMID: 32283489 DOI: 10.1016/j.wasman.2020.03.035] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 02/26/2020] [Accepted: 03/28/2020] [Indexed: 06/11/2023]
Abstract
Converting food waste into butanol via acetone, butanol, and ethanol (ABE) fermentation provides the potential to recover energy and value-added chemicals from food waste. However, the high variability of food waste compositions has hindered the consistency and predictability of butanol production, impeding the development of a robust industrial fermentation process. This study characterized the compositional variation of collected food wastes and determined correlations between food waste compositional attributes and butanol yields for a better prediction of food waste fermentation with Clostridium. The total sugar, starch, fiber, crude protein, fat and ash contents (on dry basis) in the food waste samples were in a range of 0.5-53.5%, 0-25.2%, 0.6-26.9%, 5.5-21.5%, 0.1-37.9%, and 1.4-13.7%, respectively. The high variability of food waste composition resulted in a wide range (3.5-11.5 g/L) of butanol concentrations with an average of 8.2 g/L. Pearson's correlation analysis revealed that the butanol concentrations were strongly and positively correlated with equivalent glucose and starch contents in food waste, strongly and negatively correlated with fiber content, and weakly correlated with total sugar, protein, fat, and ash contents. The regression models constructed based on equivalent glucose and fiber contents reasonably predicted the butanol concentration, with the R2 of 0.80. Our study investigated the variability of food waste composition and, for the first time, unveiled relationships between food waste compositional attributes and fermentation yields, contributing to a greater understanding of food waste fermentation, which, in turn, assists in developing new strategies for increased consistency and predictability of food waste fermentation.
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Affiliation(s)
- Nicholas E Poe
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Dajun Yu
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Qing Jin
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Monica A Ponder
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Amanda C Stewart
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Jactone A Ogejo
- Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Hengjian Wang
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Haibo Huang
- Department of Food Science and Technology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
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Li S, Huang L, Ke C, Pang Z, Liu L. Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:39. [PMID: 32165923 PMCID: PMC7060580 DOI: 10.1186/s13068-020-01674-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 02/04/2020] [Indexed: 06/01/2023]
Abstract
The global energy crisis and limited supply of petroleum fuels have rekindled the interest in utilizing a sustainable biomass to produce biofuel. Butanol, an advanced biofuel, is a superior renewable resource as it has a high energy content and is less hygroscopic than other candidates. At present, the biobutanol route, employing acetone-butanol-ethanol (ABE) fermentation in Clostridium species, is not economically competitive due to the high cost of feedstocks, low butanol titer, and product inhibition. Based on an analysis of the physiological characteristics of solventogenic clostridia, current advances that enhance ABE fermentation from strain improvement to product separation were systematically reviewed, focusing on: (1) elucidating the metabolic pathway and regulation mechanism of butanol synthesis; (2) enhancing cellular performance and robustness through metabolic engineering, and (3) optimizing the process of ABE fermentation. Finally, perspectives on engineering and exploiting clostridia as cell factories to efficiently produce various chemicals and materials are also discussed.
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Affiliation(s)
- Shubo Li
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Li Huang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Chengzhu Ke
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004 China
| | - Zongwen Pang
- College of Life Science and Technology, Guangxi University, Nanning, 530005 China
| | - Liming Liu
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, 214122 China
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22
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Ebrahimi E, Amiri H, Asadollahi MA, Shojaosadati SA. Efficient butanol production under aerobic conditions by coculture of
Clostridium acetobutylicum
and
Nesterenkonia
sp. strain F. Biotechnol Bioeng 2019; 117:392-405. [DOI: 10.1002/bit.27221] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 10/23/2019] [Accepted: 11/03/2019] [Indexed: 01/11/2023]
Affiliation(s)
- Ehsan Ebrahimi
- Department of Biotechnology, Faculty of Biological Science and TechnologyUniversity of IsfahanIsfahan Iran
| | - Hamid Amiri
- Department of Biotechnology, Faculty of Biological Science and TechnologyUniversity of IsfahanIsfahan Iran
- Environmental Research Institute, Department of Environmental BiotechnologyUniversity of IsfahanIsfahan Iran
| | - Mohammad A. Asadollahi
- Department of Biotechnology, Faculty of Biological Science and TechnologyUniversity of IsfahanIsfahan Iran
- Environmental Research Institute, Department of Environmental BiotechnologyUniversity of IsfahanIsfahan Iran
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Wu Y, Bai Y, Zhang D, Cheng C, Chen L, Bai F, Xue C. Pleiotropic regulation of a glucose-specific PTS in Clostridium acetobutylicum for high-efficient butanol production from corn stover without detoxification. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:264. [PMID: 31709013 PMCID: PMC6836401 DOI: 10.1186/s13068-019-1604-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 10/29/2019] [Indexed: 05/26/2023]
Abstract
BACKGROUND Corn stover (CS) is evaluated as the most favorable candidate feedstock for butanol production via microbial acetone-butanol-ethanol (ABE) fermentation by Clostridium acetobutylicum. By independent acid pretreatment and enzymatic hydrolysis, fermentable sugars (mainly glucose and xylose) were released, of which glucose was naturally utilized as the most preferred carbon source by C. acetobutylicum. However, the ABE fermentation using corn stover hydrolysate (CSH) without detoxification is typically limited to poor sugars utilization, butanol production and productivity. In the presence of pretreatment-derived inhibitors, the intracellular ATP and NADH, as important factors involved in cell growth, solventogenesis initiation and stress response, are exceedingly challenged owing to disrupted glucose phosphotransferase system (PTS). Therefore, there is a necessity to develop effective engineering approaches to overcome these limitations for high-efficient butanol production from CSH without detoxification. RESULTS PTS-engineered C. acetobutylicum strains were constructed via overexpression and knockout of gene glcG encoding glucose-specific PTS IICBA, which pleiotropically regulated glucose utilization, cell growth, solventogenesis and inhibitors tolerance. The PTSGlcG-overexpressing strain exhibited high fermentation efficiency, wherein butanol production and productivity was 11.1 g/L and 0.31 g/L/h, compared to those of 11.0 g/L and 0.15 g/L/h with the PTSGlcG-deficient strain. During CSH culture without detoxification, the PTSGlcG-overexpressing strain exhibited desirable inhibitors tolerance and solventogenesis with butanol production of 10.0 g/L, increased by 300% and 400% compared to those of 2.5 and 2.0 g/L with the control and PTSGlcG-deficient strains, respectively. As a result of extra glucose and 10 g/L CaCO3 addition into CSH, butanol production and productivity were further maximized to 12.5 g/L and 0.39 g/L/h. These validated improvements on the PTSGlcG-overexpressing strain were ascribed to not only efficient glucose transport but also its cascading effects on intracellular ATP and NADH generation, solventogenesis initiation and inhibitors tolerance at the exponential growth phase. CONCLUSION The PTSGluG regulation could be an effective engineering approach for high-efficient ABE fermentation from lignocellulosic hydrolysates without detoxification or wastewater generation, providing fundamental information for economically sustainable butanol production with high productivity.
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Affiliation(s)
- Youduo Wu
- School of Bioengineering, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Yidi Bai
- School of Bioengineering, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Daojing Zhang
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237 China
| | - Chi Cheng
- School of Bioengineering, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Lijie Chen
- School of Bioengineering, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Fengwu Bai
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240 China
| | - Chuang Xue
- School of Bioengineering, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
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Acetone–butanol–ethanol fermentation from sugarcane bagasse hydrolysates: Utilization of C5 and C6 sugars. ELECTRON J BIOTECHN 2019. [DOI: 10.1016/j.ejbt.2019.10.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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25
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Vivek N, Nair LM, Mohan B, Nair SC, Sindhu R, Pandey A, Shurpali N, Binod P. Bio-butanol production from rice straw – Recent trends, possibilities, and challenges. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biteb.2019.100224] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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26
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Birgen C, Dürre P, Preisig HA, Wentzel A. Butanol production from lignocellulosic biomass: revisiting fermentation performance indicators with exploratory data analysis. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:167. [PMID: 31297155 PMCID: PMC6598312 DOI: 10.1186/s13068-019-1508-6] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 06/19/2019] [Indexed: 05/09/2023]
Abstract
After just more than 100 years of history of industrial acetone-butanol-ethanol (ABE) fermentation, patented by Weizmann in the UK in 1915, butanol is again today considered a promising biofuel alternative based on several advantages compared to the more established biofuels ethanol and methanol. Large-scale fermentative production of butanol, however, still suffers from high substrate cost and low product titers and selectivity. There have been great advances the last decades to tackle these problems. However, understanding the fermentation process variables and their interconnectedness with a holistic view of the current scientific state-of-the-art is lacking to a great extent. To illustrate the benefits of such a comprehensive approach, we have developed a dataset by collecting data from 175 fermentations of lignocellulosic biomass and mixed sugars to produce butanol that reported during the past three decades of scientific literature and performed an exploratory data analysis to map current trends and bottlenecks. This review presents the results of this exploratory data analysis as well as main features of fermentative butanol production from lignocellulosic biomass with a focus on performance indicators as a useful tool to guide further research and development in the field towards more profitable butanol manufacturing for biofuel applications in the future.
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Affiliation(s)
- Cansu Birgen
- Department of Chemical Engineering, NTNU, 7491 Trondheim, Norway
| | - Peter Dürre
- Institute of Microbiology and Biotechnology, Ulm University, 89069 Ulm, Germany
| | - Heinz A. Preisig
- Department of Chemical Engineering, NTNU, 7491 Trondheim, Norway
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Liu H, Zhang J, Yuan J, Jiang X, Jiang L, Zhao G, Huang D, Liu B. Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:101. [PMID: 31057667 PMCID: PMC6486687 DOI: 10.1186/s13068-019-1440-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 04/16/2019] [Indexed: 05/05/2023]
Abstract
BACKGROUND Clostridium acetobutylicum is a model fermentative anaerobe for consolidated bioprocessing of lignocellulose hydrolysates into acetone-butanol-ethanol (ABE). However, the main inhibitors (acids, furans and phenols) ubiquitous in lignocellulose hydrolysates strictly limit the conversion efficiency. Thus, it is essential to understand the underlying mechanisms of lignocellulose hydrolysate inhibitors to identify key industrial bottlenecks that undermine efficient biofuel production. The recently developed omics strategy for intracellular metabolites and protein quantification now allow for the in-depth mapping of strain metabolism and thereby enable the resolution of the underlying mechanisms. RESULTS The toxicity of the main inhibitors in lignocellulose hydrolysates against C. acetobutylicum and ABE production was systematically investigated, and the changes in intracellular metabolism were analyzed by metabolomics and proteomics. The toxicity of the main lignocellulose hydrolysate inhibitors at the same dose was ranked as follows: formic acid > phenol > furfural. Metabolomic analysis based on weighted gene coexpression network analysis (WGCNA) revealed that the three inhibitors triggered the stringent response of C. acetobutylicum. Proteomic analysis based on peptide mass spectrometry (MS) supported the above results and provided more comprehensive conclusions. Under the stress of three inhibitors, the metabolites and key enzymes/proteins involved in glycolysis, reductive tricarboxylic acid (TCA) cycle, acetone-butanol synthesis and redox metabolism were lower than those in the control group. Moreover, proteins involved in gluconeogenesis, the oxidative TCA cycle, thiol peroxidase (TPX) for oxidative stress were significantly upregulated, indicating that inhibitor stress induced the stress response and metabolic regulation. In addition, the three inhibitors also showed stress specificity related to fatty acid synthesis, ATP synthesis, nucleic acid metabolism, nicotinic acid metabolism, cell wall synthesis, spore synthesis and flagellum synthesis and so on. CONCLUSIONS Integrated omics platforms provide insight into the cellular responses of C. acetobutylicum to cytotoxic inhibitors released during the deconstruction of lignocellulose. This insight allows us to fully improve the strain to adapt to a challenging culture environment, which will prove critical to the industrial efficacy of C. acetobutylicum.
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Affiliation(s)
- Huanhuan Liu
- State Key Laboratory of Food Nutrition and Safety, (Tianjin University of Science & Technology), Tianjin, 300457 China
- Key Laboratory of Food Nutrition and Safety, (Tianjin University of Science & Technology), Ministry of Education, Tianjin, 300457 China
| | - Jing Zhang
- State Key Laboratory of Food Nutrition and Safety, (Tianjin University of Science & Technology), Tianjin, 300457 China
- Key Laboratory of Food Nutrition and Safety, (Tianjin University of Science & Technology), Ministry of Education, Tianjin, 300457 China
| | - Jian Yuan
- TEDA School of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, 300457 China
| | - Xiaolong Jiang
- TEDA School of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, 300457 China
| | - Lingyan Jiang
- TEDA School of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, 300457 China
| | - Guang Zhao
- Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101 China
| | - Di Huang
- TEDA School of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, 300457 China
| | - Bin Liu
- TEDA School of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, 300457 China
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28
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Niglio S, Marzocchella A, Rehmann L. Clostridial conversion of corn syrup to Acetone-Butanol-Ethanol (ABE) via batch and fed-batch fermentation. Heliyon 2019; 5:e01401. [PMID: 30963127 PMCID: PMC6434287 DOI: 10.1016/j.heliyon.2019.e01401] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Revised: 03/17/2019] [Accepted: 03/18/2019] [Indexed: 11/28/2022] Open
Abstract
Corn syrup - a commercial product derived from saccharification of corn starch - was used to produce acetone-butanol-ethanol (ABE) by Clostridium spp. Screening of commercial Clostridium spp., substrate inhibition tests and fed-batch experiments were carried out to improve ABE production using corn syrup as only carbon source. The screening tests carried out in batch mode using a production media containing 50 g/L corn syrup revealed that C. saccharobutylicum was the best performer in terms of total solvent concentration (12.46 g/L), yield (0.30 g/g) and productivity (0.19 g/L/h) and it was selected for successive experiments. Concentration of corn syrup higher than 50 g/L resulted in no solvents production. Fed-batch fermentation improved ABE production with respect to batch fermentation: the butanol and solvent concentration increased up to 8.70 and 16.68 g/L, respectively. The study demonstrated the feasibility of producing solvents via ABE fermentation using corn syrup as a model substrate of concentrated sugar mixtures.
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Affiliation(s)
- Saverio Niglio
- Dipartimento di Ingegneria Chimica, Dei Materiali e della Produzione Industriale, Università degli Studi di Napoli Federico II, P.le V. Tecchio 80, 80125 Napoli, Italy
| | - Antonio Marzocchella
- Dipartimento di Ingegneria Chimica, Dei Materiali e della Produzione Industriale, Università degli Studi di Napoli Federico II, P.le V. Tecchio 80, 80125 Napoli, Italy
| | - Lars Rehmann
- Department of Chemical and Biochemical Engineering, University of Western Ontario, 1151 Richmond Street, London, ON, Canada
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Kolesinska B, Fraczyk J, Binczarski M, Modelska M, Berlowska J, Dziugan P, Antolak H, Kaminski ZJ, Witonska IA, Kregiel D. Butanol Synthesis Routes for Biofuel Production: Trends and Perspectives. MATERIALS (BASEL, SWITZERLAND) 2019; 12:E350. [PMID: 30678076 PMCID: PMC6384976 DOI: 10.3390/ma12030350] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 01/18/2019] [Accepted: 01/21/2019] [Indexed: 12/05/2022]
Abstract
Butanol has similar characteristics to gasoline, and could provide an alternative oxygenate to ethanol in blended fuels. Butanol can be produced either via the biotechnological route, using microorganisms such as clostridia, or by the chemical route, using petroleum. Recently, interest has grown in the possibility of catalytic coupling of bioethanol into butanol over various heterogenic systems. This reaction has great potential, and could be a step towards overcoming the disadvantages of bioethanol as a sustainable transportation fuel. This paper summarizes the latest research on butanol synthesis for the production of biofuels in different biotechnological and chemical ways; it also compares potentialities and limitations of these strategies.
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Affiliation(s)
- Beata Kolesinska
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Justyna Fraczyk
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Michal Binczarski
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Magdalena Modelska
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Joanna Berlowska
- Institute of Fermentation Technology and Microbiology, Faculty of Biochemistry and Food Sciences, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland.
| | - Piotr Dziugan
- Institute of Fermentation Technology and Microbiology, Faculty of Biochemistry and Food Sciences, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland.
| | - Hubert Antolak
- Institute of Fermentation Technology and Microbiology, Faculty of Biochemistry and Food Sciences, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland.
| | - Zbigniew J Kaminski
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Izabela A Witonska
- Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, 90-924 Lodz, Poland.
| | - Dorota Kregiel
- Institute of Fermentation Technology and Microbiology, Faculty of Biochemistry and Food Sciences, Lodz University of Technology, Wolczanska 171/173, 90-924 Lodz, Poland.
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Ferreira S, Pereira R, Liu F, Vilaça P, Rocha I. Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:230. [PMID: 31583016 PMCID: PMC6767645 DOI: 10.1186/s13068-019-1565-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 09/07/2019] [Indexed: 05/12/2023]
Abstract
BACKGROUND One of the European Union directives indicates that 10% of all fuels must be bio-synthesized by 2020. In this regard, biobutanol-natively produced by clostridial strains-poses as a promising alternative biofuel. One possible approach to overcome the difficulties of the industrial exploration of the native producers is the expression of more suitable pathways in robust microorganisms such as Escherichia coli. The enumeration of novel pathways is a powerful tool, allowing to identify non-obvious combinations of enzymes to produce a target compound. RESULTS This work describes the in silico driven design of E. coli strains able to produce butanol via 2-oxoglutarate by a novel pathway. This butanol pathway was generated by a hypergraph algorithm and selected from an initial set of 105,954 different routes by successively applying different filters, such as stoichiometric feasibility, size and novelty. The implementation of this pathway involved seven catalytic steps and required the insertion of nine heterologous genes from various sources in E. coli distributed in three plasmids. Expressing butanol genes in E. coli K12 and cultivation in High-Density Medium formulation seem to favor butanol accumulation via the 2-oxoglutarate pathway. The maximum butanol titer obtained was 85 ± 1 mg L-1 by cultivating the cells in bioreactors. CONCLUSIONS In this work, we were able to successfully translate the computational analysis into in vivo applications, designing novel strains of E. coli able to produce n-butanol via an innovative pathway. Our results demonstrate that enumeration algorithms can broad the spectrum of butanol producing pathways. This validation encourages further research to other target compounds.
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Affiliation(s)
- Sofia Ferreira
- CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
| | - Rui Pereira
- SilicoLife Lda, Rua do Canastreiro 15, 4715-387 Braga, Portugal
- Present Address: Department of Biology and Biological Engineering, Chalmers University of Technology, 412 96 Gothenburg, Sweden
| | - Filipe Liu
- CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- Present Address: Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL USA
| | - Paulo Vilaça
- SilicoLife Lda, Rua do Canastreiro 15, 4715-387 Braga, Portugal
| | - Isabel Rocha
- CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Oeiras, Portugal
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Abomohra AEF, Elshobary M. Biodiesel, Bioethanol, and Biobutanol Production from Microalgae. MICROALGAE BIOTECHNOLOGY FOR DEVELOPMENT OF BIOFUEL AND WASTEWATER TREATMENT 2019:293-321. [DOI: 10.1007/978-981-13-2264-8_13] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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32
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Engel M, Holtmann D, Ulber R, Tippkötter N. Increased Biobutanol Production by Mediator‐Less Electro‐Fermentation. Biotechnol J 2018; 14:e1800514. [DOI: 10.1002/biot.201800514] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 10/29/2018] [Indexed: 01/01/2023]
Affiliation(s)
- Mareike Engel
- Bioprocess EngineeringUniversity of Kaiserslautern67663 KaiserslauternGermany
| | - Dirk Holtmann
- Industrial BiotechnologyDECHEMA Research Institute60486 Frankfurt am MainGermany
| | - Roland Ulber
- Bioprocess EngineeringUniversity of Kaiserslautern67663 KaiserslauternGermany
| | - Nils Tippkötter
- Bioprocess EngineeringUniversity of Applied Science AachenHeinrich‐Mußmann‐Straße 152428 JülichGermany
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Segawa M, Wen C, Orita I, Nakamura S, Fukui T. Two NADH-dependent (S)-3-hydroxyacyl-CoA dehydrogenases from polyhydroxyalkanoate-producing Ralstonia eutropha. J Biosci Bioeng 2018; 127:294-300. [PMID: 30243533 DOI: 10.1016/j.jbiosc.2018.08.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 08/20/2018] [Accepted: 08/22/2018] [Indexed: 12/28/2022]
Abstract
Ralstonia eutropha H16 contains both NADH- and NADPH-dependent reduction activities to acetoacetyl-CoA, and the NADPH-dependent activity is mediated by PhaB paralogs with (R)-stereospecificity providing (R)-3-hydroxybutyryl (3HB)-CoA monomer for poly((R)-3-hydroxybutyrate) synthesis. In contrast, the gene encoding the NADH-dependent enzyme has not been identified to date. This study focused on the NADH-dependent dehydrogenase with (S)-stereospecificity in R. eutropha, as the (S)-specific reduction of acetoacetyl-CoA potentially competed with the polyester biosynthesis via (R)-3HB-CoA. The NADH-dependent reduction activity decreased to one-half when the gene for H16_A0282 (PaaH1), one of two homologs of clostridial NADH-3HB-CoA dehydrogenase, was deleted. The enzyme responsible for the remaining activity was partially purified and identified as H16_A0602 (Had) belonging to a different family from PaaH1. Gene disruption analysis elucidated that most of the NADH-dependent activity was mediated by PaaH1 and Had. The kinetic analysis using the recombinant enzymes indicated that PaaH1 and Had were both NADH-dependent 3-hydroxyacyl-CoA dehydrogenases with rather broad substrate specificity to 3-oxoacyl-CoAs of C4 to C8. The deletion of had in the R. eutropha strain previously engineered for biosynthesis of poly((R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate) led to decrease in the C6 composition of the copolyester synthesized from soybean oil, suggesting the role of Had in (S)-specific reduction of 3-oxohexanoyl-CoA with reverse β-oxidation direction. Crotonase ((S)-specific enoyl-CoA hydratase) in R. eutropha H16 was also partially purified and identified as H16_A3307.
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Affiliation(s)
- Mutsumi Segawa
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan
| | - Cheng Wen
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan
| | - Izumi Orita
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan
| | - Satoshi Nakamura
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan
| | - Toshiaki Fukui
- School of Life Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8501, Japan.
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Chen WH, Zeng YR. Mathematical model to appraise the inhibitory effect of phenolic compounds derived from lignin for biobutanol production. BIORESOURCE TECHNOLOGY 2018; 261:44-51. [PMID: 29653333 DOI: 10.1016/j.biortech.2018.04.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 03/30/2018] [Accepted: 04/02/2018] [Indexed: 06/08/2023]
Abstract
This study aimed to establish a mathematical modeling to evaluate the inhibitory effect of phenolic derivatives on acetone-butanol-ethanol (ABE) fermentation by Clostridium saccharoperbutylacetonicum N1-4. Vanillin, 4-hydroxybenzoic acid, and syringaldehyde were selected to represent guaiacyl, hydroxyphenyl, and syringyl phenols, respectively, to be examined in a series of fed-batch experiments. Results show the presence of phenolic derivatives blocked the pathway of the assimilation of organic acids and reduced cell growth and glucose utilization. The inhibition model projected that the levels of 0.13, 0.14, and 0.04 g L-1 for vanillin, 4-hydroxybenzoic acid, and syringaldehyde, respectively, resulted in 25% inhibition of butanol production, whereas 100% inhibition was predicted at the levels of 4.94, 4.37, and 4.20 g L-1 for vanillin, 4-hydroxybenzoic acid, and syringaldehyde, respectively. Syringaldehyde was more toxic than the other two compounds. The established model described that the phenolic compounds derived from different phenyl propane monomers of lignin severely obstructed biobutanol production.
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Affiliation(s)
- Wen-Hsing Chen
- Department of Environmental Engineering, National Ilan University, Yilan 260, Taiwan.
| | - Yan-Ru Zeng
- Department of Environmental Engineering, National Ilan University, Yilan 260, Taiwan
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Zhu C, Chen L, Xue C, Bai F. A novel close-circulating vapor stripping-vapor permeation technique for boosting biobutanol production and recovery. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:128. [PMID: 29755587 PMCID: PMC5934881 DOI: 10.1186/s13068-018-1129-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2018] [Accepted: 04/23/2018] [Indexed: 05/31/2023]
Abstract
BACKGROUND Butanol derived from renewable resources by microbial fermentation is considered as one of not only valuable platform chemicals but alternative advanced biofuels. However, due to low butanol concentration in fermentation broth, butanol production is restricted by high energy consumption for product recovery. For in situ butanol recovery techniques, such as gas stripping and pervaporation, the common problem is their low efficiency in harvesting and concentrating butanol. Therefore, there is a necessity to develop an advanced butanol recovery technique for cost-effective biobutanol production. RESULTS A close-circulating vapor stripping-vapor permeation (VSVP) process was developed with temperature-difference control for single-stage butanol recovery. In the best scenario, the highest butanol separation factor of 142.7 reported to date could be achieved with commonly used polydimethylsiloxane membrane, when temperatures of feed solution and membrane surroundings were 70 and 0 °C, respectively. Additionally, more ABE (31.2 vs. 17.7 g/L) were produced in the integrated VSVP process, with a higher butanol yield (0.21 vs. 0.17 g/g) due to the mitigation of butanol inhibition. The integrated VSVP process generated a highly concentrated permeate containing 212.7 g/L butanol (339.3 g/L ABE), with the reduced energy consumption of 19.6 kJ/g-butanol. CONCLUSIONS Therefore, the present study demonstrated a well-designed energy-efficient technique named by vapor stripping-vapor permeation for single-stage butanol removal. The butanol separation factor was multiplied by the temperature-difference control strategy which could double butanol recovery performance. This advanced VSVP process can completely eliminate membrane fouling risk for fermentative butanol separation, which is superior to other techniques.
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Affiliation(s)
- Chao Zhu
- School of Life Science and Biotechnology, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Lijie Chen
- School of Life Science and Biotechnology, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Chuang Xue
- School of Life Science and Biotechnology, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
| | - Fengwu Bai
- School of Life Science and Biotechnology, Dalian University of Technology, No 2 Linggong Road, Dalian, 116024 China
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Patakova P, Kolek J, Sedlar K, Koscova P, Branska B, Kupkova K, Paulova L, Provaznik I. Comparative analysis of high butanol tolerance and production in clostridia. Biotechnol Adv 2018; 36:721-738. [DOI: 10.1016/j.biotechadv.2017.12.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 12/05/2017] [Accepted: 12/12/2017] [Indexed: 12/24/2022]
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Li T, Zhang C, Yang KL, He J. Unique genetic cassettes in a Thermoanaerobacterium contribute to simultaneous conversion of cellulose and monosugars into butanol. SCIENCE ADVANCES 2018; 4:e1701475. [PMID: 29740597 PMCID: PMC5938282 DOI: 10.1126/sciadv.1701475] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Accepted: 02/07/2018] [Indexed: 05/25/2023]
Abstract
The demand for cellulosic biofuels is on the rise because of the anticipation for sustainable energy and less greenhouse gas emissions in the future. However, production of cellulosic biofuels, especially cellulosic butanol, has been hampered by the lack of potent microbes that are capable of converting cellulosic biomass into biofuels. We report a wild-type Thermoanaerobacterium thermosaccharolyticum strain TG57, which is capable of using microcrystalline cellulose directly to produce butanol (1.93 g/liter) as the only final product (without any acetone or ethanol produced), comparable to that of engineered microbes thus far. Strain TG57 exhibits significant advances including unique genes responsible for a new butyrate synthesis pathway, no carbon catabolite repression, and the absence of genes responsible for acetone synthesis (which is observed as the main by-product in most Clostridium strains known today). Furthermore, the use of glucose analog 2-deoxyglucose posed a selection pressure to facilitate isolation of strain TG57 with deletion/silencing of carbon catabolite repressor genes-the ccr and xylR genes-and thus is able to simultaneously ferment glucose, xylose, and arabinose to produce butanol (7.33 g/liter) as the sole solvent. Combined analysis of genomic and transcriptomic data revealed unusual aspects of genome organization, numerous determinants for unique bioconversions, regulation of central metabolic pathways, and distinct transcriptomic profiles. This study provides a genome-level understanding of how cellulose is metabolized by T. thermosaccharolyticum and sheds light on the potential of competitive and sustainable biofuel production.
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Affiliation(s)
- Tinggang Li
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576
| | - Chen Zhang
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576
| | - Kun-Lin Yang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore 117576
| | - Jianzhong He
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576
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38
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Gyulev IS, Willson BJ, Hennessy RC, Krabben P, Jenkinson ER, Thomas GH. Part by Part: Synthetic Biology Parts Used in Solventogenic Clostridia. ACS Synth Biol 2018; 7:311-327. [PMID: 29186949 DOI: 10.1021/acssynbio.7b00327] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The solventogenic Clostridia are of interest to the chemical industry because of their natural ability to produce chemicals such as butanol, acetone and ethanol from diverse feedstocks. Their use as whole cell factories presents multiple metabolic engineering targets that could lead to improved sustainability and profitability of Clostridium industrial processes. However, engineering efforts have been held back by the scarcity of genetic and synthetic biology tools. Over the past decade, genetic tools to enable transformation and chromosomal modifications have been developed, but the lack of a broad palette of synthetic biology parts remains one of the last obstacles to the rapid engineered improvement of these species for bioproduction. We have systematically reviewed existing parts that have been used in the modification of solventogenic Clostridia, revealing a narrow range of empirically chosen and nonengineered parts that are in current use. The analysis uncovers elements, such as promoters, transcriptional terminators and ribosome binding sites where increased fundamental knowledge is needed for their reliable use in different applications. Together, the review provides the most comprehensive list of parts used and also presents areas where an improved toolbox is needed for full exploitation of these industrially important bacteria.
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Affiliation(s)
- Ivan S. Gyulev
- Department
of Biology, University of York, Wentworth Way, York YO10 5DD, United Kingdom
| | - Benjamin J. Willson
- Department
of Biology, University of York, Wentworth Way, York YO10 5DD, United Kingdom
| | - Rosanna C. Hennessy
- Department
of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, 1871, Denmark
| | - Preben Krabben
- Green Biologics Limited, Milton Park, Abingdon, Oxfordshire OX14 4RU, United Kingdom
| | | | - Gavin H. Thomas
- Department
of Biology, University of York, Wentworth Way, York YO10 5DD, United Kingdom
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Kaushal M, Chary KVN, Ahlawat S, Palabhanvi B, Goswami G, Das D. Understanding regulation in substrate dependent modulation of growth and production of alcohols in Clostridium sporogenes NCIM 2918 through metabolic network reconstruction and flux balance analysis. BIORESOURCE TECHNOLOGY 2018; 249:767-776. [PMID: 29136931 DOI: 10.1016/j.biortech.2017.10.080] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 10/18/2017] [Accepted: 10/20/2017] [Indexed: 06/07/2023]
Abstract
Flux Balance Analysis was performed for Clostridium sporogenes NCIM 2918 grown on sole glucose and glycerol or glucose-glycerol combinations at varied concentrations. During acidogenesis, glucose and glucose-glycerol combinations favored improved growth and butyric acid production. Glycerol fermentation was however marked by reduced growth and predominant ethanol synthesis. Further, with increase of glycerol fraction in glucose-glycerol blend, flux towards ethanol synthesis linearly increased with simultaneous decrease in butanol flux. Elevated ATP demand due to improved growth was satisfied by upregulated carbon flux towards butyric acid synthesis during both glucose and dual substrate fermentations. Possible repression of pyruvate carboxylase by glycerol resulting in downturn of carbon uptake flux towards TCA cycle through anaplerotic reaction may be responsible for reduced growth in glycerol fermentation. Ammonium acetate mediated induction of acetic acid utilization, during acidogenesis, led to excess acetyl-CoA generation and its subsequent metabolism to lesser reduced products, butyric acid or ethanol.
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Affiliation(s)
- Mehak Kaushal
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - K Venkata Narayana Chary
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Saumya Ahlawat
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Basavaraj Palabhanvi
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Gargi Goswami
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Debasish Das
- Department of Biosciences & Bioengineering, Indian Institute of Technology, Guwahati, Assam 781039, India; DBT-PAN IIT Centre for Bioenergy, Indian Institute of Technology, Guwahati, Assam 781039, India.
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40
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Wainaina S, Horváth IS, Taherzadeh MJ. Biochemicals from food waste and recalcitrant biomass via syngas fermentation: A review. BIORESOURCE TECHNOLOGY 2018; 248:113-121. [PMID: 28651875 DOI: 10.1016/j.biortech.2017.06.075] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Revised: 06/12/2017] [Accepted: 06/13/2017] [Indexed: 05/21/2023]
Abstract
An effective method for the production of value-added chemicals from food waste and lignocellulosic materials is a hybrid thermal-biological process, which involves gasification of the solid materials to syngas (primarily CO and H2) followed by fermentation. This paper reviews the recent advances in this process. The special focus is on the cultivation methods that involve the use of single strains, defined mixed cultures and undefined mixed cultures for production of carboxylic acids and higher alcohols. A rate limiting step in these processes is the low mass transfer between the gas and the liquid phases. Therefore, novel techniques that can enhance the gas-liquid mass transfer including membrane- and trickle-bed bioreactors were discussed. Such bioreactors have shown promising results in increasing the volumetric mass transfer coefficient (kLa). High gas pressure also influences the mass transfer in certain batch processes, although the presence of impurities in the gas would impede the process.
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Affiliation(s)
- Steven Wainaina
- Swedish Centre for Resource Recovery, University of Borås, 50190 Borås, Sweden
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41
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Hussain A, Filiatrault M, Guiot SR. Acidogenic digestion of food waste in a thermophilic leach bed reactor: Effect of pH and leachate recirculation rate on hydrolysis and volatile fatty acid production. BIORESOURCE TECHNOLOGY 2017; 245:1-9. [PMID: 28892677 DOI: 10.1016/j.biortech.2017.08.130] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2017] [Revised: 08/18/2017] [Accepted: 08/20/2017] [Indexed: 06/07/2023]
Abstract
The effect of pH control (4, 5, 6, 7) on volatile fatty acids (VFA) production from food waste was investigated in a leach bed reactor (LBR) operated at 50°C. Stabilisation of pH at 7 resulted in hydrolysis yield of 530g soluble chemical oxygen demand (sCOD)/kg total volatile solids (TVS) added and VFA yield of 247gCOD/kg TVS added, which were highest among all pH tested. Butyric acid dominated the VFA mix (49-54%) at pH of 7 and 6, while acetate composed the primary VFA (41-56%) at pH of 4 and 5. A metabolic shift towards lactic acid production was observed at pH of 5. Improving leachate recirculation rate further improved the hydrolysis and degradation efficiency by 10-16% and the acidification yield to 340gCOD/kgTVS added. The butyric acid concentration of 16.8g/L obtained at neutral pH conditions is among the highest reported in literature.
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Affiliation(s)
- Abid Hussain
- Anaerobic Technologies and Bioprocess Control Group, Energy, Mining and Environment, National Research Council Canada, Montreal, Canada
| | - Mélissa Filiatrault
- Anaerobic Technologies and Bioprocess Control Group, Energy, Mining and Environment, National Research Council Canada, Montreal, Canada
| | - Serge R Guiot
- Anaerobic Technologies and Bioprocess Control Group, Energy, Mining and Environment, National Research Council Canada, Montreal, Canada.
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42
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Sellés Vidal L, Kelly CL, Mordaka PM, Heap JT. Review of NAD(P)H-dependent oxidoreductases: Properties, engineering and application. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2017; 1866:327-347. [PMID: 29129662 DOI: 10.1016/j.bbapap.2017.11.005] [Citation(s) in RCA: 162] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 10/27/2017] [Accepted: 11/08/2017] [Indexed: 11/27/2022]
Abstract
NAD(P)H-dependent oxidoreductases catalyze the reduction or oxidation of a substrate coupled to the oxidation or reduction, respectively, of a nicotinamide adenine dinucleotide cofactor NAD(P)H or NAD(P)+. NAD(P)H-dependent oxidoreductases catalyze a large variety of reactions and play a pivotal role in many central metabolic pathways. Due to the high activity, regiospecificity and stereospecificity with which they catalyze redox reactions, they have been used as key components in a wide range of applications, including substrate utilization, the synthesis of chemicals, biodegradation and detoxification. There is great interest in tailoring NAD(P)H-dependent oxidoreductases to make them more suitable for particular applications. Here, we review the main properties and classes of NAD(P)H-dependent oxidoreductases, the types of reactions they catalyze, some of the main protein engineering techniques used to modify their properties and some interesting examples of their modification and application.
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Affiliation(s)
- Lara Sellés Vidal
- Centre for Synthetic Biology and Innovation, Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom
| | - Ciarán L Kelly
- Centre for Synthetic Biology and Innovation, Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom
| | - Paweł M Mordaka
- Centre for Synthetic Biology and Innovation, Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom
| | - John T Heap
- Centre for Synthetic Biology and Innovation, Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, United Kingdom.
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43
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Darvishi F, Fathi Z, Ariana M, Moradi H. Yarrowia lipolytica as a workhorse for biofuel production. Biochem Eng J 2017. [DOI: 10.1016/j.bej.2017.08.013] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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44
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Xiao C, Fan W, Du S, Liu L, Wang C, Guo M, Zhang L, Zhang M, Yu L. A novel glycosylated solution from Dioscorea zingiberensis C.H. Wright significantly improves the solvent productivity of Clostridium beijerinckii. BIORESOURCE TECHNOLOGY 2017; 241:317-324. [PMID: 28577480 DOI: 10.1016/j.biortech.2017.03.176] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 03/25/2017] [Accepted: 03/27/2017] [Indexed: 06/07/2023]
Abstract
The economics of bio-solvent production are largely dependent on the cost of the fermentation substrate. Dioscorea zingiberensis C.H. Wright (DZW), the main raw material used to produce saponin, contains 13-18% starch which can be directly saccharified to a saccharification liquid of DZW starch (SLDS) that contains abundant nutrients. In this study, the water-soluble micromolecule compounds in SLDS were quantified through 1H NMR. Using SLDS as the substrate to conduct ABE fermentation by Clostridium beijerinckii, the fermentation cycle was shortened 24h, the maximum biomass and consumption rate of the glucose significantly increased, and the productivity of total solvents were increased by 0.244±0.010g/L/h compared to standard P2 medium. Expression analysis of genes encoding key enzymes involved in acetone and butanol production and glucose consumption showed that they were induced by SLDS. Taken together, SLDS is a useful and renewable glycosylated solution for ABE fermentation.
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Affiliation(s)
- Chuan Xiao
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Wei Fan
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China
| | - Shengjie Du
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Laizhuang Liu
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Changli Wang
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Mengzhen Guo
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Liwei Zhang
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Meng Zhang
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Longjiang Yu
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China; Key Laboratory of Molecular Biophysics Ministry of Education, Huazhong University of Science and Technology, Wuhan 430074, China.
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45
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Zhao X, Kasbi M, Chen J, Peres S, Jolicoeur M. A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation byClostridium acetobutylicumATCC 824, with riboflavin as a by-product. Biotechnol Bioeng 2017; 114:2907-2919. [DOI: 10.1002/bit.26393] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Accepted: 07/24/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Xinhe Zhao
- Research Laboratory in Applied Metabolic Engineering; Department of Chemical Engineering; École Polytechnique de Montréal; Montréal Québec Canada
| | - Mayssa Kasbi
- Research Laboratory in Applied Metabolic Engineering; Department of Chemical Engineering; École Polytechnique de Montréal; Montréal Québec Canada
| | - Jingkui Chen
- Research Laboratory in Applied Metabolic Engineering; Department of Chemical Engineering; École Polytechnique de Montréal; Montréal Québec Canada
| | - Sabine Peres
- LRI, Université Paris-Sud; CNRS, Université Paris-Saclay; Orsay France
- MaIAGE, INRA; Université Paris-Saclay; Jouy-en-Josas France
| | - Mario Jolicoeur
- Research Laboratory in Applied Metabolic Engineering; Department of Chemical Engineering; École Polytechnique de Montréal; Montréal Québec Canada
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Mathematical modelling of clostridial acetone-butanol-ethanol fermentation. Appl Microbiol Biotechnol 2017; 101:2251-2271. [PMID: 28210797 PMCID: PMC5320022 DOI: 10.1007/s00253-017-8137-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 01/14/2017] [Accepted: 01/16/2017] [Indexed: 12/24/2022]
Abstract
Clostridial acetone-butanol-ethanol (ABE) fermentation features a remarkable shift in the cellular metabolic activity from acid formation, acidogenesis, to the production of industrial-relevant solvents, solventogensis. In recent decades, mathematical models have been employed to elucidate the complex interlinked regulation and conditions that determine these two distinct metabolic states and govern the transition between them. In this review, we discuss these models with a focus on the mechanisms controlling intra- and extracellular changes between acidogenesis and solventogenesis. In particular, we critically evaluate underlying model assumptions and predictions in the light of current experimental knowledge. Towards this end, we briefly introduce key ideas and assumptions applied in the discussed modelling approaches, but waive a comprehensive mathematical presentation. We distinguish between structural and dynamical models, which will be discussed in their chronological order to illustrate how new biological information facilitates the ‘evolution’ of mathematical models. Mathematical models and their analysis have significantly contributed to our knowledge of ABE fermentation and the underlying regulatory network which spans all levels of biological organization. However, the ties between the different levels of cellular regulation are not well understood. Furthermore, contradictory experimental and theoretical results challenge our current notion of ABE metabolic network structure. Thus, clostridial ABE fermentation still poses theoretical as well as experimental challenges which are best approached in close collaboration between modellers and experimentalists.
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47
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ARTP mutation and genome shuffling of ABE fermentation symbiotic system for improvement of butanol production. Appl Microbiol Biotechnol 2017; 101:2189-2199. [DOI: 10.1007/s00253-017-8093-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 12/20/2016] [Accepted: 12/23/2016] [Indexed: 12/20/2022]
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48
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Gallardo R, Alves M, Rodrigues L. Influence of nutritional and operational parameters on the production of butanol or 1,3-propanediol from glycerol by a mutant Clostridium pasteurianum. N Biotechnol 2017; 34:59-67. [DOI: 10.1016/j.nbt.2016.03.002] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Revised: 01/19/2016] [Accepted: 03/31/2016] [Indexed: 12/20/2022]
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49
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Aristilde L. Metabolite labelling reveals hierarchies in Clostridium acetobutylicum that selectively channel carbons from sugar mixtures towards biofuel precursors. Microb Biotechnol 2016; 10:162-174. [PMID: 27878973 PMCID: PMC5270725 DOI: 10.1111/1751-7915.12459] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2016] [Accepted: 10/23/2016] [Indexed: 12/30/2022] Open
Abstract
Clostridial fermentation of cellulose and hemicellulose relies on the cellular physiology controlling the metabolism of the cellulosic hexose sugar (glucose) with respect to the hemicellulosic pentose sugars (xylose and arabinose) and the hemicellulosic hexose sugars (galactose and mannose). Here, liquid chromatography–mass spectrometry and stable isotope tracers in Clostridium acetobutylicum were applied to investigate the metabolic hierarchy of glucose relative to the different hemicellulosic sugars towards two important biofuel precursors, acetyl‐coenzyme A and butyryl‐coenzyme A. The findings revealed constitutive metabolic hierarchies in C. acetobutylicum that facilitate (i) selective investment of hemicellulosic pentoses towards ribonucleotide biosynthesis without substantial investment into biofuel production and (ii) selective contribution of hemicellulosic hexoses through the glycolytic pathway towards biofuel precursors. Long‐term isotopic enrichment demonstrated incorporation of both pentose sugars into pentose‐phosphates and ribonucleotides in the presence of glucose. Kinetic labelling data, however, showed that xylose was not routed towards the biofuel precursors but there was minor contribution from arabinose. Glucose hierarchy over the hemicellulosic hexoses was substrate‐dependent. Kinetic labelling of hexose‐phosphates and triose‐phosphates indicated that mannose was assimilated but not galactose. Labelling of both biofuel precursors confirmed this metabolic preference. These results highlight important metabolic considerations in the accounting of clostridial mixed‐sugar utilization.
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Affiliation(s)
- Ludmilla Aristilde
- Department of Biological and Environmental Engineering, College of Agriculture and Life Sciences, Cornell University, Ithaca, NY, 14853, USA
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Ferredoxin:NAD+ Oxidoreductase of Thermoanaerobacterium saccharolyticum and Its Role in Ethanol Formation. Appl Environ Microbiol 2016; 82:7134-7141. [PMID: 27694237 DOI: 10.1128/aem.02130-16] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Accepted: 09/27/2016] [Indexed: 01/01/2023] Open
Abstract
Ferredoxin:NAD+ oxidoreductase (NADH-FNOR) catalyzes the transfer of electrons from reduced ferredoxin to NAD+ This enzyme has been hypothesized to be the main enzyme responsible for ferredoxin oxidization in the NADH-based ethanol pathway in Thermoanaerobacterium saccharolyticum; however, the corresponding gene has not yet been identified. Here, we identified the Tsac_1705 protein as a candidate FNOR based on the homology of its functional domains. We then confirmed its activity in vitro with a ferredoxin-based FNOR assay. To determine its role in metabolism, the tsac_1705 gene was deleted in different strains of T. saccharolyticum In wild-type T. saccharolyticum, deletion of tsac_1705 resulted in a 75% loss of NADH-FNOR activity, which indicated that Tsac_1705 is the main NADH-FNOR in T. saccharolyticum When both NADH- and NADPH-linked FNOR genes were deleted, the ethanol titer decreased and the ratio of ethanol to acetate approached unity, indicative of the absence of FNOR activity. Finally, we tested the effect of heterologous expression of Tsac_1705 in Clostridium thermocellum and found improvements in both the titer and the yield of ethanol. IMPORTANCE Redox balance plays a crucial role in many metabolic engineering strategies. Ferredoxins are widely used as electron carriers for anaerobic microorganism and plants. This study identified the gene responsible for electron transfer from ferredoxin to NAD+, a key reaction in the ethanol production pathway of this organism and many other metabolic pathways. Identification of this gene is an important step in transferring the ethanol production ability of this organism to other organisms.
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