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Kamzeeva P, Dagaev N, Lizunova S, Khodarovich Y, Sogomonyan A, Kolchanova A, Pokrovsky V, Alferova V, Chistov A, Eshtukov-Shcheglov A, Eshtukova-Shcheglova E, Belyaev E, Skvortsov D, Varizhuk A, Aralov A. Synthesis and Biological Evaluation of Benzo [4,5]- and Naphtho[2',1':4,5]imidazo[1,2-c]pyrimidinone Derivatives. Biomolecules 2023; 13:1669. [PMID: 38002351 PMCID: PMC10669118 DOI: 10.3390/biom13111669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 11/13/2023] [Accepted: 11/15/2023] [Indexed: 11/26/2023] Open
Abstract
Azacarbazoles have attracted significant interest due to their valuable properties, such as anti-pathogenic and antitumor activity. In this study, a series of structurally related tricyclic benzo[4,5]- and tertacyclic naphtho[2',1':4,5]imidazo[1,2-c]pyrimidinone derivatives with one or two positively charged tethers were synthesized and evaluated for anti-proliferative activity. Lead tetracyclic derivative 5b with two amino-bearing arms inhibited the metabolic activity of A549 lung adenocarcinoma cells with a CC50 value of 3.6 μM, with remarkable selectivity (SI = 17.3) over VA13 immortalized fibroblasts. Cell-cycle assays revealed that 5b triggers G2/M arrest without signs of apoptosis. A study of its interaction with various DNA G4s and duplexes followed by dual luciferase and intercalator displacement assays suggests that intercalation, rather than the modulation of G4-regulated oncogene expression, might contribute to the observed activity. Finally, a water-soluble salt of 5b was shown to cause no acute toxic effects, changes in mice behavior, or any decrease in body weight after a 72 h treatment at concentrations up to 20 mg/kg. Thus, 5b is a promising candidate for studies in vivo; however, further investigations are needed to elucidate its molecular target(s).
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Affiliation(s)
- Polina Kamzeeva
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
| | - Nikolai Dagaev
- Department of Chemistry and Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991 Moscow, Russia; (N.D.)
| | - Sofia Lizunova
- Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia
| | - Yuri Khodarovich
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
- Research and Educational Resource Center for Cellular Technologies, The Peoples’ Friendship University of Russia, 117198 Moscow, Russia
| | - Anna Sogomonyan
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
| | - Anastasia Kolchanova
- Department of Chemistry and Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991 Moscow, Russia; (N.D.)
| | - Vadim Pokrovsky
- N.N. Blokhin Cancer Research Center, 115478 Moscow, Russia
- Research Institute of Molecular and Cellular Medicine, RUDN University, 117198 Moscow, Russia
| | - Vera Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
| | - Alexey Chistov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
| | - Artur Eshtukov-Shcheglov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
| | | | - Evgeny Belyaev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, 119071 Moscow, Russia
| | - Dmitry Skvortsov
- Department of Chemistry and Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 119991 Moscow, Russia; (N.D.)
| | - Anna Varizhuk
- Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia
- Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
- G4_Interact, USERN, University of Pavia, 27100 Pavia, Italy
| | - Andrey Aralov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia; (P.K.)
- Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, 119435 Moscow, Russia
- G4_Interact, USERN, University of Pavia, 27100 Pavia, Italy
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2
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Belkadi A, Kenouche S, Melkemi N, Daoud I, Djebaili R. K-means clustering analysis, ADME/pharmacokinetic prediction, MEP, and molecular docking studies of potential cytotoxic agents. Struct Chem 2021. [DOI: 10.1007/s11224-021-01796-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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3
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Verma VA, Saundane AR, Meti RS, Vennapu DR. Synthesis of novel indolo[3,2-c]isoquinoline derivatives bearing pyrimidine, piperazine rings and their biological evaluation and docking studies against COVID-19 virus main protease. J Mol Struct 2021; 1229:129829. [PMID: 33390613 PMCID: PMC7767577 DOI: 10.1016/j.molstruc.2020.129829] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 12/05/2020] [Accepted: 12/21/2020] [Indexed: 12/19/2022]
Abstract
A series of hybrid indolo[3,2-c]isoquinoline (δ-carboline) analogs incorporating two pyrimidine and piperizine ring frameworks were synthesized. Intending biological activities and SAR we propose replacements of fluorine, methyl and methoxy of synthetic compounds for noteworthy antimicrobial, antioxidant, anticancer and anti-tuberculosis activities. Among these compounds 3a, 4a and 5e were progressively strong against E. coli and K. pneumonia. Whereas, compounds 4a, 5a and 6a with addition of various functional groups (OCH3, CH3) were excellent against S. aureus and B. subtilis. Compound 5c exhibited strong RSA and dynamic ferrous ion (Fe2+) metal chelating impact with IC50 of 7.88 ± 0.93 and 4.06 ± 0.31 µg/mL, respectively. Compound 5e was considerably cytotoxic against all cancer cells displaying activity better than the standard drug. Compounds 6b and 6e inhibited M. tuberculosis (MIC 1.0 mg/L) considerably. Molecular docking studies indicate that compounds 4d, 5a, 5b, 6b and 6f exhibited good interactions with 6LZE (COVID-19) and 6XFN (SARS-CoV-2) at active sites. The structure of the synthesized compounds were elementally analyzed using IR, 1H, 13C NMR and mass spectral information.
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Affiliation(s)
- Vaijinath A. Verma
- Department of Chemistry, Shri Prabhu Arts, Science and J.M. Bohra Commerce, Degree College, Shorapur-585 228, Yadgir, Karnataka, India,Corresponding author
| | - Anand R. Saundane
- Department of P.G. Studies and Research in Chemistry, Gulbarga University, Kalaburagi 585106, Karnataka, India
| | - Rajkumar S. Meti
- Department of Biochemistry, Mangalore University, P.G. Centre Chikka, Aluvara 571234, Karnataka, India
| | - Dushyanth R. Vennapu
- Department of Pharmaceutical Chemistry, KLE University College of Pharmacy, Belagavi 5900010, Karnataka, India
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4
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Sarhan AAM, Boraei ATA, Barakat A, Nafie MS. Discovery of hydrazide-based pyridazino[4,5-b]indole scaffold as a new phosphoinositide 3-kinase (PI3K) inhibitor for breast cancer therapy. RSC Adv 2020; 10:19534-19541. [PMID: 35515454 PMCID: PMC9054070 DOI: 10.1039/d0ra02798g] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 04/28/2020] [Indexed: 02/05/2023] Open
Abstract
The mono and dialkylation of pyridazino[4,5-b]indole with a set of alkylating agents were achieved. The synthesized pyridazino[4,5-b]indole hits have been evaluated and discovered as a new phosphoinositide 3-kinase (PI3K) inhibitor for breast cancer therapy.
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Affiliation(s)
- Ahmed A. M. Sarhan
- Chemistry Department
- Faculty of Science
- Arish University
- Al-Arish 45511
- Egypt
| | - Ahmed T. A. Boraei
- Chemistry Department
- Faculty of Science
- Suez Canal University
- Ismailia 41522
- Egypt
| | - Assem Barakat
- Chemistry Department
- College of Science
- King Saud University
- Riyadh 11451
- Saudi Arabia
| | - Mohamed S. Nafie
- Chemistry Department
- Faculty of Science
- Suez Canal University
- Ismailia 41522
- Egypt
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5
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Vyalyh JV, Suzdalev KF, Lisovin AV, Kletskii ME, Burov ON, Kurbatov SV. From 3-Acyl-2-methylindoles to γ-Carbolines: Li-Promoted Cycloaddition Reaction and Its Quantum Chemical Study. J Org Chem 2019; 84:13721-13732. [DOI: 10.1021/acs.joc.9b01926] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Julia V. Vyalyh
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | | | - Anton V. Lisovin
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Mikhail E. Kletskii
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Oleg N. Burov
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Sergey V. Kurbatov
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
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6
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Urmode TD, Dawange MA, Shinde VS, Kusurkar RS. Synthesis of spiroindolone scaffolds by Pictet-Spengler spirocyclisation using β-cyclodextrin-SO3H as a recyclable catalyst. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.05.089] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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7
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Chepyshev SV, Lujan-Montelongo JA, Chao A, Fleming FF. Alkenyl Isocyanide Conjugate Additions: A Rapid Route to γ-Carbolines. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201612574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sergiy V. Chepyshev
- Department of Chemistry; Drexel University; 32 South 32nd St. Philadelphia PA 19104 USA
| | - J. Armando Lujan-Montelongo
- Departmento de Química; Centro de Investigación y de Estudios Avanzados (Cinvestav); Av. Instituto Politécnico Nacional 2508 Ciudad de México 07360 México
| | - Allen Chao
- Department of Chemistry; Drexel University; 32 South 32nd St. Philadelphia PA 19104 USA
| | - Fraser F. Fleming
- Department of Chemistry; Drexel University; 32 South 32nd St. Philadelphia PA 19104 USA
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8
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Chepyshev SV, Lujan-Montelongo JA, Chao A, Fleming FF. Alkenyl Isocyanide Conjugate Additions: A Rapid Route to γ-Carbolines. Angew Chem Int Ed Engl 2017; 56:4310-4313. [PMID: 28295938 PMCID: PMC5667947 DOI: 10.1002/anie.201612574] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Revised: 02/07/2017] [Indexed: 11/05/2022]
Abstract
Isocyanides are exceptional building blocks, the wide deployment of which in multicomponent and metal-insertion reactions belies their limited availability. The first conjugate addition/alkylation to alkenyl isocyanides is described, which addresses this deficiency. An array of organolithiums, magnesiates, enolates, and metalated nitriles add conjugately to β- and β,β-disubstituted arylsulfonyl alkenyl isocyanides to rapidly assemble diverse isocyanide scaffolds. The intermediate metalated isocyanides are efficiently trapped with electrophiles to generate substituted isocyanides incorporating contiguous tri- and tetra-substituted centers. The substituted isocyanides are ideally functionalized for elaboration into synthetic targets as illustrated by the three-step synthesis of γ-carboline N-methyl ingenine B.
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Affiliation(s)
- Sergiy V Chepyshev
- Department of Chemistry, Drexel University, 32 South 32nd St., Philadelphia, PA, 19104, USA
| | - J Armando Lujan-Montelongo
- Departmento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), Av. Instituto Politécnico Nacional 2508, Ciudad de México, 07360, México
| | - Allen Chao
- Department of Chemistry, Drexel University, 32 South 32nd St., Philadelphia, PA, 19104, USA
| | - Fraser F Fleming
- Department of Chemistry, Drexel University, 32 South 32nd St., Philadelphia, PA, 19104, USA
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9
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Dondas HA, Hempshall A, Narramore S, Kilner C, Fishwick CW, Grigg R. γ-Carboline AC190 analogues via palladium catalysed allene insertion stereo and regioselective 3- and 5-component cascades. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.01.025] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Hingane DG, Parekh NP, Khan A, Kusurkar RS. Efficient synthetic route toward biologically active γ-carboline derivatives. SYNTHETIC COMMUN 2016. [DOI: 10.1080/00397911.2015.1103874] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Dattatray G. Hingane
- Department of Chemistry, Savitribai Phule Pune University, Pune, Maharashtra, India
| | - Nikita P. Parekh
- Department of Chemistry, Savitribai Phule Pune University, Pune, Maharashtra, India
| | - Ayesha Khan
- Department of Chemistry, Savitribai Phule Pune University, Pune, Maharashtra, India
| | - Radhika S. Kusurkar
- Department of Chemistry, Savitribai Phule Pune University, Pune, Maharashtra, India
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11
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Dagar A, Biswas S, Samanta S. A catalyst-free, efficient green MCR protocol for access to functionalized γ-carbolines in water. RSC Adv 2015. [DOI: 10.1039/c5ra08422a] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
A catalyst-free green procedure for access to substituted γ-carbolines has been achieved in water with excellent yields via a MCR reaction of 3-formyl indole derivatives, aldehydes with NH4OAc at room temperature under aerobic conditions.
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Affiliation(s)
- Anuradha Dagar
- Indian Institute of Technology
- Department of Technology
- Indore
- India
| | - Soumen Biswas
- Indian Institute of Technology
- Department of Technology
- Indore
- India
| | - Sampak Samanta
- Indian Institute of Technology
- Department of Technology
- Indore
- India
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12
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Vaidya A, Jain S, Jain AK, Prashanthakumar BR, Kashaw SK, Agrawal RK. Computational analysis of quinoline derivatives as potent topoisomerase-II inhibitors. Med Chem Res 2014. [DOI: 10.1007/s00044-014-1131-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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13
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Zhu Y, Shen XR, Tang HT, Lin M, Zhan ZP. Silver(i)-catalyzed annulation for the regioselective synthesis of N-imino-γ-carbolinium ylides from hydrazones of indole-3-carbonyl derivatives and propargylic alcohols. Org Biomol Chem 2014; 12:9514-8. [DOI: 10.1039/c4ob02020k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A regioselective efficient synthetic approach to N-imino-γ-carbolinium ylides via AgOTf-catalyzed iminoannulation from indole derivatives and propargylic alcohols has been developed.
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Affiliation(s)
- Yu Zhu
- Department of Chemistry and Key Laboratory for Chemical Biology of Fujian Province
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen, People's Republic of China
| | - Xin-Rui Shen
- Department of Chemistry and Key Laboratory for Chemical Biology of Fujian Province
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen, People's Republic of China
| | - Hai-Tao Tang
- Department of Chemistry and Key Laboratory for Chemical Biology of Fujian Province
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen, People's Republic of China
| | - Min Lin
- Department of Chemistry and Key Laboratory for Chemical Biology of Fujian Province
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen, People's Republic of China
| | - Zhuang-Ping Zhan
- Department of Chemistry and Key Laboratory for Chemical Biology of Fujian Province
- College of Chemistry and Chemical Engineering
- Xiamen University
- Xiamen, People's Republic of China
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14
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Hao WJ, Wang SY, Ji SJ. Iodine-Catalyzed Cascade Formal [3 + 3] Cycloaddition Reaction of Indolyl Alcohol Derivatives with Enaminones: Constructions of Functionalized Spirodihydrocarbolines. ACS Catal 2013. [DOI: 10.1021/cs400703u] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Wen-Juan Hao
- Key Laboratory of Organic Synthesis of Jiangsu Province, College
of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Shun-Yi Wang
- Key Laboratory of Organic Synthesis of Jiangsu Province, College
of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Shun-Jun Ji
- Key Laboratory of Organic Synthesis of Jiangsu Province, College
of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
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15
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Microbial transformation of azaarenes and potential uses in pharmaceutical synthesis. Appl Microbiol Biotechnol 2012; 95:871-89. [PMID: 22740048 DOI: 10.1007/s00253-012-4220-z] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 05/30/2012] [Accepted: 05/31/2012] [Indexed: 10/28/2022]
Abstract
Pyridine, quinoline, acridine, indole, carbazole, and other heterocyclic nitrogen-containing compounds (azaarenes) can be transformed by cultures of bacteria and fungi to produce a variety of new derivatives, many of which have biological activity. In many cases, the microbial biotransformation processes are regio- and stereoselective so that the transformation products may be useful for the synthesis of new candidate drugs.
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16
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Design, synthesis, and biological evaluation of novel γ-carboline ketones as anticancer agents. Eur J Med Chem 2011; 46:1343-7. [DOI: 10.1016/j.ejmech.2011.01.057] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2010] [Revised: 01/26/2011] [Accepted: 01/26/2011] [Indexed: 11/30/2022]
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17
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Nissen F, Richard V, Alayrac C, Witulski B. Synthesis of β- and γ-carbolines via ruthenium and rhodium catalysed [2+2+2] cycloadditions of yne-ynamides with methylcyanoformate. Chem Commun (Camb) 2011; 47:6656-8. [DOI: 10.1039/c1cc11298h] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Design, synthesis, and biological evaluation of novel N-γ-carboline arylsulfonamides as anticancer agents. Bioorg Med Chem 2010; 18:8478-84. [DOI: 10.1016/j.bmc.2010.10.047] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2010] [Revised: 10/16/2010] [Accepted: 10/19/2010] [Indexed: 11/20/2022]
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19
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Ding S, Shi Z, Jiao N. Pd(II)-Catalyzed Synthesis of Carbolines by Iminoannulation of Internal Alkynes via Direct C−H Bond Cleavage Using Dioxygen as Oxidant. Org Lett 2010; 12:1540-3. [DOI: 10.1021/ol100272s] [Citation(s) in RCA: 117] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Shengtao Ding
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Xue Yuan Road 38, Beijing 100191, China, and State Key Laboratory of Organometallic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
| | - Zhuangzhi Shi
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Xue Yuan Road 38, Beijing 100191, China, and State Key Laboratory of Organometallic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
| | - Ning Jiao
- State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Xue Yuan Road 38, Beijing 100191, China, and State Key Laboratory of Organometallic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
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