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Shirazi SHUA, Rizvi F, Sherwani ZA, Siddiqui AR, Ul-Haq Z, Siddiqui H, Choudhary MI, Ahmad MS. Synthesis of isoniazid derivatives and evaluation of their α-chymotrypsin inhibitory effect through in silico guided in vitro studies. Biochem Biophys Res Commun 2024; 735:150805. [PMID: 39426135 DOI: 10.1016/j.bbrc.2024.150805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 10/08/2024] [Accepted: 10/08/2024] [Indexed: 10/21/2024]
Abstract
Alpha-chymotrypsin is a serine protease. Its overexpression is responsible for several ailments, such as chronic obstructive pulmonary disease, autoimmune diseases, pancreatitis, and colon cancers. Therefore, the discovery of potent α-chymotrypsin inhibitors is essential for the treatment of the aforementioned ailments. In this study, we identified new α-chymotrypsin inhibitors through a systematic approach, utilizing the in silico and in vivo studies to predict and confirm the inhibitory potential of isoniazid derivatives. During this study, six compounds 2, 3, 4, 7, 9, and 10 were shortlisted from ten isoniazid derivatives through in silico screening. After that, MD simulations were performed for these compounds. The shortlisted compounds were evaluated through an in vitro α-chymotrypsin inhibitory assay. Compounds 9 and 10 showed a potent inhibition against α-chymotrypsin. The identified compounds or their derivatives can be further investigated as drug leads against the ailments caused by α-chymotrypsin and related serine proteases.
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Affiliation(s)
- Syeda Hoor-Ul-Ain Shirazi
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Fazila Rizvi
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Zaid Anis Sherwani
- Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Ali Raza Siddiqui
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Zaheer Ul-Haq
- Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Hina Siddiqui
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - M Iqbal Choudhary
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan; Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Malik Shoaib Ahmad
- Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan.
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2
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Guo WY, Fu YX, Mei LC, Chen Z, Zhang ZY, Wang F, Yang WC, Liu G, Yang GF. Rational Design of Esterase-Insensitive Fluorogenic Probes for In Vivo Imaging. ACS Sens 2023; 8:2041-2049. [PMID: 37146071 DOI: 10.1021/acssensors.3c00264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Small-molecule fluorogenic probes are indispensable tools for performing research in biomedical fields and chemical biology. Although numerous cleavable fluorogenic probes have been developed to investigate various bioanalytes, few of them meet the baseline requirements for in vivo biosensing for disease diagnosis due to their insufficient specificity resulted from the remarkable esterase interferences. To address this critical issue, we developed a general approach called fragment-based fluorogenic probe discovery (FBFPD) to design esterase-insensitive probes for in vitro and in vivo applications. With the designed esterase-insensitive fluorogenic probe, we successfully achieved light-up in vivo imaging and quantitative analysis of cysteine. This strategy was further extended to design highly specific fluorogenic probes for other representative targets, sulfites, and chymotrypsin. The present study expands the bioanalytical toolboxes available and offers a promising platform to develop esterase-insensitive cleavable fluorogenic probes for in vivo biosensing and bioimaging for the early diagnosis of diseases.
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Affiliation(s)
- Wu-Yingzheng Guo
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Yi-Xuan Fu
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Long-Can Mei
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Zhao Chen
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Zi-Ye Zhang
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Fan Wang
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Wen-Chao Yang
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
| | - Guozhen Liu
- School of Medicine, The Chinese University of Hong Kong, Shenzhen 518172, P.R. China
| | - Guang-Fu Yang
- National Key Laboratory of Green Pesticide, Central China Normal University, Wuhan 430079, P.R. China
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3
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Naseem HA, Aziz T, Shah HUR, Ahmad K, Parveen S, Ashfaq M. Rational synthesis and characterization of medicinal phenyl diazenyl-3-hydroxy-1h-inden-1-one azo derivatives and their metal complexes. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129574] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Noro J, Castro TG, Cavaco-Paulo A, Silva C. α-Chymotrypsin catalyses the synthesis of methotrexate oligomers. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.08.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Hue BTB, Nguyen PH, De TQ, Van Hieu M, Jo E, Van Tuan N, Thoa TT, Anh LD, Son NH, La Duc Thanh D, Dupont‐Rouzeyrol M, Grailhe R, Windisch MP. Benzimidazole Derivatives as Novel Zika Virus Inhibitors. ChemMedChem 2020; 15:1453-1463. [DOI: 10.1002/cmdc.202000124] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Bui Thi Buu Hue
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Phuong Hong Nguyen
- Discovery Biology DivisionApplied Molecular Virology LaboratoryInstitut Pasteur Korea 696 Seongnam 13488 Republic of Korea
- Division of Bio-Medical Science and TechnologyUniversity of Science and Technology Daejeon 34141 Republic of Korea
| | - Tran Quang De
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Mai Van Hieu
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Eunji Jo
- Discovery Biology DivisionApplied Molecular Virology LaboratoryInstitut Pasteur Korea 696 Seongnam 13488 Republic of Korea
| | - Nguyen Van Tuan
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Than Thi Thoa
- Discovery Biology DivisionApplied Molecular Virology LaboratoryInstitut Pasteur Korea 696 Seongnam 13488 Republic of Korea
| | - Le Duc Anh
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Nguyen Hoang Son
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | - Danh La Duc Thanh
- Department of ChemistryCollege of Natural SciencesCan Tho University Campus II, 3/2 street Ninh Kieu District Can Tho City Vietnam
| | | | - Regis Grailhe
- Technology Development PlatformInstitut Pasteur Korea 696 Seongnam 13488 Republic of Korea
| | - Marc P. Windisch
- Discovery Biology DivisionApplied Molecular Virology LaboratoryInstitut Pasteur Korea 696 Seongnam 13488 Republic of Korea
- Division of Bio-Medical Science and TechnologyUniversity of Science and Technology Daejeon 34141 Republic of Korea
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6
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TLC-Bioautography as a fast and cheap screening method for the detection of α-chymotrypsin inhibitors in crude plant extracts. J Biotechnol 2020; 313:11-17. [DOI: 10.1016/j.jbiotec.2020.02.016] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 02/28/2020] [Accepted: 02/28/2020] [Indexed: 01/22/2023]
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7
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Das S, Mallick S, De Sarkar S. Cobalt-Catalyzed Sustainable Synthesis of Benzimidazoles by Redox-Economical Coupling of o-Nitroanilines and Alcohols. J Org Chem 2019; 84:12111-12119. [PMID: 31429563 DOI: 10.1021/acs.joc.9b02090] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Sanju Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741246, West Bengal, India
| | - Samrat Mallick
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741246, West Bengal, India
| | - Suman De Sarkar
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur 741246, West Bengal, India
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Dawood DH, Abbas EMH, Farghaly TA, Ali MM, Ibrahim MF. ZnO Nanoparticles Catalyst in the Synthesis of Bioactive Fused Pyrimidines as Anti-breast Cancer Agents Targeting VEGFR-2. Med Chem 2019; 15:277-286. [PMID: 30207239 DOI: 10.2174/1573406414666180912113226] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 08/17/2018] [Accepted: 08/22/2018] [Indexed: 11/22/2022]
Abstract
BACKGROUND Pyrimidines emerged as a remarkable class of heterocyclic compounds that have reinforced the pharmaceutical chemistry with various bioactive antitumor agents. Moreover, pyrimidine scaffold displayed VEGFR-2 inhibitory activity. Also, nano-sized catalysts are used in organic reactions in order to speed up the catalytic process. OBJECTIVE We were interested herein to synthesize a new series of fused pyrimidines using ZnO(NPs) to investigate their antitumor efficiency against breast MCF7 cancer and their VEGFR- 2 inhibition properties. METHOD A simple and efficient method for the synthesis of fused pyrimidines was developed using zinc oxide nanoparticles ZnO(NPs) in refluxing ethanol. RESULTS The proposed structures of all new fused pyrimidines are in agreement with their spectral data. Antitumor evaluation of newly fused pyrimidine derivatives against breast MCF-7 cancer was performed. It was apparent that the 2-phenylpyrazolo[1,5-a]pyrimidine derivatives 9a (IC50 = 9.12±1.16 µg/ml), 9c (IC50 = 9.10±1.07 µg/ml) and 9d (IC50 = 9.60±1.22 µg/ml) exhibited equipotent antitumor activity as Tamoxifen (IC50 = 9.11±0.90 µg/ml). Also, the inhibitory activity of the novel fused pyrimidine derivatives on VEGFR-2 as well as Tamoxifen was determined using breast cancer cell line MCF-7. The data was obvious that 2-phenylpyrazolo[1,5-a]pyrimidine derivatives 9a, 9c and 9d exhibited noticeable VEGFR-2 inhibitory effect with % inhibition ranging from 80-84 % versus Tamoxifen 93.5%. CONCLUSION We succeeded in this context to synthesize new fused pyrimidines using ZnO(NPs) as anti-breast cancer agents targeting VEGFR-2.
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Affiliation(s)
- Dina H Dawood
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Division, National Research Center, 33 El Bohouth St.( former El Tahrir St.) Dokki, Giza, P.O. Box 12622, Egypt
| | - Eman M H Abbas
- Chemistry of Natural and Microbial Products Department, Pharmaceutical and Drug Industries Research Division, National Research Center, 33 El Bohouth St.( former El Tahrir St.) Dokki, Giza, P.O. Box 12622, Egypt
| | - Thoraya A Farghaly
- Department of Chemistry, Faculty of Science, Cairo University, Giza, 12613, Egypt.,Department of Chemistry, Faculty of Applied Science, Umm Al-Qura University, Makkah Almukkarramah, 21955, Saudi Arabia
| | - Mamdouh M Ali
- Biochemistry Department, Genetic Engineering and Biotechnology Research Division, National Research Center, 33 El Bohouth St. (former El Tahrir St.) Dokki, Giza, P.O. Box 12622, Egypt
| | - Mohammed F Ibrahim
- Biochemistry Department, Genetic Engineering and Biotechnology Research Division, National Research Center, 33 El Bohouth St. (former El Tahrir St.) Dokki, Giza, P.O. Box 12622, Egypt
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9
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Morita H, Thi Buu Hue B, Minh Nguyen H, Van Hieu M, La Duc Thanh D, Hoang Son N, Quang De T. Facile Sodium Metabisulfite Mediated Synthesis of 1,2-Disubstituted Benzimidazoles and Cytotoxicity Evaluation. HETEROCYCLES 2019. [DOI: 10.3987/com-19-14071] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Mu S, Xu Y, Zhang Y, Guo X, Li J, Wang Y, Liu X, Zhang H. A non-peptide NIR fluorescent probe for detection of chymotrypsin and its imaging application. J Mater Chem B 2019. [DOI: 10.1039/c9tb00085b] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
A novel non-peptide NIR fluorescent probe for the detection of chymotrypsin and its imaging application.
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Affiliation(s)
- Shuai Mu
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
| | - Yixuan Xu
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
| | - Yintang Zhang
- Henan Key Laboratory of Biomolecular Recognition and Sensing
- College of Chemistry and Chemical Engineering
- Shangqiu Normal University
- Shangqiu 476000
- China
| | - Xiumei Guo
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
| | - Jian Li
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
| | - Yali Wang
- Key Laboratory of Traditional Chinese medicine quality and standard
- Gansu University of Chinese Medicine
- Lanzhou
- China
| | - Xiaoyan Liu
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
| | - Haixia Zhang
- State Key Laboratory of Applied Organic Chemistry
- Key Laboratory of Nonferrous Metals Chemistry and Resources Utilization of Gansu Province and College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou 730000
- China
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11
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Wu L, Yang SH, Xiong H, Yang JQ, Guo J, Yang WC, Yang GF. Nonpeptide-Based Small-Molecule Probe for Fluorogenic and Chromogenic Detection of Chymotrypsin. Anal Chem 2017; 89:3687-3693. [DOI: 10.1021/acs.analchem.6b05115] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Lei Wu
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Shu-Hou Yang
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Hao Xiong
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Jia-Qian Yang
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Jun Guo
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Wen-Chao Yang
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
| | - Guang-Fu Yang
- Key
Laboratory of Pesticide and Chemical Biology of Ministry of Education,
College of Chemistry, Central China Normal University, Wuhan 430079, P.R. China
- Collaborative Innovation Center of Chemical Science
and Engineering, Tianjin 30071, P.R. China
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12
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Akhtar W, Khan MF, Verma G, Shaquiquzzaman M, Rizvi MA, Mehdi SH, Akhter M, Alam MM. Therapeutic evolution of benzimidazole derivatives in the last quinquennial period. Eur J Med Chem 2016; 126:705-753. [PMID: 27951484 DOI: 10.1016/j.ejmech.2016.12.010] [Citation(s) in RCA: 129] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Revised: 11/10/2016] [Accepted: 12/03/2016] [Indexed: 12/21/2022]
Abstract
Benzimidazole, a fused heterocycle bearing benzene and imidazole has gained considerable attention in the field of contemporary medicinal chemistry. The moiety is of substantial importance because of its wide array of pharmacological activities. This nitrogen containing heterocycle is a part of a number of therapeutically used agents. Moreover, a number of patents concerning this moiety in the last few years further highlight its worth. The present review covers the recent work published by scientists across the globe during last five years.
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Affiliation(s)
- Wasim Akhtar
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India
| | - Mohemmed Faraz Khan
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India
| | - Garima Verma
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India
| | - M Shaquiquzzaman
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India
| | - M A Rizvi
- Department of Biosciences, Jamia Millia Islamia, New Delhi 110025, India
| | - Syed Hassan Mehdi
- Department of Biosciences, Jamia Millia Islamia, New Delhi 110025, India
| | - Mymoona Akhter
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India
| | - M Mumtaz Alam
- Drug Design and Medicinal Chemistry Lab, Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Jamia Hamdard, New Delhi 110062, India.
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