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Lazic J, Filipovic V, Pantelic L, Milovanovic J, Vojnovic S, Nikodinovic-Runic J. Late-stage diversification of bacterial natural products through biocatalysis. Front Bioeng Biotechnol 2024; 12:1351583. [PMID: 38807651 PMCID: PMC11130421 DOI: 10.3389/fbioe.2024.1351583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 04/18/2024] [Indexed: 05/30/2024] Open
Abstract
Bacterial natural products (BNPs) are very important sources of leads for drug development and chemical novelty. The possibility to perform late-stage diversification of BNPs using biocatalysis is an attractive alternative route other than total chemical synthesis or metal complexation reactions. Although biocatalysis is gaining popularity as a green chemistry methodology, a vast majority of orphan sequenced genomic data related to metabolic pathways for BNP biosynthesis and its tailoring enzymes are underexplored. In this review, we report a systematic overview of biotransformations of 21 molecules, which include derivatization by halogenation, esterification, reduction, oxidation, alkylation and nitration reactions, as well as degradation products as their sub-derivatives. These BNPs were grouped based on their biological activities into antibacterial (5), antifungal (5), anticancer (5), immunosuppressive (2) and quorum sensing modulating (4) compounds. This study summarized 73 derivatives and 16 degradation sub-derivatives originating from 12 BNPs. The highest number of biocatalytic reactions was observed for drugs that are already in clinical use: 28 reactions for the antibacterial drug vancomycin, followed by 18 reactions reported for the immunosuppressive drug rapamycin. The most common biocatalysts include oxidoreductases, transferases, lipases, isomerases and haloperoxidases. This review highlights biocatalytic routes for the late-stage diversification reactions of BNPs, which potentially help to recognize the structural optimizations of bioactive scaffolds for the generation of new biomolecules, eventually leading to drug development.
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Affiliation(s)
- Jelena Lazic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
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2
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Abdula AM, Qarah AF, Alatawi K, Qurban J, Abualnaja MM, Katuah HA, El-Metwaly NM. Design, synthesis, and molecular docking of new phenothiazine incorporated N-Mannich bases as promising antimicrobial agents. Heliyon 2024; 10:e28573. [PMID: 38571594 PMCID: PMC10988045 DOI: 10.1016/j.heliyon.2024.e28573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 03/19/2024] [Accepted: 03/20/2024] [Indexed: 04/05/2024] Open
Abstract
The present work aims to synthesize four series of phenothiazine incorporation Mannich bases. Therefore, 10-methyl-10H-phenothiazine-3-sulfonamide (4) which was subjected to react with some secondary amines and formaldehyde to give the Mannich bases 5a-f, and 6-13. Compound 13 was then subjected to react with some secondary amines and formaldehyde to give the corresponding Mannich bases 14a-f. In total, twenty-two new compounds were synthesized and evaluated for in vitro growth inhibition activity against P. aeruginosa, E. coli, and S. aureus. Among the tested compounds, compounds 3, 5a, 5c, 6, 12, 13, 14d, and 14e exhibited good activity with a MIC value (12.5 μg/mL), compounds 5b, 10, 11, 14a, and 14c exhibited strong activity against the growth of S. aureus with a MIC value (6.25 μg/mL), and compound 14b superior against S. aureus with a MIC value (3.125 μg/mL) compared to drug reference ciprofloxacin with MIC value (2 μg/mL). The molecular docking investigation revealed the presence of many derivatives with high binding affinities and distinct interaction patterns with the target protein. Derivatives 14a-e emerged as the most promising possibilities, displaying the greatest binding energies and a varied variety of interaction types, including hydrogen bonding and pi interactions, over different distances, with derivative 14b exhibiting the highest binding energy at S = -8.3093 kcal/mol. These derivatives displayed superior binding affinities and various interaction mechanisms with the target protein, suggesting that they have great promise as lead compounds for future development into therapeutic medicines.
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Affiliation(s)
- Ahmed M. Abdula
- Department of Chemistry, College of Science, Mustansiriyah University, Baghdad, P.O. Box 14022, Iraq
| | - Ahmad Fawzi Qarah
- Department of Chemistry, College of Science, Taibah University, Madinah, P. O. Box 344, Saudi Arabia
| | - Kahdr Alatawi
- Pharmaceuticals Chemistry Department, Faculty of Clinical Pharmacy, Al-Baha University, Al Baha, 65779, Saudi Arabia
| | - Jihan Qurban
- Department of Chemistry, Collage of Science, Umm Al-Qura University, Makkah, 24230, Saudi Arabia
| | - Matokah M. Abualnaja
- Department of Chemistry, Collage of Science, Umm Al-Qura University, Makkah, 24230, Saudi Arabia
| | - Hanadi A. Katuah
- Department of Chemistry, Collage of Science, Umm Al-Qura University, Makkah, 24230, Saudi Arabia
| | - Nashwa M. El-Metwaly
- Department of Chemistry, Collage of Science, Umm Al-Qura University, Makkah, 24230, Saudi Arabia
- Department of Chemistry, Faculty of Science, Mansoura University, El-Gomhoria Street, 35516, Egypt
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Hassan AY, Abou-Amra ES, El-Sebaey SA. Design and Synthesis of New Series of Chiral Pyrimidine and Purine analogs as COX-2 Inhibitors: Anticancer Screening, Molecular Modelling, and In Silico Studies. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.134930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Billié S, Reversé K, Chambon S, Cachot T, Pierre R, Gerfaud T, Longoni D, Gennari M, Raynard H, Talbot E, Charras K, Bertin D, Joly-Battaglini M, Pedrassi G, Boiteau JG, Cren C, Harris CS. Completion of the impurity profile of lymecycline: Formal identification of impurities E and F. J Pharm Biomed Anal 2022; 220:114993. [PMID: 36007309 DOI: 10.1016/j.jpba.2022.114993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 08/08/2022] [Accepted: 08/08/2022] [Indexed: 10/15/2022]
Abstract
Lymecycline is the drug substance (DS) used in the Galderma drug product Tetralysal® capsules with 7 impurities currently described in the pharmacopeia labelled as A-G. In the current monograph, the structural identity of all impurities except E and F have been formally identified. In this manuscript, through both formal synthesis and preparative chromatography, we are the first group to confirm the structural identity, response factor of Impurity F and conditions which exacerbate the formation of both impurities.
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Affiliation(s)
| | - Kevin Reversé
- Nuvisan France SARL, CS 10287, 06905 Sophia-Antipolis, France
| | | | - Tony Cachot
- Nuvisan France SARL, CS 10287, 06905 Sophia-Antipolis, France
| | - Romain Pierre
- Nuvisan France SARL, CS 10287, 06905 Sophia-Antipolis, France
| | - Thibaud Gerfaud
- Nuvisan France SARL, CS 10287, 06905 Sophia-Antipolis, France
| | - Davide Longoni
- Olon SpA, Strada Rivoltana, Km 6/7, 20053 Rodano, MI, Italy
| | | | | | - Eric Talbot
- Pharmaron Discovery & Early Development, West Hill Innovation Park, Hertford Road, Hoddesdon, Hertfordshire EN11 9FH, UK
| | - Karine Charras
- Laboratoires Galderma SAS, ZI Montdésir, 74540 Alby-sur-Chéran, France
| | - Didier Bertin
- Galderma SA, Av. d'Ouchy 4, 1006 Lausanne, Switzerland
| | | | | | | | - Cécile Cren
- Galderma SA, Av. d'Ouchy 4, 1006 Lausanne, Switzerland
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Synthesis, spectroscopic characterization and Antibacterial screening of some new cefotaxime sodium derivatives. ARAB J CHEM 2019. [DOI: 10.1016/j.arabjc.2014.12.031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Li W, Wang Y, Xu D. Asymmetric synthesis of β-amino ketones by using cinchona alkaloid-based chiral phase transfer catalysts. Org Biomol Chem 2018; 16:8704-8709. [PMID: 30411772 DOI: 10.1039/c8ob02484g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A highly enantioselective nucleophilic addition of ketones to imines catalyzed by chiral phase-transfer catalysts (N-quaternised cinchona alkaloid ammonium salts) has been developed, and the process affords the Mannich reaction products with tertiary stereocenters in good to high yields (up to 95%) with excellent enantioselectivities (up to 97% ee).
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Affiliation(s)
- Weihua Li
- State Key Laboratory Breeding Base of Green Chemistry Synthesis Technology, Key Laboratory of Green Pesticides and Cleaner Production Technology of Zhejiang Province, Zhejiang University of Technology, Hangzhou 310014, China.
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Petrović VP, Simijonović D, Milovanović VM, Petrović ZD. Acetophenone Mannich bases: study of ionic liquid catalysed synthesis and antioxidative potential of products. ROYAL SOCIETY OPEN SCIENCE 2018; 5:181232. [PMID: 30564412 PMCID: PMC6281942 DOI: 10.1098/rsos.181232] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 10/09/2018] [Indexed: 05/15/2023]
Abstract
Three-component Mannich reaction of acetophenone or 4-iodoacetophenone with a variety of substituted anilines and benzaldehyde, catalysed with diethanolammonium chloroacetate, was performed under mild conditions. Mannich bases (MBs), of which five are new, were obtained in good to excellent yields. All compounds were characterized using elemental analysis, NMR and IR. In addition, detailed experimental and simulated UV-Vis spectral characterization of these compounds is presented here for the first time. In vitro antioxidative potential of synthetized MBs was evaluated using 2,2-diphenyl-1-picryl-hydrazyl radical and density functional theory (DFT) thermodynamical study. It was shown that compounds with anisidine moiety express moderate antioxidative activity. Mechanism of the organocatalysed Mannich reaction was thoroughly inspected by means of DFT. The reaction undergoes the hydrogen bonding-assisted mechanism. Moreover, the proposed rate determining step of the overall reaction is water elimination in the process of iminium ion formation. To the extent of our knowledge, this is the first detailed report on the influence of this type of catalyst on the formation of iminium ion, as a crucial intermediate for the whole reaction.
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Affiliation(s)
- Vladimir P. Petrović
- Department of Chemistry, Faculty of Science, University of Kragujevac, Kragujevac 34000, Serbia
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Joshi S, Bilgaiyan P, Pathak A. Synthesis, spectroscopic characterization and antibacterial screening of novel Mannich bases of Ganciclovir. ARAB J CHEM 2017. [DOI: 10.1016/j.arabjc.2013.02.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Roman G. Mannich bases in medicinal chemistry and drug design. Eur J Med Chem 2015; 89:743-816. [PMID: 25462280 PMCID: PMC7115492 DOI: 10.1016/j.ejmech.2014.10.076] [Citation(s) in RCA: 190] [Impact Index Per Article: 21.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Revised: 10/22/2014] [Accepted: 10/23/2014] [Indexed: 01/18/2023]
Abstract
The biological activity of Mannich bases, a structurally heterogeneous class of chemical compounds that are generated from various substrates through the introduction of an aminomethyl function by means of the Mannich reaction, is surveyed, with emphasis on the relationship between structure and biological activity. The review covers extensively the literature reports that have disclosed Mannich bases as anticancer and cytotoxic agents, or compounds with potential antibacterial and antifungal activity in the last decade. The most relevant studies on the activity of Mannich bases as antimycobacterial agents, antimalarials, or antiviral candidates have been included as well. The review contains also a thorough coverage of anticonvulsant, anti-inflammatory, analgesic and antioxidant activities of Mannich bases. In addition, several minor biological activities of Mannich bases, such as their ability to regulate blood pressure or inhibit platelet aggregation, their antiparasitic and anti-ulcer effects, as well as their use as agents for the treatment of mental disorders have been presented. The review gives in the end a brief overview of the potential of Mannich bases as inhibitors of various enzymes or ligands for several receptors.
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Affiliation(s)
- Gheorghe Roman
- Petru Poni Institute of Macromolecular Chemistry, Department of Inorganic Polymers, 41A Aleea Gr. Ghica Vodă, Iaşi 700487, Romania.
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SUBRAMANIAPILLAI SELVAGANESAN. Mannich reaction: A versatile and convenient approach to bioactive skeletons. J CHEM SCI 2013. [DOI: 10.1007/s12039-013-0405-y] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Asymmetric synthesis of β-aryl-β-trifluoromethyl-β-aminoarones via Mannich-type reactions of ketone enolates with chiral aryl CF3-substituted N-tert-butanesulfinyl ketimines. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.04.070] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Sukach VA, Golovach NM, Pirozhenko VV, Rusanov EB, Vovk MV. Convenient enantioselective synthesis of β-trifluoromethyl-β-aminoketones by organocatalytic asymmetric Mannich reaction of aryl trifluoromethyl ketimines with acetone. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.tetasy.2008.02.023] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Baudequin C, Zamfir A, Tsogoeva SB. Highly enantioselective organocatalytic formation of a quaternary carbon center via chiral Brønsted acid catalyzed self-coupling of enamides. Chem Commun (Camb) 2008:4637-9. [DOI: 10.1039/b804477e] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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