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Ota T, Saburi W, Komba S, Mori H. Chemical synthesis of oligosaccharide derivatives with partial structure of β1-3/1-6 glucan, using monomeric units for the formation of β1-3 and β1-6 glucosidic linkages. Biosci Biotechnol Biochem 2023; 87:1111-1121. [PMID: 37407435 DOI: 10.1093/bbb/zbad093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 06/29/2023] [Indexed: 07/07/2023]
Abstract
β1-3/1-6 Glucans, known for their diverse structures, comprise a β1-3-linked main chain and β1-6-linked short branches. Laminarin, a β1-3/1-6 glucan extracted from brown seaweed, for instance, includes β1-6 linkages even in the main chain. The diverse structures provide various beneficial functions for the glucan. To investigate the relationship between structure and functionality, and to enable the characterization of β1-3/1-6 glucan-metabolizing enzymes, oligosaccharides containing the exact structures of β1-3/1-6 glucans are required. We synthesized the monomeric units for the synthesis of β1-3/1-6 mixed-linked glucooligosaccharides. 2-(Trimethylsilyl)ethyl 2-O-benzoyl-4,6-O-benzylidene-β-d-glucopyranoside served as an acceptor in the formation of β1-3 linkages. Phenyl 2-O-benzoyl-4,6-O-benzylidene-3-O-(tert-butyldiphenylsilyl)-1-thio-β-d-glucopyranoside and phenyl 2,3-di-O-benzoyl-4,6-di-O-levulinyl-1-thio-β-d-glucopyranoside acted as donors, synthesizing acceptors suitable for the formation of β1-3- and β1-6-linkages, respectively. These were used to synthesize a derivative of Glcβ1-6Glcβ1-3Glcβ1-3Glc, demonstrating that the proposed route can be applied to synthesize the main chain of β-glucan, with the inclusion of both β1-3 and β1-6 linkages.
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Affiliation(s)
- Tomoya Ota
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
| | - Wataru Saburi
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
| | - Shiro Komba
- Institute of Food Research, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Haruhide Mori
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
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2
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Mattsson I, Lahtinen M, Sitdikov R, Wank B, Saloranta-Simell T, Leino R. Phase-selective low molecular weight organogelators derived from allylated d-mannose. Carbohydr Res 2022; 518:108596. [DOI: 10.1016/j.carres.2022.108596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 05/10/2022] [Accepted: 05/17/2022] [Indexed: 11/02/2022]
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3
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Yagami N, Vibhute AM, Tanaka HN, Komura N, Imamura A, Ishida H, Ando H. Stereoselective Synthesis of Diglycosyl Diacylglycerols with Glycosyl Donors Bearing a β-Stereodirecting 2,3-Naphthalenedimethyl Protecting Group. J Org Chem 2020; 85:16166-16181. [PMID: 33253577 DOI: 10.1021/acs.joc.0c02121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Diglycosyl diacylglycerols (DGDGs) are major components of Gram-positive bacterial plasma membranes and are involved in the immune response systems. The chemical synthesis of DGDGs has been highly demanded, as it will allow the elucidation of their biological functions at the molecular level. In this study, we have developed a novel β-stereodirecting 2,3-naphthalenedimethyl (NapDM) protecting group that is orthogonal to protecting groups commonly used in oligosaccharide synthesis. The NapDM group can be easily cleaved under TFA-mediated acidic conditions. Futhermore, we demonstrated the application of this protecting group to an acyl protecting-group-free strategy by utilizing the NapDM group for the synthesis of DGDGs. This strategy features the use of the β-stereodirecting NapDM group as an acid-cleavable permanent protecting group and late-stage glycosylation of monoglycosyl diacylglycerol acceptors, enabling the stereoselective synthesis of three different bacterial DGDGs with unsaturated fatty acid chain(s).
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Affiliation(s)
- Nahoko Yagami
- Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Amol M Vibhute
- Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Hide-Nori Tanaka
- Institute for Glyco-core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.,Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Naoko Komura
- Institute for Glyco-core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.,Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Akihiro Imamura
- Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Hideharu Ishida
- Institute for Glyco-core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.,Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.,Department of Applied Bioorganic Chemistry, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Hiromune Ando
- Institute for Glyco-core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.,Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
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Tanaka N, Nakajima M, Aramasa H, Nakai H, Taguchi H, Tsuzuki W, Komba S. Synthesis of three deoxy-sophorose derivatives for evaluating the requirement of hydroxy groups at position 3 and/or 3' of sophorose by 1,2-β-oligoglucan phosphorylases. Carbohydr Res 2018; 468:13-22. [PMID: 30121414 DOI: 10.1016/j.carres.2018.08.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 08/09/2018] [Accepted: 08/09/2018] [Indexed: 10/28/2022]
Abstract
Sophorose (Sop2) is known as a powerful inducer of cellulases in Trichoderma reesei, and in recent years 1,2-β-D-oligoglucan phosphorylase (SOGP) has been found to use Sop2 in synthetic reactions. From the structure of the complex of SOGP with Sop2, it was predicted that both the 3-hydroxy group at the reducing end glucose moiety of Sop2 and the 3'-hydroxy group at the non-reducing end glucose moiety of Sop2 were important for substrate recognition. In this study, three kinds of 3- and/or 3'-deoxy-Sop2 derivatives were synthesized to evaluate this mechanism. The deoxygenation of the 3-hydroxy group of D-glucopyranose derivative was performed by radical reduction using a toluoyl group as a leaving group. The utilization of a toluoyl group that plays two roles (a leaving group for the deoxygenation and a protecting group for a hydroxy group) resulted in efficient syntheses of the three target compounds. The NMR spectra of the two final compounds (3-deoxy- and 3,3'-dideoxy-Sop2) suggested that the glucose moiety of the reducing end of Sop2 can easily take on a furanose structure (five-membered ring structure) by deoxygenation of the 3-hydroxy group of Sop2. In addition, the ratio of the five- and six-membered ring structures changed depending on the temperature. The SOGPs exhibited remarkably lower specific activity for 3'-deoxy- and 3,3'-dideoxy-Sop2, indicating that the 3'-hydroxy group of Sop2 is important for substrate recognition by SOGPs.
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Affiliation(s)
- Nobukiyo Tanaka
- Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan; Food Component Analysis Unit, Food Research Institute, National Agriculture and Food Research Organization, 2-1-12, Kannondai, Tsukuba, Ibaraki 305-8642, Japan
| | - Masahiro Nakajima
- Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Hiroki Aramasa
- Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan
| | - Hiroyuki Nakai
- Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan
| | - Hayao Taguchi
- Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Wakako Tsuzuki
- Food Component Analysis Unit, Food Research Institute, National Agriculture and Food Research Organization, 2-1-12, Kannondai, Tsukuba, Ibaraki 305-8642, Japan
| | - Shiro Komba
- Food Component Analysis Unit, Food Research Institute, National Agriculture and Food Research Organization, 2-1-12, Kannondai, Tsukuba, Ibaraki 305-8642, Japan.
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Yang HK, Zhao H, Yang PR, Huang CH. How do molecular structures affect gelation properties of supramolecular gels? Insights from low-molecular-weight gelators with different aromatic cores and alkyl chain lengths. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2017.09.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Affiliation(s)
- Ankita Mitra
- Sweet Lab; Department of Chemical Sciences; Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur; Nadia 741246 India
| | - Vikramjit Sarkar
- Sweet Lab; Department of Chemical Sciences; Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur; Nadia 741246 India
| | - Balaram Mukhopadhyay
- Sweet Lab; Department of Chemical Sciences; Indian Institute of Science Education and Research (IISER) Kolkata, Mohanpur; Nadia 741246 India
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Basava V, Romlein H, Bitsaktsis C, Marzabadi CH. Synthesis and immunological evaluation of a low molecular weight saccharide with TLR-4 agonist activity. Bioorg Med Chem 2017; 25:697-705. [PMID: 27979367 DOI: 10.1016/j.bmc.2016.11.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 11/21/2016] [Accepted: 11/23/2016] [Indexed: 11/27/2022]
Abstract
The paucity of FDA approved adjuvants renders the synthesis, characterization, and use of new compounds as vaccine adjuvants, a necessity. For this purpose, a novel saccharide analog has been synthesized from glucosamine, pyruvylated galactose and 1,4-cyclohexanediol and its biological efficacy was determined in innate immune cells. More specifically, we assessed the production of pro-inflammatory cytokines from the murine monocyte cell line, Raw 264.7 and from C57 BL/6 mouse peritoneal macrophages following exposure to the saccharide analog. Our data conclude that the novel saccharide has immunostimulatory activity on mouse macrophages as indicated by the elevated levels of IL-6 and TNF-α in culture supernatants. This effect was TLR-4-dependent but TLR-2-independent. Our data, suggest TLR-4 agonism; a key feature of vaccine adjuvants.
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Affiliation(s)
- Vikram Basava
- Department of Chemistry & Biochemistry, Seton Hall University, 400 South Orange Ave., South Orange, NJ 07079, USA
| | - Heather Romlein
- Department of Biological Science, Seton Hall University, 400 South Orange Ave., South Orange, NJ 07079, USA
| | - Constantine Bitsaktsis
- Department of Biological Science, Seton Hall University, 400 South Orange Ave., South Orange, NJ 07079, USA
| | - Cecilia H Marzabadi
- Department of Chemistry & Biochemistry, Seton Hall University, 400 South Orange Ave., South Orange, NJ 07079, USA.
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Kesava Raju CS, Pramanik B, Ravishankar R, Chalapathi Rao PV, Sriganesh G. Xylitol based phase selective organogelators for potential oil spillage recovery. RSC Adv 2017. [DOI: 10.1039/c7ra06898k] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Xylitol based cost effective and easily synthesizable phase selective gelators were developed for strong gelation ability for different crude oils, wide range of refinery products and reported for their potential application in oil spillage recovery.
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Affiliation(s)
| | - Bhaskar Pramanik
- Analytical Division
- Hindustan Petroleum Green R&D Center (HPGRDC)
- KIADB Industrial Estate
- Bangalore
- India
| | - Raman Ravishankar
- Analytical Division
- Hindustan Petroleum Green R&D Center (HPGRDC)
- KIADB Industrial Estate
- Bangalore
- India
| | | | - Gandham Sriganesh
- Analytical Division
- Hindustan Petroleum Green R&D Center (HPGRDC)
- KIADB Industrial Estate
- Bangalore
- India
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Vibhute AM, Muvvala V, Sureshan KM. A Sugar-Based Gelator for Marine Oil-Spill Recovery. Angew Chem Int Ed Engl 2016; 55:7782-5. [DOI: 10.1002/anie.201510308] [Citation(s) in RCA: 119] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2015] [Indexed: 12/14/2022]
Affiliation(s)
- Amol M. Vibhute
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
| | - Venkatanarayana Muvvala
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
| | - Kana M. Sureshan
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
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10
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Vibhute AM, Muvvala V, Sureshan KM. A Sugar-Based Gelator for Marine Oil-Spill Recovery. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201510308] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Amol M. Vibhute
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
| | - Venkatanarayana Muvvala
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
| | - Kana M. Sureshan
- School of Chemistry; Indian Institute of Science Education and Research, Thiruvananthapuram; KERALA- 695016 India
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11
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Traboni S, Bedini E, Giordano M, Iadonisi A. Three Solvent-Free Catalytic Approaches to the Acetal Functionalization of Carbohydrates and Their Applicability to One-Pot Generation of Orthogonally Protected Building Blocks. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500745] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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12
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Rajkamal R, Chatterjee D, Paul A, Banerjee S, Yadav S. Enantiomeric organogelators from d-/l-arabinose for phase selective gelation of crude oil and their gel as a photochemical micro-reactor. Chem Commun (Camb) 2014; 50:12131-4. [DOI: 10.1039/c4cc05950f] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Easy access via single steps to each enantiomer of a simple chiral organogelator, their gelation abilities and applications are reported.
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Affiliation(s)
- Rajkamal Rajkamal
- Department of Applied Chemistry
- Indian School of Mines
- Dhanbad - 826004, India
| | - Debnath Chatterjee
- Department of Applied Chemistry
- Indian School of Mines
- Dhanbad - 826004, India
| | - Abhijit Paul
- Department of Applied Chemistry
- Indian School of Mines
- Dhanbad - 826004, India
| | | | - Somnath Yadav
- Department of Applied Chemistry
- Indian School of Mines
- Dhanbad - 826004, India
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Abreu MF, Salvador VT, Vitorazi L, Gatts CE, dos Santos DR, Giacomini R, Cardoso SL, Miranda PC. Tuning methyl 4,6-O-benzylidene α-d-glucopyranosides’ gelation ability by minor group modifications. Carbohydr Res 2012; 353:69-78. [DOI: 10.1016/j.carres.2012.03.021] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2012] [Revised: 03/14/2012] [Accepted: 03/19/2012] [Indexed: 10/28/2022]
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14
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Efficient activation of thioglycosides with N-(p-methylphenylthio)-ε-caprolactam-TMSOTf. Carbohydr Res 2012; 354:40-8. [PMID: 22542575 DOI: 10.1016/j.carres.2012.03.024] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2012] [Revised: 03/17/2012] [Accepted: 03/22/2012] [Indexed: 11/22/2022]
Abstract
N-(p-Methylphenylthio)-ε-caprolactam (1) in combination with trimethylsilyl trifluoromethanesulfonate (TMSOTf) provides an efficient thiophilic promoter system, capable of activating different thioglycosides. Both 'armed' and 'disarmed' thioglycosyl donors were activated for glycosidic bond formation. Notably, this reagent combination works well in reactivity-based one-pot oligosaccharide assembly strategy.
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Basu N, Maity SK, Roy S, Singha S, Ghosh R. FeCl3 mediated arylidenation of carbohydrates. Carbohydr Res 2011; 346:534-9. [DOI: 10.1016/j.carres.2011.01.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2010] [Revised: 12/31/2010] [Accepted: 01/06/2011] [Indexed: 10/18/2022]
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Roy S, Maiti K, Moulik SP, Ghosh R. Synthesis of C14- and C16-carbon chain containing mannitol diester and diether based non-ionic amphiphiles and studies of their Langmuir monolayer films at the air/water interface. Colloids Surf A Physicochem Eng Asp 2011. [DOI: 10.1016/j.colsurfa.2011.01.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Tailor-made chiral pyranopyrans based on glucose and galactose and studies on self-assembly of some crystals and low molecular weight organogel (LMOG). Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.08.054] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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18
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Maity SK, Patra A, Ghosh R. Convergent synthesis of the tetrasaccharide repeating unit related to the O-antigenic polysaccharide of Escherichia coli 78. Tetrahedron 2010. [DOI: 10.1016/j.tet.2010.02.052] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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19
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Kowalczuk J, Jarosz S, Tritt-Goc J. Characterization of low molecular-weight gelator methyl-4,6-O-(p-nitrobenzylidene)-α-d-glucopyranoside hydrogels and water diffusion in their networks. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.09.073] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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