1
|
Salih AM, Galazzo IB, Raisi-Estabragh Z, Petersen SE, Menegaz G, Radeva P. Characterizing the Contribution of Dependent Features in XAI Methods. IEEE J Biomed Health Inform 2024; PP:1-8. [PMID: 38696291 DOI: 10.1109/jbhi.2024.3395289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
Explainable Artificial Intelligence (XAI) provides tools to help understanding how AI models work and reach a particular decision or outcome. It helps to increase the interpretability of models and makes them more trustworthy and transparent. In this context, many XAI methods have been proposed to make black-box and complex models more digestible from a human perspective. However, one of the main issues that XAI methods have to face especially when dealing with a high number of features is the presence of multicollinearity, which casts shadows on the robustness of the XAI outcomes, such as the ranking of informative features. Most of the current XAI methods either do not consider the collinearity or assume the features are independent which, in general, is not necessarily true. Here, we propose a simple, yet useful, proxy that modifies the outcome of any XAI feature ranking method allowing to account for the dependency among the features, and to reveal their impact on the outcome. The proposed method was applied to SHAP, as an example of XAI method which assume that the features are independent. For this purpose, several models were exploited for a well-known classification task (males versus females) using nine cardiac phenotypes extracted from cardiac magnetic resonance imaging as features. Principal component analysis and biological plausibility were employed to validate the proposed method. Our results showed that the proposed proxy could lead to a more robust list of informative features compared to the original SHAP in presence of collinearity.
Collapse
|
2
|
Fraioli F, Albert N, Boellaard R, Galazzo IB, Brendel M, Buvat I, Castellaro M, Cecchin D, Fernandez PA, Guedj E, Hammers A, Kaplar Z, Morbelli S, Papp L, Shi K, Tolboom N, Traub-Weidinger T, Verger A, Van Weehaeghe D, Yakushev I, Barthel H. Perspectives of the European Association of Nuclear Medicine on the role of artificial intelligence (AI) in molecular brain imaging. Eur J Nucl Med Mol Imaging 2024; 51:1007-1011. [PMID: 38097746 DOI: 10.1007/s00259-023-06553-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Affiliation(s)
- Francesco Fraioli
- Institute of Nuclear Medicine, University College London Hospitals, 5Th Floor UCH, 235 Euston Rd, London, NW1 2BU, UK.
| | - Nathalie Albert
- Department of Nuclear Medicine, Ludwig-Maximilians-University of Munich, Munich, Germany
| | - Ronald Boellaard
- Department of Radiology and Nuclear Medicine, Amsterdam UMC, Location VUmc, Amsterdam, The Netherlands
| | | | - Matthias Brendel
- Department of Nuclear Medicine, Ludwig-Maximilians-University of Munich, Munich, Germany
| | - Irene Buvat
- Institut Curie - Inserm Laboratory of Translational Imaging in Oncology, Paris, France
| | - Marco Castellaro
- Department of Information Engineering, University-Hospital of Padova, Padua, Italy
| | - Diego Cecchin
- Nuclear Medicine Unit, Department of Medicine - DIMED, University-Hospital of Padova, Padua, Italy
| | - Pablo Aguiar Fernandez
- CIMUS, Universidade Santiago de Compostela & Nuclear Medicine Dept, Univ. Hospital IDIS, Santiago de Compostela, Spain
| | - Eric Guedj
- Département de Médecine Nucléaire, Aix Marseille Univ, APHM, CNRS, Centrale Marseille, Institut Fresnel, Hôpital de La Timone, CERIMED, Marseille, France
| | - Alexander Hammers
- School of Biomedical Engineering and Imaging Sciences, King's College London St Thomas' Hospital, London, SE1 7EH, UK
| | - Zoltan Kaplar
- Institute of Nuclear Medicine, University College London Hospitals, 5Th Floor UCH, 235 Euston Rd, London, NW1 2BU, UK
| | - Silvia Morbelli
- Nuclear Medicine Unit, AOU Città Della Salute E Della Scienza Di Torino, University of Turin, Turin, Italy
| | - Laszlo Papp
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Kuangyu Shi
- Lab for Artificial Intelligence and Translational Theranostic, Dept. of Nuclear Medicine, University of Bern, Bern, Switzerland
| | - Nelleke Tolboom
- Department of Radiology and Nuclear Medicine, Utrecht University Medical Center, Utrecht, The Netherlands
| | - Tatjana Traub-Weidinger
- Division of Nuclear Medicine, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria
| | - Antoine Verger
- Department of Nuclear Medicine and Nancyclotep Imaging Platform, CHRU Nancy, Université de Lorraine, IADI, INSERM U1254, Nancy, France
| | - Donatienne Van Weehaeghe
- Department of Radiology and Nuclear Medicine, Ghent University Hospital, C. Heymanslaan 10, 9000, Ghent, Belgium
| | - Igor Yakushev
- Department of Nuclear Medicine, School of Medicine, Technical University of Munich, Munich, Germany
| | - Henryk Barthel
- Department of Nuclear Medicine, Leipzig University Medical Centre, Leipzig, Germany
| |
Collapse
|
3
|
Pizzini FB, Boscolo Galazzo I, Natale V, Ribaldi F, Scheffler M, Caranci F, Lovblad KO, Menegaz G, Frisoni GB, Gunther M. Insights into single-timepoint ASL hemodynamics: what visual assessment and spatial coefficient of variation can tell. Radiol Med 2024; 129:467-477. [PMID: 38329703 PMCID: PMC10943156 DOI: 10.1007/s11547-024-01777-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Accepted: 01/03/2024] [Indexed: 02/09/2024]
Abstract
PURPOSE Arterial spin labeling (ASL) represents a noninvasive perfusion biomarker, and, in the study of nonvascular disease, the use of the single-timepoint ASL technique is recommended. However, the obtained cerebral blood flow (CBF) maps may be highly influenced by delayed arterial transit time (ATT). Our aim was to assess the complexity of hemodynamic information of single-timepoint CBF maps using a new visual scale and comparing it with an ATT proxy, the "coefficient of spatial variation" (sCoV). MATERIAL AND METHODS Individual CBF maps were estimated in a memory clinic population (mild cognitive impairment, dementia and cognitively unimpaired controls) and classified into four levels of delayed perfusion based on a visual rating scale. Calculated measures included global/regional sCoVs and common CBF statistics, as mean, median and standard deviation. One-way ANOVA was performed to compare these measures across the four groups of delayed perfusion. Spearman correlation was used to study the association of global sCoV with clinical data and CBF statistics. RESULTS One hundred and forty-four participants (72 ± 7 years, 53% women) were included in the study. The proportion of maps with none, mild, moderate, and severe delayed perfusion was 15, 20, 37, and 28%, respectively. SCoV demonstrated a significant increase (p < 0.05) across the four groups, except when comparing none vs mild delayed perfusion groups (pBonf > 0.05). Global sCoV values, as an ATT proxy, ranged from 67 ± 4% (none) to 121 ± 24% (severe delayed) and were significantly associated with age and CBF statistics (p < 0.05). CONCLUSION The impact of ATT delay in single-time CBF maps requires the use of a visual scale or sCoV in clinical or research settings.
Collapse
Affiliation(s)
| | | | - Valerio Natale
- Dept. of Diagnostic and Public Health, Rivoli Hospital, Rivoli, Turin, Italy
| | - Federica Ribaldi
- Laboratory of Neuroimaging of Aging (LANVIE), University of Geneva, Geneva, Switzerland
| | - Max Scheffler
- Division of Radiology, Geneva University Hospitals, Geneva, Switzerland
| | - Ferdinando Caranci
- Department of Medicine of Precision, School of Medicine, "Luigi Vanvitelli" University of Campania, Naples, Italy
| | - Karl-Olof Lovblad
- Division of Radiology, Geneva University Hospitals, Geneva, Switzerland
| | - Gloria Menegaz
- Department of Engineering for Innovation Medicine, University of Verona, Verona, Italy
| | - Giovanni B Frisoni
- Laboratory of Neuroimaging of Aging (LANVIE), University of Geneva, Geneva, Switzerland
- Memory Clinic, Geneva University Hospitals, Geneva, Switzerland
| | - Matthias Gunther
- Imaging Physics, Fraunhofer Institute for Digital Medicine MEVIS, Bremen, Germany
| |
Collapse
|
4
|
Salih AM, Galazzo IB, Menegaz G, Altmann A. Leukocyte Telomere Length and Cardiac Structure and Function: A Mendelian Randomization Study. J Am Heart Assoc 2024; 13:e032708. [PMID: 38293941 PMCID: PMC11056120 DOI: 10.1161/jaha.123.032708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 01/04/2024] [Indexed: 02/01/2024]
Abstract
BACKGROUND Existing research demonstrates the association of shorter leukocyte telomere length with increased risk of age-related health outcomes including cardiovascular diseases. However, the direct causality of these relationships has not been definitively established. Cardiovascular aging at an organ level may be captured using image-derived phenotypes of cardiac anatomy and function. METHODS AND RESULTS In the current study, we use 2-sample Mendelian randomization to assess the causal link between leukocyte telomere length and 54 cardiac magnetic resonance imaging measures representing structure and function across the 4 cardiac chambers. Genetically predicted shorter leukocyte telomere length was causally linked to smaller ventricular cavity sizes including left ventricular end-systolic volume, left ventricular end-diastolic volume, lower left ventricular mass, and pulmonary artery. The association with left ventricular mass (β =0.217, Pfalse discovery rate=0.016) remained significant after multiple testing adjustment, whereas other associations were attenuated. CONCLUSIONS Our findings support a causal role for shorter leukocyte telomere length and faster cardiac aging, with the most prominent relationship with left ventricular mass.
Collapse
Affiliation(s)
- Ahmed M. Salih
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of LondonUK
- Department of Population Health SciencesUniversity of LeicesterUK
- Department of Computer ScienceUniversity of ZakhoKurdistan of IraqIraq
| | | | | | - André Altmann
- Centre for Medical Image Computing, Department of Medical Physics and Biomedical EngineeringUniversity College LondonUK
| |
Collapse
|
5
|
Quattrini G, Pini L, Boscolo Galazzo I, Jelescu IO, Jovicich J, Manenti R, Frisoni GB, Marizzoni M, Pizzini FB, Pievani M. Microstructural alterations in the locus coeruleus-entorhinal cortex pathway in Alzheimer's disease and frontotemporal dementia. Alzheimers Dement (Amst) 2024; 16:e12513. [PMID: 38213948 PMCID: PMC10781651 DOI: 10.1002/dad2.12513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 11/04/2023] [Accepted: 11/20/2023] [Indexed: 01/13/2024]
Abstract
INTRODUCTION We investigated in vivo the microstructural integrity of the pathway connecting the locus coeruleus to the transentorhinal cortex (LC-TEC) in patients with Alzheimer's disease (AD) and frontotemporal dementia (FTD). METHODS Diffusion-weighted MRI scans were collected for 21 AD, 20 behavioral variants of FTD (bvFTD), and 20 controls. Fractional anisotropy (FA), mean, axial, and radial diffusivities (MD, AxD, RD) were computed in the LC-TEC pathway using a normative atlas. Atrophy was assessed using cortical thickness and correlated with microstructural measures. RESULTS We found (i) higher RD in AD than controls; (ii) higher MD, RD, and AxD, and lower FA in bvFTD than controls and AD; and (iii) a negative association between LC-TEC MD, RD, and AxD, and entorhinal cortex (EC) thickness in bvFTD (all p < 0.050). DISCUSSION LC-TEC microstructural alterations are more pronounced in bvFTD than AD, possibly reflecting neurodegeneration secondary to EC atrophy. Highlights Microstructural integrity of LC-TEC pathway is understudied in AD and bvFTD.LC-TEC microstructural alterations are present in both AD and bvFTD.Greater LC-TEC microstructural alterations in bvFTD than AD.LC-TEC microstructural alterations in bvFTD are associated to EC neurodegeneration.
Collapse
Affiliation(s)
- Giulia Quattrini
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE)IRCCS Istituto Centro San Giovanni di Dio FatebenefratelliBresciaItaly
- Department of Molecular and Translational MedicineUniversity of BresciaBresciaItaly
| | - Lorenzo Pini
- Padova Neuroscience CenterUniversity of PadovaPadovaItaly
| | | | - Ileana O. Jelescu
- Department of RadiologyLausanne University Hospital and University of LausanneLausanneSwitzerland
| | - Jorge Jovicich
- Center of Mind/Brain SciencesUniversity of TrentoRoveretoItaly
| | - Rosa Manenti
- Neuropsychology UnitIRCCS Istituto Centro San Giovanni di Dio FatebenefratelliBresciaItaly
| | - Giovanni B. Frisoni
- Memory Center and LANVIE ‐ Laboratory of Neuroimaging of AgingUniversity Hospitals and University of GenevaGenevaSwitzerland
| | - Moira Marizzoni
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE)IRCCS Istituto Centro San Giovanni di Dio FatebenefratelliBresciaItaly
- Laboratory of Biological PsychiatryIRCCS Istituto Centro San Giovanni di Dio FatebenefratelliBresciaItaly
| | - Francesca B. Pizzini
- Department of Engineering for Innovation MedicineUniversity of VeronaVeronaItaly
| | - Michela Pievani
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE)IRCCS Istituto Centro San Giovanni di Dio FatebenefratelliBresciaItaly
| |
Collapse
|
6
|
Cruciani F, Aparo A, Brusini L, Combi C, Storti SF, Giugno R, Menegaz G, Boscolo Galazzo I. Identifying the joint signature of brain atrophy and gene variant scores in Alzheimer's Disease. J Biomed Inform 2024; 149:104569. [PMID: 38104851 DOI: 10.1016/j.jbi.2023.104569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 11/20/2023] [Accepted: 12/07/2023] [Indexed: 12/19/2023]
Abstract
The joint modeling of genetic data and brain imaging information allows for determining the pathophysiological pathways of neurodegenerative diseases such as Alzheimer's disease (AD). This task has typically been approached using mass-univariate methods that rely on a complete set of Single Nucleotide Polymorphisms (SNPs) to assess their association with selected image-derived phenotypes (IDPs). However, such methods are prone to multiple comparisons bias and, most importantly, fail to account for potential cross-feature interactions, resulting in insufficient detection of significant associations. Ways to overcome these limitations while reducing the number of traits aim at conveying genetic information at the gene level and capturing the integrated genetic effects of a set of genetic variants, rather than looking at each SNP individually. Their associations with brain IDPs are still largely unexplored in the current literature, though they can uncover new potential genetic determinants for brain modulations in the AD continuum. In this work, we explored an explainable multivariate model to analyze the genetic basis of the grey matter modulations, relying on the AD Neuroimaging Initiative (ADNI) phase 3 dataset. Cortical thicknesses and subcortical volumes derived from T1-weighted Magnetic Resonance were considered to describe the imaging phenotypes. At the same time the genetic counterpart was represented by gene variant scores extracted by the Sequence Kernel Association Test (SKAT) filtering model. Moreover, transcriptomic analysis was carried on to assess the expression of the resulting genes in the main brain structures as a form of validation. Results highlighted meaningful genotype-phenotype interactionsas defined by three latent components showing a significant difference in the projection scores between patients and controls. Among the significant associations, the model highlighted EPHX1 and BCAS1 gene variant scores involved in neurodegenerative and myelination processes, hence relevant for AD. In particular, the first was associated with decreased subcortical volumes and the second with decreasedtemporal lobe thickness. Noteworthy, BCAS1 is particularly expressed in the dentate gyrus. Overall, the proposed approach allowed capturing genotype-phenotype interactions in a restricted study cohort that was confirmed by transcriptomic analysis, offering insights into the underlying mechanisms of neurodegeneration in AD in line with previous findings and suggesting new potential disease biomarkers.
Collapse
Affiliation(s)
- Federica Cruciani
- Department of Engineering for Innovation Medicine, University of Verona, Verona, Italy.
| | - Antonino Aparo
- Department of Computer Science, University of Verona, Verona, Italy
| | - Lorenza Brusini
- Department of Engineering for Innovation Medicine, University of Verona, Verona, Italy
| | - Carlo Combi
- Department of Computer Science, University of Verona, Verona, Italy
| | - Silvia F Storti
- Department of Engineering for Innovation Medicine, University of Verona, Verona, Italy
| | - Rosalba Giugno
- Department of Computer Science, University of Verona, Verona, Italy
| | - Gloria Menegaz
- Department of Engineering for Innovation Medicine, University of Verona, Verona, Italy
| | | |
Collapse
|
7
|
Boscolo Galazzo I, Tonin L, Miladinović A, Storti SF. Editorial: Brain-connectivity-based computer interfaces. Front Hum Neurosci 2023; 17:1281446. [PMID: 37736145 PMCID: PMC10509283 DOI: 10.3389/fnhum.2023.1281446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 08/28/2023] [Indexed: 09/23/2023] Open
Affiliation(s)
| | - Luca Tonin
- Department of Information Engineering, University of Padua, Padua, Italy
- Padova Neuroscience Center, University of Padua, Padua, Italy
| | | | | |
Collapse
|
8
|
Rauseo E, Salih A, Raisi-Estabragh Z, Aung N, Khanderia N, Slabaugh GG, Marshall CR, Neubauer S, Radeva P, Galazzo IB, Menegaz G, Petersen SE. Ischemic Heart Disease and Vascular Risk Factors Are Associated With Accelerated Brain Aging. JACC Cardiovasc Imaging 2023; 16:905-915. [PMID: 37407123 DOI: 10.1016/j.jcmg.2023.01.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 12/06/2022] [Accepted: 01/05/2023] [Indexed: 07/07/2023]
Abstract
BACKGROUND Ischemic heart disease (IHD) has been linked with poor brain outcomes. The brain magnetic resonance imaging-derived difference between predicted brain age and actual chronological age (brain-age delta in years, positive for accelerated brain aging) may serve as an effective means of communicating brain health to patients to promote healthier lifestyles. OBJECTIVES The authors investigated the impact of prevalent IHD on brain aging, potential underlying mechanisms, and its relationship with dementia risk, vascular risk factors, cardiovascular structure, and function. METHODS Brain age was estimated in subjects with prevalent IHD (n = 1,341) using a Bayesian ridge regression model with 25 structural (volumetric) brain magnetic resonance imaging features and built using UK Biobank participants with no prevalent IHD (n = 35,237). RESULTS Prevalent IHD was linked to significantly accelerated brain aging (P < 0.001) that was not fully mediated by microvascular injury. Brain aging (positive brain-age delta) was associated with increased risk of dementia (OR: 1.13 [95% CI: 1.04-1.22]; P = 0.002), vascular risk factors (such as diabetes), and high adiposity. In the absence of IHD, brain aging was also associated with cardiovascular structural and functional changes typically observed in aging hearts. However, such alterations were not linked with risk of dementia. CONCLUSIONS Prevalent IHD and coexisting vascular risk factors are associated with accelerated brain aging and risk of dementia. Positive brain-age delta representing accelerated brain aging may serve as an effective communication tool to show the impact of modifiable risk factors and disease supporting preventative strategies.
Collapse
Affiliation(s)
- Elisa Rauseo
- William Harvey Research Institute, National Institute for Health Research (NIHR) Barts Biomedical Research Centre, Queen Mary University London, Charterhouse Square, London, United Kingdom; Barts Heart Centre, St Bartholomew's Hospital, Barts Health National Health Service (NHS) Trust, West Smithfield, London, United Kingdom
| | - Ahmed Salih
- William Harvey Research Institute, National Institute for Health Research (NIHR) Barts Biomedical Research Centre, Queen Mary University London, Charterhouse Square, London, United Kingdom; Barts Heart Centre, St Bartholomew's Hospital, Barts Health National Health Service (NHS) Trust, West Smithfield, London, United Kingdom; Department of Computer Science, University of Verona, Verona, Italy
| | - Zahra Raisi-Estabragh
- William Harvey Research Institute, National Institute for Health Research (NIHR) Barts Biomedical Research Centre, Queen Mary University London, Charterhouse Square, London, United Kingdom; Barts Heart Centre, St Bartholomew's Hospital, Barts Health National Health Service (NHS) Trust, West Smithfield, London, United Kingdom
| | - Nay Aung
- William Harvey Research Institute, National Institute for Health Research (NIHR) Barts Biomedical Research Centre, Queen Mary University London, Charterhouse Square, London, United Kingdom; Barts Heart Centre, St Bartholomew's Hospital, Barts Health National Health Service (NHS) Trust, West Smithfield, London, United Kingdom
| | - Neha Khanderia
- Imperial College Healthcare NHS Trust, London, United Kingdom
| | - Gregory G Slabaugh
- School of Electronic Engineering and Computer Science, Queen Mary University of London, United Kingdom; Alan Turing Institute, London, United Kingdom; Digital Environment Research Institute, Queen Mary University of London, London, United Kingdom
| | - Charles R Marshall
- Preventive Neurology Unit, Wolfson Institute of Population Health, Charterhouse Square, London, United Kingdom; Neurology Department, Royal London Hospital, Barts Health NHS Trust, London, United Kingdom
| | - Stefan Neubauer
- Division of Cardiovascular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford NIHR Biomedical Research Centre, Oxford University Hospitals NHS Foundation Trust, Oxford, United Kingdom
| | - Petia Radeva
- Department of Mathematics and Computer Science, University of Barcelona, Barcelona, Spain
| | | | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy.
| | - Steffen E Petersen
- William Harvey Research Institute, National Institute for Health Research (NIHR) Barts Biomedical Research Centre, Queen Mary University London, Charterhouse Square, London, United Kingdom; Barts Heart Centre, St Bartholomew's Hospital, Barts Health National Health Service (NHS) Trust, West Smithfield, London, United Kingdom; Alan Turing Institute, London, United Kingdom; Health Data Research UK, London, United Kingdom.
| |
Collapse
|
9
|
Salih A, Boscolo Galazzo I, Gkontra P, Lee AM, Lekadir K, Raisi-Estabragh Z, Petersen SE. Explainable Artificial Intelligence and Cardiac Imaging: Toward More Interpretable Models. Circ Cardiovasc Imaging 2023; 16:e014519. [PMID: 37042240 DOI: 10.1161/circimaging.122.014519] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 04/13/2023]
Abstract
Artificial intelligence applications have shown success in different medical and health care domains, and cardiac imaging is no exception. However, some machine learning models, especially deep learning, are considered black box as they do not provide an explanation or rationale for model outcomes. Complexity and vagueness in these models necessitate a transition to explainable artificial intelligence (XAI) methods to ensure that model results are both transparent and understandable to end users. In cardiac imaging studies, there are a limited number of papers that use XAI methodologies. This article provides a comprehensive literature review of state-of-the-art works using XAI methods for cardiac imaging. Moreover, it provides simple and comprehensive guidelines on XAI. Finally, open issues and directions for XAI in cardiac imaging are discussed.
Collapse
Affiliation(s)
- Ahmed Salih
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, United Kingdom (A.S., A.M.L., Z.R.-E., S.E.P.)
| | | | - Polyxeni Gkontra
- Department of de Matemàtiques i Informàtica, University of Barcelona, Spain (P.G., K.L.)
| | - Aaron Mark Lee
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, United Kingdom (A.S., A.M.L., Z.R.-E., S.E.P.)
| | - Karim Lekadir
- Department of de Matemàtiques i Informàtica, University of Barcelona, Spain (P.G., K.L.)
| | - Zahra Raisi-Estabragh
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, United Kingdom (A.S., A.M.L., Z.R.-E., S.E.P.)
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom (Z.R.-E., S.E.P.)
| | - Steffen E Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, United Kingdom (A.S., A.M.L., Z.R.-E., S.E.P.)
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, London, United Kingdom (Z.R.-E., S.E.P.)
- Health Data Research UK, London (S.E.P.)
- Alan Turing Institute, London, United Kingdom (S.E.P.)
| |
Collapse
|
10
|
Salih A, Galazzo IB, Petersen SE, Lekadir K, Radeva P, Menegaz G, Altmann A. Telomere length is causally connected to brain MRI image derived phenotypes: A mendelian randomization study. PLoS One 2022; 17:e0277344. [PMID: 36399449 PMCID: PMC9674175 DOI: 10.1371/journal.pone.0277344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 10/25/2022] [Indexed: 11/19/2022] Open
Abstract
Recent evidence suggests that shorter telomere length (TL) is associated with neuro degenerative diseases and aging related outcomes. The causal association between TL and brain characteristics represented by image derived phenotypes (IDPs) from different magnetic resonance imaging (MRI) modalities remains unclear. Here, we use two-sample Mendelian randomization (MR) to systematically assess the causal relationships between TL and 3,935 brain IDPs. Overall, the MR results suggested that TL was causally associated with 193 IDPs with majority representing diffusion metrics in white matter tracts. 68 IDPs were negatively associated with TL indicating that longer TL causes decreasing in these IDPs, while the other 125 were associated positively (longer TL leads to increased IDPs measures). Among them, ten IDPs have been previously reported as informative biomarkers to estimate brain age. However, the effect direction between TL and IDPs did not reflect the observed direction between aging and IDPs: longer TL was associated with decreases in fractional anisotropy and increases in axial, radial and mean diffusivity. For instance, TL was positively associated with radial diffusivity in the left perihippocampal cingulum tract and with mean diffusivity in right perihippocampal cingulum tract. Our results revealed a causal role of TL on white matter integrity which makes it a valuable factor to be considered when brain age is estimated and investigated.
Collapse
Affiliation(s)
- Ahmed Salih
- Department of Computer Science, University of Verona, Verona, Italy
| | | | - Steffen E. Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, London, United Kingdom
- Barts Heart Centre, St Bartholomew’s Hospital, Barts Health NHS Trust, London, United Kingdom
| | - Karim Lekadir
- Dept. de Matemàtiques i Informàtica, University of Barcelona, Barcelona, Spain
| | - Petia Radeva
- Dept. de Matemàtiques i Informàtica, University of Barcelona, Barcelona, Spain
| | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy
| | - André Altmann
- Centre for Medical Image Computing (CMIC), Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom
- * E-mail:
| |
Collapse
|
11
|
Raisi-Estabragh Z, Salih A, Gkontra P, Atehortúa A, Radeva P, Boscolo Galazzo I, Menegaz G, Harvey NC, Lekadir K, Petersen SE. Estimation of biological heart age using cardiovascular magnetic resonance radiomics. Sci Rep 2022; 12:12805. [PMID: 35896705 PMCID: PMC9329281 DOI: 10.1038/s41598-022-16639-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/13/2022] [Indexed: 11/08/2022] Open
Abstract
We developed a novel interpretable biological heart age estimation model using cardiovascular magnetic resonance radiomics measures of ventricular shape and myocardial character. We included 29,996 UK Biobank participants without cardiovascular disease. Images were segmented using an automated analysis pipeline. We extracted 254 radiomics features from the left ventricle, right ventricle, and myocardium of each study. We then used Bayesian ridge regression with tenfold cross-validation to develop a heart age estimation model using the radiomics features as the model input and chronological age as the model output. We examined associations of radiomics features with heart age in men and women, observing sex-differential patterns. We subtracted actual age from model estimated heart age to calculate a "heart age delta", which we considered as a measure of heart aging. We performed a phenome-wide association study of 701 exposures with heart age delta. The strongest correlates of heart aging were measures of obesity, adverse serum lipid markers, hypertension, diabetes, heart rate, income, multimorbidity, musculoskeletal health, and respiratory health. This technique provides a new method for phenotypic assessment relating to cardiovascular aging; further studies are required to assess whether it provides incremental risk information over current approaches.
Collapse
Affiliation(s)
- Zahra Raisi-Estabragh
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK.
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.
| | - Ahmed Salih
- Department of Computer Science, University of Verona, 37134, Verona, Italy
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Polyxeni Gkontra
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Angélica Atehortúa
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Petia Radeva
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | | | - Gloria Menegaz
- Department of Computer Science, University of Verona, 37134, Verona, Italy
| | - Nicholas C Harvey
- MRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK
- NIHR Southampton Biomedical Research Centre, University of Southampton and University Hospital Southampton NHS Foundation Trust, Southampton, UK
| | - Karim Lekadir
- Dept. de Matematiques I Informatica, University of Barcelona, 95P7+JH, Barcelona, Spain
| | - Steffen E Petersen
- William Harvey Research Institute, NIHR Barts Biomedical Research Centre, Queen Mary University of London, Charterhouse Square, London, EC1M 6BQ, UK
- Barts Heart Centre, St Bartholomew's Hospital, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
- Health Data Research UK, London, UK
- Alan Turing Institute, London, UK
| |
Collapse
|
12
|
Pini L, de Lange S, Pizzini FB, Galazzo IB, Manenti R, van den Heuvel M, Pievani M. Divergent brain connectivity patterns in relation to cognition in Alzheimer’s disease and frontotemporal dementia. Alzheimers Dement 2021. [DOI: 10.1002/alz.053662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Lorenzo Pini
- Laboratory Alzheimer's Neuroimaging & Epidemiology, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli Brescia Italy
- Padova Neuroscience Center, University of Padova Padova Italy
| | - Siemon de Lange
- Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam Amsterdam Netherlands
- Netherlands Institute for Neuroscience Amsterdam Netherlands
| | - Francesca B Pizzini
- Neuroradiology, Department of Diagnostics and Pathology, Verona University Hospital Verona Italy
| | | | - Rosa Manenti
- Neuropsychology Unit, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli Brescia Italy
| | - Martijn van den Heuvel
- Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam Amsterdam Netherlands
| | - Michela Pievani
- Laboratory Alzheimer's Neuroimaging & Epidemiology, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli Brescia Italy
| |
Collapse
|
13
|
Quattrini G, Marizzoni M, Pizzini FB, Galazzo IB, Aiello M, Didic M, Soricelli A, Albani D, Romano M, Blin O, Forloni G, Golay X, Jovicich J, Nathan PJ, Richardson JC, Salvatore M, Frisoni GB, Pievani M. Convergent and Discriminant Validity of Default Mode Network and Limbic Network Perfusion in Amnestic Mild Cognitive Impairment Patients. J Alzheimers Dis 2021; 82:1797-1808. [PMID: 34219733 DOI: 10.3233/jad-210531] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND Previous studies reported default mode network (DMN) and limbic network (LIN) brain perfusion deficits in patients with amnestic mild cognitive impairment (aMCI), frequently a prodromal stage of Alzheimer's disease (AD). However, the validity of these measures as AD markers has not yet been tested using MRI arterial spin labeling (ASL). OBJECTIVE To investigate the convergent and discriminant validity of DMN and LIN perfusion in aMCI. METHODS We collected core AD markers (amyloid-β 42 [Aβ42], phosphorylated tau 181 levels in cerebrospinal fluid [CSF]), neurodegenerative (hippocampal volumes and CSF total tau), vascular (white matter hyperintensities), genetic (apolipoprotein E [APOE] status), and cognitive features (memory functioning on Paired Associate Learning test [PAL]) in 14 aMCI patients. Cerebral blood flow (CBF) was extracted from DMN and LIN using ASL and correlated with AD features to assess convergent validity. Discriminant validity was assessed carrying out the same analysis with AD-unrelated features, i.e., somatomotor and visual networks' perfusion, cerebellar volume, and processing speed. RESULTS Perfusion was reduced in the DMN (F = 5.486, p = 0.039) and LIN (F = 12.678, p = 0.004) in APOE ɛ4 carriers compared to non-carriers. LIN perfusion correlated with CSF Aβ42 levels (r = 0.678, p = 0.022) and memory impairment (PAL, number of errors, r = -0.779, p = 0.002). No significant correlation was detected with tau, neurodegeneration, and vascular features, nor with AD-unrelated features. CONCLUSION Our results support the validity of DMN and LIN ASL perfusion as AD markers in aMCI, indicating a significant correlation between CBF and amyloidosis, APOE ɛ4, and memory impairment.
Collapse
Affiliation(s)
- Giulia Quattrini
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE), IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.,Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy
| | - Moira Marizzoni
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE), IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.,Laboratory of Biological Psychiatry, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
| | - Francesca B Pizzini
- Radiology, Department of Diagnostic and Public Health, University of Verona, Verona, Italy
| | | | | | - Mira Didic
- Aix-Marseille Univ, INSERM, INS, Instit Neurosci des Syst, Marseille, France.,APHM, Timone, Service de Neurologie et Neuropsychologie, Hôpital Timone Adultes, Marseille, France
| | - Andrea Soricelli
- IRCCS SDN, Napoli, Italy.,Department of Sport Sciences, University of Naples Parthenope, Naples, Italy
| | - Diego Albani
- Neuroscience Department, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milano, Italy
| | - Melissa Romano
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE), IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
| | - Olivier Blin
- Aix-Marseille Univ, INSERM, INS, Instit Neurosci des Syst, DHUNE, Ap-Hm, Marseille, France
| | - Gianluigi Forloni
- Neuroscience Department, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milano, Italy
| | - Xavier Golay
- Department of Brain Repair and Rehabilitation, UCL Queen Square Institute of Neurology, London, United Kingdom
| | - Jorge Jovicich
- Center for Mind/Brain Sciences - CIMeC, University of Trento, Rovereto, Italy
| | - Pradeep J Nathan
- Department of Psychiatry, University of Cambridge, Cambridge, UK
| | - Jill C Richardson
- Neurosciences Therapeutic Area, GlaxoSmithKline R&D, Gunnels Wood Road, Stevenage, United Kingdom
| | | | - Giovanni B Frisoni
- Memory Clinic and LANVIE-Laboratory of Neuroimaging of Aging, University Hospitals and University of Geneva, Geneva, Switzerland
| | - Michela Pievani
- Laboratory of Alzheimer's Neuroimaging and Epidemiology (LANE), IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy
| | | |
Collapse
|
14
|
Boscolo Galazzo I, Brusini L, Akinci M, Cruciani F, Pitteri M, Ziccardi S, Bajrami A, Castellaro M, Salih AMA, Pizzini FB, Jovicich J, Calabrese M, Menegaz G. Unraveling the MRI-Based Microstructural Signatures Behind Primary Progressive and Relapsing-Remitting Multiple Sclerosis Phenotypes. J Magn Reson Imaging 2021; 55:154-163. [PMID: 34189804 PMCID: PMC9290631 DOI: 10.1002/jmri.27806] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 06/14/2021] [Accepted: 06/15/2021] [Indexed: 01/06/2023] Open
Abstract
Background The mechanisms driving primary progressive and relapsing–remitting multiple sclerosis (PPMS/RRMS) phenotypes are unknown. Magnetic resonance imaging (MRI) studies support the involvement of gray matter (GM) in the degeneration, highlighting its damage as an early feature of both phenotypes. However, the role of GM microstructure is unclear, calling for new methods for its decryption. Purpose To investigate the morphometric and microstructural GM differences between PPMS and RRMS to characterize GM tissue degeneration using MRI. Study Type Prospective cross‐sectional study. Subjects Forty‐five PPMS (26 females) and 45 RRMS (32 females) patients. Field Strength/Sequence 3T scanner. Three‐dimensional (3D) fast field echo T1‐weighted (T1‐w), 3D turbo spin echo (TSE) T2‐w, 3D TSE fluid‐attenuated inversion recovery, and spin echo‐echo planar imaging diffusion MRI (dMRI). Assessment T1‐w and dMRI data were employed for providing information about morphometric and microstructural features, respectively. For dMRI, both diffusion tensor imaging and 3D simple harmonics oscillator based reconstruction and estimation models were used for feature extraction from a predefined set of regions. A support vector machine (SVM) was used to perform patients' classification relying on all these measures. Statistical Tests Differences between MS phenotypes were investigated using the analysis of covariance and statistical tests (P < 0.05 was considered statistically significant). Results All the dMRI indices showed significant microstructural alterations between the considered MS phenotypes, for example, the mode and the median of the return to the plane probability in the hippocampus. Conversely, thalamic volume was the only morphometric feature significantly different between the two MS groups. Ten of the 12 features retained by the selection process as discriminative across the two MS groups regarded the hippocampus. The SVM classifier using these selected features reached an accuracy of 70% and a precision of 69%. Data Conclusion We provided evidence in support of the ability of dMRI to discriminate between PPMS and RRMS, as well as highlight the central role of the hippocampus. Level of Evidence 2 Technical Efficacy Stage 3
Collapse
Affiliation(s)
| | - Lorenza Brusini
- Department of Computer Science, University of Verona, Verona, Italy
| | - Muge Akinci
- Center for Mind/Brain Sciences, University of Trento, Trento, Italy
| | | | - Marco Pitteri
- Neurology Unit, Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Stefano Ziccardi
- Neurology Unit, Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Albulena Bajrami
- Neurology Unit, Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Marco Castellaro
- Neurology Unit, Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Ahmed M A Salih
- Department of Computer Science, University of Verona, Verona, Italy
| | - Francesca B Pizzini
- Radiology Unit, Department of Diagnostic and Public Health, University of Verona, Verona, Italy
| | - Jorge Jovicich
- Center for Mind/Brain Sciences, University of Trento, Trento, Italy
| | - Massimiliano Calabrese
- Neurology Unit, Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy
| |
Collapse
|
15
|
Boscolo Galazzo I, Magrinelli F, Pizzini FB, Storti SF, Agosta F, Filippi M, Marotta A, Mansueto G, Menegaz G, Tinazzi M. Voxel-based morphometry and task functional magnetic resonance imaging in essential tremor: evidence for a disrupted brain network. Sci Rep 2020; 10:15061. [PMID: 32934259 PMCID: PMC7493988 DOI: 10.1038/s41598-020-69514-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Accepted: 07/13/2020] [Indexed: 11/09/2022] Open
Abstract
The pathophysiology of essential tremor (ET) is controversial and might be further elucidated by advanced neuroimaging. Focusing on homogenous ET patients diagnosed according to the 2018 consensus criteria, this study aimed to: (1) investigate whether task functional MRI (fMRI) can identify networks of activated and deactivated brain areas, (2) characterize morphometric and functional modulations, relative to healthy controls (HC). Ten ET patients and ten HC underwent fMRI while performing two motor tasks with their upper limb: (1) maintaining a posture (both groups); (2) simulating tremor (HC only). Activations/deactivations were obtained from General Linear Model and compared across groups/tasks. Voxel-based morphometry and linear regressions between clinical and fMRI data were also performed. Few cerebellar clusters of gray matter loss were found in ET. Conversely, widespread fMRI alterations were shown. Tremor in ET (task 1) was associated with extensive deactivations mainly involving the cerebellum, sensory-motor cortex, and basal ganglia compared to both tasks in HC, and was negatively correlated with clinical tremor scales. Homogeneous ET patients demonstrated deactivation patterns during tasks triggering tremor, encompassing a network of cortical and subcortical regions. Our results point towards a marked cerebellar involvement in ET pathophysiology and the presence of an impaired cerebello-thalamo-cortical tremor network.
Collapse
Affiliation(s)
- Ilaria Boscolo Galazzo
- Department of Computer Science, University of Verona, Strada Le Grazie 15, Ca' Vignal 2, 37134, Verona, Italy.
| | - Francesca Magrinelli
- Department of Neurosciences, Biomedicine and Movement Sciences, Neurology Section, University of Verona, Piazzale L.A. Scuro 10, 37134, Verona, Italy.
| | | | - Silvia Francesca Storti
- Department of Computer Science, University of Verona, Strada Le Grazie 15, Ca' Vignal 2, 37134, Verona, Italy
| | - Federica Agosta
- Neuroimaging Research Unit, Division of Neuroscience, Institute of Experimental Neurology, San Raffaele Scientific Institute, Vita-Salute San Raffaele University, Milan, Italy
| | - Massimo Filippi
- Neuroimaging Research Unit, Division of Neuroscience, Institute of Experimental Neurology, San Raffaele Scientific Institute, Vita-Salute San Raffaele University, Milan, Italy
| | - Angela Marotta
- Department of Neurosciences, Biomedicine and Movement Sciences, Neurology Section, University of Verona, Piazzale L.A. Scuro 10, 37134, Verona, Italy
| | - Giancarlo Mansueto
- Department of Diagnostics and Pathology, University of Verona, Verona, Italy
| | - Gloria Menegaz
- Department of Computer Science, University of Verona, Strada Le Grazie 15, Ca' Vignal 2, 37134, Verona, Italy
| | - Michele Tinazzi
- Department of Neurosciences, Biomedicine and Movement Sciences, Neurology Section, University of Verona, Piazzale L.A. Scuro 10, 37134, Verona, Italy
| |
Collapse
|
16
|
De Blasi B, Caciagli L, Storti SF, Galovic M, Koepp M, Menegaz G, Barnes A, Galazzo IB. Noise removal in resting-state and task fMRI: functional connectivity and activation maps. J Neural Eng 2020; 17:046040. [PMID: 32663803 DOI: 10.1088/1741-2552/aba5cc] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Blood-oxygenated-level dependent (BOLD)-based functional magnetic resonance imaging (fMRI) is a widely used non-invasive tool for mapping brain function and connectivity. However, the BOLD signal is highly affected by non-neuronal contributions arising from head motion, physiological noise and scanner artefacts. Therefore, it is necessary to recover the signal of interest from the other noise-related fluctuations to obtain reliable functional connectivity (FC) results. Several pre-processing pipelines have been developed, mainly based on nuisance regression and independent component analysis (ICA). The aim of this work was to investigate the impact of seven widely used denoising methods on both resting-state and task fMRI. APPROACH Task fMRI can provide some ground truth given that the task administered has well established brain activations. The resulting cleaned data were compared using a wide range of measures: motion evaluation and data quality, resting-state networks and task activations, FC. MAIN RESULTS Improved signal quality and reduced motion artefacts were obtained with all advanced pipelines, compared to the minimally pre-processed data. Larger variability was observed in the case of brain activation and FC estimates, with ICA-based pipelines generally achieving more reliable and accurate results. SIGNIFICANCE This work provides an evidence-based reference for investigators to choose the most appropriate method for their study and data.
Collapse
Affiliation(s)
- Bianca De Blasi
- Department of Medical Physics and Bioengineering, University College London, London, United Kingdom. Author to whom any correspondence should be addressed
| | | | | | | | | | | | | | | |
Collapse
|
17
|
Boscolo Galazzo I, Storti SF, Barnes A, De Blasi B, De Vita E, Koepp M, Duncan JS, Groves A, Pizzini FB, Menegaz G, Fraioli F. Arterial Spin Labeling Reveals Disrupted Brain Networks and Functional Connectivity in Drug-Resistant Temporal Epilepsy. Front Neuroinform 2019; 12:101. [PMID: 30894811 PMCID: PMC6414423 DOI: 10.3389/fninf.2018.00101] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 12/12/2018] [Indexed: 01/08/2023] Open
Abstract
Resting-state networks (RSNs) and functional connectivity (FC) have been increasingly exploited for mapping brain activity and identifying abnormalities in pathologies, including epilepsy. The majority of studies currently available are based on blood-oxygenation-level-dependent (BOLD) contrast in combination with either independent component analysis (ICA) or pairwise region of interest (ROI) correlations. Despite its success, this approach has several shortcomings as BOLD is only an indirect and non-quantitative measure of brain activity. Conversely, promising results have recently been achieved by arterial spin labeling (ASL) MRI, primarily developed to quantify brain perfusion. However, the wide application of ASL-based FC has been hampered by its complexity and relatively low robustness to noise, leaving several aspects of this approach still largely unexplored. In this study, we firstly aimed at evaluating the effect of noise reduction on spatio-temporal ASL analyses and quantifying the impact of two ad-hoc processing pipelines (basic and advanced) on connectivity measures. Once the optimal strategy had been defined, we investigated the applicability of ASL for connectivity mapping in patients with drug-resistant temporal epilepsy vs. controls (10 per group), aiming at revealing between-group voxel-wise differences in each RSN and ROI-wise FC changes. We first found ASL was able to identify the main network (DMN) along with all the others generally detected with BOLD but never previously reported from ASL. For all RSNs, ICA-based denoising (advanced pipeline) allowed to increase their similarity with the corresponding BOLD template. ASL-based RSNs were visibly consistent with literature findings; however, group differences could be identified in the structure of some networks. Indeed, statistics revealed areas of significant FC decrease in patients within different RSNs, such as DMN and cerebellum (CER), while significant increases were found in some cases, such as the visual networks. Finally, the ROI-based analyses identified several inter-hemispheric dysfunctional links (controls > patients) mainly between areas belonging to the DMN, right-left thalamus and right-left temporal lobe. Conversely, fewer connections, predominantly intra-hemispheric, showed the opposite pattern (controls < patients). All these elements provide novel insights into the pathological modulations characterizing a "network disease" as epilepsy, shading light on the importance of perfusion-based approaches for identifying the disrupted areas and communications between brain regions.
Collapse
Affiliation(s)
| | | | - Anna Barnes
- Institute of Nuclear Medicine, University College London, London, United Kingdom
| | - Bianca De Blasi
- Department of Medical Physics, University College London, London, United Kingdom
| | - Enrico De Vita
- Department of Biomedical Engineering, School of Biomedical Engineering & Imaging Sciences, King's Health Partners, King's College London, London, United Kingdom
| | - Matthias Koepp
- Department of Clinical and Experimental Epilepsy, Institute of Neurology, University College London, London, United Kingdom
| | - John Sidney Duncan
- Department of Clinical and Experimental Epilepsy, Institute of Neurology, University College London, London, United Kingdom
| | - Ashley Groves
- Institute of Nuclear Medicine, University College London, London, United Kingdom
| | | | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy
| | - Francesco Fraioli
- Institute of Nuclear Medicine, University College London, London, United Kingdom
| |
Collapse
|
18
|
Pedrinolla A, Venturelli M, Tamburin S, Fonte C, Stabile AM, Galazzo IB, Ghinassi B, Venneri MA, Pizzini FB, Muti E, Smania N, Di Baldassarre A, Naro F, Rende M, Schena F. Non-Aβ-Dependent Factors Associated with Global Cognitive and Physical Function in Alzheimer's Disease: A Pilot Multivariate Analysis. J Clin Med 2019; 8:jcm8020224. [PMID: 30744116 PMCID: PMC6406356 DOI: 10.3390/jcm8020224] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Revised: 02/05/2019] [Accepted: 02/06/2019] [Indexed: 01/15/2023] Open
Abstract
Recent literature highlights the importance of identifying factors associated with mild cognitive impairment (MCI) and Alzheimer’s Disease (AD). Actual validated biomarkers include neuroimaging and cerebrospinal fluid assessments; however, we investigated non-Aβ-dependent factors associated with dementia in 12 MCI and 30 AD patients. Patients were assessed for global cognitive function (Mini-Mental state examination—MMSE), physical function (Physical Performance Test—PPT), exercise capacity (6-min walking test—6MWT), maximal oxygen uptake (VO2max), brain volume, vascular function (flow-mediated dilation—FMD), inflammatory status (tumor necrosis factor—α ,TNF- α, interleukin-6, -10 and -15) and neurotrophin receptors (p75NTR and Tropomyosin receptor kinase A -TrkA). Baseline multifactorial information was submitted to two separate backward stepwise regression analyses to identify the variables associated with cognitive and physical decline in demented patients. A multivariate regression was then applied to verify the stepwise regression. The results indicated that the combination of 6MWT and VO2max was associated with both global cognitive and physical function (MMSE = 11.384 + (0.00599 × 6MWT) − (0.235 × VO2max)); (PPT = 1.848 + (0.0264 × 6MWT) + (19.693 × VO2max)). These results may offer important information that might help to identify specific targets for therapeutic strategies (NIH Clinical trial identification number NCT03034746).
Collapse
Affiliation(s)
- Anna Pedrinolla
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
| | - Massimo Venturelli
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
- Department of Internal Medicine, University of Utah, Salt Lake City, UT 84132, USA.
| | - Stefano Tamburin
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
| | - Cristina Fonte
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
- Neuromotor and Cognitive Rehabilitation Research Centre, University of Verona, 37134 Verona, Italy.
| | - Anna Maria Stabile
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, 06123, Perugia, Italy.
| | | | - Barbara Ghinassi
- Department of Medicine and Aging Sciences, University G. d'Annunzio, Chieti-Pescara, 66100, Chieti, Italy.
| | - Mary Anna Venneri
- Department of Anatomical, Histological, Forensic Medicine and Orthopedic Science, 00185, Rome, Italy.
| | | | - Ettore Muti
- Mons. Mazzali Foundation, 46100, Mantua, Italy.
| | - Nicola Smania
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
- Neuromotor and Cognitive Rehabilitation Research Centre, University of Verona, 37134 Verona, Italy.
| | - Angela Di Baldassarre
- Department of Medicine and Aging Sciences, University G. d'Annunzio, Chieti-Pescara, 66100, Chieti, Italy.
| | - Fabio Naro
- Department of Anatomical, Histological, Forensic Medicine and Orthopedic Science, 00185, Rome, Italy.
| | - Mario Rende
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, 06123, Perugia, Italy.
| | - Federico Schena
- Departement of Neuroscience, Biomedicine and Movement Sciences, University of Verona,Via Casorati 43, 37127 Verona, Italy.
| |
Collapse
|
19
|
De Blasi B, Barnes A, Galazzo IB, Hua CH, Shulkin B, Koepp M, Tisdall M. Age-Specific 18F-FDG Image Processing Pipelines and Analysis Are Essential for Individual Mapping of Seizure Foci in Pediatric Patients with Intractable Epilepsy. J Nucl Med 2018; 59:1590-1596. [PMID: 29626122 PMCID: PMC6167536 DOI: 10.2967/jnumed.117.203950] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 02/03/2018] [Indexed: 12/05/2022] Open
Abstract
18F-FDG PET is an important tool for the presurgical assessment of children with drug-resistant epilepsy. Standard assessment is performed visually and is often subjective and highly user-dependent. Voxelwise statistics can be used to remove user-dependent biases by automatically identifying areas of significant hypo- or hypermetabolism associated with the epileptogenic area. In the clinical setting, this analysis is performed using commercially available software. These software packages suffer from two main limitations when applied to pediatric PET data: pediatric scans are spatially normalized to an adult standard template, and statistical comparisons use an adult control dataset. The aim of this work was to provide a reliable observer-independent pipeline for the analysis of pediatric 18F-FDG PET scans, as part of presurgical planning in epilepsy. Methods: A pseudocontrol dataset (19 subjects 6–9 y old, and 93 subjects 10–20 y old) was used to create two age-specific 18F-FDG PET pediatric templates in standard pediatric space. The 18F-FDG PET scans of 46 epilepsy patients (16 patients 6–9 y old, and 30 patients 10–17 y old) were retrospectively collated and analyzed using voxelwise statistics. This procedure was implemented with the standard pipeline available in the commercial software Scenium and an in-house Statistical Parametric Mapping, version 8 (SPM8), pipeline (including age-specific pediatric templates and reference database). A κ-test was used to assess the level of agreement between the findings of voxelwise analyses and the clinical diagnosis of each patient. The SPM8 pipeline was further validated using postsurgical seizure-free patients. Results: Improved agreement with the clinical diagnosis was reported using SPM8, in terms of focus localization, especially for the younger patient group: κ = 0.489 for Scenium versus 0.826 for SPM. The proposed pipeline also showed a sensitivity of about 70% in both age ranges for the localization of hypometabolic areas on pediatric 18F-FDG PET scans in postsurgical seizure-free patients. Conclusion: We showed that by creating age-specific templates and using pediatric control databases, our pipeline provides an accurate and sensitive semiquantitative method for assessing the 18F-FDG PET scans of patients under 18 y old.
Collapse
Affiliation(s)
- Bianca De Blasi
- Department of Medical Physics, University College London, London, United Kingdom
| | - Anna Barnes
- Institute of Nuclear Medicine, University College London Hospitals, London, United Kingdom
| | | | - Chia-Ho Hua
- Department of Radiation Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee
| | - Barry Shulkin
- Department of Diagnostic Imaging, St. Jude Children's Research Hospital, Memphis, Tennessee
| | - Matthias Koepp
- Institute of Neurology, University College London, London, United Kingdom; and
| | | |
Collapse
|
20
|
Venturelli M, Pedrinolla A, Boscolo Galazzo I, Fonte C, Smania N, Tamburin S, Muti E, Crispoltoni L, Stabile A, Pistilli A, Rende M, Pizzini FB, Schena F. Impact of Nitric Oxide Bioavailability on the Progressive Cerebral and Peripheral Circulatory Impairments During Aging and Alzheimer's Disease. Front Physiol 2018; 9:169. [PMID: 29593548 PMCID: PMC5861210 DOI: 10.3389/fphys.2018.00169] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 02/20/2018] [Indexed: 11/19/2022] Open
Abstract
Advanced aging, vascular dysfunction, and nitric oxide (NO) bioavailability are recognized risk factors for Alzheimer's disease (AD). However, the contribution of AD, per se, to this putative pathophysiological mechanism is still unclear. To better answer this point, we quantified cortical perfusion with arterial spin labeling (PVC-CBF), measured ultrasound internal carotid (ICA), and femoral (FA) artery blood flow in a group of patients with similar age (~78 years) but different cognitive impairment (i.e., mild cognitive impairment MCI, mild AD-AD1, moderate AD-AD2, and severe AD-AD3) and compared them to young and healthy old (aged-matched) controls. NO-metabolites and passive leg-movement (PLM) induced hyperemia were used to assess systemic vascular function. Ninety-eight individuals were recruited for this study. PVC-CBF, ICA, and FA blood flow were markedly (range of 9–17%) and significantly (all p < 0.05) reduced across the spectrum from YG to OLD, MCI, AD1, AD2, AD3 subjects. Similarly, plasma level of nitrates and the values of PLM were significantly reduced (range of 8–26%; p < 0.05) among the six groups. Significant correlations were retrieved between plasma nitrates, PLM and PVC-CBF, CA, and FA blood flow. This integrative and comprehensive approach to vascular changes in aging and AD showed progressive changes in NO bioavailability and cortical, extracranial, and peripheral circulation in patients with AD and suggested that they are directly associated with AD and not to aging. Moreover, these results suggest that AD-related impairments of circulation are progressive and not confined to the brain. The link between cardiovascular and the central nervous systems degenerative processes in patients at different severity of AD is likely related to the depletion of NO.
Collapse
Affiliation(s)
- Massimo Venturelli
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | | | | | - Cristina Fonte
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy.,Neuromotor and Cognitive Rehabilitation Research Centre, University of Verona, Verona, Italy
| | - Nicola Smania
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy.,Neuromotor and Cognitive Rehabilitation Research Centre, University of Verona, Verona, Italy
| | - Stefano Tamburin
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| | | | - Lucia Crispoltoni
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, Perugia, Italy
| | - Annamaria Stabile
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, Perugia, Italy
| | - Alessandra Pistilli
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, Perugia, Italy
| | - Mario Rende
- Department of Surgical and Biomedical Sciences, Section of Human Anatomy, School of Medicine, University of Perugia, Perugia, Italy
| | - Francesca B Pizzini
- Neuroradiology, Department of Diagnostics and Pathology, Verona University Hospital, Verona, Italy
| | - Federico Schena
- Department of Neurosciences, Biomedicine and Movement Sciences, University of Verona, Verona, Italy
| |
Collapse
|
21
|
Boscolo Galazzo I, Brusini L, Obertino S, Zucchelli M, Granziera C, Menegaz G. On the Viability of Diffusion MRI-Based Microstructural Biomarkers in Ischemic Stroke. Front Neurosci 2018; 12:92. [PMID: 29515362 PMCID: PMC5826355 DOI: 10.3389/fnins.2018.00092] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 02/05/2018] [Indexed: 01/05/2023] Open
Abstract
Recent tract-based analyses provided evidence for the exploitability of 3D-SHORE microstructural descriptors derived from diffusion MRI (dMRI) in revealing white matter (WM) plasticity. In this work, we focused on the main open issues left: (1) the comparative analysis with respect to classical tensor-derived indices, i.e., Fractional Anisotropy (FA) and Mean Diffusivity (MD); and (2) the ability to detect plasticity processes in gray matter (GM). Although signal modeling in GM is still largely unexplored, we investigated their sensibility to stroke-induced microstructural modifications occurring in the contralateral hemisphere. A more complete picture could provide hints for investigating the interplay of GM and WM modulations. Ten stroke patients and ten age/gender-matched healthy controls were enrolled in the study and underwent diffusion spectrum imaging (DSI). Acquisitions at three and two time points (tp) were performed on patients and controls, respectively. For all subjects and acquisitions, FA and MD were computed along with 3D-SHORE-based indices [Generalized Fractional Anisotropy (GFA), Propagator Anisotropy (PA), Return To the Axis Probability (RTAP), Return To the Plane Probability (RTPP), and Mean Square Displacement (MSD)]. Tract-based analysis involving the cortical, subcortical and transcallosal motor networks and region-based analysis in GM were successively performed, focusing on the contralateral hemisphere to the stroke. Reproducibility of all the indices on both WM and GM was quantitatively proved on controls. For tract-based, longitudinal group analyses revealed the highest significant differences across the subcortical and transcallosal networks for all the indices. The optimal regression model for predicting the clinical motor outcome at tp3 included GFA, PA, RTPP, and MSD in the subcortical network in combination with the main clinical information at baseline. Region-based analysis in the contralateral GM highlighted the ability of anisotropy indices in discriminating between groups mainly at tp1, while diffusivity indices appeared to be altered at tp2. 3D-SHORE indices proved to be suitable in probing plasticity in both WM and GM, further confirming their viability as a novel family of biomarkers in ischemic stroke in WM and revealing their potential exploitability in GM. Their combination with tensor-derived indices can provide more detailed insights of the different tissue modulations related to stroke pathology.
Collapse
Affiliation(s)
| | - Lorenza Brusini
- Department of Computer Science, University of Verona, Verona, Italy
| | - Silvia Obertino
- Department of Computer Science, University of Verona, Verona, Italy
| | - Mauro Zucchelli
- Department of Computer Science, University of Verona, Verona, Italy
| | - Cristina Granziera
- Translational Imaging in Neurology Group, Department of Neurology, Basel University Hospital, Basel, Switzerland
| | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy
| |
Collapse
|
22
|
|
23
|
Storti SF, Boscolo Galazzo I, Montemezzi S, Menegaz G, Pizzini FB. Dual-echo ASL contributes to decrypting the link between functional connectivity and cerebral blow flow. Hum Brain Mapp 2017; 38:5831-5844. [PMID: 28885752 DOI: 10.1002/hbm.23804] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 08/23/2017] [Accepted: 08/28/2017] [Indexed: 12/26/2022] Open
Abstract
Arterial spin labeling (ASL) MRI with a dual-echo readout module (DE-ASL) enables noninvasive simultaneous acquisition of cerebral blood flow (CBF)-weighted images and blood oxygenation level dependent (BOLD) contrast. Up to date, resting-state functional connectivity (FC) studies based on CBF fluctuations have been very limited, while the BOLD is still the method most frequently used. The purposes of this technical report were (i) to assess the potentiality of the DE-ASL sequence for the quantification of resting-state FC and brain organization, with respect to the conventional BOLD (cvBOLD) and (ii) to investigate the relationship between a series of complex network measures and the CBF information. Thirteen volunteers were scanned on a 3 T scanner acquiring a pseudocontinuous multislice DE-ASL sequence, from which the concomitant BOLD (ccBOLD) simultaneously to the ASL can be extracted. In the proposed comparison, the brain FC and graph-theoretical analysis were used for quantifying the connectivity strength between pairs of regions and for assessing the network model properties in all the sequences. The main finding was that the ccBOLD part of the DE-ASL sequence provided highly comparable connectivity results compared to cvBOLD. As expected, because of its different nature, ASL sequence showed different patterns of brain connectivity and graph indices compared to BOLD sequences. To conclude, the resting-state FC can be reliably detected using DE-ASL, simultaneously to CBF quantifications, whereas a single fMRI experiment precludes the quantitative measurement of BOLD signal changes. Hum Brain Mapp 38:5831-5844, 2017. © 2017 Wiley Periodicals, Inc.
Collapse
Affiliation(s)
- Silvia F Storti
- Department of Computer Science, University of Verona, Verona, Italy
| | | | - Stefania Montemezzi
- Department of Diagnostics and Pathology, University Hospital Verona, Verona, Italy
| | - Gloria Menegaz
- Department of Computer Science, University of Verona, Verona, Italy
| | - Francesca B Pizzini
- Department of Diagnostics and Pathology, University Hospital Verona, Verona, Italy
| |
Collapse
|
24
|
Galazzo IB, Pizzini FB, Pini L, Ferrari C, Cobelli C, Menegaz G, Ciceri EM, Cotelli M, Manenti R, Frisoni GB, Pievani M. [IC‐P‐174]: NETWORK‐BASED MODULATION OF CEREBRAL PERFUSION AND FUNCTIONAL CONNECTIVITY IN ALZHEIMER's DISEASE. Alzheimers Dement 2017. [DOI: 10.1016/j.jalz.2017.06.2549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
| | - Francesca B. Pizzini
- Neuroradiology, Department of Diagnostics and PathologyVerona University HospitalVeronaItaly
| | - Lorenzo Pini
- Department of Molecular and Translational MedicineUniversity of BresciaBresciaItaly
- Lab Alzheimer's Neuroimaging and Epidemiology, IRCCS FatebenefratelliBresciaItaly
| | | | - Chiara Cobelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Gloria Menegaz
- Department of Computer ScienceUniversity of VeronaVeronaItaly
| | - Elisa M. Ciceri
- Neuroradiology, Department of Diagnostics and PathologyVerona University HospitalVeronaItaly
| | - Maria Cotelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Rosa Manenti
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Giovanni B. Frisoni
- Lab Alzheimer's Neuroimaging and Epidemiology, IRCCS FatebenefratelliBresciaItaly
- Memory Clinic and LANVIE ‐ Laboratory of Neuroimaging of AgingUniversity Hospitals and University of GenevaGenevaSwitzerland
| | - Michela Pievani
- Lab Alzheimer's Neuroimaging and Epidemiology, IRCCS FatebenefratelliBresciaItaly
| |
Collapse
|
25
|
Galazzo IB, Pizzini FB, Pini L, Ferrari C, Cobelli C, Menegaz G, Ciceri EM, Cotelli M, Manenti R, Frisoni GB, Pievani M. [P2–334]: NETWORK‐BASED MODULATION OF CEREBRAL PERFUSION AND FUNCTIONAL CONNECTIVITY IN ALZHEIMER's DISEASE. Alzheimers Dement 2017. [DOI: 10.1016/j.jalz.2017.06.988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
| | - Francesca B. Pizzini
- Neuroradiology, Department of Diagnostics and PathologyVerona University HospitalVeronaItaly
| | - Lorenzo Pini
- Department of Molecular and Translational MedicineUniversity of BresciaBresciaItaly
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
| | | | - Chiara Cobelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Gloria Menegaz
- Department of Computer ScienceUniversity of VeronaVeronaItaly
| | - Elisa M. Ciceri
- Neuroradiology, Department of Diagnostics and PathologyVerona University HospitalVeronaItaly
| | - Maria Cotelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Rosa Manenti
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Giovanni B. Frisoni
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
- Memory Clinic and LANVIE ‐ Laboratory of Neuroimaging of AgingUniversity Hospitals and University of GenevaGenevaSwitzerland
| | - Michela Pievani
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
| |
Collapse
|
26
|
Pini L, Galazzo IB, Ferrari C, Cobelli C, Cotelli M, Frisoni GB, Pizzini FB, Manenti R, Pievani M. [P1–399]: NON‐INVASIVE BRAIN MODULATION OF ABERRANT NETWORKS IN ALZHEIMER's DISEASE. Alzheimers Dement 2017. [DOI: 10.1016/j.jalz.2017.06.415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Affiliation(s)
- Lorenzo Pini
- Department of Molecular and Translational MedicineUniversity of BresciaBresciaItaly
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
| | | | | | - Chiara Cobelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Maria Cotelli
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Giovanni B. Frisoni
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
- Memory Clinic and LANVIE ‐ Laboratory of Neuroimaging of AgingUniversity Hospitals and University of GenevaGenevaSwitzerland
| | - Francesca B. Pizzini
- Neuroradiology, Department of Diagnostics and PathologyVerona University HospitalVeronaItaly
| | - Rosa Manenti
- Neuropsychology Unit, IRCCS FatebenefratelliBresciaItaly
| | - Michela Pievani
- Lab Alzheimer's Neuroimaging & Epidemiology, IRCCS FatebenefratelliBresciaItaly
| |
Collapse
|
27
|
Pievani M, Pini L, Ferrari C, Pizzini FB, Boscolo Galazzo I, Cobelli C, Cotelli M, Manenti R, Frisoni GB. Coordinate-Based Meta-Analysis of the Default Mode and Salience Network for Target Identification in Non-Invasive Brain Stimulation of Alzheimer’s Disease and Behavioral Variant Frontotemporal Dementia Networks. J Alzheimers Dis 2017; 57:825-843. [DOI: 10.3233/jad-161105] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Michela Pievani
- Laboratory Alzheimer’s Neuroimaging and Epidemiology, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
| | - Lorenzo Pini
- Laboratory Alzheimer’s Neuroimaging and Epidemiology, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
- Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy
| | - Clarissa Ferrari
- Statistics Service, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
| | - Francesca B. Pizzini
- Neuroradiology, Department of Diagnostics and Pathology, Verona University Hospital, Verona, Italy
| | | | - Chiara Cobelli
- Neuropsychology Unit, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
| | - Maria Cotelli
- Neuropsychology Unit, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
| | - Rosa Manenti
- Neuropsychology Unit, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
| | - Giovanni B. Frisoni
- Laboratory Alzheimer’s Neuroimaging and Epidemiology, IRCCS Centro San Giovanni di Dio – Fatebenefratelli, Brescia, Italy
- University Hospitals and University of Geneva, Geneva, Switzerland
| |
Collapse
|
28
|
Brusini L, Obertino S, Galazzo IB, Zucchelli M, Krueger G, Granziera C, Menegaz G. Ensemble average propagator-based detection of microstructural alterations after stroke. Int J Comput Assist Radiol Surg 2016; 11:1585-97. [DOI: 10.1007/s11548-016-1442-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Accepted: 06/02/2016] [Indexed: 11/28/2022]
|
29
|
Pievani M, Pini L, Ferrari C, Pizzini F, Galazzo IB, Cotelli M, Manenti R, Frisoni G. Coordinate-based meta-analysis of resting fMRI studies for the identification of potential targets for brain stimulation in AD and bvFTD. Neurobiol Aging 2016. [DOI: 10.1016/j.neurobiolaging.2016.01.045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
30
|
Gandolfi M, Formaggio E, Geroin C, Storti SF, Boscolo Galazzo I, Waldner A, Manganotti P, Smania N. Electroencephalographic Changes of Brain Oscillatory Activity After Upper Limb Somatic Sensation Training in a Patient With Somatosensory Deficit After Stroke. Clin EEG Neurosci 2015; 46:347-52. [PMID: 25185438 DOI: 10.1177/1550059414536895] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2013] [Accepted: 04/22/2014] [Indexed: 11/17/2022]
Abstract
The development of an innovative functional assessment procedure based on the combination of electroencephalography (EEG) and robot-assisted upper limb devices may provide new insights into the dynamics of cortical reorganization promoted by rehabilitation. The aim of this study was to evaluate changes in event-related synchronization/desynchronization (ERS/ERD) in alpha and beta bands in a patient with pure sensory stroke who underwent a specific rehabilitation program for somatic sensation recovery. A 49-year-old, right-handed woman (time since stroke, 12 months) with severe upper limb somatic sensation deficits was tested using validated clinical scales and a standardized video-EEG system combined with the Bi-Manu-Track robot-assisted arm trainer protocol. The patient underwent a 3-month home-based rehabilitation program for promoting upper limb recovery (1 hour a day for 5 days a week). She was tested before treatment, at 1-month, and at 3-month during treatment. Results showed progressive recovery of upper limb function over time. These effects were associated with specific changes in the modulation of alpha and beta event-related synchronization/desynchronization. This unique study provides new perspectives for the assessment of functional deficits and changes in cortical activity promoted by rehabilitation in poststroke patients.
Collapse
Affiliation(s)
- Marialuisa Gandolfi
- Neuromotor and Cognitive Rehabilitation Research Centre (CRRNC), USO Neurological Rehabilitation, AOUI of Verona, Verona, Italy Department of Neurological and Movement Sciences, University of Verona, Verona, Italy
| | - Emanuela Formaggio
- Department of Neurophysiology, IRCCS Foundation San Camillo Hospital, Venice, Italy
| | - Christian Geroin
- Neuromotor and Cognitive Rehabilitation Research Centre (CRRNC), USO Neurological Rehabilitation, AOUI of Verona, Verona, Italy Department of Neurological and Movement Sciences, University of Verona, Verona, Italy
| | | | | | - Andreas Waldner
- Department of Neurological Rehabilitation, Private Hospital Villa Melitta, Bolzano, Italy
| | - Paolo Manganotti
- Department of Neurological and Movement Sciences, University of Verona, Verona, Italy Department of Neurophysiology, IRCCS Foundation San Camillo Hospital, Venice, Italy
| | - Nicola Smania
- Neuromotor and Cognitive Rehabilitation Research Centre (CRRNC), USO Neurological Rehabilitation, AOUI of Verona, Verona, Italy Department of Neurological and Movement Sciences, University of Verona, Verona, Italy
| |
Collapse
|
31
|
Storti SF, Del Felice A, Formaggio E, Boscolo Galazzo I, Bongiovanni LG, Cerini R, Fiaschi A, Manganotti P. Spatial and Temporal EEG-fMRI Changes During Preictal and Postictal Phases in a Patient With Posttraumatic Epilepsy. Clin EEG Neurosci 2015; 46:247-52. [PMID: 24743547 DOI: 10.1177/1550059414523960] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Accepted: 01/17/2014] [Indexed: 11/17/2022]
Abstract
The combined use of electroencephalography (EEG) and functional magnetic resonance imaging (EEG-fMRI) in epilepsy allows the noninvasive hemodynamic characterization of epileptic discharge-related neuronal activations. The aim of this study was to investigate pathophysiologic mechanisms underlying epileptic activity by exploring the spatial and temporal distribution of fMRI signal modifications during seizure in a single patient with posttraumatic epilepsy. EEG and fMRI data were acquired during two scanning sessions: a spontaneous critical episode was observed during the first, and interictal events were recorded during the second. The EEG-fMRI data were analyzed using the general linear model (GLM). Blood oxygenation level-dependent (BOLD) localization derived from the preictal and artifact-free postictal phase was concordant with the BOLD localization of the interictal epileptiform discharges identified in the second session, pointing to a left perilesional mesiofrontal area. Of note, BOLD signal modifications were already visible several seconds before seizure onset. In brief, BOLD activations from the preictal, postictal, and interictal epileptiform discharge analysis appear to be concordant with the clinically driven localization hypothesis, whereas a widespread network of activations is detected during the ictal phase in a partial seizure.
Collapse
Affiliation(s)
- Silvia F Storti
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy
| | - Alessandra Del Felice
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy
| | - Emanuela Formaggio
- Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy
| | - Ilaria Boscolo Galazzo
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy
| | - Luigi G Bongiovanni
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy
| | - Roberto Cerini
- Department of Pathology and Diagnostics, University of Verona, Verona, Italy
| | - Antonio Fiaschi
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy Clinical Neurophysiology and Functional Neuroimaging Unit, AOUI of Verona, Italy
| | - Paolo Manganotti
- Department of Neurological and Movement Sciences, Section of Neurology, University of Verona, Verona, Italy Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy Clinical Neurophysiology and Functional Neuroimaging Unit, AOUI of Verona, Italy
| |
Collapse
|
32
|
Storti SF, Boscolo Galazzo I, Del Felice A, Pizzini FB, Arcaro C, Formaggio E, Mai R, Manganotti P. Combining ESI, ASL and PET for quantitative assessment of drug-resistant focal epilepsy. Neuroimage 2014; 102 Pt 1:49-59. [DOI: 10.1016/j.neuroimage.2013.06.028] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Revised: 05/03/2013] [Accepted: 06/10/2013] [Indexed: 11/16/2022] Open
|
33
|
Formaggio E, Storti SF, Boscolo Galazzo I, Bongiovanni LG, Cerini R, Fiaschi A, Manganotti P. Reproducibility of EEG-fMRI results in a patient with fixation-off sensitivity. Clin EEG Neurosci 2014; 45:212-7. [PMID: 24048241 DOI: 10.1177/1550059413497946] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Blood oxygenation level-dependent (BOLD) activation associated with interictal epileptiform discharges in a patient with fixation-off sensitivity (FOS) was studied using a combined electroencephalography-functional magnetic resonance imaging (EEG-fMRI) technique. An automatic approach for combined EEG-fMRI analysis and a subject-specific hemodynamic response function was used to improve general linear model analysis of the fMRI data. The EEG showed the typical features of FOS, with continuous epileptiform discharges during elimination of central vision by eye opening and closing and fixation; modification of this pattern was clearly visible and recognizable. During all 3 recording sessions EEG-fMRI activations indicated a BOLD signal decrease related to epileptiform activity in the parietal areas. This study can further our understanding of this EEG phenomenon and can provide some insight into the reliability of the EEG-fMRI technique in localizing the irritative zone.
Collapse
Affiliation(s)
- Emanuela Formaggio
- Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy
| | - Silvia Francesca Storti
- Clinical Neurophysiology and Functional Neuroimaging Unit, Department of Neurological and Movement Sciences, University Hospital, Verona, Italy
| | - Ilaria Boscolo Galazzo
- Clinical Neurophysiology and Functional Neuroimaging Unit, Department of Neurological and Movement Sciences, University Hospital, Verona, Italy
| | - Luigi Giuseppe Bongiovanni
- Clinical Neurophysiology and Functional Neuroimaging Unit, Department of Neurological and Movement Sciences, University Hospital, Verona, Italy
| | - Roberto Cerini
- Department of Pathology and Diagnostics, Section of Radiology, G.B. Rossi Hospital, University of Verona, Verona, Italy
| | - Antonio Fiaschi
- Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy
- Clinical Neurophysiology and Functional Neuroimaging Unit, Department of Neurological and Movement Sciences, University Hospital, Verona, Italy
| | - Paolo Manganotti
- Department of Neurophysiology, Foundation IRCCS San Camillo Hospital, Venice, Italy
- Clinical Neurophysiology and Functional Neuroimaging Unit, Department of Neurological and Movement Sciences, University Hospital, Verona, Italy
| |
Collapse
|
34
|
Formaggio E, Storti SF, Boscolo Galazzo I, Gandolfi M, Geroin C, Smania N, Fiaschi A, Manganotti P. Time–Frequency Modulation of ERD and EEG Coherence in Robot-Assisted Hand Performance. Brain Topogr 2014; 28:352-63. [DOI: 10.1007/s10548-014-0372-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Accepted: 04/27/2014] [Indexed: 01/19/2023]
|
35
|
Boscolo Galazzo I, Storti SF, Formaggio E, Pizzini FB, Fiaschi A, Beltramello A, Bertoldo A, Manganotti P. Investigation of brain hemodynamic changes induced by active and passive movements: A combined arterial spin labeling-BOLD fMRI study. J Magn Reson Imaging 2013; 40:937-48. [DOI: 10.1002/jmri.24432] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Accepted: 08/30/2013] [Indexed: 12/13/2022] Open
Affiliation(s)
- Ilaria Boscolo Galazzo
- Department of Neurological and Movement Sciences, Section of Neurology; University of Verona; Italy
| | - Silvia F. Storti
- Department of Neurological and Movement Sciences, Section of Neurology; University of Verona; Italy
| | - Emanuela Formaggio
- Department of Neurophysiology Foundation IRCCS; San Camillo Hospital; Venice Italy
| | | | - Antonio Fiaschi
- Department of Neurological and Movement Sciences, Section of Neurology; University of Verona; Italy
- Department of Neurophysiology Foundation IRCCS; San Camillo Hospital; Venice Italy
- Clinical Neurophysiology and Functional Neuroimaging Unit; AOUI of Verona; Italy
| | | | | | - Paolo Manganotti
- Department of Neurological and Movement Sciences, Section of Neurology; University of Verona; Italy
- Department of Neurophysiology Foundation IRCCS; San Camillo Hospital; Venice Italy
- Clinical Neurophysiology and Functional Neuroimaging Unit; AOUI of Verona; Italy
| |
Collapse
|