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Poonia RC, Al-Alshaikh HA. Ensemble approach of transfer learning and vision transformer leveraging explainable AI for disease diagnosis: An advancement towards smart healthcare 5.0. Comput Biol Med 2024; 179:108874. [PMID: 39013343 DOI: 10.1016/j.compbiomed.2024.108874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 05/29/2024] [Accepted: 06/18/2024] [Indexed: 07/18/2024]
Abstract
Smart healthcare has advanced the medical industry with the integration of data-driven approaches. Artificial intelligence and machine learning provided remarkable progress, but there is a lack of transparency and interpretability in such applications. To overcome such limitations, explainable AI (EXAI) provided a promising result. This paper applied the EXAI for disease diagnosis in the advancement of smart healthcare. The paper combined the approach of transfer learning, vision transformer, and explainable AI and designed an ensemble approach for prediction of disease and its severity. The result is evaluated on a dataset of Alzheimer's disease. The result analysis compared the performance of transfer learning models with the ensemble model of transfer learning and vision transformer. For training, InceptionV3, VGG19, Resnet50, and Densenet121 transfer learning models were selected for ensembling with vision transformer. The result compares the performance of two models: a transfer learning (TL) model and an ensemble transfer learning (Ensemble TL) model combined with vision transformer (ViT) on ADNI dataset. For the TL model, the accuracy is 58 %, precision is 52 %, recall is 42 %, and the F1-score is 44 %. Whereas, the Ensemble TL model with ViT shows significantly improved performance i.e., 96 % of accuracy, 94 % of precision, 90 % of recall and 92 % of F1-score on ADNI dataset. This shows the efficacy of the ensemble model over transfer learning models.
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Affiliation(s)
- Ramesh Chandra Poonia
- Department of Computer Science, CHRIST (Deemed to be University), Delhi NCR, 201003, India.
| | - Halah A Al-Alshaikh
- Information Systems Department, College of Computer and Information Sciences, Imam Mohammad Ibn Saud Islamic University (IMSIU), 11432, Riyadh, Saudi Arabia.
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2
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Salih AM, Galazzo IB, Gkontra P, Rauseo E, Lee AM, Lekadir K, Radeva P, Petersen SE, Menegaz G. A review of evaluation approaches for explainable AI with applications in cardiology. Artif Intell Rev 2024; 57:240. [PMID: 39132011 PMCID: PMC11315784 DOI: 10.1007/s10462-024-10852-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/03/2024] [Indexed: 08/13/2024]
Abstract
Explainable artificial intelligence (XAI) elucidates the decision-making process of complex AI models and is important in building trust in model predictions. XAI explanations themselves require evaluation as to accuracy and reasonableness and in the context of use of the underlying AI model. This review details the evaluation of XAI in cardiac AI applications and has found that, of the studies examined, 37% evaluated XAI quality using literature results, 11% used clinicians as domain-experts, 11% used proxies or statistical analysis, with the remaining 43% not assessing the XAI used at all. We aim to inspire additional studies within healthcare, urging researchers not only to apply XAI methods but to systematically assess the resulting explanations, as a step towards developing trustworthy and safe models. Supplementary Information The online version contains supplementary material available at 10.1007/s10462-024-10852-w.
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Affiliation(s)
- Ahmed M. Salih
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ UK
- Department of Population Health Sciences, University of Leicester, University Rd, Leicester, LE1 7RH UK
- Department of Computer Science, University of Zakho, Duhok road, Zakho, Kurdistan Iraq
| | - Ilaria Boscolo Galazzo
- Department of Engineering for Innovative Medicine, University of Verona, S. Francesco, 22, 37129 Verona, Italy
| | - Polyxeni Gkontra
- Artificial Intelligence in Medicine Lab (BCN-AIM), Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes, 585, 08007 Barcelona, Spain
| | - Elisa Rauseo
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ UK
| | - Aaron Mark Lee
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ UK
| | - Karim Lekadir
- Artificial Intelligence in Medicine Lab (BCN-AIM), Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes, 585, 08007 Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, Barcelona, Spain
| | - Petia Radeva
- Departament de Matemàtiques i Informàtica, Universitat de Barcelona, Gran Via de les Corts Catalanes, 585, 08007 Barcelona, Spain
| | - Steffen E. Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ UK
- Barts Heart Centre, St Bartholomew’s Hospital, Barts Health NHS Trust, West Smithfield, London, UK
- Health Data Research, London, UK
- Alan Turing Institute, London, UK
| | - Gloria Menegaz
- Department of Engineering for Innovative Medicine, University of Verona, S. Francesco, 22, 37129 Verona, Italy
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Ali S, Akhlaq F, Imran AS, Kastrati Z, Daudpota SM, Moosa M. The enlightening role of explainable artificial intelligence in medical & healthcare domains: A systematic literature review. Comput Biol Med 2023; 166:107555. [PMID: 37806061 DOI: 10.1016/j.compbiomed.2023.107555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Revised: 08/13/2023] [Accepted: 09/28/2023] [Indexed: 10/10/2023]
Abstract
In domains such as medical and healthcare, the interpretability and explainability of machine learning and artificial intelligence systems are crucial for building trust in their results. Errors caused by these systems, such as incorrect diagnoses or treatments, can have severe and even life-threatening consequences for patients. To address this issue, Explainable Artificial Intelligence (XAI) has emerged as a popular area of research, focused on understanding the black-box nature of complex and hard-to-interpret machine learning models. While humans can increase the accuracy of these models through technical expertise, understanding how these models actually function during training can be difficult or even impossible. XAI algorithms such as Local Interpretable Model-Agnostic Explanations (LIME) and SHapley Additive exPlanations (SHAP) can provide explanations for these models, improving trust in their predictions by providing feature importance and increasing confidence in the systems. Many articles have been published that propose solutions to medical problems by using machine learning models alongside XAI algorithms to provide interpretability and explainability. In our study, we identified 454 articles published from 2018-2022 and analyzed 93 of them to explore the use of these techniques in the medical domain.
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Affiliation(s)
- Subhan Ali
- Department of Computer Science, Norwegian University of Science & Technology (NTNU), Gjøvik, 2815, Norway.
| | - Filza Akhlaq
- Department of Computer Science, Sukkur IBA University, Sukkur, 65200, Sindh, Pakistan.
| | - Ali Shariq Imran
- Department of Computer Science, Norwegian University of Science & Technology (NTNU), Gjøvik, 2815, Norway.
| | - Zenun Kastrati
- Department of Informatics, Linnaeus University, Växjö, 351 95, Sweden.
| | | | - Muhammad Moosa
- Department of Computer Science, Norwegian University of Science & Technology (NTNU), Gjøvik, 2815, Norway.
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Li Y, Wang G, Xia Z, Yang W, Sun L. A Dual-Scale Lead-Separated Transformer for ECG Classification. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38082646 DOI: 10.1109/embc40787.2023.10340556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
This work proposes a novel dual-scale lead-separated transformer for the auxiliary diagnosis of 12-lead electrocardiograms (ECGs). We added a new structure design on the basis of traditional ECG signal processing, which led to our model with only 2.6M parameters. The output of the system is the classification results. The fixed 0.5 second ECG segments of each lead are interpreted as independent patches. Together with the reduced dimension signal, patches form a dual-scale representation. As a method to reduce interference from segments with low correlation, a lead-orthogonal attention module is proposed. Experimental results show the effectiveness and scalability of our model.Clinical relevance- Our method improves the scores of clinical 12-lead ECG classification and shows generalization ability. Our model is suitable for single-label and multi-label classification tasks on clinical 12-lead ECG and is compatible with single lead classification. The integration of clinical information can further improve the effectiveness of the model.
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Fu J, Li W, Peng X, Du J, Ouyang A, Wang Q, Chen X. MDRANet: A multiscale dense residual attention network for magnetic resonance and nuclear medicine image fusion. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Denysyuk HV, Pinto RJ, Silva PM, Duarte RP, Marinho FA, Pimenta L, Gouveia AJ, Gonçalves NJ, Coelho PJ, Zdravevski E, Lameski P, Leithardt V, Garcia NM, Pires IM. Algorithms for automated diagnosis of cardiovascular diseases based on ECG data: A comprehensive systematic review. Heliyon 2023; 9:e13601. [PMID: 36852052 PMCID: PMC9958295 DOI: 10.1016/j.heliyon.2023.e13601] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Revised: 01/31/2023] [Accepted: 02/05/2023] [Indexed: 02/12/2023] Open
Abstract
The prevalence of cardiovascular diseases is increasing around the world. However, the technology is evolving and can be monitored with low-cost sensors anywhere at any time. This subject is being researched, and different methods can automatically identify these diseases, helping patients and healthcare professionals with the treatments. This paper presents a systematic review of disease identification, classification, and recognition with ECG sensors. The review was focused on studies published between 2017 and 2022 in different scientific databases, including PubMed Central, Springer, Elsevier, Multidisciplinary Digital Publishing Institute (MDPI), IEEE Xplore, and Frontiers. It results in the quantitative and qualitative analysis of 103 scientific papers. The study demonstrated that different datasets are available online with data related to various diseases. Several ML/DP-based models were identified in the research, where Convolutional Neural Network and Support Vector Machine were the most applied algorithms. This review can allow us to identify the techniques that can be used in a system that promotes the patient's autonomy.
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Key Words
- AI, Artificial Intelligence
- BNN, Binarized Neural Network
- CNN, Concolutional Neural Networks
- Cardiovascular diseases
- DL, Deep Learning
- DNN, Deep Neural Networks
- Diagnosis
- ECG sensors
- ECG, Electrocardiography
- GAN, Generative Adversarial Networks
- GMM, Gaussian Mixture Model
- GNB, Gaussian Naive bayes
- GRU, Gated Recurrent Unit
- LASSO, Least Absolute Shrinkage and Selection Operator
- LDA, Linear Discriminant Analysis
- LR, Linear Regression
- LSTM, Long Short-Term Memory
- ML, Machine Learning
- MLP, Multiplayer Perceptron
- MLR, Multiple Linear Regression
- NLP, Natural Language Processing
- POAF, Postoperative Atrial Fibrillation
- RF, Random Forest
- RNN, Recurrent Neural Network
- SHAP, SHapley Additive exPlanations
- SVM, Support Vector Machine
- Systematic review
- WHO, World Health Organization
- kNN, k-nearest neighbors
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Affiliation(s)
| | - Rui João Pinto
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Pedro Miguel Silva
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Rui Pedro Duarte
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Francisco Alexandre Marinho
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Luís Pimenta
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - António Jorge Gouveia
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Norberto Jorge Gonçalves
- Escola de Ciências e Tecnologia, University of Trás-os-Montes e Alto Douro, Quinta de Prados, 5001-801 Vila Real, Portugal
| | - Paulo Jorge Coelho
- Polytechnic of Leiria, Leiria, Portugal
- Institute for Systems Engineering and Computers at Coimbra (INESC Coimbra), Coimbra, Portugal
| | - Eftim Zdravevski
- Faculty of Computer Science and Engineering, University Ss Cyril and Methodius, 1000 Skopje, Macedonia
| | - Petre Lameski
- Faculty of Computer Science and Engineering, University Ss Cyril and Methodius, 1000 Skopje, Macedonia
| | - Valderi Leithardt
- VALORIZA, Research Center for Endogenous Resources Valorization, Instituto Politécnico de Portalegre, 7300-555 Portalegre, Portugal
- COPELABS, Universidade Lusófona de Humanidades e Tecnologias, Lisboa, Portugal
| | - Nuno M. Garcia
- Instituto de Telecomunicações, Universidade da Beira Interior, 6200-001 Covilhã, Portugal
| | - Ivan Miguel Pires
- Instituto de Telecomunicações, Universidade da Beira Interior, 6200-001 Covilhã, Portugal
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Ayano YM, Schwenker F, Dufera BD, Debelee TG. Interpretable Machine Learning Techniques in ECG-Based Heart Disease Classification: A Systematic Review. Diagnostics (Basel) 2022; 13:111. [PMID: 36611403 PMCID: PMC9818170 DOI: 10.3390/diagnostics13010111] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 12/22/2022] [Accepted: 12/23/2022] [Indexed: 12/31/2022] Open
Abstract
Heart disease is one of the leading causes of mortality throughout the world. Among the different heart diagnosis techniques, an electrocardiogram (ECG) is the least expensive non-invasive procedure. However, the following are challenges: the scarcity of medical experts, the complexity of ECG interpretations, the manifestation similarities of heart disease in ECG signals, and heart disease comorbidity. Machine learning algorithms are viable alternatives to the traditional diagnoses of heart disease from ECG signals. However, the black box nature of complex machine learning algorithms and the difficulty in explaining a model's outcomes are obstacles for medical practitioners in having confidence in machine learning models. This observation paves the way for interpretable machine learning (IML) models as diagnostic tools that can build a physician's trust and provide evidence-based diagnoses. Therefore, in this systematic literature review, we studied and analyzed the research landscape in interpretable machine learning techniques by focusing on heart disease diagnosis from an ECG signal. In this regard, the contribution of our work is manifold; first, we present an elaborate discussion on interpretable machine learning techniques. In addition, we identify and characterize ECG signal recording datasets that are readily available for machine learning-based tasks. Furthermore, we identify the progress that has been achieved in ECG signal interpretation using IML techniques. Finally, we discuss the limitations and challenges of IML techniques in interpreting ECG signals.
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Affiliation(s)
| | | | - Bisrat Derebssa Dufera
- Addis Ababa Institute of Technology, Addis Ababa University, Addis Ababa 11760, Ethiopia
| | - Taye Girma Debelee
- Ethiopian Artificial Intelligence Institute, Addis Ababa 40782, Ethiopia
- College of Electrical and Computer Engineering, Addis Ababa Science and Technology University, Addis Ababa 16417, Ethiopia
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Hammad M, Chelloug SA, Alkanhel R, Prakash AJ, Muthanna A, Elgendy IA, Pławiak P. Automated Detection of Myocardial Infarction and Heart Conduction Disorders Based on Feature Selection and a Deep Learning Model. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22176503. [PMID: 36080960 PMCID: PMC9460171 DOI: 10.3390/s22176503] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 08/23/2022] [Accepted: 08/27/2022] [Indexed: 05/09/2023]
Abstract
An electrocardiogram (ECG) is an essential piece of medical equipment that helps diagnose various heart-related conditions in patients. An automated diagnostic tool is required to detect significant episodes in long-term ECG records. It is a very challenging task for cardiologists to analyze long-term ECG records in a short time. Therefore, a computer-based diagnosis tool is required to identify crucial episodes. Myocardial infarction (MI) and conduction disorders (CDs), sometimes known as heart blocks, are medical diseases that occur when a coronary artery becomes fully or suddenly stopped or when blood flow in these arteries slows dramatically. As a result, several researchers have utilized deep learning methods for MI and CD detection. However, there are one or more of the following challenges when using deep learning algorithms: (i) struggles with real-life data, (ii) the time after the training phase also requires high processing power, (iii) they are very computationally expensive, requiring large amounts of memory and computational resources, and it is not easy to transfer them to other problems, (iv) they are hard to describe and are not completely understood (black box), and (v) most of the literature is based on the MIT-BIH or PTB databases, which do not cover most of the crucial arrhythmias. This paper proposes a new deep learning approach based on machine learning for detecting MI and CDs using large PTB-XL ECG data. First, all challenging issues of these heart signals have been considered, as the signal data are from different datasets and the data are filtered. After that, the MI and CD signals are fed to the deep learning model to extract the deep features. In addition, a new custom activation function is proposed, which has fast convergence to the regular activation functions. Later, these features are fed to an external classifier, such as a support vector machine (SVM), for detection. The efficiency of the proposed method is demonstrated by the experimental findings, which show that it improves satisfactorily with an overall accuracy of 99.20% when using a CNN for extracting the features with an SVM classifier.
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Affiliation(s)
- Mohamed Hammad
- Department of Information Technology, Faculty of Computers and Information, Menoufia University, Shibin El Kom 32511, Egypt or
| | - Samia Allaoua Chelloug
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
- Correspondence: (S.A.C.); (P.P.)
| | - Reem Alkanhel
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Allam Jaya Prakash
- Department of Electronics and Communication, National Institute of Technology Rourkela, Rourkela 769008, India
| | - Ammar Muthanna
- Department of Applied Probability and Informatics, Peoples’ Friendship University of Russia (RUDN University), 117198 Moscow, Russia
| | - Ibrahim A. Elgendy
- Department of Computer Science, Faculty of Computers and Information, Menoufia University, Shibin El Kom 32511, Egypt
| | - Paweł Pławiak
- Department of Computer Science, Faculty of Computer Science and Telecommunications, Cracow University of Technology, Warszawska 24, 31-155 Krakow, Poland
- Institute of Theoretical and Applied Informatics, Polish Academy of Sciences, Baltycka 5, 44-100 Gliwice, Poland
- Correspondence: (S.A.C.); (P.P.)
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Rahman A, Hossain MS, Muhammad G, Kundu D, Debnath T, Rahman M, Khan MSI, Tiwari P, Band SS. Federated learning-based AI approaches in smart healthcare: concepts, taxonomies, challenges and open issues. CLUSTER COMPUTING 2022; 26:1-41. [PMID: 35996680 PMCID: PMC9385101 DOI: 10.1007/s10586-022-03658-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 05/10/2022] [Accepted: 06/17/2022] [Indexed: 06/15/2023]
Abstract
Federated Learning (FL), Artificial Intelligence (AI), and Explainable Artificial Intelligence (XAI) are the most trending and exciting technology in the intelligent healthcare field. Traditionally, the healthcare system works based on centralized agents sharing their raw data. Therefore, huge vulnerabilities and challenges are still existing in this system. However, integrating with AI, the system would be multiple agent collaborators who are capable of communicating with their desired host efficiently. Again, FL is another interesting feature, which works decentralized manner; it maintains the communication based on a model in the preferred system without transferring the raw data. The combination of FL, AI, and XAI techniques can be capable of minimizing several limitations and challenges in the healthcare system. This paper presents a complete analysis of FL using AI for smart healthcare applications. Initially, we discuss contemporary concepts of emerging technologies such as FL, AI, XAI, and the healthcare system. We integrate and classify the FL-AI with healthcare technologies in different domains. Further, we address the existing problems, including security, privacy, stability, and reliability in the healthcare field. In addition, we guide the readers to solving strategies of healthcare using FL and AI. Finally, we address extensive research areas as well as future potential prospects regarding FL-based AI research in the healthcare management system.
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Affiliation(s)
- Anichur Rahman
- Present Address: Department of Computer Science and Engineering, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka Bangladesh
- Department of Computer Science and Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Md. Sazzad Hossain
- Department of Computer Science and Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Ghulam Muhammad
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Dipanjali Kundu
- Present Address: Department of Computer Science and Engineering, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka Bangladesh
| | - Tanoy Debnath
- Department of Computer Science and Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Muaz Rahman
- Present Address: Department of Computer Science and Engineering, National Institute of Textile Engineering and Research (NITER), Constituent Institute of the University of Dhaka, Savar, Dhaka Bangladesh
| | - Md. Saikat Islam Khan
- Department of Computer Science and Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
| | - Prayag Tiwari
- Department of Computer Science, Aalto University, Espoo, Finland
| | - Shahab S. Band
- Future Technology Research Center, National Yunlin University of Science and Technology, 123 University Road, Section 3, Douliou, Yunlin, 64002 Taiwan
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Agrawal A, Chauhan A, Shetty MK, P GM, Gupta MD, Gupta A. ECG-iCOVIDNet: Interpretable AI model to identify changes in the ECG signals of post-COVID subjects. Comput Biol Med 2022; 146:105540. [PMID: 35533456 PMCID: PMC9055384 DOI: 10.1016/j.compbiomed.2022.105540] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 03/26/2022] [Accepted: 04/15/2022] [Indexed: 12/16/2022]
Abstract
OBJECTIVE Studies showed that many COVID-19 survivors develop sub-clinical to clinical heart damage, even if subjects did not have underlying heart disease before COVID. Since Electrocardiogram (ECG) is a reliable technique for cardiovascular disease diagnosis, this study analyzes the 12-lead ECG recordings of healthy and post-COVID (COVID-recovered) subjects to ascertain ECG changes after suffering from COVID-19. METHOD We propose a shallow 1-D convolutional neural network (CNN) deep learning architecture, namely ECG-iCOVIDNet, to distinguish ECG data of post-COVID subjects and healthy subjects. Further, we employed ShAP technique to interpret ECG segments that are highlighted by the CNN model for the classification of ECG recordings into healthy and post-COVID subjects. RESULTS ECG data of 427 healthy and 105 post-COVID subjects were analyzed. Results show that the proposed ECG-iCOVIDNet model could classify the ECG recordings of healthy and post-COVID subjects better than the state-of-the-art deep learning models. The proposed model yields an F1-score of 100%. CONCLUSION So far, we have not come across any other study with an in-depth ECG signal analysis of the COVID-recovered subjects. In this study, it is shown that the shallow ECG-iCOVIDNet CNN model performed good for distinguishing ECG signals of COVID-recovered subjects from those of healthy subjects. In line with the literature, this study confirms changes in the ECG signals of COVID-recovered patients that could be captured by the proposed CNN model. Successful deployment of such systems can help the doctors identify the changes in the ECG of the post-COVID subjects on time that can save many lives.
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Affiliation(s)
| | | | | | - Girish M. P
- Department of Cardiology, GIPMER, Delhi, India
| | | | - Anubha Gupta
- SBILab, Department of ECE, IIIT-Delhi, Delhi, India,Corresponding author
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Gupta R, Gehlot S, Gupta A. C-NMC: B-lineage acute lymphoblastic leukaemia: A blood cancer dataset. Med Eng Phys 2022; 103:103793. [PMID: 35500994 DOI: 10.1016/j.medengphy.2022.103793] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 03/04/2022] [Accepted: 03/24/2022] [Indexed: 10/18/2022]
Abstract
Development of computer-aided cancer diagnostic tools is an active research area owing to the advancements in deep-learning domain. Such technological solutions provide affordable and easily deployable diagnostic tools. Leukaemia, or blood cancer, is one of the leading cancers causing more than 0.3 million deaths every year. In order to aid the development of such an AI-enabled tool, we collected and curated a microscopic image dataset, namely C-NMC, of more than 15000 cancer cell images at a very high resolution of B-Lineage Acute Lymphoblastic Leukaemia (B-ALL). The dataset is prepared at the subject-level and contains images of both healthy and cancer patients. So far, this is the largest (as well as curated) dataset on B-ALL cancer in the public domain. C-NMC is available at The Cancer Imaging Archive (TCIA), USA and can be helpful for the research community worldwide for the development of B-ALL cancer diagnostic tools. This dataset was utilized in an international medical imaging challenge held at ISBI 2019 conference in Venice, Italy. In this paper, we present a detailed description and challenges of this dataset. We also present benchmarking results of all the methods applied so far on this dataset.
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Affiliation(s)
- Ritu Gupta
- Laboratory Oncology Unit, Dr. B.R.A.IRCH, AIIMS, New Delhi, India.
| | - Shiv Gehlot
- SBILab, Department of ECE, IIIT-Delhi, Delhi, India
| | - Anubha Gupta
- SBILab, Department of ECE, IIIT-Delhi, Delhi, India.
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