1
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Okamoto Y, Mabuchi T, Nakane K, Ueno A, Sato S. Switching Type I/Type II Reactions by Turning a Photoredox Catalyst into a Photo-Driven Artificial Metalloenzyme. ACS Catal 2023. [DOI: 10.1021/acscatal.2c05946] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Affiliation(s)
- Yasunori Okamoto
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Aramaki aza Aoba 6-3, Aoba-ku, Sendai 980-8578, Japan
| | - Takuya Mabuchi
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Aramaki aza Aoba 6-3, Aoba-ku, Sendai 980-8578, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Keita Nakane
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
| | - Akiko Ueno
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Aramaki aza Aoba 6-3, Aoba-ku, Sendai 980-8578, Japan
| | - Shinichi Sato
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, Aramaki aza Aoba 6-3, Aoba-ku, Sendai 980-8578, Japan
- Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira,
Aoba-ku, Sendai 980-8577, Japan
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2
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Opdam LV, Polanco EA, de Regt B, Lambertina N, Bakker C, Bonnet S, Pandit A. A screening method for binding synthetic metallo-complexes to haem proteins. Anal Biochem 2022; 653:114788. [PMID: 35732212 DOI: 10.1016/j.ab.2022.114788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 06/08/2022] [Accepted: 06/11/2022] [Indexed: 11/17/2022]
Abstract
The introduction of a second coordination sphere, in the form of a protein scaffold, to synthetic catalysts can be beneficial for their reactivity and substrate selectivity. Here we present semi-native polyacrylamide gel electrophoresis (semi-native PAGE) as a rapid screening method for studying metal complex-protein interactions. Such a screening is generally performed using electron spray ionization mass spectrometry (ESI-MS) and/or UV-Vis spectroscopy. Semi-native PAGE analysis has the advantage that it does not rely on spectral changes of the metal complex upon protein interaction and can be applied for high-throughput screening and optimization of complex binding. In semi-native PAGE non-denatured protein samples are loaded on a gel containing sodium dodecyl sulphate (SDS), leading to separation based on differences in structural stability. Semi-native PAGE gel runs of catalyst-protein mixtures were compared to gel runs obtained with native and denaturing PAGE. ESI-MS was additionally realised to confirm protein-complex binding. The general applicability of semi-native PAGE was investigated by screening the binding of various cobalt- and ruthenium-based compounds to three types of haem proteins.
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Affiliation(s)
- Laura V Opdam
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Ehider A Polanco
- MCBIM Departments, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Boyd de Regt
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | | | - Cas Bakker
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Sylvestre Bonnet
- MCBIM Departments, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Anjali Pandit
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands.
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3
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Oohora K, Hayashi T. Myoglobins engineered with artificial cofactors serve as artificial metalloenzymes and models of natural enzymes. Dalton Trans 2021; 50:1940-1949. [PMID: 33433532 DOI: 10.1039/d0dt03597a] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Metalloenzymes naturally achieve various reactivities by assembling limited types of cofactors with endogenous amino acid residues. Enzymes containing metal porphyrinoid cofactors such as heme, cobalamin and F430 exert precise control over the reactivities of the cofactors with protein matrices. This perspective article focuses on our recent efforts to assemble metal complexes of non-natural porphyrinoids within the protein matrix of myoglobin, an oxygen storage hemoprotein. Engineered myoglobins with suitable metal complexes as artificial cofactors demonstrate unique reactivities toward C-H bond hydroxylation, olefin cyclopropanation, methyl group transfer and methane generation. In these cases, the protein matrix enhances the catalytic activities of the cofactors and allows us to monitor the active intermediates. The present findings indicate that placing artificial cofactors in protein matrices provides a useful strategy for creating artificial metalloenzymes that catalyse otherwise unfavourable reactions and providing enzyme models for elucidating the complicated reaction mechanisms of natural enzymes.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, 565-0871, Japan.
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4
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Miller KR, Biswas S, Jasniewski A, Follmer AH, Biswas A, Albert T, Sabuncu S, Bominaar EL, Hendrich MP, Moënne-Loccoz P, Borovik AS. Artificial Metalloproteins with Dinuclear Iron-Hydroxido Centers. J Am Chem Soc 2021; 143:2384-2393. [PMID: 33528256 DOI: 10.1021/jacs.0c12564] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Dinuclear iron centers with a bridging hydroxido or oxido ligand form active sites within a variety of metalloproteins. A key feature of these sites is the ability of the protein to control the structures around the Fe centers, which leads to entatic states that are essential for function. To simulate this controlled environment, artificial proteins have been engineered using biotin-streptavidin (Sav) technology in which Fe complexes from adjacent subunits can assemble to form [FeIII-(μ-OH)-FeIII] cores. The assembly process is promoted by the site-specific localization of the Fe complexes within a subunit through the designed mutation of a tyrosinate side chain to coordinate the Fe centers. An important outcome is that the Sav host can regulate the Fe···Fe separation, which is known to be important for function in natural metalloproteins. Spectroscopic and structural studies from X-ray diffraction methods revealed uncommonly long Fe···Fe separations that change by less than 0.3 Å upon the binding of additional bridging ligands. The structural constraints imposed by the protein host on the di-Fe cores are unique and create examples of active sites having entatic states within engineered artificial metalloproteins.
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Affiliation(s)
- Kelsey R Miller
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Saborni Biswas
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Andrew Jasniewski
- Department of Molecular Biology and Biochemistry, University of California, Irvine, California 92697, United States
| | - Alec H Follmer
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Ankita Biswas
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
| | - Therese Albert
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - Sinan Sabuncu
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - Emile L Bominaar
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Michael P Hendrich
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, Pennsylvania 15213, United States
| | - Pierre Moënne-Loccoz
- Department of Biochemistry and Molecular Biology, Oregon Health & Science University, Mail Code HRC3, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, United States
| | - A S Borovik
- Department of Chemistry, 1102 Natural Sciences II, University of California, Irvine, California 92697, United States
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5
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Himiyama T, Okamoto Y. Artificial Metalloenzymes: From Selective Chemical Transformations to Biochemical Applications. Molecules 2020; 25:molecules25132989. [PMID: 32629938 PMCID: PMC7411666 DOI: 10.3390/molecules25132989] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 06/26/2020] [Accepted: 06/27/2020] [Indexed: 11/16/2022] Open
Abstract
Artificial metalloenzymes (ArMs) comprise a synthetic metal complex in a protein scaffold. ArMs display performances combining those of both homogeneous catalysts and biocatalysts. Specifically, ArMs selectively catalyze non-natural reactions and reactions inspired by nature in water under mild conditions. In the past few years, the construction of ArMs that possess a genetically incorporated unnatural amino acid and the directed evolution of ArMs have become of great interest in the field. Additionally, biochemical applications of ArMs have steadily increased, owing to the fact that compartmentalization within a protein scaffold allows the synthetic metal complex to remain functional in a sea of inactivating biomolecules. In this review, we present updates on: 1) the newly reported ArMs, according to their type of reaction, and 2) the unique biochemical applications of ArMs, including chemoenzymatic cascades and intracellular/in vivo catalysis. We believe that ArMs have great potential as catalysts for organic synthesis and as chemical biology tools for pharmaceutical applications.
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Affiliation(s)
- Tomoki Himiyama
- National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan;
- DBT-AIST International Laboratory for Advanced Biomedicine (DAILAB), Ikeda, Osaka 563-8577, Japan
| | - Yasunori Okamoto
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, 6-3 Aramaki aza Aoba, Aoba-ku, Sendai 980-8578, Japan
- Correspondence: ; Tel.: +81-22-795-5264
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6
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Jeong WJ, Yu J, Song WJ. Proteins as diverse, efficient, and evolvable scaffolds for artificial metalloenzymes. Chem Commun (Camb) 2020; 56:9586-9599. [DOI: 10.1039/d0cc03137b] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
We have extracted and categorized the desirable properties of proteins that are adapted as the scaffolds for artificial metalloenzymes.
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Affiliation(s)
- Woo Jae Jeong
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
| | - Jaeseung Yu
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
| | - Woon Ju Song
- Department of Chemistry
- Seoul National University
- Seoul 08826
- Republic of Korea
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7
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Chen W, Li S, Li X, Zhang C, Hu X, Zhu F, Shen G, Feng F. Iron sulfur clusters in protein nanocages for photocatalytic hydrogen generation in acidic aqueous solutions. Chem Sci 2019; 10:2179-2185. [PMID: 30881642 PMCID: PMC6385480 DOI: 10.1039/c8sc05293j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 12/15/2018] [Indexed: 12/11/2022] Open
Abstract
We took advantage of the iron binding affinity of apoferritin to immobilize iron-sulfur clusters into apoferritin up to 312 moieties per protein, with a loading rate as high as 25 wt%. The photocatalytic hydrogen generation activity in acidic aqueous solutions was achieved with TONs up to 31 (based on a single catalyst moiety) or 8.3 × 103 (based on a single protein) upon 3 h of visible light irradiation. The present study provides a versatile strategy to construct uniform protein/photocatalyst supramolecular systems with FeFe-H2ase activity.
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Affiliation(s)
- Weijian Chen
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Shuyi Li
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Xiao Li
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Chi Zhang
- School of Chemistry & Chemical Engineering , Shangqiu Normal University , Shangqiu 476000 , China
| | - Xiantao Hu
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Fan Zhu
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Guosong Shen
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
| | - Fude Feng
- Key Laboratory of High Performance Polymer Material and Technology of Ministry of Education , Department of Polymer Science & Engineering , School of Chemistry & Chemical Engineering , Nanjing University , Nanjing 210023 , China .
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8
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Khan AZ, Bilal M, Rasheed T, Iqbal HM. Advancements in biocatalysis: From computational to metabolic engineering. CHINESE JOURNAL OF CATALYSIS 2018. [DOI: 10.1016/s1872-2067(18)63144-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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9
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Liu C, Xu J, Gao SQ, He B, Wei CW, Wang XJ, Wang Z, Lin YW. Green and efficient biosynthesis of indigo from indole by engineered myoglobins. RSC Adv 2018; 8:33325-33330. [PMID: 35548150 PMCID: PMC9086478 DOI: 10.1039/c8ra07825d] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 09/21/2018] [Indexed: 11/21/2022] Open
Abstract
With the demand nowadays for blue dyes, it is of practical importance to develop a green and efficient biocatalyst for the production of indigo. The design of artificial enzymes has been shown to be attractive in recent years. In a previous study, we engineered a single mutant of sperm whale myoglobin, F43Y Mb, with a novel Tyr-heme cross-link. In this study, we found that it can efficiently catalyze the oxidation of indole to indigo, with a yield as high as 54% compared to the highest yield (∼20%) reported to date in the literature. By further modifying the heme active site, we engineered a double mutant of F43Y/H64D Mb, which exhibited the highest catalytic efficiency (198 M-1 s-1) among the artificial enzymes designed in Mb. Moreover, both F43Y Mb and F43Y/H64D Mb were found to produce the indigo product with a chemoselectivity as high as ∼80%. Based on the reaction system, we also established a convenient and green dyeing method by dyeing a cotton textile during the biosynthesis of indigo, followed by further spraying the concentrated indigo, without the need of strong acids/bases or any reducing agents. The successful application of dyeing a white cotton textile with a blue color further indicates that the designed enzyme and the dyeing method have practical applications in the future.
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Affiliation(s)
- Can Liu
- School of Chemistry and Chemical Engineering, University of South China Hengyang 421001 China
| | - Jiakun Xu
- Yellow Sea Fisheries Research Institute Qingdao 266071 China
| | - Shu-Qin Gao
- Laboratory of Protein Structure and Function, University of South China Hengyang 421001 China
| | - Bo He
- School of Chemistry and Chemical Engineering, University of South China Hengyang 421001 China
| | - Chuan-Wan Wei
- School of Chemistry and Chemical Engineering, University of South China Hengyang 421001 China
| | - Xiao-Juan Wang
- School of Chemistry and Chemical Engineering, University of South China Hengyang 421001 China
| | - Zhonghua Wang
- College of Chemistry and Chemical Engineering, China West Normal University Nanchong 637002 China
| | - Ying-Wu Lin
- School of Chemistry and Chemical Engineering, University of South China Hengyang 421001 China
- Laboratory of Protein Structure and Function, University of South China Hengyang 421001 China
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10
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Tang J, Huang F, Wei Y, Bian H, Zhang W, Liang H. Bovine serum albumin-cobalt(ii) Schiff base complex hybrid: an efficient artificial metalloenzyme for enantioselective sulfoxidation using hydrogen peroxide. Dalton Trans 2018; 45:8061-72. [PMID: 27075699 DOI: 10.1039/c5dt04507j] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
An artificial metalloenzyme (BSA-CoL) based on the incorporation of a cobalt(ii) Schiff base complex {CoL, H2L = 2,2'-[(1,2-ethanediyl)bis(nitrilopropylidyne)]bisphenol} with bovine serum albumin (BSA) has been synthesized and characterized. Attention is focused on the catalytic activity of this artificial metalloenzyme for enantioselective oxidation of a variety of sulfides with H2O2. The influences of parameters such as pH, temperature, and the concentration of catalyst and oxidant on thioanisole as a model are investigated. Under optimum conditions, BSA-CoL as a hybrid biocatalyst is efficient for the enantioselective oxidation of a series of sulfides, producing the corresponding sulfoxides with excellent conversion (up to 100%), chemoselectivity (up to 100%) and good enantiomeric purity (up to 87% ee) in certain cases.
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Affiliation(s)
- Jie Tang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China. and Guilin Normal College, Guilin 541001, P. R. China
| | - Fuping Huang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Yi Wei
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Hedong Bian
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China. and School of Chemistry and Chemical Engineering, Guangxi University for Nationalities, Key Laboratory of Chemistry and Engineering of Forest Products, Nanning, 530008, P. R. China.
| | - Wei Zhang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
| | - Hong Liang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (School of Chemistry and Pharmacy, Guangxi Normal University), Guilin, 541004, P. R. China.
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11
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Ferritin based bionanocages as novel biomemory device concept. Biosens Bioelectron 2018; 103:19-25. [DOI: 10.1016/j.bios.2017.12.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 12/04/2017] [Accepted: 12/06/2017] [Indexed: 01/03/2023]
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12
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Yu Y, Hu C, Xia L, Wang J. Artificial Metalloenzyme Design with Unnatural Amino Acids and Non-Native Cofactors. ACS Catal 2018. [DOI: 10.1021/acscatal.7b03754] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Yang Yu
- Tianjin
Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Cheng Hu
- Laboratory
of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, Beijing 100101, China
| | - Lin Xia
- Center
for Synthetic Biology Engineering Research, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, China
| | - Jiangyun Wang
- Laboratory
of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, Beijing 100101, China
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13
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Hestericová M, Heinisch T, Lenz M, Ward TR. Ferritin encapsulation of artificial metalloenzymes: engineering a tertiary coordination sphere for an artificial transfer hydrogenase. Dalton Trans 2018; 47:10837-10841. [DOI: 10.1039/c8dt02224k] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Creating a tertiary coordination sphere around a transition metal catalyst incorporated within a protein affects its catalytic turnover and enantioselectivity.
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Affiliation(s)
| | | | - Markus Lenz
- Institute for Ecopreneurship
- School of Life Sciences
- University of Applied Sciences and Arts Northwestern Switzerland
- Muttenz
- Switzerland
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14
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Affiliation(s)
- Yasunori Okamoto
- Department of Chemistry; University of Basel; Spitalstrasse 51 4056 Basel Switzerland
| | - Thomas R. Ward
- Department of Chemistry; University of Basel; Spitalstrasse 51 4056 Basel Switzerland
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15
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Okamoto Y, Ward TR. Cross-Regulation of an Artificial Metalloenzyme. Angew Chem Int Ed Engl 2017; 56:10156-10160. [PMID: 28485105 PMCID: PMC5575532 DOI: 10.1002/anie.201702181] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Revised: 04/26/2017] [Indexed: 11/18/2022]
Abstract
Cross-regulation of complex biochemical reaction networks is an essential feature of living systems. In a biomimetic spirit, we report on our efforts to program the temporal activation of an artificial metalloenzyme via cross-regulation by a natural enzyme. In the presence of urea, urease slowly releases ammonia that reversibly inhibits an artificial transfer hydrogenase. Addition of an acid, which acts as fuel, allows to maintain the system out of equilibrium.
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Affiliation(s)
- Yasunori Okamoto
- Department of ChemistryUniversity of BaselSpitalstrasse 514056BaselSwitzerland
| | - Thomas R. Ward
- Department of ChemistryUniversity of BaselSpitalstrasse 514056BaselSwitzerland
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16
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Schwizer F, Okamoto Y, Heinisch T, Gu Y, Pellizzoni MM, Lebrun V, Reuter R, Köhler V, Lewis JC, Ward TR. Artificial Metalloenzymes: Reaction Scope and Optimization Strategies. Chem Rev 2017; 118:142-231. [PMID: 28714313 DOI: 10.1021/acs.chemrev.7b00014] [Citation(s) in RCA: 500] [Impact Index Per Article: 71.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The incorporation of a synthetic, catalytically competent metallocofactor into a protein scaffold to generate an artificial metalloenzyme (ArM) has been explored since the late 1970's. Progress in the ensuing years was limited by the tools available for both organometallic synthesis and protein engineering. Advances in both of these areas, combined with increased appreciation of the potential benefits of combining attractive features of both homogeneous catalysis and enzymatic catalysis, led to a resurgence of interest in ArMs starting in the early 2000's. Perhaps the most intriguing of potential ArM properties is their ability to endow homogeneous catalysts with a genetic memory. Indeed, incorporating a homogeneous catalyst into a genetically encoded scaffold offers the opportunity to improve ArM performance by directed evolution. This capability could, in turn, lead to improvements in ArM efficiency similar to those obtained for natural enzymes, providing systems suitable for practical applications and greater insight into the role of second coordination sphere interactions in organometallic catalysis. Since its renaissance in the early 2000's, different aspects of artificial metalloenzymes have been extensively reviewed and highlighted. Our intent is to provide a comprehensive overview of all work in the field up to December 2016, organized according to reaction class. Because of the wide range of non-natural reactions catalyzed by ArMs, this was done using a functional-group transformation classification. The review begins with a summary of the proteins and the anchoring strategies used to date for the creation of ArMs, followed by a historical perspective. Then follows a summary of the reactions catalyzed by ArMs and a concluding critical outlook. This analysis allows for comparison of similar reactions catalyzed by ArMs constructed using different metallocofactor anchoring strategies, cofactors, protein scaffolds, and mutagenesis strategies. These data will be used to construct a searchable Web site on ArMs that will be updated regularly by the authors.
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Affiliation(s)
- Fabian Schwizer
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Yasunori Okamoto
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Tillmann Heinisch
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Yifan Gu
- Searle Chemistry Laboratory, University of Chicago , 5735 S. Ellis Ave., Chicago, Illinois 60637, United States
| | - Michela M Pellizzoni
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Vincent Lebrun
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Raphael Reuter
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Valentin Köhler
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
| | - Jared C Lewis
- Searle Chemistry Laboratory, University of Chicago , 5735 S. Ellis Ave., Chicago, Illinois 60637, United States
| | - Thomas R Ward
- Department of Chemistry, Spitalstrasse 51, University of Basel , CH-4056 Basel, Switzerland
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17
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Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids. Sci China Chem 2016. [DOI: 10.1007/s11426-016-0343-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Nastri F, Chino M, Maglio O, Bhagi-Damodaran A, Lu Y, Lombardi A. Design and engineering of artificial oxygen-activating metalloenzymes. Chem Soc Rev 2016; 45:5020-54. [PMID: 27341693 PMCID: PMC5021598 DOI: 10.1039/c5cs00923e] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Many efforts are being made in the design and engineering of metalloenzymes with catalytic properties fulfilling the needs of practical applications. Progress in this field has recently been accelerated by advances in computational, molecular and structural biology. This review article focuses on the recent examples of oxygen-activating metalloenzymes, developed through the strategies of de novo design, miniaturization processes and protein redesign. Considerable progress in these diverse design approaches has produced many metal-containing biocatalysts able to adopt the functions of native enzymes or even novel functions beyond those found in Nature.
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Affiliation(s)
- Flavia Nastri
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
| | - Marco Chino
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
| | - Ornella Maglio
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
- IBB, CNR, Via Mezzocannone 16, 80134 Naples, Italy
| | - Ambika Bhagi-Damodaran
- Department of Chemistry, University of Illinois at Urbana-Champaign, A322 CLSL, 600 South Mathews Avenue, Urbana, IL 61801
| | - Yi Lu
- Department of Chemistry, University of Illinois at Urbana-Champaign, A322 CLSL, 600 South Mathews Avenue, Urbana, IL 61801
| | - Angela Lombardi
- Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 80126 Naples, Italy
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19
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Long A, Rothenberg P, Patel D, MacDougall J, Hartings MR. The structure and peroxidase activity of myoglobin in alcoholic solvents. Polyhedron 2016. [DOI: 10.1016/j.poly.2015.11.028] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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20
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Okamoto Y, Köhler V, Paul CE, Hollmann F, Ward TR. Efficient In Situ Regeneration of NADH Mimics by an Artificial Metalloenzyme. ACS Catal 2016. [DOI: 10.1021/acscatal.6b00258] [Citation(s) in RCA: 81] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yasunori Okamoto
- Department
of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Valentin Köhler
- Department
of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Caroline E. Paul
- Department
of Biotechnology, Delft University of Technology, Julianalaan 136, 2628BL Delft, The Netherlands
| | - Frank Hollmann
- Department
of Biotechnology, Delft University of Technology, Julianalaan 136, 2628BL Delft, The Netherlands
| | - Thomas R. Ward
- Department
of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
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21
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Himiyama T, Sauer DF, Onoda A, Spaniol TP, Okuda J, Hayashi T. Construction of a hybrid biocatalyst containing a covalently-linked terpyridine metal complex within a cavity of aponitrobindin. J Inorg Biochem 2016; 158:55-61. [DOI: 10.1016/j.jinorgbio.2015.12.026] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Revised: 12/17/2015] [Accepted: 12/28/2015] [Indexed: 12/31/2022]
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22
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Okamoto Y, Köhler V, Ward TR. An NAD(P)H-Dependent Artificial Transfer Hydrogenase for Multienzymatic Cascades. J Am Chem Soc 2016; 138:5781-4. [PMID: 27100673 DOI: 10.1021/jacs.6b02470] [Citation(s) in RCA: 66] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Enzymes typically depend on either NAD(P)H or FADH2 as hydride source for reduction purposes. In contrast, organometallic catalysts most often rely on isopropanol or formate to generate the reactive hydride moiety. Here we show that incorporation of a Cp*Ir cofactor possessing a biotin moiety and 4,7-dihydroxy-1,10-phenanthroline into streptavidin yields an NAD(P)H-dependent artificial transfer hydrogenase (ATHase). This ATHase (0.1 mol%) catalyzes imine reduction with 1 mM NADPH (2 mol%), which can be concurrently regenerated by a glucose dehydrogenase (GDH) using only 1.2 equiv of glucose. A four-enzyme cascade consisting of the ATHase, the GDH, a monoamine oxidase, and a catalase leads to the production of enantiopure amines.
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Affiliation(s)
- Yasunori Okamoto
- Department of Chemistry, University of Basel , Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Valentin Köhler
- Department of Chemistry, University of Basel , Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Thomas R Ward
- Department of Chemistry, University of Basel , Spitalstrasse 51, CH-4056 Basel, Switzerland
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23
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Isozaki K, Yokoi T, Yoshida R, Ogata K, Hashizume D, Yasuda N, Sadakane K, Takaya H, Nakamura M. Synthesis and Applications of (ONO Pincer)Ruthenium-Complex-Bound Norvalines. Chem Asian J 2016; 11:1076-91. [PMID: 26879368 PMCID: PMC5069454 DOI: 10.1002/asia.201600045] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Indexed: 11/20/2022]
Abstract
Two (ONO pincer)ruthenium-complex-bound norvalines, Boc-[Ru(pydc)(terpy)]Nva-OMe (1; Boc=tert-butyloxycarbonyl, terpy=terpyridyl, Nva=norvaline) and Boc-[Ru(pydc)(tBu-terpy)]Nva-OMe (5), were successfully synthesized and their molecular structures and absolute configurations were unequivocally determined by single-crystal X-ray diffraction. The robustness of the pincer Ru complexes and norvaline scaffolds against acidic/basic, oxidizing, and high-temperature conditions enabled us to perform selective transformations of the N-Boc and C-OMe termini into various functional groups, such as alkyl amide, alkyl urea, and polyether groups, without the loss of the Ru center or enantiomeric purity. The resulting dialkylated Ru-bound norvaline, n-C11 H23 CO-l-[Ru(pydc)(terpy)]Nva-NH-n-C11 H23 (l-4) was found to have excellent self-assembly properties in organic solvents, thereby affording the corresponding supramolecular gels. Ru-bound norvaline l-1 exhibited a higher catalytic activity for the oxidation of alcohols by H2 O2 than parent complex [Ru(pydc)(terpy)] (11 a).
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Affiliation(s)
- Katsuhiro Isozaki
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186.
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan.
- JST CREST, Japan.
| | - Tomoya Yokoi
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
| | - Ryota Yoshida
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
| | - Kazuki Ogata
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan
| | - Daisuke Hashizume
- Materials Characterization Support Unit, RIKEN Center for Emergent Matter Science (CEMS), Wako, Saitama, 351-0198, Japan
| | | | - Koichiro Sadakane
- Department of Biomedical Information Faculty of Life and Medical Sciences, Doshisha University, 1-3 Tatara Miyakotani, Kyotanabe, Kyoto, 610-0321, Japan
| | - Hikaru Takaya
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186.
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan.
| | - Masaharu Nakamura
- International Research Center for Elements Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan), Fax: (+81) 774-38-3186.
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Nishikyo-ku, Kyoto, 615-8510, Japan.
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24
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Hestericová M, Correro MR, Lenz M, Corvini PFX, Shahgaldian P, Ward TR. Immobilization of an artificial imine reductase within silica nanoparticles improves its performance. Chem Commun (Camb) 2016; 52:9462-5. [DOI: 10.1039/c6cc04604e] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Immobilization and protection of artificial imine reductase in silica nanoparticles increases its activity and protects from various denaturing stresses.
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Affiliation(s)
| | - M. Rita Correro
- Institute of Chemistry and Bioanalytics
- School of Life Sciences
- University of Applied Sciences and Arts Northwestern Switzerland
- CH-4132 Muttenz
- Switzerland
| | - Markus Lenz
- Institute for Ecopreneurship
- School of Life Sciences
- University of Applied Sciences and Arts Northwestern Switzerland
- 4132 Muttenz
- Switzerland
| | - Philippe F.-X. Corvini
- Institute for Ecopreneurship
- School of Life Sciences
- University of Applied Sciences and Arts Northwestern Switzerland
- 4132 Muttenz
- Switzerland
| | - Patrick Shahgaldian
- Institute of Chemistry and Bioanalytics
- School of Life Sciences
- University of Applied Sciences and Arts Northwestern Switzerland
- CH-4132 Muttenz
- Switzerland
| | - Thomas R. Ward
- Department of Chemistry
- University of Basel
- CH-4056 Basel
- Switzerland
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25
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Yoshida R, Isozaki K, Yokoi T, Yasuda N, Sadakane K, Iwamoto T, Takaya H, Nakamura M. ONO-pincer ruthenium complex-bound norvaline for efficient catalytic oxidation of methoxybenzenes with hydrogen peroxide. Org Biomol Chem 2016; 14:7468-79. [DOI: 10.1039/c6ob00969g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A Ru-bound norvaline shows enhanced catalytic activity for the oxidation of methoxybenzenes with unique chemoselectivity.
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Affiliation(s)
- Ryota Yoshida
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
| | - Katsuhiro Isozaki
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
| | - Tomoya Yokoi
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
| | | | - Koichiro Sadakane
- Department of Biomedical Information
- Faculty of Life and Medical Sciences
- Doshisha University
- Kyotanabe
- Japan
| | - Takahiro Iwamoto
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
| | - Hikaru Takaya
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
| | - Masaharu Nakamura
- International Research Center for Elements Science
- Institute for Chemical Research
- Kyoto University
- Uji
- Japan
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26
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Yu Y, Cui C, Liu X, Petrik ID, Wang J, Lu Y. A Designed Metalloenzyme Achieving the Catalytic Rate of a Native Enzyme. J Am Chem Soc 2015; 137:11570-3. [PMID: 26318313 PMCID: PMC4676421 DOI: 10.1021/jacs.5b07119] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
![]()
Terminal
oxidases catalyze four-electron reduction of oxygen to
water, and the energy harvested is utilized to drive the synthesis
of adenosine triphosphate. While much effort has been made to design
a catalyst mimicking the function of terminal oxidases, most biomimetic
catalysts have much lower activity than native oxidases. Herein we
report a designed oxidase in myoglobin with an O2 reduction
rate (52 s–1) comparable to that of a native cytochrome
(cyt) cbb3 oxidase (50 s–1) under identical conditions. We achieved this goal by engineering
more favorable electrostatic interactions between a functional oxidase
model designed in sperm whale myoglobin and its native redox partner,
cyt b5, resulting in a 400-fold electron
transfer (ET) rate enhancement. Achieving high activity equivalent
to that of native enzymes in a designed metalloenzyme offers deeper
insight into the roles of tunable processes such as ET in oxidase
activity and enzymatic function and may extend into applications such
as more efficient oxygen reduction reaction catalysts for biofuel
cells.
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Affiliation(s)
| | | | - Xiaohong Liu
- Laboratory of Non-coding RNA, Institute of Biophysics, Chinese Academy of Sciences , 15 Datun Road, Chaoyang District, Beijing 100101, P. R. China
| | | | - Jiangyun Wang
- Laboratory of Non-coding RNA, Institute of Biophysics, Chinese Academy of Sciences , 15 Datun Road, Chaoyang District, Beijing 100101, P. R. China
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27
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Artificial hydrogenase: biomimetic approaches controlling active molecular catalysts. Curr Opin Chem Biol 2015; 25:133-40. [DOI: 10.1016/j.cbpa.2014.12.041] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Accepted: 12/29/2014] [Indexed: 01/13/2023]
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28
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Sato H, Yamaguchi M, Onuki T, Noguchi M, Newton GN, Shiga T, Oshio H. Pentanuclear and Octanuclear Manganese Helices. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500096] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Hiroki Sato
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Momoyo Yamaguchi
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Tatsuya Onuki
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Mao Noguchi
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Graham N. Newton
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Takuya Shiga
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
| | - Hiroki Oshio
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1‐1‐1 Tennodai, Tsukuba 305‐8577, Japan, http://nao.chem.tsukuba.ac.jp/oshio/
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29
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Mekmouche Y, Schneider L, Rousselot-Pailley P, Faure B, Simaan AJ, Bochot C, Réglier M, Tron T. Laccases as palladium oxidases. Chem Sci 2015; 6:1247-1251. [PMID: 29560210 PMCID: PMC5811087 DOI: 10.1039/c4sc02564d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Accepted: 11/10/2014] [Indexed: 11/21/2022] Open
Abstract
The first example of a coupled catalytic system involving an enzyme and a palladium(ii) catalyst competent for the aerobic oxidation of alcohol in mild conditions is described. In the absence of dioxygen, the fungal laccase LAC3 is reduced by a palladium(0) species as evidenced by the UV/VIS and ESR spectra of the enzyme. During the oxidation of veratryl alcohol performed in water, at room temperature and atmospheric pressure, LAC3 regenerates the palladium catalyst, is reduced and catalyzes the four-electron reduction of dioxygen into water with no loss of enzyme activity. The association of a laccase with a water-soluble palladium complex results in a 7-fold increase in the catalytic efficiency of the complex. This is the first step in the design of a family of renewable palladium catalysts for aerobic oxidation.
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Affiliation(s)
- Yasmina Mekmouche
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Ludovic Schneider
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Pierre Rousselot-Pailley
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Bruno Faure
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - A Jalila Simaan
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Constance Bochot
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Marius Réglier
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
| | - Thierry Tron
- Aix Marseille Université , CNRS , Centrale Marseille , ISM2 UMR 7313 , 13397 , Marseille , France . ;
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30
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New emerging bio-catalysts design in biotransformations. Biotechnol Adv 2015; 33:605-13. [PMID: 25560932 DOI: 10.1016/j.biotechadv.2014.12.010] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 12/18/2014] [Accepted: 12/18/2014] [Indexed: 11/21/2022]
Abstract
The development of new and successful biotransformation processes of key interest in medicinal and pharmaceutical chemistry involves creating new biocatalysts with improved or even new activities and selectivities. This review emphasizes the new emerging developed strategies to achieve this goal, site-selective chemical modification of enzymes using tailor-made peptides, specific insertion of metals or organometallic complexes into proteins producing bio-catalysts with multiple activities and computational design for creating evolved artificial enzymes with non-natural synthetic catalytic activities.
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31
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Tabe H, Fujita K, Abe S, Tsujimoto M, Kuchimaru T, Kizaka-Kondoh S, Takano M, Kitagawa S, Ueno T. Preparation of a cross-linked porous protein crystal containing Ru carbonyl complexes as a CO-releasing extracellular scaffold. Inorg Chem 2014; 54:215-20. [PMID: 25494847 DOI: 10.1021/ic502159x] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Protein crystals generally are stable solid protein assemblies. Certain protein crystals are suitable for use as nanovessels for immobilizing metal complexes. Here we report the preparation of ruthenium carbonyl-incorporated cross-linked hen egg white lysozyme crystals (Ru·CL-HEWL). Ru·CL-HEWL retains a Ru carbonyl moiety that can release CO, although a composite of Ru carbonyl-HEWL dissolved in buffer solution (Ru·HEWL) does not release CO. We found that treatment of cells with Ru·CL-HEWL significantly increased nuclear factor kappa B (NF-κB) activity as a cellular response to CO. These results demonstrate that Ru·CL-HEWL has potential for use as an artificial extracellular scaffold suitable for transport and release of a gas molecule.
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Affiliation(s)
- Hiroyasu Tabe
- Graduate School of Engineering, Kyoto University, Katsura , Nishikyo-ku, Kyoto 615-8510, Japan
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32
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Marchi-Delapierre C, Rondot L, Cavazza C, Ménage S. Oxidation Catalysis by Rationally Designed Artificial Metalloenzymes. Isr J Chem 2014. [DOI: 10.1002/ijch.201400110] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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33
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Sayin K, Karakaş D. The investigation of the solvent effect on coordination of nicotinato ligand with cobalt(II) complex containing tris(2-benzimidazolylmethyl)amine: A computational study. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.07.078] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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34
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Robles VM, Dürrenberger M, Heinisch T, Lledós A, Schirmer T, Ward TR, Maréchal JD. Structural, Kinetic, and Docking Studies of Artificial Imine Reductases Based on Biotin–Streptavidin Technology: An Induced Lock-and-Key Hypothesis. J Am Chem Soc 2014; 136:15676-83. [DOI: 10.1021/ja508258t] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Victor Muñoz Robles
- Departament
de Química, Universitat Autònoma de Barcelona, Edifici
C.n., 08193 Cerdanyola
del Vallés, Barcelona, Spain
| | | | - Tillmann Heinisch
- Biozenbtrum, University of Basel, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland
| | - Agustí Lledós
- Departament
de Química, Universitat Autònoma de Barcelona, Edifici
C.n., 08193 Cerdanyola
del Vallés, Barcelona, Spain
| | - Tilman Schirmer
- Biozenbtrum, University of Basel, Klingelbergstrasse 50/70, CH-4056 Basel, Switzerland
| | - Thomas R. Ward
- University of Basel, Spitalstrasse
51, CH-4056 Basel, Switzerland
| | - Jean-Didier Maréchal
- Departament
de Química, Universitat Autònoma de Barcelona, Edifici
C.n., 08193 Cerdanyola
del Vallés, Barcelona, Spain
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35
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Bacchi M, Berggren G, Niklas J, Veinberg E, Mara MW, Shelby ML, Poluektov OG, Chen LX, Tiede DM, Cavazza C, Field MJ, Fontecave M, Artero V. Cobaloxime-Based Artificial Hydrogenases. Inorg Chem 2014; 53:8071-82. [DOI: 10.1021/ic501014c] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Marine Bacchi
- Laboratory of Chemistry and Biology of
Metals, Université Grenoble Alpes, CNRS, CEA, 17 rue des
Martyrs, F-38000 Grenoble, France
| | - Gustav Berggren
- Laboratory of Chemistry and Biology of
Metals, Université Grenoble Alpes, CNRS, CEA, 17 rue des
Martyrs, F-38000 Grenoble, France
| | - Jens Niklas
- Chemical Sciences and Engineering
Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Elias Veinberg
- DYNAMO/DYNAMOP, Institut de Biologie Structurale, UMR
CNRS/Université Grenoble Alpes/CEA 5075, EPN Campus, 6 rue Jules Horowitz F-38000 Grenoble, France
| | - Michael W. Mara
- Department of Chemistry, Northwestern University, 2145 Sheridan
Road, Evanston, Illinois 60208, United States
| | - Megan L. Shelby
- Department of Chemistry, Northwestern University, 2145 Sheridan
Road, Evanston, Illinois 60208, United States
| | - Oleg G. Poluektov
- Chemical Sciences and Engineering
Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Lin X. Chen
- Chemical Sciences and Engineering
Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
- Department of Chemistry, Northwestern University, 2145 Sheridan
Road, Evanston, Illinois 60208, United States
| | - David M. Tiede
- Chemical Sciences and Engineering
Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Christine Cavazza
- Laboratory of Chemistry and Biology of
Metals, Université Grenoble Alpes, CNRS, CEA, 17 rue des
Martyrs, F-38000 Grenoble, France
| | - Martin J. Field
- DYNAMO/DYNAMOP, Institut de Biologie Structurale, UMR
CNRS/Université Grenoble Alpes/CEA 5075, EPN Campus, 6 rue Jules Horowitz F-38000 Grenoble, France
| | - Marc Fontecave
- Laboratory of Chemistry and Biology of
Metals, Université Grenoble Alpes, CNRS, CEA, 17 rue des
Martyrs, F-38000 Grenoble, France
- Laboratoire de Chimie des Processus Biologiques, UMR 8229 (Collège
de France, CNRS, Université Pierre et Marie Curie), 11 place Marcellin Berthelot 75005 Paris, France
| | - Vincent Artero
- Laboratory of Chemistry and Biology of
Metals, Université Grenoble Alpes, CNRS, CEA, 17 rue des
Martyrs, F-38000 Grenoble, France
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36
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Koley Seth B, Ray A, Biswas S, Basu S. NiII–Schiff base complex as an enzyme inhibitor of hen egg white lysozyme: a crystallographic and spectroscopic study. Metallomics 2014; 6:1737-47. [DOI: 10.1039/c4mt00098f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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37
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Metalloenzyme design and engineering through strategic modifications of native protein scaffolds. Curr Opin Chem Biol 2014; 19:67-75. [PMID: 24513641 DOI: 10.1016/j.cbpa.2014.01.006] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2013] [Revised: 01/03/2014] [Accepted: 01/03/2014] [Indexed: 10/25/2022]
Abstract
Metalloenzymes are among the major targets of protein design and engineering efforts aimed at attaining novel and efficient catalysis for biochemical transformation and biomedical applications, due to the diversity of functions imparted by the metallo-cofactors along with the versatility of the protein environment. Naturally evolved protein scaffolds can often serve as robust foundations for sustaining artificial active sites constructed by rational design, directed evolution, or a combination of the two strategies. Accumulated knowledge of structure-function relationship and advancement of tools such as computational algorithms and unnatural amino acids incorporation all contribute to the design of better metalloenzymes with catalytic properties approaching the needs of practical applications.
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38
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Geng J, Zhang K, Peng YX, Wang L, Huang W. A ruthenium(II) complex having a ligand undergoing partial C=N cleavage and unusual double-bond shift and nonchirality. INORG CHEM COMMUN 2014. [DOI: 10.1016/j.inoche.2013.11.046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Matsuurua K. Rational design of self-assembled proteins and peptides for nano- and micro-sized architectures. RSC Adv 2014. [DOI: 10.1039/c3ra45944f] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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40
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Monney A, Nastri F, Albrecht M. Peptide-tethered monodentate and chelating histidylidene metal complexes: synthesis and application in catalytic hydrosilylation. Dalton Trans 2013; 42:5655-60. [PMID: 23440059 DOI: 10.1039/c3dt50424g] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Nδ,Nε-dimethylated histidinium salt (His*) was tethered to oligopeptides and metallated to form Ir(III) and Rh(I) NHC complexes. Peptide-based histidylidene complexes containing only alanine, Ala-Ala-His*-[M] and Ala-Ala-Ala-His*-[M] were synthesised ([M] = Rh(cod)Cl, Ir(Cp*)Cl2), as well as oligopeptide complexes featuring a potentially chelating methionine and tyrosine residue, Met-Ala-Ala-His*-Rh(cod)Cl and Tyr-Ala-Ala-His*-Rh(cod)Cl. Chelation of the methionine-containing histidylidene ligand was induced by halide abstraction from the rhodium centre, while tyrosine remained non-coordinating under identical conditions. High catalytic activities in hydrosilylation were achieved with all peptide-based rhodium complexes. The cationic S(Met),C(His*)-bidentate peptide rhodium catalyst outperformed the monodentate neutral peptide complexes and constitutes one of the most efficient rhodium carbene catalysts for hydrosilylation, providing new opportunities for the use of peptides as N-heterocyclic carbene ligands in catalysis.
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Affiliation(s)
- Angèle Monney
- School of Chemistry and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland
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Ogata K, Sasano D, Yokoi T, Isozaki K, Yoshida R, Takenaka T, Seike H, Ogawa T, Kurata H, Yasuda N, Takaya H, Nakamura M. Synthesis and Self-Assembly of NCN-Pincer Pd-Complex-Bound Norvalines. Chemistry 2013; 19:12356-75. [DOI: 10.1002/chem.201301513] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2013] [Indexed: 11/06/2022]
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Schwizer F, Köhler V, Dürrenberger M, Knörr L, Ward TR. Genetic Optimization of the Catalytic Efficiency of Artificial Imine Reductases Based on Biotin–Streptavidin Technology. ACS Catal 2013. [DOI: 10.1021/cs400428r] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Fabian Schwizer
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Valentin Köhler
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Marc Dürrenberger
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Livia Knörr
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
| | - Thomas R. Ward
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056 Basel, Switzerland
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43
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Artificial Metalloenzymes Constructed From Hierarchically-Assembled Proteins. Chem Asian J 2013; 8:1646-60. [DOI: 10.1002/asia.201300347] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Indexed: 01/20/2023]
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Esmieu C, Cherrier MV, Amara P, Girgenti E, Marchi-Delapierre C, Oddon F, Iannello M, Jorge-Robin A, Cavazza C, Ménage S. An Artificial Oxygenase Built from Scratch: Substrate Binding Site Identified Using a Docking Approach. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201209021] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Esmieu C, Cherrier MV, Amara P, Girgenti E, Marchi-Delapierre C, Oddon F, Iannello M, Jorge-Robin A, Cavazza C, Ménage S. An Artificial Oxygenase Built from Scratch: Substrate Binding Site Identified Using a Docking Approach. Angew Chem Int Ed Engl 2013; 52:3922-5. [DOI: 10.1002/anie.201209021] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2012] [Indexed: 11/11/2022]
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46
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Wei H, Wang E. Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes. Chem Soc Rev 2013; 42:6060-93. [DOI: 10.1039/c3cs35486e] [Citation(s) in RCA: 2267] [Impact Index Per Article: 206.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Sanghamitra NJM, Ueno T. Expanding coordination chemistry from protein to protein assembly. Chem Commun (Camb) 2013; 49:4114-26. [DOI: 10.1039/c2cc36935d] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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48
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McLaughlin MP, Retegan M, Bill E, Payne TM, Shafaat HS, Peña S, Sudhamsu J, Ensign AA, Crane BR, Neese F, Holland PL. Azurin as a protein scaffold for a low-coordinate nonheme iron site with a small-molecule binding pocket. J Am Chem Soc 2012; 134:19746-57. [PMID: 23167247 PMCID: PMC3515693 DOI: 10.1021/ja308346b] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The apoprotein of Pseudomonas aeruginosa azurin binds iron(II) to give a 1:1 complex, which has been characterized by electronic absorption, Mössbauer, and NMR spectroscopies, as well as X-ray crystallography and quantum-chemical computations. Despite potential competition by water and other coordinating residues, iron(II) binds tightly to the low-coordinate site. The iron(II) complex does not react with chemical redox agents to undergo oxidation or reduction. Spectroscopically calibrated quantum-chemical computations show that the complex has high-spin iron(II) in a pseudotetrahedral coordination environment, which features interactions with side chains of two histidines and a cysteine as well as the C═O of Gly45. In the (5)A(1) ground state, the d(z(2)) orbital is doubly occupied. Mutation of Met121 to Ala leaves the metal site in a similar environment but creates a pocket for reversible binding of small anions to the iron(II) center. Specifically, azide forms a high-spin iron(II) complex and cyanide forms a low-spin iron(II) complex.
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Affiliation(s)
| | - Marius Retegan
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany
| | - Eckhard Bill
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany
| | - Thomas M. Payne
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853
| | - Hannah S. Shafaat
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany
| | - Salvador Peña
- Department of Chemistry, University of Rochester, Rochester, New York 14618
| | - Jawahar Sudhamsu
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853
| | - Amy A. Ensign
- Department of Chemistry, University of Rochester, Rochester, New York 14618
| | - Brian R. Crane
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853
| | - Frank Neese
- Max Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany
| | - Patrick L. Holland
- Department of Chemistry, University of Rochester, Rochester, New York 14618
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Köhler V, Wilson YM, Dürrenberger M, Ghislieri D, Churakova E, Quinto T, Knörr L, Häussinger D, Hollmann F, Turner NJ, Ward TR. Synthetic cascades are enabled by combining biocatalysts with artificial metalloenzymes. Nat Chem 2012; 5:93-9. [DOI: 10.1038/nchem.1498] [Citation(s) in RCA: 277] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Accepted: 10/10/2012] [Indexed: 12/22/2022]
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50
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Shaw WJ. The Outer-Coordination Sphere: Incorporating Amino Acids and Peptides as Ligands for Homogeneous Catalysts to Mimic Enzyme Function. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2012. [DOI: 10.1080/01614940.2012.679453] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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