Optimization studies on biodegradation of atrazine by Bacillus badius ABP6 strain using response surface methodology

Advances in understanding and mitigating Atrazine's environmental and health impact: A comprehensive review

Atrazine is a widely used herbicide in agriculture, and it has garnered significant attention because of its potential risks to the environment and human health. The extensive utilization of atrazine, alongside its persistence in water and soil, underscores the critical need to develop safe and efficient removal strategies. This comprehensive review aims to spotlight atrazine's potential impact on ecosystems and public health, particularly its enduring presence in soil, water, and plants. As a known toxic endocrine disruptor, atrazine poses environmental and health risks. The review navigates through innovative removal techniques across soil and water environments, elucidating microbial degradation, phytoremediation, and advanced methodologies such as electrokinetic-assisted phytoremediation (EKPR) and photocatalysis. The review notably emphasizes the complex process of atrazine degradation and ongoing scientific efforts to address this, recognizing its potential risks to both the environment and human health.

Degradation of Atrazine by an Anaerobic Microbial Consortium Enriched from Soil of an Herbicide-Manufacturing Plant

Atrazine is an important herbicide that has been widely used for weed control in recent decades. However, with the extensive use of atrazine, its residue seriously pollutes the environment. Therefore, the microbial degradation and detoxification of atrazine have received extensive attention. To date, the aerobic degradation pathway of atrazine has been well studied; however, little is known about its anaerobic degradation in the environment. In this study, an anaerobic microbial consortium capable of efficiently degrading atrazine was enriched from soil collected from an herbicide-manufacturing plant. Six metabolites including hydroxyatrazine, deethylatrazine, N-isopropylammelide, deisopropylatrazine, cyanuric acid, and the novel metabolite 4-ethylamino-6-isopropylamino-1,3,5-triazine (EIPAT) were identified, and two putative anaerobic degradation pathways of atrazine were proposed: a hydrolytic dechlorination pathway is similar to that seen in aerobic degradation, and a novel pathway initiated by reductive dechlorination. During enrichment, Denitratisoma, Thiobacillus, Rhodocyclaceae_unclassified, Azospirillum, and Anaerolinea abundances significantly increased, dominating the enriched consortium, indicating that they may be involved in atrazine degradation. These findings provide valuable evidence for elucidating the anaerobic catabolism of atrazine and facilitating anaerobic remediation of residual atrazine pollution.

Investigation of dissipation kinetics and half-lives of fipronil and thiamethoxam in soil under various conditions using experimental modeling design by Minitab software

To determine the extent of pesticide buildup and their environmental contamination, the environmental half-lives of pesticides are examined. The influence of the factors affecting the half-lives of fipronil and thiamethoxam including soil type, sterilization, temperature, and time and their interactions was studied using experimental modeling design by Minitab software. Based on the dissipation kinetics data, fipronil concentrations reduced gradually over 60 days while thiamethoxam concentrations decreased strongly. Also, fipronil and thiamethoxam dissipated more rapidly in calcareous soil than in alluvial soil. Thiamethoxam, however, disappeared more rapidly than fipronil in all treatments. Incubation at 50 °C leads to rapid the pesticide degradation. For prediction of the dissipation rate, model 5 was found to be the best fit, Residue of insecticide (%) = 15.466 - 11.793 Pesticide - 1.579 Soil type + 0.566 Sterilization - 3.120 Temperature, R2 = 0.94 and s = 3.80. Also, the predicted DT50 values were calculated by a model, DT50 (day) = 20.20 - 0.30 Pesticide - 7.97 Soil Type + 0.07 Sterilization - 2.04 Temperature. The shortest experimental and predicted DT50 values were obtained from treatment of thiamethoxam at 50 °C in calcareous soil either sterilized (7.36 and 9.96 days) or non-sterilized (5.92 and 9.82 days), respectively. The experimental DT50 values of fipronil and thiamethoxam ranged from 5.92 to 59.95 days while, the modeled values ranged from 9.82 to 30.58 days. According to the contour plot and response surface plot, temperature and sterilization were the main factors affecting the half-lives of fipronil and thiamethoxam. The DT50 values of fipronil and thiamethoxam increased in alluvial soil and soil with low temperature. In general, there is a high agreement between the experimental results and the modeled results.

Biodegradation of Imazethapyr by Bacterial Strain IM9601 Isolated from Agricultural Soil

The widespread utilization of the herbicide imazethapyr presents significant challenges to crop rotation and results in detrimental soil degradation issues. Bacterial biodegradation has emerged as a promising and eco-friendly approach for mitigating pesticide residues contamination in the environment. In this study, a novel bacterium, identified as Brevibacterium sp. IM9601, was isolated and characterized based on morphological, physiological, and biochemical characteristics, as well as 16S rRNA gene sequence. This strain exhibited the ability to utilize imazethapyr as its sole carbon source for growth. Response surface methodology (RSM) was applied to optimize the degradation conditions. The most favorable conditions were determined to be a temperature of 27 °C, pH of 6.0, and an initial inoculum with a final OD600 of 0.15. Under these optimized condition, bacterial strain IM9601 exhibited substantial imazethapyr degradation, with removal rates of 90.08 and 87.05% for initial imazethapyr concentrations of 50 and 100 mg L-1, respectively, achieved within a 5-day incubation period. This investigation highlights imazethapyr-degrading capabilities of the Brevibacterium genus bacterial strain IM9601, marking it as a potentially novel and effective solution for addressing the environmental pollution resulting from the usage of imazethapyr. The study contributes to the growing body of research on bioremediation approaches, offering a sustainable and environmentally friendly method for mitigating the adverse impacts of herbicide contamination in agricultural settings.

Investigation of the Persistence, Toxicological Effects, and Ecological Issues of S-Triazine Herbicides and Their Biodegradation Using Emerging Technologies: A Review

S-triazines are a group of herbicides that are extensively applied to control broadleaf weeds and grasses in agricultural production. They are mainly taken up through plant roots and are transformed by xylem tissues throughout the plant system. They are highly persistent and have a long half-life in the environment. Due to imprudent use, their toxic residues have enormously increased in the last few years and are frequently detected in food commodities, which causes chronic diseases in humans and mammals. However, for the safety of the environment and the diversity of living organisms, the removal of s-triazine herbicides has received widespread attention. In this review, the degradation of s-triazine herbicides and their intermediates by indigenous microbial species, genes, enzymes, plants, and nanoparticles are systematically investigated. The hydrolytic degradation of substituents on the s-triazine ring is catalyzed by enzymes from the amidohydrolase superfamily and yields cyanuric acid as an intermediate. Cyanuric acid is further metabolized into ammonia and carbon dioxide. Microbial-free cells efficiently degrade s-triazine herbicides in laboratory as well as field trials. Additionally, the combinatorial approach of nanomaterials with indigenous microbes has vast potential and considered sustainable for removing toxic residues in the agroecosystem. Due to their smaller size and unique properties, they are equally distributed in sediments, soil, water bodies, and even small crevices. Finally, this paper highlights the implementation of bioinformatics and molecular tools, which provide a myriad of new methods to monitor the biodegradation of s-triazine herbicides and help to identify the diverse number of microbial communities that actively participate in the biodegradation process.

An Overview on the Treatment of Oil Pollutants in Soil Using Synthetic and Biological Surfactant Foam and Nanoparticles

Oil-contaminated soil is one of the most concerning problems due to its potential damage to human, animals, and the environment. Nanoparticles have effectively been used to degrade oil pollution in soil in the lab and in the field for a long time. In recent years, surfactant foam and nanoparticles have shown high removal of oil pollutants from contaminated soil. This review provides an overview on the remediation of oil pollutants in soil using nanoparticles, surfactant foams, and nanoparticle-stabilized surfactant foams. In particular, the fate and transport of oil compounds in the soil, the interaction of nanoparticles and surfactant foam, the removal mechanisms of nanoparticles and various surfactant foams, the effect of some factors (e.g., soil characteristics and amount, nanoparticle properties, surfactant concentration) on remediation efficiency, and some advantages and disadvantages of these methods are evaluated. Different nanoparticles and surfactant foam can be effectively utilized for treating oil compounds in contaminated soil. The treatment efficiency is dependent on many factors. Thus, optimizing these factors in each scenario is required to achieve a high remediation rate while not causing negative effects on humans, animals, and the environment. In the future, more research on the soil types, operating cost, posttreatment process, and recycling and reuse of surfactants and nanoparticles need to be conducted.

Process optimization of cypermethrin biodegradation by regression analysis and parametric modeling along with biochemical degradation pathway

Pyrethroid pesticides are of great environmental and health concern with regard to neurotoxicity and ubiquitous occurrence. Here, we reported a new bacterial strain identified as Bacillus cereus AKAD 3-1 that degraded 88.1% of 50 mg/l of cypermethrin in an aqueous medium. The biodegradation of cypermethrin was optimized by CCD (central composite design) and validated by ANN-GA (artificial neural network-genetic algorithm). Both the approaches proved to possess good performance in modeling and optimizing the growth conditions. Results indicated that the process variables have a significant (< 0.0001) impact on cypermethrin biodegradation. Moreover, the predicted CCD model had a "lack of fit p-value" of "0.9975." The optimum CCD and ANN model had an R² value of 0.9703 and 0.9907, indicating that the two models' experimental and predicted values are closely fitted. The isolate successfully converted cypermethrin to CO₂ and phenol without producing any toxic metabolite. Finally, a degradation pathway was proposed with the intermediate compounds identified by GC-MS. The present study highlights an important potential application of strain AKAD 3-1 for the in situ bioremediation of cypermethrin-contaminated environments.

Degradation of Residual Herbicide Atrazine in Agri-Food and Washing Water

Atrazine, an herbicide used to control grassy and broadleaf weed, has become an essential part of agricultural crop protection tools. It is widely sprayed on corn, sorghum and sugar cane, with the attendant problems of its residues in agri-food and washing water. If ingested into humans, this residual atrazine can cause reproductive harm, developmental toxicity and carcinogenicity. It is therefore important to find clean and economical degradation processes for atrazine. In recent years, many physical, chemical and biological methods have been proposed to remove atrazine from the aquatic environment. This review introduces the research works of atrazine degradation in aqueous solutions by method classification. These methods are then compared by their advantages, disadvantages, and different degradation pathways of atrazine. Moreover, the existing toxicological experimental data for atrazine and its metabolites are summarized. Finally, the review concludes with directions for future research and major challenges to be addressed.

Co-metabolic biodegradation of 4-bromophenol in a mixture of pollutants system by Arthrobacter chlorophenolicus A6

Brominated phenols are listed as priority pollutants together with nitrophenol and chlorophenol are the key components of paper pulp wastewater. However, the biodegradation of bromophenol in a mixed substrate system is very scanty. In the present investigation, simultaneous biodegradation kinetics of three substituted phenols 4-bromophenol (4-BP), 4-nitrophenol (4-NP), and 4-chlorophenol (4-CP) were investigated using Arthrobacter chlorophenolicus A6. A 2³ full factorial design was applied with varying 4-BP and 4-CP from 75-125 mg/L and 4-NP from 50-100 mg/L. Almost complete degradation of this mixture of substituted phenols was achieved at initial concentration combinations of 125, 125, and 100 mg/L of 4-CP, 4-BP, and 4-NP, respectively, in 68 h. Statistical analysis of the results revealed that, among the three variables, 4-NP had the most prominent influence on the degradation of both 4-CP and 4-BP, while the concentration of 4-CP had a strong negative interaction effect on the biodegradation of 4-NP. Irrespective of the concentration levels of these three substrates, 4-NP was preferentially biodegraded over 4-CP and 4-BP. Furthermore, 4-BP biodegradation rates were found to be higher than those of 4-CP, followed by 4-NP. Besides, the variation of the biomass yield coefficient of the culture was investigated at different initial concentration combinations of these substituted phenols. Although the actinomycetes consumed 4-NP at a faster rate, the biomass yield was very poor. This revealed that the microbial cells were more stressed when grown on 4-NP compared to 4-BP and 4-CP. Overall, this study revealed the potential of A. chlorophenolicus A6 for the degradation of 4-BP in mixed substrate systems.

Mechanism and Kinetic Analysis of the Degradation of Atrazine by O3/H2O2

In phosphate buffer, the degradation of ATZ by ozone/(O3/H2O2) under various circumstance was explored and the degradation mechanism and dynamics were probed. The findings revealed that when maintaining the reaction temperature at 25 °C, the H2O2 concentration and the O3 concentration were 20 mol/L and 20 mol/L, respectively. Moreover, the degradation rate of 5 mol/L ATZ under the influence of O3/H2O2 was 92.59% in phosphate buffer at pH7. The mechanism analysis showed that HO• and O3 underwent co-oxidized degradation and that the HO• and O3 oxidation degradation ratios were close to 1:1 under acidic conditions. Furthermore, HO• oxidative degradation dominated the ATZ degradation process. The kinetics analysis showed that the ATZ kinetics of O3/H2O2 degradation were more compatible with quasi-second-order reaction kinetics under different temperatures, pH values, and H2O2 concentrations.

Isatis phytogenic relieved atrazine induced growth retardation, hepato-renal dysfunction, and oxidative stress in Nile tilapia

The influence of herbicides causes health and economic loss, which requires innovative solutions to sustain the aquaculture industry. In this regard, dietary isatis is included in Nile tilapia diets to relieve atrazine (ATZ)-induced growth retardation, hepato-renal dysfunction, and oxidative stress. The first and second groups offered the control diet (control), while the third and fourth groups offered the isatis supplemented diet (1%). Meantime, half of the water was replaced and mixed with ATZ (1.39 mg/L) in the second and fourth groups for 30 days. The group of fish delivered isatis had significantly enhanced FBW, WG, and SGR, while fish intoxicated with ATZ had meaningfully impaired growth behavior (p < 0.05). Further, the FCR was improved by isatis, and ATZ resulted in the worst FCR among the groups. Interestingly fish fed isatis and exposed with ATZ (88.89%) had a higher survival rate than fish exposed with ATZ without isatis feeding, and both are lower than the control (97.78%) (p < 0.05). The histological structure in the isatis-treated groups showed distinguished enhancement and branching of the intestinal villi. The intestine of ATZ-treated fish revealed damage and inflammatory cell infiltration in the intestinal mucosa with separation of lining epithelium. Generally, fish fed isatis and intoxicated with ATZ had lower uric acid, urea, creatinine, ALT, and AST and higher total protein, globulin, and albumin than fish exposed with ATZ without feeding with isatis (p < 0.05). Markedly, fish-fed isatis had the highest SOD, CAT, GPx, and the lowest MDA level compared to the other groups (p < 0.05). Meanwhile, fish exposed with ATZ had the worst SOD, CAT, GPx, and the highest MDA level compared to the other groups (p < 0.05). In summary, dietary isatis relieved ATZ induced growth retardation, hepato-renal dysfunction, and oxidative stress in Nile tilapia.

Current and emerging tools of computational biology to improve the detoxification of mycotoxins

Biological organisms carry a rich potential for removing toxins from our environment, but identifying suitable candidates and improving them remain challenging. We explore the use of computational tools to discover strains and enzymes that detoxify harmful compounds. In particular, we will focus on mycotoxins-fungi-produced toxins that contaminate food and feed-and biological enzymes that are capable of rendering them less harmful. We discuss the use of established and novel computational tools to complement existing empirical data in three directions: discovering the prospect of detoxification among underexplored organisms, finding important cellular processes that contribute to detoxification, and improving the performance of detoxifying enzymes. We hope to create a synergistic conversation between researchers in computational biology and those in the bioremediation field. We showcase open bioremediation questions where computational researchers can contribute and highlight relevant existing and emerging computational tools that could benefit bioremediation researchers.

Enhanced removal of fifteen pesticide mixture by a single bacterial strain using response surface methodology and its application in raw milk

PURPOSE

Environmental contamination with various pesticides accompanied by uncontrolled use contributes to severe ecological and health problems. Although extensive research was conducted on pesticides degradation, very few reports have demonstrated the degradation of mixed pesticides. Consequently, this study aimed to evaluate the removal efficacy of highly potent bacterial isolate for pesticide mixture under optimal culture conditions, followed by their application in milk.

METHODS

Isolation and selection of bacterial isolates were performed from 40 milk samples by enrichment culture technique and were screened to obtain highly potent bacterial strain identified by 16 S rDNA analysis. The statistics-based experimental designs were applied to optimize the culture conditions towards the best degradation of pesticides mixture, followed by subsequent utilization in milk. The degradation ratio of pesticides was analyzed using gas chromatography-mass spectrometry.

RESULTS

In this study, a bacterial strain S6A identified as Bacillus subtilis-mw1 efficiently eliminated environmental contaminants from different groups of pesticide residues. The statistical optimization showcased optimum settings that accomplished the highest pesticide mixture degradation (61.59 %). The application experiment manifested that degradation of pesticide mixtures of sterile milk (STM) was relatively faster than non-sterile milk (NSTM).

CONCLUSIONS

The obtained results assist in eliminating environmental contamination with various groups of pesticide residues. Furthermore, it can be employed in reducing pesticide residues that cause milk contamination to increase safety and quality.Graphical abstract.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40201-021-00683-0.

Optimum conditions of zero-valent iron nanoparticle stabilized foam application for diesel-contaminated soil remediation involving three major soil types

Stability of foam, enhanced by nano zero-valent iron (nZVI) and its optimized constituents, may have significant potential for effective treatment of soil contaminated with diesel oil-a major environmental problem. The optimum diesel removal efficiency from distinct types of soil accomplished by the unique application of such foams as well as the optimum conditions of the foaming constituents have not been reported in literature so far. Hence, in this work, the removal of diesel contaminant from different soil types (desert, coastal, clay soil) is optimized, and the optimized results are reported for the first time, using response surface methodology (RSM), for alkylpolyglucoside phosphate (APG-Ph) foam, stabilized by nZVI. The effect of concentrations of APG-Ph (0.02, 0.04, 0.06, 0.08, and 0.1 volume %) and nZVI (2, 3, and 3.5 mg/l) on diesel removal efficacy from soil is studied using Box-Behnken design (BBD) of response surface methodology (RSM). Maximum diesel removal efficiency obtained at a concentration of 0.1 volume % APG-Ph foam with 3.5 mg/l nZVI for desert, coastal, and clay soil is 94.6, 95.3, and 57.5%, respectively. The optimum concentrations of APG-Ph and nZVI are found to be 0.98 volume % and 0.8 mg/l, respectively. Validation of this optimal condition experimentally results in highest removal efficiency of 98.3, 97.2, and 75.9% for desert, coastal, and clay soil respectively. This is in good agreement with the predicted values by RSM (98.67, 97.57, and 76.85%). The maximum diesel removal efficiency predicted at optimal concentration of APG-Ph and nZVI is significantly larger than the results reported in literature in last three years.

Optimization Studies on Biological Desulfurization of Sulfide Ore Using Response Surface Methodology

This research aimed to optimize the experimental conditions of biodesulfurization of sulfide ore and to evaluate the flame-retardant effect after desulfurization under optimal conditions. Six experimental factors were determined: particle size of ore sample, ambient temperature, rotary speed of the shaking table, volume of bacteria liquid, concentration of leaching aid (Tween80), and pH value of acidizing ore sample. Desulfurization efficiency was used as the main characterization index of the desulfurization effect in optimization studies. Particle size of ore sample, rotary speed of the shaking table, and volume of bacteria liquid inoculated were selected as significant factors by a Plackett–Burman experiment. Modeling, optimization, and analysis of the interactive effects of these factors, notably between particle size and bacteria liquid, were performed using a Box–Behnken design with response surface methodology. The optimum operating conditions were found to be: particle size of 120 to 140 mesh, rotary speed of 175 rpm, and bacteria liquid of 111 mL. Under these conditions, a significant rise of 8.1% was seen in 5-day average desulfurization efficiency. The 5-day oxidation weight gain rate of desulfurized ore was 2.73%, while that of the control group was 4.78%. The results show that, after optimized desulfurization, the surface oxidizability and spontaneous combustion tendency of the ore are reduced.

Screening of native microalgae species for carbon fixation at the vicinity of Malaysian coal-fired power plant

Global warming has become a serious issue nowadays as the trend of CO₂ emission is increasing by years. In Malaysia, the electricity and energy sector contributed a significant amount to the nation’s CO₂ emission due to fossil fuel use. Many research works have been carried out to mitigate this issue, including carbon capture and utilization (CCUS) technology and biological carbon fixation by microalgae. This study makes a preliminary effort to screen native microalgae species in the Malaysian coal-fired power plant’s surrounding towards carbon fixation ability. Three dominant species, including Nannochloropsis sp., Tetraselmis sp., and Isochrysis sp. were identified and tested in the laboratory under ambient and pure CO₂ condition to assess their growth and CO₂ fixation ability. The results indicate Isochrysis sp. as the superior carbon fixer against other species. In continuation, the optimization study using Response Surface Methodology (RSM) was carried out to optimize the operating conditions of Isochrysis sp. using a customized lab-scale photobioreactor under simulated flue gas exposure. This species was further acclimatized and tested under actual flue gas generated by the power plant. Isochrysis sp. had shown its capability as a carbon fixer with CO₂ fixation rate of 0.35 gCO₂/L day under actual coal-fired flue gas exposure after cycles of acclimatization phase. This work is the first to demonstrate indigenous microalgae species' ability as a carbon fixer under Malaysian coal-fired flue gas exposure. Thus, the findings shall be useful in exploring the microalgae potential as a biological agent for carbon emission mitigation from power plants more sustainably.

Bacilli-Mediated Degradation of Xenobiotic Compounds and Heavy Metals

Xenobiotic compounds are man-made compounds and widely used in dyes, drugs, pesticides, herbicides, insecticides, explosives, and other industrial chemicals. These compounds have been released into our soil and water due to anthropogenic activities and improper waste disposal practices and cause serious damage to aquatic and terrestrial ecosystems due to their toxic nature. The United States Environmental Protection Agency (USEPA) has listed several toxic substances as priority pollutants. Bacterial remediation is identified as an emerging technique to remove these substances from the environment. Many bacterial genera are actively involved in the degradation of toxic substances. Among the bacterial genera, the members of the genus Bacillus have a great potential to degrade or transform various toxic substances. Many Bacilli have been isolated and characterized by their ability to degrade or transform a wide range of compounds including both naturally occurring substances and xenobiotic compounds. This review describes the biodegradation potentials of Bacilli toward various toxic substances, including 4-chloro-2-nitrophenol, insecticides, pesticides, herbicides, explosives, drugs, polycyclic aromatic compounds, heavy metals, azo dyes, and aromatic acids. Besides, the advanced technologies used for bioremediation of environmental pollutants using Bacilli are also briefly described. This review will increase our understanding of Bacilli-mediated degradation of xenobiotic compounds and heavy metals.