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Feng Q, Yang W, Peng Z, Wang G. Recent advances in the synthetic thymidine phosphorylase inhibitors for cancer therapy. Eur J Pharmacol 2022; 934:175319. [DOI: 10.1016/j.ejphar.2022.175319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 09/16/2022] [Accepted: 10/04/2022] [Indexed: 11/03/2022]
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2
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Recent advances in the synthesis of 4′-truncated nucleoside phosphonic acid analogues. Carbohydr Res 2022; 513:108517. [DOI: 10.1016/j.carres.2022.108517] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 01/20/2022] [Accepted: 02/02/2022] [Indexed: 12/30/2022]
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3
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Vagapova LI, Burilov AR, Gazizov AS, Voronina JK, Litvinov IA, Mahrous EM, Virieux D, Pirat JL, Matylitskii KV, Pudovik MA. One-Pot Synthesis of N-(Phosphorylmethyl)Pyrrolidines via Acid-Catalyzed Cascade Elimination/Cyclization/Friedel–Crafts Reaction. Chem Heterocycl Compd (N Y) 2020. [DOI: 10.1007/s10593-020-02697-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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4
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Kozlov M, Komkov A, Losev T, Tyurin A, Dmitrenok A, Zavarzin I, Volkova Y. Flexible Synthesis of Phosphoryl-Substituted Imidazolines, Tetrahydropyrimidines, and Thioamides by Sulfur-Mediated Processes. J Org Chem 2019; 84:11533-11541. [PMID: 31393714 DOI: 10.1021/acs.joc.9b01384] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The solvent-free sulfur-mediated reactions of phosphinic chlorides with alkyl diamines were developed for the practical synthesis of unknown phosphoryl-substituted 4,5-dihydro-1H-imidazoles, 1,4,5,6-tetrahydropyrimidines, and thioamides. Their good tolerance to functional groups, broad substrate scope, and easy scalability were shown. The chemoselective preparation of a variety of phosphoryl-substituted bis(thioamides) was accomplished via the adjustment of a solvent.
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Affiliation(s)
- Mikhail Kozlov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Alexander Komkov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Timofey Losev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Alexey Tyurin
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Andrey Dmitrenok
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Igor Zavarzin
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
| | - Yulia Volkova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences , 47 Leninsky prosp. , 119991 Moscow , Russian Federation
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5
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Dorababu A. Evolution of uracil based thymidine phosphorylase inhibitors, SAR and electronic correlation: revisit. Drug Dev Res 2019. [DOI: 10.1002/ddr.21592] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Atukuri Dorababu
- Department of Studies in ChemistrySRMPP Govt. First Grade College Huvinahadagali Karnataka India
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6
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Kozlov M, Kozlov A, Komkov A, Lyssenko K, Zavarzin I, Volkova Y. Synthesis of Phosphoryl Thioamides
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Three‐Component Reaction of Phosphinic Chlorides with Amines and Sulfur. Adv Synth Catal 2019. [DOI: 10.1002/adsc.201900067] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Mikhail Kozlov
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 47 Leninsky prosp. Moscow 119991 Russian Federation
| | - Andrey Kozlov
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 47 Leninsky prosp. Moscow 119991 Russian Federation
| | - Alexander Komkov
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 47 Leninsky prosp. Moscow 119991 Russian Federation
| | - Konstantin Lyssenko
- A. N. Nesmeyanov Institute of Organoelement CompoundsRussian Academy of Sciences Vavilov str. 28, GSP-1 Moscow 119991 Russian Federation
- Plekhanov Russian University of Economics Stremyanny per. 36 Moscow 117997 Russian Federation. Affiliation a
| | - Igor Zavarzin
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 47 Leninsky prosp. Moscow 119991 Russian Federation
| | - Yulia Volkova
- N. D. Zelinsky Institute of Organic ChemistryRussian Academy of Sciences 47 Leninsky prosp. Moscow 119991 Russian Federation
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7
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Synthesis and structure of new 2-aryl-substituted pyrrolidines containing phosphine oxide group. MENDELEEV COMMUNICATIONS 2018. [DOI: 10.1016/j.mencom.2018.07.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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8
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Pohl R, Poštová Slavětínská L, Eng WS, Keough DT, Guddat LW, Rejman D. Synthesis, conformational studies, and biological properties of phosphonomethoxyethyl derivatives of nucleobases with a locked conformation via a pyrrolidine ring. Org Biomol Chem 2015; 13:4693-705. [PMID: 25798893 DOI: 10.1039/c5ob00097a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Systematic structure-activity studies on a diverse family of nucleoside phosphonic acids has led to the development of potent antiviral drugs such as HPMPC (CidofovirTM), PMEA (AdefovirTM), and PMPA (TenofovirTM), which are used in the treatment of CMV-induced retinitis, hepatitis B, and HIV, respectively. Here, we present the synthesis of a novel class of acyclic phosphonate nucleotides that have a locked conformation via a pyrrolidine ring. NMR analysis of these compounds revealed that the pyrrolidine ring has a constrained conformation when in the cis-form at pD < 10 via hydrogen bonding. Four of these compounds were tested as inhibitors of the human and Plasmodium falciparum 6-oxopurine phosphoribosyltransferases. The most potent has a Ki of 0.6 μM for Plasmodium falciparum HGXPRT.
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Affiliation(s)
- Radek Pohl
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.
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9
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Poštová Slavětínská L, Rejman D, Pohl R. Pyrrolidine nucleotide analogs with a tunable conformation. Beilstein J Org Chem 2014; 10:1967-80. [PMID: 25246956 PMCID: PMC4168946 DOI: 10.3762/bjoc.10.205] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Accepted: 08/05/2014] [Indexed: 01/05/2023] Open
Abstract
Conformational preferences of the pyrrolidine ring in nucleotide analogs 7–14 were investigated by means of NMR and molecular modeling. The effect of the relative configuration of hydroxy and nucleobase substituents as well as the effect of the alkylation or acylation of the pyrrolidine nitrogen atom on the conformation of the pyrrolidine ring were studied. The results of a conformational analysis show that the alkylation/acylation can be effectively used for tuning the pyrrolidine conformation over the whole pseudorotation cycle.
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Affiliation(s)
- Lenka Poštová Slavětínská
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Dominik Rejman
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Radek Pohl
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
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10
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Košiová I, Šimák O, Panova N, Buděšínský M, Petrová M, Rejman D, Liboska R, Páv O, Rosenberg I. Inhibition of human thymidine phosphorylase by conformationally constrained pyrimidine nucleoside phosphonic acids and their “open-structure” isosteres. Eur J Med Chem 2014; 74:145-68. [DOI: 10.1016/j.ejmech.2013.12.026] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2013] [Revised: 12/12/2013] [Accepted: 12/22/2013] [Indexed: 10/25/2022]
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11
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Hernández D, Boto A. Nucleoside Analogues: Synthesis and Biological Properties of Azanucleoside Derivatives. European J Org Chem 2014. [DOI: 10.1002/ejoc.201301731] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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12
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Rodríguez-Rodríguez JA, Quijada FJ, Brieva R, Rebolledo F, Gotor V. Chemoenzymatic synthesis of orthogonally protected (3R,4R)- and (3S,4S)-trans-3-amino-4-hydroxypyrrolidines. Tetrahedron 2013. [DOI: 10.1016/j.tet.2013.04.112] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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13
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Rejman D, Panova N, Klener P, Maswabi B, Pohl R, Rosenberg I. N-phosphonocarbonylpyrrolidine derivatives of guanine: a new class of bi-substrate inhibitors of human purine nucleoside phosphorylase. J Med Chem 2012; 55:1612-21. [PMID: 22264015 DOI: 10.1021/jm201409u] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A complete series of pyrrolidine nucleotides, (3R)- and (3S)-3-(guanin-9-yl)pyrrolidin-1-N-ylcarbonylphosphonic acids and (3S,4R)-, (3R,4S)-, (3S,4S)-, and (3R,4R)-4-(guanin-9-yl)-3-hydroxypyrrolidin-1-N-ylcarbonylphosphonic acids, were synthesized and evaluated as potential inhibitors of purine nucleoside phosphorylase (PNP) isolated from peripheral blood mononuclear cells (PBMCs) and cell lines of myeloid and lymphoid origin. Two compounds, (S)-3-(guanin-9-yl)pyrrolidin-1-N-ylcarbonylphosphonic acid (2a) and (3S,4R)-4-(guanin-9-yl)-3-hydroxypyrrolidin-1-N-ylcarbonylphosphonic acid (6a), were recognized as nanomolar competitive inhibitors of PNP isolated from cell lines with K(i) values within the ranges of 16-100 and 10-24 nM, respectively. The low (MESG)K(i) and (Pi)K(i) values of both compounds for PNP isolated from PBMCs suggest that these compounds could be bisubstrate inhibitors that occupy both the phosphate and nucleoside binding sites of the enzyme.
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Affiliation(s)
- Dominik Rejman
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i. Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.
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14
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Petrová M, Buděšínský M, Klepetářová B, Rosenberg I. 5′-Epimeric 3′-deoxy-3′,4′-didehydronucleoside-5′-C-phosphonates: synthesis and structural assignment by NMR and X-ray analyses. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.04.037] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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15
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Poláková I, Buděšínský M, Točík Z, Rosenberg I. Tetrofuranose nucleoside phosphonic acids: Synthesis and properties. ACTA ACUST UNITED AC 2011. [DOI: 10.1135/cccc2011038] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
New isoelectronic, non-isosteric phosphonate analogues of nucleoside 5′-phosphates featuring the phosphorus moiety directly attached on the sugar ring in the C4′ position are described. The analogues were synthesised by a nucleosidation reaction from tetrofuranosyl phosphonate synthons and silylated nucleobases. The pyrimidine compounds with erythro and threo configuration in both D- and L-series were prepared, and the structures were assigned by NMR spectroscopy. The results of NMR conformational studies show that all calculated conformers have a maximum pucker in the range typical for nucleosides. In all compounds, the S-type conformer is preferred and is more significant in α-D-threo-compounds. Studies on inhibition of thymidine phosphorylase revealed that one of the prepared phosphonic acids was a competitive inhibitor of the enzyme (Ki = 4 μM).
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16
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Rejman D, Pohl R, Dračínský M. The Synthesis and Conformation of Dihydroxypiperidinyl Derivates of Nucleobases as Novel Iminosugar Nucleoside Analogs. European J Org Chem 2011. [DOI: 10.1002/ejoc.201001610] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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