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Harper JM. Primary Cell Culture as a Model System for Evolutionary Molecular Physiology. Int J Mol Sci 2024; 25:7905. [PMID: 39063147 PMCID: PMC11277064 DOI: 10.3390/ijms25147905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 07/06/2024] [Accepted: 07/09/2024] [Indexed: 07/28/2024] Open
Abstract
Primary cell culture is a powerful model system to address fundamental questions about organismal physiology at the cellular level, especially for species that are difficult, or impossible, to study under natural or semi-natural conditions. Due to their ease of use, primary fibroblast cultures are the dominant model system, but studies using both somatic and germ cells are also common. Using these models, genome evolution and phylogenetic relationships, the molecular and biochemical basis of differential longevities among species, and the physiological consequences of life history evolution have been studied in depth. With the advent of new technologies such as gene editing and the generation of induced pluripotent stem cells (iPSC), the field of molecular evolutionary physiology will continue to expand using both descriptive and experimental approaches.
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Affiliation(s)
- James M Harper
- Department of Biological Sciences, Sam Houston State University, 1900 Avenue I, Huntsville, TX 77341, USA
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Madelaire CB, Klink AC, Israelsen WJ, Hindle AG. Fibroblasts as an experimental model system for the study of comparative physiology. Comp Biochem Physiol B Biochem Mol Biol 2022; 260:110735. [PMID: 35321853 DOI: 10.1016/j.cbpb.2022.110735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 03/15/2022] [Accepted: 03/17/2022] [Indexed: 10/18/2022]
Abstract
Mechanistic evaluations of processes that underlie organism-level physiology often require reductionist approaches. Dermal fibroblasts offer one such approach. These cells are easily obtained from minimally invasive skin biopsy, making them appropriate for the study of protected and/or logistically challenging species. Cell culture approaches permit extensive and fine-scale sampling regimes as well as gene manipulation techniques that are not feasible in vivo. Fibroblast isolation and culture protocols are outlined here for primary cells, and the benefits and drawbacks of immortalization are discussed. We show examples of physiological metrics that can be used to characterize primary cells (oxygen consumption, translation, proliferation) and readouts that can be informative in understanding cell-level responses to environmental stress (lactate production, heat shock protein induction). Importantly, fibroblasts may display fidelity to whole animal physiological phenotypes, facilitating their study. Fibroblasts from Antarctic Weddell seals show greater resilience to low temperatures and hypoxia exposure than fibroblasts from humans or rats. Fibroblast oxygen consumption rates are not affected by temperature stress in the heat-tolerant camel, whereas similar temperature exposures depress mitochondrial metabolism in fibroblasts from rhinoceros. Finally, dermal fibroblasts from a hibernator, the meadow jumping mouse, better resist experimental cooling than a fibroblast line from the laboratory mouse, with the hibernator demonstrating a greater maintenance of homeostatic processes such as protein translation. These results exemplify the parallels that can be drawn between fibroblast physiology and expectations in vivo, and provide evidence for the power of fibroblasts as a model system to understand comparative physiology and biomedicine.
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Affiliation(s)
- Carla B Madelaire
- School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA
| | - Amy C Klink
- School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA
| | - William J Israelsen
- Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA; Skroot Laboratory, Inc., Ames, IA, USA
| | - Allyson G Hindle
- School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, USA.
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Beattie UK, Jimenez AG. Oxidative stress does not differ in primary dermal fibroblasts isolated from fast-growing and control-growing Japanese Quail ( Coturnix japonica). CAN J ZOOL 2019. [DOI: 10.1139/cjz-2018-0230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Growth rate is a key life-history trait that influences fitness and shapes the physiology of organisms. Additionally, faster growing individuals of the same species seem to be burdened with higher whole-animal metabolism and higher cellular turnover rates, which may lead to increases in oxidative stress, though this fact remains controversial within the literature. Aerobic organisms are subjected to metabolic by-products known as reactive oxygen species (ROS), which can wreak havoc on macromolecules, such as structurally altering proteins and inducing mutations in DNA, among others. To combat accumulating damage, organisms have evolved endogenous antioxidants and can consume exogenous antioxidants to sequester ROS before they cause cellular damage. We used primary fibroblast cells isolated from control-growing and fast-growing Japanese Quail (Coturnix japonica Temminck and Schlegel, 1849) as a study model for the effects of differing growth rates on oxidative stress. We measured reduced glutathione (GSH) concentration, ROS production, mitochondrial content, and lipid peroxidation (LPO) damage. We found no significant differences in the four parameters measured between control-growing and fast-growing Quail. However, we found that in fast-growing Quail, GSH correlated with LPO damage and mitochondrial content, and LPO damage positively correlated with mitochondrial content, whereas control-growing Quail only showed positive relationships between LPO damage and ROS production.
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Affiliation(s)
- Ursula Konstantin Beattie
- Colgate University, Department of Biology, 13 Oak Drive, Hamilton, NY 13346, USA
- Colgate University, Department of Biology, 13 Oak Drive, Hamilton, NY 13346, USA
| | - Ana Gabriela Jimenez
- Colgate University, Department of Biology, 13 Oak Drive, Hamilton, NY 13346, USA
- Colgate University, Department of Biology, 13 Oak Drive, Hamilton, NY 13346, USA
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Gabriela Jimenez A. "The Same Thing That Makes You Live Can Kill You in the End": Exploring the Effects of Growth Rates and Longevity on Cellular Metabolic Rates and Oxidative Stress in Mammals and Birds. Integr Comp Biol 2019; 58:544-558. [PMID: 29982421 DOI: 10.1093/icb/icy090] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
All aerobic organisms are subjected to metabolic by-products known as reactive species (RS). RS can wreak havoc on macromolecules by structurally altering proteins and inducing mutations in DNA, among other deleterious effects. To combat accumulating damage, organisms have an antioxidant system to sequester RS before they cause cellular damage. The balance between RS production, antioxidant defences, and accumulated cellular damage is termed oxidative stress. Physiological ecologists, gerontologists, and metabolic biochemists have turned their attention to whether oxidative stress is the principal, generalized mechanism that mediates and limits longevity, growth rates, and other life-history trade-offs in animals, as may be the case in mammals and birds. At the crux of this theory lies the regulation and activities of the mitochondria with respect to the organism and its metabolic rate. At the whole-animal level, evolutionary theory suggests that developmental trajectories and growth rates can shape the onset and rate of aging. Mitochondrial function is important for aging since it is the main source of energy in cells, and the main source of RS. Altering oxidative stress levels, either increase in oxidative damage or reduction in antioxidants, has proven to also decrease growth rates, which implies that oxidative stress is a cost of, as well as a constraint on, growth. Yet, in nature, many animals exhibit fast growth rates that lead to higher loads of oxidative stress, which are often linked to shorter lifespans. In this article, I summarize the latest findings on whole-animal life history trade-offs, such as growth rates and longevity, and how these can be affected by mitochondrial cellular metabolism, and oxidative stress.
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Velando A, Noguera JC, da Silva A, Kim SY. Redox-regulation and life-history trade-offs: scavenging mitochondrial ROS improves growth in a wild bird. Sci Rep 2019; 9:2203. [PMID: 30778088 PMCID: PMC6379414 DOI: 10.1038/s41598-019-38535-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 12/19/2018] [Indexed: 12/27/2022] Open
Abstract
It has been proposed that animals usually restrain their growth because fast growth leads to an increased production of mitochondrial reactive oxygen species (mtROS), which can damage mitochondrial DNA and promote mitochondrial dysfunction. Here, we explicitly test whether this occurs in a wild bird by supplementing chicks with a mitochondria-targeted ROS scavenger, mitoubiquinone (mitoQ), and examining growth rates and mtDNA damage. In the yellow-legged gull Larus michahellis, mitoQ supplementation increased the early growth rate of chicks but did not reduce mtDNA damage. The level of mtDNA damage was negatively correlated with chick mass, but this relationship was not affected by the mitoQ treatment. We also found that chick growth was positively correlated with both mtDNA copy number and the mitochondrial enzymatic activity of citrate synthase, suggesting a link between mitochondrial content and growth. Additionally, we found that MitoQ supplementation increased mitochondrial content (in males), altered the relationship between mtDNA copy number and damage, and downregulated some transcriptional pathways related to cell rejuvenation, suggesting that scavenging mtROS during development enhanced growth rates but at the expense of cellular turnover. Our study confirms the central role of mitochondria modulating life-history trade-offs during development by other mechanisms than mtROS-inflicted damage.
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Affiliation(s)
- Alberto Velando
- Animal Ecology Group (GEA), Lab 97, Torre CACTI, Campus As Lagoas, Universidade de Vigo, Vigo, Spain.
| | - Jose C Noguera
- Animal Ecology Group (GEA), Lab 97, Torre CACTI, Campus As Lagoas, Universidade de Vigo, Vigo, Spain
| | - Alberto da Silva
- Animal Ecology Group (GEA), Lab 97, Torre CACTI, Campus As Lagoas, Universidade de Vigo, Vigo, Spain
| | - Sin-Yeon Kim
- Animal Ecology Group (GEA), Lab 97, Torre CACTI, Campus As Lagoas, Universidade de Vigo, Vigo, Spain
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Winward JD, Ragan CM, Jimenez AG. Cellular metabolic rates and oxidative stress profiles in primary fibroblast cells isolated from virgin females, reproductively experienced females, and male Sprague-Dawley rats. Physiol Rep 2018; 6:e13909. [PMID: 30350353 PMCID: PMC6198133 DOI: 10.14814/phy2.13909] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Revised: 10/03/2018] [Accepted: 10/04/2018] [Indexed: 12/28/2022] Open
Abstract
Life-history theory posits that differences in reproductive strategies may dictate lifespans of organisms. Animals that have higher investments in reproduction in terms of litter size and frequency of litters tend to have shorter lifespans. The accumulation of oxidative stress damage has been proposed to be a cost of reproduction and a mediator of life-histories among animals, however, the implications of reproduction on oxidative stress still remain unclear. We tested physiological consequences of reproduction on metabolism and oxidative stress of Sprague-Dawley Rats (Rattus norvegicus) with various reproductive experiences at the cell level. We grew primary dermal fibroblasts from Sprague-Dawley rats which have the potential of having large litters frequently. Cells were isolated from virgin females, primiparous females, multiparous females, and reproductively-experienced males. We measured basal oxygen consumption (OCR), proton leak, ATP production, spare respiratory capacity, coupling efficiency and glycolysis using a Seahorse XF96 oxygen flux analyzer. Additionally, we measured rates of RS (reactive species) production, reduced glutathione (GSH), mitochondrial content, and lipid peroxidation (LPO) damage to quantify oxidative stress. There were no significant differences in any OCR or glycolytic parameters across any of our groups. However, reproductively-experienced females had significantly lower rates of LPO damage as compared with virgin females and males, as well as nonsignificant decreases in GSH concentration. Decreases in LPO damage and GSH indicate that reproductively-experienced females potentially use their endogenous antioxidant system to combat delirious effects of increased metabolism during reproduction. Our results suggest that reproduction may, in fact, have a protective effect in females.
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Affiliation(s)
- Joshua D. Winward
- Department of BiologyColgate UniversityHamiltonNew York
- Department of PsychologyNeuroscience ProgramColgate UniversityHamiltonNew York
| | - Christina M. Ragan
- Department of PsychologyNeuroscience ProgramColgate UniversityHamiltonNew York
- Present address:
Psychology DepartmentPurdue University NorthwestWestvilleIndiana
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Stier A, Romestaing C, Schull Q, Lefol E, Robin J, Roussel D, Bize P. How to measure mitochondrial function in birds using red blood cells: a case study in the king penguin and perspectives in ecology and evolution. Methods Ecol Evol 2017. [DOI: 10.1111/2041-210x.12724] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Antoine Stier
- Institute of Biodiversity, Animal Health and Comparative Medicine University of Glasgow Glasgow UK
| | - Caroline Romestaing
- Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés CNRS UMR 5023 Université de Lyon Lyon France
| | - Quentin Schull
- Université de Strasbourg CNRS IPHC UMR 7178 F‐67000 Strasbourg France
| | - Emilie Lefol
- Université de Strasbourg CNRS IPHC UMR 7178 F‐67000 Strasbourg France
- Département de biologie Université de Sherbrooke 2500 boul. de l'Université Sherbrooke QC Canada J1K 2R1
| | | | - Damien Roussel
- Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés CNRS UMR 5023 Université de Lyon Lyon France
| | - Pierre Bize
- Institute of Biological and Environmental Sciences University of Aberdeen Aberdeen UK
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Perspectives on the membrane fatty acid unsaturation/pacemaker hypotheses of metabolism and aging. Chem Phys Lipids 2015; 191:48-60. [PMID: 26291495 DOI: 10.1016/j.chemphyslip.2015.08.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 08/10/2015] [Accepted: 08/12/2015] [Indexed: 12/27/2022]
Abstract
The membrane pacemaker hypotheses of metabolism and aging are distinct, but interrelated hypotheses positing that increases in unsaturation of lipids within membranes are correlated with increasing basal metabolic rate and decreasing longevity, respectively. The two hypotheses each have evidence that either supports or contradicts them, but consensus has failed to emerge. In this review, we identify sources of weakness of previous studies supporting and contradicting these hypotheses and suggest different methods and lines of inquiry. The link between fatty acyl composition of membranes and membrane-bound protein activity is a central tenet of the membrane pacemaker hypothesis of metabolism, but the mechanism by which unsaturation would change protein activity is not well defined and, whereas fatty acid desaturases have been put forward by some as the mechanism behind evolutionary differences in fatty acyl composition of phospholipids among organisms, there have been no studies to differentiate whether desaturases have been more affected by natural selection on aging and metabolic rate than have elongases or acyltransferases. Past analyses have been hampered by potentially incorrect estimates of the peroxidizability of lipids and longevity of study animals, and by the confounding effect of phylogeny. According to some authors, body mass may also be a confounding effect that should be taken into account, though this is not universally accepted. Further research on this subject should focus more on mechanisms and take weaknesses of past studies into account.
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The metabolic rate of cultured muscle cells from hybrid Coturnix quail is intermediate to that of muscle cells from fast-growing and slow-growing Coturnix quail. J Comp Physiol B 2015; 185:547-57. [DOI: 10.1007/s00360-015-0906-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Revised: 04/15/2015] [Accepted: 04/26/2015] [Indexed: 10/23/2022]
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Saleem A, Safdar A, Kitaoka Y, Ma X, Marquez OS, Akhtar M, Nazli A, Suri R, Turnbull J, Tarnopolsky MA. Polymerase gamma mutator mice rely on increased glycolytic flux for energy production. Mitochondrion 2015; 21:19-26. [DOI: 10.1016/j.mito.2014.12.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2014] [Revised: 12/01/2014] [Accepted: 12/04/2014] [Indexed: 12/25/2022]
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Jimenez AG, Williams JB. Cellular metabolic rates from primary dermal fibroblast cells isolated from birds of different body masses. Comp Biochem Physiol A Mol Integr Physiol 2014; 176:41-8. [PMID: 25038299 DOI: 10.1016/j.cbpa.2014.07.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2014] [Revised: 06/14/2014] [Accepted: 07/09/2014] [Indexed: 11/19/2022]
Abstract
The rate of metabolism is the speed at which organisms use energy, an integration of energy transformations within the body; it governs biological processes that influence rates of growth and reproduction. Progress at understanding functional linkages between whole organism metabolic rate and underlying mechanisms that influence its magnitude has been slow despite the central role this issue plays in evolutionary and physiological ecology. Previous studies that have attempted to relate how cellular processes translate into whole-organism physiology have done so over a range of body masses of subjects. However, the data still remains controversial when observing metabolic rates at the cellular level. To bridge the gap between these ideas, we examined cellular metabolic rate of primary dermal fibroblasts isolated from 49 species of birds representing a 32,000-fold range in body masses to test the hypothesis that metabolic rate of cultured cells scales with body size. We used a Seahorse XF-96 Extracellular flux analyzer to measure cellular respiration in fibroblasts. Additionally, we measured fibroblast size and mitochondrial content. We found no significant correlation between cellular metabolic rate, cell size, or mitochondrial content and body mass. Additionally, there was a significant relationship between cellular basal metabolic rate and proton leak in these cells. We conclude that metabolic rate of cells isolated in culture does not scale with body mass, but cellular metabolic rate is correlated to growth rate in birds.
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Affiliation(s)
- Ana Gabriela Jimenez
- Department of Evolution, Ecology and Organismal Biology, Ohio State University, 318 W. 12th Ave., Columbus, OH 43210, USA.
| | - Joseph B Williams
- Department of Evolution, Ecology and Organismal Biology, Ohio State University, 318 W. 12th Ave., Columbus, OH 43210, USA
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Physiological underpinnings associated with differences in pace of life and metabolic rate in north temperate and neotropical birds. J Comp Physiol B 2014; 184:545-61. [PMID: 24671698 DOI: 10.1007/s00360-014-0825-0] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Revised: 02/28/2014] [Accepted: 03/05/2014] [Indexed: 12/11/2022]
Abstract
Animal life-history traits fall within limited ecological space with animals that have high reproductive rates having short lives, a continuum referred to as a "slow-fast" life-history axis. Animals of the same body mass at the slow end of the life-history continuum are characterized by low annual reproductive output and low mortality rate, such as is found in many tropical birds, whereas at the fast end, rates of reproduction and mortality are high, as in temperate birds. These differences in life-history traits are thought to result from trade-offs between investment in reproduction or self-maintenance as mediated by the biotic and abiotic environment. Thus, tropical and temperate birds provide a unique system to examine physiological consequences of life-history trade-offs at opposing ends of the "pace of life" spectrum. We have explored the implications of these trade-offs at several levels of physiological organization including whole-animal, organ systems, and cells. Tropical birds tend to have higher survival, slower growth, lower rates of whole-animal basal metabolic rate and peak metabolic rate, and smaller metabolically active organs compared with temperate birds. At the cellular level, primary dermal fibroblasts from tropical birds tend to have lower cellular metabolic rates and appear to be more resistant to oxidative cell stress than those of temperate birds. However, at the subcellular level, lipid peroxidation rates, a measure of the ability of lipid molecules within the cell membranes to thwart the propagation of oxidative damage, appear not to be different between tropical and temperate species. Nevertheless, lipids in mitochondrial membranes of tropical birds tend to have increased concentrations of plasmalogens (phospholipids with antioxidant properties), and decreased concentrations of cardiolipin (a complex phospholipid in the electron transport chain) compared with temperate birds.
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