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Probing both sides of the story. Proc Natl Acad Sci U S A 2022; 119:e2212419119. [PMID: 36070345 PMCID: PMC9499575 DOI: 10.1073/pnas.2212419119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
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2
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Gustavsson N, Paulus A, Martinsson I, Engdahl A, Medjoubi K, Klementiev K, Somogyi A, Deierborg T, Borondics F, Gouras GK, Klementieva O. Correlative optical photothermal infrared and X-ray fluorescence for chemical imaging of trace elements and relevant molecular structures directly in neurons. LIGHT, SCIENCE & APPLICATIONS 2021; 10:151. [PMID: 34294676 PMCID: PMC8298485 DOI: 10.1038/s41377-021-00590-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 06/20/2021] [Accepted: 07/05/2021] [Indexed: 06/07/2023]
Abstract
Alzheimer's disease (AD) is the most common cause of dementia, costing about 1% of the global economy. Failures of clinical trials targeting amyloid-β protein (Aβ), a key trigger of AD, have been explained by drug inefficiency regardless of the mechanisms of amyloid neurotoxicity, which are very difficult to address by available technologies. Here, we combine two imaging modalities that stand at opposite ends of the electromagnetic spectrum, and therefore, can be used as complementary tools to assess structural and chemical information directly in a single neuron. Combining label-free super-resolution microspectroscopy for sub-cellular imaging based on novel optical photothermal infrared (O-PTIR) and synchrotron-based X-ray fluorescence (S-XRF) nano-imaging techniques, we capture elemental distribution and fibrillary forms of amyloid-β proteins in the same neurons at an unprecedented resolution. Our results reveal that in primary AD-like neurons, iron clusters co-localize with elevated amyloid β-sheet structures and oxidized lipids. Overall, our O-PTIR/S-XRF results motivate using high-resolution multimodal microspectroscopic approaches to understand the role of molecular structures and trace elements within a single neuronal cell.
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Affiliation(s)
- Nadja Gustavsson
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Agnes Paulus
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
- Experimental Neuroinflammation Lab, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Isak Martinsson
- Experimental Dementia Research, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Anders Engdahl
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Kadda Medjoubi
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | | | - Andrea Somogyi
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | - Tomas Deierborg
- Experimental Neuroinflammation Lab, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Ferenc Borondics
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | - Gunnar K Gouras
- Experimental Dementia Research, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Oxana Klementieva
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden.
- Lund Institute for advanced Neutron and X-ray Science (LINXS), 223 70, Lund, Sweden.
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Application of FTIR-ATR Spectroscopy to Determine the Extent of Lipid Peroxidation in Plasma during Haemodialysis. BIOMED RESEARCH INTERNATIONAL 2015; 2015:245607. [PMID: 25961007 PMCID: PMC4417580 DOI: 10.1155/2015/245607] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2014] [Accepted: 01/29/2015] [Indexed: 11/21/2022]
Abstract
During a haemodialysis (HD), because of the contact of blood with the surface of the dialyser, the immune system becomes activated and reactive oxygen species (ROS) are released into plasma. Particularly exposed to the ROS are lipids and proteins contained in plasma, which undergo peroxidation. The main breakdown product of oxidized lipids is the malondialdehyde (MDA). A common method for measuring the concentration of MDA is a thiobarbituric acid reactive substances (TBARS) method. Despite the formation of MDA in plasma during HD, its concentration decreases because it is removed from the blood in the dialyser. Therefore, this research proposes the Fourier Transform Infrared Attenuated Total Reflectance (FTIR-ATR) spectroscopy, which enables determination of primary peroxidation products. We examined the influence of the amount of hydrogen peroxide added to lipid suspension that was earlier extracted from plasma specimen on lipid peroxidation with use of TBARS and FTIR-ATR methods. Linear correlation between these methods was shown. The proposed method was effective during the evaluation of changes in the extent of lipid peroxidation in plasma during a haemodialysis in sheep. A measurement using the FTIR-ATR showed an increase in plasma lipid peroxidation after 15 and 240 minutes of treatment, while the TBARS concentration was respectively lower.
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Abstract
Atomic force microscopy can be readily combined with complementary instrumental techniques ranging from optical to mass-sensitive methods. This Feature highlights recent advances on hyphenated AFM technology, which enables localized studies and mapping of complementary information at surfaces and interfaces.
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Affiliation(s)
- Alexander Eifert
- Institute of Analytical and Bioanalytical Chemistry, University of Ulm , Albert-Einstein-Allee 11, 89081 Ulm, Germany
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Borges J, Campiña JM, Silva AF. Probing the Contribution of Different Intermolecular Forces to the Adsorption of Spheroproteins onto Hydrophilic Surfaces. J Phys Chem B 2013; 117:16565-76. [DOI: 10.1021/jp409238b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- João Borges
- Centro de Investigação
em Química-Linha 4 (CIQ-L4), Departamento de Química
e Bioquímica, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 687, 4169-007, Porto, Portugal
| | - José M. Campiña
- Centro de Investigação
em Química-Linha 4 (CIQ-L4), Departamento de Química
e Bioquímica, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 687, 4169-007, Porto, Portugal
| | - A. Fernando Silva
- Centro de Investigação
em Química-Linha 4 (CIQ-L4), Departamento de Química
e Bioquímica, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 687, 4169-007, Porto, Portugal
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Kainz B, Oprzeska-Zingrebe EA, Herrera JL. Biomaterial and cellular properties as examined through atomic force microscopy, fluorescence optical microscopies and spectroscopic techniques. Biotechnol J 2013; 9:51-60. [DOI: 10.1002/biot.201300087] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2013] [Revised: 09/23/2013] [Accepted: 10/10/2013] [Indexed: 02/06/2023]
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Whited AM, Park PSH. Atomic force microscopy: a multifaceted tool to study membrane proteins and their interactions with ligands. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2013; 1838:56-68. [PMID: 23603221 DOI: 10.1016/j.bbamem.2013.04.011] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 03/22/2013] [Accepted: 04/09/2013] [Indexed: 01/31/2023]
Abstract
Membrane proteins are embedded in lipid bilayers and facilitate the communication between the external environment and the interior of the cell. This communication is often mediated by the binding of ligands to the membrane protein. Understanding the nature of the interaction between a ligand and a membrane protein is required to both understand the mechanism of action of these proteins and for the development of novel pharmacological drugs. The highly hydrophobic nature of membrane proteins and the requirement of a lipid bilayer for native function have hampered the structural and molecular characterizations of these proteins under physiologically relevant conditions. Atomic force microscopy offers a solution to studying membrane proteins and their interactions with ligands under physiologically relevant conditions and can provide novel insights about the nature of these critical molecular interactions that facilitate cellular communication. In this review, we provide an overview of the atomic force microscopy technique and discuss its application in the study of a variety of questions related to the interaction between a membrane protein and a ligand. This article is part of a Special Issue entitled: Structural and biophysical characterization of membrane protein-ligand binding.
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Affiliation(s)
- Allison M Whited
- Department of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, OH 44106, USA
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Li JJ, Yip CM. Super-resolved FT-IR spectroscopy: Strategies, challenges, and opportunities for membrane biophysics. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2013; 1828:2272-82. [PMID: 23500349 DOI: 10.1016/j.bbamem.2013.02.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2012] [Accepted: 02/25/2013] [Indexed: 01/16/2023]
Abstract
Direct correlation of molecular conformation with local structure is critical to studies of protein- and peptide-membrane interactions, particularly in the context of membrane-facilitated aggregation, and disruption or disordering. Infrared spectroscopy has long been a mainstay for determining molecular conformation, following folding dynamics, and characterizing reactions. While tremendous advances have been made in improving the spectral and temporal resolution of infrared spectroscopy, it has only been with the introduction of scanned-probe techniques that exploit the raster-scanning tip as either a source, scattering tool, or measurement probe that researchers have been able to obtain sub-diffraction limit IR spectra. This review will examine the history of correlated scanned-probe IR spectroscopies, from their inception to their use in studies of molecular aggregates, membrane domains, and cellular structures. The challenges and opportunities that these platforms present for examining dynamic phenomena will be discussed. This article is part of a Special Issue entitled: FTIR in membrane proteins and peptide studies.
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Affiliation(s)
- Jessica J Li
- Department of Chemical Engineering and Applied Chemistry, Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Canada M5S 3E1
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Neubauer D, Scharpf J, Pasquarelli A, Mizaikoff B, Kranz C. Combined in situ atomic force microscopy and infrared attenuated total reflection spectroelectrochemistry. Analyst 2013; 138:6746-52. [DOI: 10.1039/c3an01169k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Picas L, Milhiet PE, Hernández-Borrell J. Atomic force microscopy: a versatile tool to probe the physical and chemical properties of supported membranes at the nanoscale. Chem Phys Lipids 2012. [PMID: 23194897 DOI: 10.1016/j.chemphyslip.2012.10.005] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Atomic force microscopy (AFM) was developed in the 1980s following the invention of its precursor, scanning tunneling microscopy (STM), earlier in the decade. Several modes of operation have evolved, demonstrating the extreme versatility of this method for measuring the physicochemical properties of samples at the nanoscopic scale. AFM has proved an invaluable technique for visualizing the topographic characteristics of phospholipid monolayers and bilayers, such as roughness, height or laterally segregated domains. Implemented modes such as phase imaging have also provided criteria for discriminating the viscoelastic properties of different supported lipid bilayer (SLB) regions. In this review, we focus on the AFM force spectroscopy (FS) mode, which enables determination of the nanomechanical properties of membrane models. The interpretation of force curves is presented, together with newly emerging techniques that provide complementary information on physicochemical properties that may contribute to our understanding of the structure and function of biomembranes. Since AFM is an imaging technique, some basic indications on how real-time AFM imaging is evolving are also presented at the end of this paper.
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Affiliation(s)
- Laura Picas
- Institut Curie, CNRS UMR 144, 26 rue d'Ulm, 75248 Paris, France
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Yin LM, Edwards MA, Li J, Yip CM, Deber CM. Roles of hydrophobicity and charge distribution of cationic antimicrobial peptides in peptide-membrane interactions. J Biol Chem 2012; 287:7738-45. [PMID: 22253439 DOI: 10.1074/jbc.m111.303602] [Citation(s) in RCA: 282] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Cationic antimicrobial peptides (CAPs) occur as important innate immunity agents in many organisms, including humans, and offer a viable alternative to conventional antibiotics, as they physically disrupt the bacterial membranes, leading to membrane lysis and eventually cell death. In this work, we studied the biophysical and microbiological characteristics of designed CAPs varying in hydrophobicity levels and charge distributions by a variety of biophysical and biochemical approaches, including in-tandem atomic force microscopy, attenuated total reflection-FTIR, CD spectroscopy, and SDS-PAGE. Peptide structural properties were correlated with their membrane-disruptive abilities and antimicrobial activities. In bacterial lipid model membranes, a time-dependent increase in aggregated β-strand-type structure in CAPs with relatively high hydrophobicity (such as KKKKKKALFALWLAFLA-NH(2)) was essentially absent in CAPs with lower hydrophobicity (such as KKKKKKAAFAAWAAFAA-NH(2)). Redistribution of positive charges by placing three Lys residues at both termini while maintaining identical sequences minimized self-aggregation above the dimer level. Peptides containing four Leu residues were destructive to mammalian model membranes, whereas those with corresponding Ala residues were not. This finding was mirrored in hemolysis studies in human erythrocytes, where Ala-only peptides displayed virtually no hemolysis up to 320 μM, but the four-Leu peptides induced 40-80% hemolysis at the same concentration range. All peptides studied displayed strong antimicrobial activity against Pseudomonas aeruginosa (minimum inhibitory concentrations of 4-32 μM). The overall findings suggest optimum routes to balancing peptide hydrophobicity and charge distribution that allow efficient penetration and disruption of the bacterial membranes without damage to mammalian (host) membranes.
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Affiliation(s)
- Lois M Yin
- Division of Molecular Structure and Function, Research Institute, Hospital for Sick Children, Toronto M5G 1X8, Canada
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Otero J, Guerrero H, Gonzalez L, Puig-Vidal M. A feedfordward adaptive controller to reduce the imaging time of large-sized biological samples with a SPM-based multiprobe station. SENSORS (BASEL, SWITZERLAND) 2012; 12:686-703. [PMID: 22368491 PMCID: PMC3279235 DOI: 10.3390/s120100686] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2011] [Revised: 01/05/2012] [Accepted: 01/06/2012] [Indexed: 05/31/2023]
Abstract
The time required to image large samples is an important limiting factor in SPM-based systems. In multiprobe setups, especially when working with biological samples, this drawback can make impossible to conduct certain experiments. In this work, we present a feedfordward controller based on bang-bang and adaptive controls. The controls are based in the difference between the maximum speeds that can be used for imaging depending on the flatness of the sample zone. Topographic images of Escherichia coli bacteria samples were acquired using the implemented controllers. Results show that to go faster in the flat zones, rather than using a constant scanning speed for the whole image, speeds up the imaging process of large samples by up to a 4× factor.
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Affiliation(s)
- Jorge Otero
- SIC-BIO, Bioelectronics and Nanobioengineering Group, Department of Electronics, University of Barcelona, Marti i Franques, 1, 08028, Barcelona, Spain; E-Mails: (H.G.); (L.G.); (M.P.-V.)
| | - Hector Guerrero
- SIC-BIO, Bioelectronics and Nanobioengineering Group, Department of Electronics, University of Barcelona, Marti i Franques, 1, 08028, Barcelona, Spain; E-Mails: (H.G.); (L.G.); (M.P.-V.)
| | - Laura Gonzalez
- SIC-BIO, Bioelectronics and Nanobioengineering Group, Department of Electronics, University of Barcelona, Marti i Franques, 1, 08028, Barcelona, Spain; E-Mails: (H.G.); (L.G.); (M.P.-V.)
| | - Manel Puig-Vidal
- SIC-BIO, Bioelectronics and Nanobioengineering Group, Department of Electronics, University of Barcelona, Marti i Franques, 1, 08028, Barcelona, Spain; E-Mails: (H.G.); (L.G.); (M.P.-V.)
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13
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Gözen I, Jesorka A. Instrumental Methods to Characterize Molecular Phospholipid Films on Solid Supports. Anal Chem 2012; 84:822-38. [DOI: 10.1021/ac203126f] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Irep Gözen
- Department of Chemical and Biological
Engineering, Chalmers University of Technology, Kemivägen 10, 41296 Göteborg, Sweden
| | - Aldo Jesorka
- Department of Chemical and Biological
Engineering, Chalmers University of Technology, Kemivägen 10, 41296 Göteborg, Sweden
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Li N, Zhang X, Wang Q, Wang F, Shen P. Biomimetic synthesis of silica hollow spheres using poly (l-lysine) and mechanism research. RSC Adv 2012. [DOI: 10.1039/c2ra00019a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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15
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Yang G, Wong MK, Lin LE, Yip CM. Nucleation and growth of elastin-like peptide fibril multilayers: an in situ atomic force microscopy study. NANOTECHNOLOGY 2011; 22:494018. [PMID: 22101911 DOI: 10.1088/0957-4484/22/49/494018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Controlling how molecules assemble into complex supramolecular architectures requires careful consideration of the subtle inter- and intra-molecular interactions that control their association. This is particularly crucial in the context of assembly at interfaces, where both surface chemistry and structure can play a role in directing structure formation. We report here the results of a study into the self-assembly of the elastin-like peptide EP I on structurally modified highly ordered pyrolytic graphite, including the role of spatial confinement on fibril nucleation and the growth of oriented fibril multilayers. In situ atomic force microscopy performed in fluid and at elevated temperature provided direct evidence of frustrated fibril nuclei and oriented growth of independent fibril domains. These results portend the application of this in situ strategy for studies of the nucleation and growth mechanisms of other fibril- and amyloid-forming proteins.
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Affiliation(s)
- Guocheng Yang
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, M5S 3G9, Canada
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Ferranti P, Mamone G, Picariello G, Addeo F. The “dark side” of β-lactoglobulin: Unedited structural features suggest unexpected functions. J Chromatogr A 2011; 1218:3423-31. [DOI: 10.1016/j.chroma.2011.03.059] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2011] [Revised: 03/24/2011] [Accepted: 03/25/2011] [Indexed: 12/13/2022]
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Unraveling lipid/protein interaction in model lipid bilayers by Atomic Force Microscopy. J Mol Recognit 2011; 24:387-96. [DOI: 10.1002/jmr.1083] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Zhong J. From simple to complex: investigating the effects of lipid composition and phase on the membrane interactions of biomolecules using in situ atomic force microscopy. Integr Biol (Camb) 2011; 3:632-44. [DOI: 10.1039/c0ib00157k] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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