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Liu P, Guo Z, Wang Y, He M, Kang Y, Wu H, Hu Z, Zhang J. Occurrence of polycyclic aromatic hydrocarbons in the Yellow River delta: Sources, ecological risks, and microbial response. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 370:122432. [PMID: 39243646 DOI: 10.1016/j.jenvman.2024.122432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 08/22/2024] [Accepted: 09/04/2024] [Indexed: 09/09/2024]
Abstract
This research investigated the distribution, sources, and ecological risks of polycyclic aromatic hydrocarbons (PAHs) in the Yellow River Delta (YRD), China, emphasizing the response of soil microorganisms. The study involved quantitative analyses of 16 PAHs specified by the U.S. Environmental Protection Agency (USEPA) in both water and soil, utilizing metagenomic technique to determine the response of microbial communities and metabolism within the soil. Results noted that PAHs in the water mainly originate from pyrogenic source and in the soil originate from mixture source, with higher concentrations found in wetland areas compared to river regions. The ecological risk assessment revealed low-to-moderate risk. Microbial analysis demonstrated increased diversity and abundance of bacteria associated with PAHs in areas with higher PAHs pollution. Metagenomic insights revealed significant effects of organic carbon on PAHs degradation genes (ko00624 and ko00626), as well as significant differences in specific metabolic pathways including phenanthrene degradation, with key enzymes showing significant differences between the two environments. The study underscores the importance of understanding PAHs distribution and microbial responses to effectively manage and mitigate pollution in estuarine environments.
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Affiliation(s)
- Peiqiong Liu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Zizhang Guo
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China.
| | - Yu Wang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Mingyu He
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Yan Kang
- College of Safety and Environmental Engineering, Shandong University of Science and Technology, Qingdao, 266590, China
| | - Haiming Wu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Zhen Hu
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China
| | - Jian Zhang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao, 266237, China; College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan, 250014, China.
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Zhang J, Dong L, Huang H, Hua P. Elucidating and forecasting the organochlorine pesticides in suspended particulate matter by a two-stage decomposition based interpretable deep learning approach. WATER RESEARCH 2024; 266:122315. [PMID: 39217646 DOI: 10.1016/j.watres.2024.122315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 07/01/2024] [Accepted: 08/21/2024] [Indexed: 09/04/2024]
Abstract
Accurately predicting the concentration of organochlorine pesticides (OCPs) presents a challenge due to their complex sources and environmental behaviors. In this study, we introduced a novel and advanced model that combined the power of three distinct techniques: Complete Ensemble Empirical Mode Decomposition with Adaptive Noise (CEEMDAN), Variational Mode Decomposition (VMD), and a deep learning network of Long Short-Term Memory (LSTM). The objective is to characterize the variation in OCPs concentrations with high precision. Results show that the hybrid two-stage decomposition coupled models achieved an average symmetric mean absolute percentage error (SMAPE) of 23.24 % in the empirical analysis of typical surface water. It exhibited higher predictive power than the given individual benchmark models, which yielded an average SMAPE of 40.88 %, and single decomposition coupled models with an average SMAPE of 29.80 %. The proposed CEEMDAN-VMD-LSTM model, with an average SMAPE of 13.55 %, consistently outperformed the other models, yielding an average SMAPE of 33.53 %. A comparative analysis with shallow neural network methods demonstrated the advantages of the LSTM algorithm when coupled with secondary decomposition techniques for processing time series datasets. Furthermore, the interpretable analysis derived by the SHAP approach revealed that precipitation followed by the total phosphorus had strong effects on the predicted concentration of OCPs in the given water. The data presented herein shows the effectiveness of decomposition technique-based deep learning algorithms in capturing the dynamic characteristics of pollutants in surface water.
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Affiliation(s)
- Jin Zhang
- The National Key Laboratory of Water Disaster Prevention, Yangtze Institute for Conservation and Development, Hohai University, 210098, Nanjing, China
| | - Liang Dong
- School of Environment and Energy, South China University of Technology, 510006, Guangzhou, China
| | - Hai Huang
- Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, 510006 Guangzhou, China; School of Environment, South China Normal University, University Town, 510006 Guangzhou, China
| | - Pei Hua
- Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Theoretical Chemistry of Environment, South China Normal University, 510006 Guangzhou, China; School of Environment, South China Normal University, University Town, 510006 Guangzhou, China.
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3
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Liu X, Fu Z, Liu TX, Liang P. Effects of repeated afidopyropen treatment on the structure and function of the soil microbial community. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 342:123083. [PMID: 38061430 DOI: 10.1016/j.envpol.2023.123083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 11/29/2023] [Accepted: 11/30/2023] [Indexed: 01/26/2024]
Abstract
Chemical insecticides are the most effective pest control agents. Afidopyropen is a novel insecticide used against sap-sucking insects, such as aphids. However, the effects of repeated afidopyropen application on the structure and function of soil microorganisms remain unknown. In this study, the changes in the enzyme activities, community structure and function, and relative abundance of antibiotic resistance ontology (ARO) of soil microorganisms were investigated during three repeated afidopyropen applications under laboratory conditions at the maximum recommended dosage (M1) and 10 times the M1 (M10). The neutral phosphatase (NPA) and catalase (CAT) activities in the soil were significantly suppressed after afidopyropen treatment. The Simpson diversity index (1/D) and Shannon-Wiener diversity index (H) also decreased in both the M1 and M10 afidopyropen-treated soils, indicating a remarkable decrease in soil microorganism diversity. The average well color development (AWCD) first increased and subsequently recovered to normal levels after the third application of the insecticide, suggesting that afidopyropen application could increase the metabolic activity of soil microorganisms. Metagenomic analysis showed that repeated afidopyropen application in both the M1 and M10 treatment groups altered the community structure of soil microorganisms, albeit in different ways. Furthermore, repeated afidopyropen application significantly increased the relative ARO abundance, especially in the M10 treatment, with the most dominant AROs being adeF, baeS, and IND-6. These findings reveal the effects of excessive afidopyropen application on soil microorganisms and lay an important foundation for the comprehensive evaluation of the impact of this insecticide on the environment.
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Affiliation(s)
- Xiaolan Liu
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China.
| | - Zhixiao Fu
- Department of Entomology, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, Shandong, China.
| | - Tong-Xian Liu
- Institute of Entomology, Guizhou University, Guiyang, Guizhou, China.
| | - Pei Liang
- Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China.
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Qi Y, Wu Y, Zhi Q, Zhang Z, Zhao Y, Fu G. Effects of Polycyclic Aromatic Hydrocarbons on the Composition of the Soil Bacterial Communities in the Tidal Flat Wetlands of the Yellow River Delta of China. Microorganisms 2024; 12:141. [PMID: 38257968 PMCID: PMC10820892 DOI: 10.3390/microorganisms12010141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 12/26/2023] [Accepted: 01/06/2024] [Indexed: 01/24/2024] Open
Abstract
Polycyclic aromatic hydrocarbons (PAHs) are pervasive organic pollutants in coastal ecosystems, especially in tidal flat wetlands. However, the mechanisms through which PAHs impact the soil bacterial communities of wetlands featuring a simple vegetation structure in the Yellow River Delta (China) remain largely unclear. In this study, we examined soil samples from two sites featuring a single vegetation type (Suaeda salsa) in the Yellow River Delta. Specifically, we investigated the impacts of PAHs on the diversity and composition of soil bacteria communities through high-throughput 16 S rRNA sequencing. PAHs significantly increased the soil organic carbon content but decreased the total phosphorus content (p = 0.02). PAH contamination notably reduced soil bacterial community α diversity (Shannon index) and β diversity. Furthermore, PAHs significantly altered the relative abundance of bacterial phyla, classes, and genera (p < 0.05). Specifically, PAHs increased the relative abundance of the bacterial phyla Acidobacteriota and Gemmatimonadota (p < 0.05), while decreasing the relative abundance of Bacteroidota, Desulfobacterota, and Firmicutes compared to the control wetland (p < 0.05). Moreover, PAHs and certain soil properties [total nitrogen (TN), soil organic carbon (SOC), total phosphorus (TP), and total salt (TS)] were identified as key parameters affecting the community of soil bacteria, with the abundance of specific bacteria being both negatively and positively affected by PAHs, SOC, and TN. In summary, our findings could facilitate the identification of existing environmental problems and offer insights for improving the protection and management of tidal flat wetland ecosystems in the Yellow River Delta of China.
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Affiliation(s)
- Yue Qi
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China (Q.Z.)
| | - Yuxuan Wu
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China (Q.Z.)
| | - Qiuying Zhi
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China (Q.Z.)
| | - Zhe Zhang
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China (Q.Z.)
| | - Yilei Zhao
- Chinese Research Academy of Environmental Sciences, Beijing 100012, China (Q.Z.)
| | - Gang Fu
- Institute of Geographical Sciences, Heibei Academy of Sciences, Shijiazhuang 050011, China;
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Liu Y, Wang F, Wang Z, Xiang L, Fu Y, Zhao Z, Kengara FO, Mei Z, He C, Bian Y, Naidu R, Jiang X. Soil properties and organochlorine compounds co-shape the microbial community structure: A case study of an obsolete site. ENVIRONMENTAL RESEARCH 2024; 240:117589. [PMID: 37926227 DOI: 10.1016/j.envres.2023.117589] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/28/2023] [Accepted: 11/02/2023] [Indexed: 11/07/2023]
Abstract
Organochlorine compounds (OCs) such as chlorobenzenes (CB) are persistent organic pollutants that are ubiquitous in soils at organochlorine pesticides (OCP) production sites. Long-term contamination with OCs might alter the soil microbial structure and further affect soil functions. However, the effects of OCs regarding the shaping of microbial community structures in the soils of OCs-contaminated sites remain obscure, especially in the vertical soil profile where pollutants are highly concealed. Hence this paper explored the status and causes of OCs pollution (CB, hexachlorocyclohexane (HCH), and dichlorodiphenyltrichloroethane (DDT)) in an obsolete site, and its combined effects with soil properties (pH, available phosphorus (AP), dissolved organic carbon (DOC), etc) on microbial community structure. The mean total concentration of OCs in the subsoils was up to 996 times higher than that in the topsoils, with CB constituting over 90% of OCs in the subsoil. Historical causes, anthropogenic effects, soil texture, and the nature of OCs contributed to the differences in the spatial distribution of OCs. Redundancy analysis revealed that both the soil properties and OCs were important factors in shaping microbial composition and diversity. Variation partitioning analysis further indicated that soil properties had a greater impact on microbial community structure than OCs. Significant differences in microbial composition between topsoils and subsoils were observed through linear discriminant analysis effect size (LEfSe) analysis, primarily driven by different pollutant conditions. Additionally, co-occurrence network analysis indicated that heavily contaminated subsoils exhibited closer and more intricate bacterial community interactions compared to lightly contaminated topsoils. This work reveals the impact of environmental factors in co-shaping the structure of soil microbial communities. These findings advance our understanding of the intricate interplay among organochlorine pollutants, soil properties, and microbial communities, and provides valuable insights into devising effective management strategies in OCs-contaminated soils.
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Affiliation(s)
- Yu Liu
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fang Wang
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Ziquan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Leilei Xiang
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuhao Fu
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiliang Zhao
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | | | - Zhi Mei
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chao He
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Yongrong Bian
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ravi Naidu
- Global Centre for Environmental Remediation (GCER), University of Newcastle, Callaghan, NSW 2308, Australia; Crc for Contamination Assessment and Remediation of the Environment (crcCARE), University of Newcastle, Callaghan, NSW 2308, Australia
| | - Xin Jiang
- Chinese Academy of Science State Key Laboratory of Soil & Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
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Tsiantas P, Karasali H, Pavlidis G, Kavasilis S, Doula M. The status of organochlorine pesticide contamination in Greek agricultural soils: the ghost of traditional agricultural history. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:117654-117675. [PMID: 37872334 DOI: 10.1007/s11356-023-30447-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 10/09/2023] [Indexed: 10/25/2023]
Abstract
Inadequate information regarding pesticide contamination in Greek agricultural soils is currently available, while national soil monitoring programs have not been initiated yet. The aim of the present study was to assess the levels, compositions, and distribution of thirty three organochlorine pesticides (OCPs) in Greek agricultural soils, due to the environmental threat posed by these compounds, even after decades from their abrogation from the market. Determination of the organochlorine pesticides was achieved using gas-chromatography-mass spectrometry, following a QuEChERS sample preparation method. A total of 60 soil samples, from two soil horizons (up to 60 cm), were obtained from agricultural lands in Greece throughout 2019-2020. The major findings presented DDTs, γ-HCH, alachlor, and 4,4- DCBP in the examined soil samples, with DDTs being the major compounds with their maximum cumulative concentration (ΣDDTs) reaching 1273.4 μg kg-1 d.w. Compositional profile and diagnostic ratios suggested that the occurrence of DDT residues was due to historical inputs. Most of the samples did not exceed the target values set by the Netherlands and Canadian guidelines for DDTs in soil; however, there was one exception in the case of Aegina Island. Finally, based on the environmental exposure assessment conducted, the vast majority of the analytes presented lower concentrations compared to the predicted environmental concentrations, with an exemption for DDE metabolite where the measured and predicted concentrations were almost equal.
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Affiliation(s)
- Petros Tsiantas
- Benaki Phytopathological Institute, Scientific Directorate of Pesticides' Control & Phytopharmacy, Laboratory of Chemical Control of Pesticides, Kifissia, 14561, Athens, Greece
| | - Helen Karasali
- Benaki Phytopathological Institute, Scientific Directorate of Pesticides' Control & Phytopharmacy, Laboratory of Chemical Control of Pesticides, Kifissia, 14561, Athens, Greece.
| | - George Pavlidis
- Centre for the Assessment of Natural Hazards and Proactive Planning & Laboratory of Reclamation Works and Water Resources Management, School of Rural and Surveying Engineering, National Technical University of Athens, 9 Heroon Polytechniou St., 15780, Zographou, Athens, Greece
| | - Stamatis Kavasilis
- Benaki Phytopathological Institute, Scientific Directorate of Phytopathology, Laboratory of Non-Parasitic Diseases, Soil Resources and Geoinformatics, Kifissia, 14561, Athens, Greece
| | - Maria Doula
- Benaki Phytopathological Institute, Scientific Directorate of Phytopathology, Laboratory of Non-Parasitic Diseases, Soil Resources and Geoinformatics, Kifissia, 14561, Athens, Greece
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Han L, Xu H, Wang Q, Liu X, Li X, Wang Y, Nie J, Liu M, Ju C, Yang C. Deciphering the degradation characteristics of the fungicides imazalil and penflufen and their effects on soil bacterial community composition, assembly, and functional profiles. JOURNAL OF HAZARDOUS MATERIALS 2023; 460:132379. [PMID: 37643571 DOI: 10.1016/j.jhazmat.2023.132379] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/14/2023] [Accepted: 08/22/2023] [Indexed: 08/31/2023]
Abstract
The adsorption-desorption and degradation characteristics of two widely applied fungicides, imazalil and penflufen, and the responses of soil bacterial diversity, structure, function, and interaction after long-term exposure were systemically studied in eight different soils. The adsorption ability of imazalil in soil was significantly higher than that of penflufen. Both imazalil and penflufen degraded slowly in most soils following the order: imazalil > penflufen, with soil pH, silt, and clay content being the potential major influencing factors. Both imazalil and penflufen obviously inhibited the soil microbial functional diversity, altered the soil bacterial community and decreased its diversity. Although exposure to low and high concentrations of imazalil and penflufen strengthened the interactions among the soil bacterial communities, the functional diversity of the co-occurrence network tended to be simple at high concentrations, especially in penflufen treatment. Both imazalil and penflufen markedly disturbed soil nitrogen cycling, especially penflufen seriously inhibited most nitrogen cycling processes, such as nitrogen fixation and nitrification. Meanwhile, sixteen and ten potential degradative bacteria of imazalil and penflufen, respectively, were found in soils, including Kaistobacter and Lysobacter. Collectively, the long-term application of imazalil and penflufen could cause residual accumulation in soils and subsequently result in serious negative effects on soil ecology.
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Affiliation(s)
- Lingxi Han
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China.
| | - Han Xu
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China
| | - Qianwen Wang
- Central Laboratory, Qingdao Agricultural University, Qingdao 266109, China
| | - Xiaoli Liu
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China
| | - Xiaoming Li
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China
| | - Yiran Wang
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China
| | - Jiyun Nie
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China.
| | - Mingyu Liu
- College of Horticulture, Qingdao Agricultural University, Laboratory of Quality & Safety Risk Assessment for Fruit (Qingdao), Ministry of Agriculture and Rural Affairs/National Technology Centre for Whole Process Quality Control of FSEN Horticultural Products (Qingdao), Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao 266109, China
| | - Chao Ju
- College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China
| | - Congjun Yang
- College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China
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Zhu G, Chao H, Sun M, Jiang Y, Ye M. Toxicity sharing model of earthworm intestinal microbiome reveals shared functional genes are more powerful than species in resisting pesticide stress. JOURNAL OF HAZARDOUS MATERIALS 2023; 446:130646. [PMID: 36587599 DOI: 10.1016/j.jhazmat.2022.130646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 12/06/2022] [Accepted: 12/19/2022] [Indexed: 06/17/2023]
Abstract
Earthworm intestinal bacteria and indigenous soil bacteria work closely during various biochemical processes and play a crucial role in maintaining the internal stability of the soil environment. However, the response mechanism of these bacterial communities to external pesticide disturbance is unknown. In this study, soil and earthworm gut contents were metagenomically sequenced after exposure to various concentrations of nitrochlorobenzene (0-1026.7 mg kg-1). A high degree of similarity was found between the microbial community composition and abundance in the worm gut and soil, both of which decreased significantly (P < 0.05) under elevated pesticide stress. The toxicity sharing model (TSM) showed that the toxicity sharing capacity was 97.4-125.7 % and 100.4-130.2 % for Egenes (genes in the worm gut) and Emet(degradation genes in the worm gut) in the earthworm intestinal microbiome, respectively. This indicated that the earthworm intestinal microbiome assisted in relieving the pesticide toxicity of the indigenous soil microbiome. This study showed that the TSM could quantitatively describe the toxic effect of pesticides on the earthworm intestinal microbiome. It provides a new analytical model for investigating the ecological alliance between earthworm intestinal microbiome and indigenous soil microbiome under pesticide stress while contributing a more profound understanding of the potential to use earthworms to mitigate pesticide pollution in soils and develop earthworm-based soil remediation techniques.
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Affiliation(s)
- Guofan Zhu
- National Engineering Laboratort of Soil Nutrients Management, Pollution Control and Remediation Technoligies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Huizhen Chao
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Mingming Sun
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yuji Jiang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 210008 Nanjing, China
| | - Mao Ye
- National Engineering Laboratort of Soil Nutrients Management, Pollution Control and Remediation Technoligies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China.
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Yang X, Huang X, Cheng J, Cheng Z, Yang Q, Hu L, Xu J, He Y. Diversity-triggered bottom-up trophic interactions impair key soil functions under lindane pollution stress. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 314:120293. [PMID: 36183873 DOI: 10.1016/j.envpol.2022.120293] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Revised: 08/29/2022] [Accepted: 09/24/2022] [Indexed: 06/16/2023]
Abstract
A growing amount of evidence suggests that microbial diversity loss may have negative effects on soil ecosystem function. However, less attention has been paid to the determinants of the relationship between community diversity and soil functioning under pollution stress. Here we manipulated microbial diversity to observe how biotic and abiotic factors influenced soil multi-functions (e.g. lindane degradation, soil respiration and nutrient cycling). Results showed that protist community was more sensitive to dilution, pollution stress, and sodium acetate addition than bacterial and fungal community. Acetate addition accelerated the lindane removal. Any declines in microbial diversity reduced the specialized soil processes (NO3-N production, and N2O flux), but increased soil respiration rate. Dilution led to a significant increase in consumers-bacterial and fungi-bacterial interaction as evidenced by co-occurrence network, which possibly played roles in maintaining microbiome stability and resilience. Interestingly, pollution stress and resource availability weaken the relationship between microbial diversity and soil functions through the bottom-up trophic interaction and environmental preference of soil microbiome. Overall, this work provides experimental evidence that loss in microbial diversity, accompanied with changes in trophic interactions mediated biotic and abiotic factors, could have important consequences for specialized soil functioning in farmland ecosystems.
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Affiliation(s)
- Xueling Yang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Xiaowei Huang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Jie Cheng
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Zhongyi Cheng
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Qi Yang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Lingfei Hu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China.
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Yan He
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
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10
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Possible Processes and Mechanisms of Hexachlorobenzene Decomposition by the Selected Comamonas testosteroni Bacterial Strains. Processes (Basel) 2022. [DOI: 10.3390/pr10112170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
Background: The bacterial destructing activity toward pesticides has been the focus of research in the last few decades. Hexachlorobenzene is included in the organochlorine pesticides group that are prohibited for use. However, large hexachlorobenzene amounts are still concentrated in the soil, stressing the relevance of research on hexachlorobenzene-destroying bacteria. Methods: The ability to destroy hexachlorobenzene by Comamonas testosteroni UCM B-400, B-401, B-213 strains was investigated and established. Bacteria were cultivated (7 days at 28 °C) in mineral Luria-Bertrani (LB) medium with three hexachlorobenzene doses: 10, 20, 50 mg/L. The hexachlorobenzene concentrations were recorded by a gas chromatography method. Results: The results showed that C. testosteroni UCM B-400, B-401 have high destructive activity toward hexachlorobenzene. The highest (50 mg/L) initial concentration decreased to 41.5 and 43.8%, respectively, for C. testosteroni UCM B-400, B-401. The unadapted C. testosteroni UCM B-213 was tolerant to hexachlorobenzene (cell titers after cultivating with 10.0, 20.0, 50.0 mg/mL were higher compared to initial titer), but had a low-destructing activity level (two times less than B-400 and B-401). Conclusions: Bacterial strains C. testosteroni UCM B-400, B-401 can be seen as a potential soil bioremediation from hexachlorobenzene pollution.
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11
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Qin Z, Zhao Z, Xia L, Wang S. Pollution pressure and soil depth drive prokaryotic microbial assemblage and co-occurrence patterns in an organic polluted site. JOURNAL OF HAZARDOUS MATERIALS 2022; 438:129570. [PMID: 35999754 DOI: 10.1016/j.jhazmat.2022.129570] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 07/07/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
Abstract
Organic polluted sites have become a global concern of soil contamination, yet little is known about microbial vertical distribution and community assembly in organic polluted sites. Here, high-throughput sequencing technology was employed to investigate prokaryotic microbial diversity and community assembly along soil profile in an abandoned chemical organic contaminated site. Results showed that there was no significant difference (P > 0.05) observed in microbial alpha diversity among different soil layers, whereas the structure of microbial communities presented significantly different (P < 0.05) in the superficial layer (0-0.5 m) compared with intermediate (1-1.5 m) and bottom (2.5-3 m) layers. Soil prokaryotic microbial community evolved to possess the potential of degrading organic pollutants under long-term organic pollution stress. A relatively homogeneous environment created by the organic polluted site mainly induced the ecological process of homogeneous selection driving community assembly, while dispersal limitation gained importance with the increase of soil depth. Organic contaminants were identified as the key driver of destabilizing co-occurrence networks, while the frequent cooperative behaviors among species could combat organic pollution stress and sustain prokaryotic community stability. Collectively, pollution pressure and soil depth jointly affected prokaryotic microbial assemblage and co-occurrence that underpinned the spatial scaling patterns of organic contaminated sites microbiota.
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Affiliation(s)
- Zhirui Qin
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Zhenhua Zhao
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lake of Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA.
| | - Liling Xia
- Nanjing Vocational University of Industry Technology, Nanjing 210016, China
| | - Shiyu Wang
- Beijing Municipal Ecological and Environmental Monitoring Center, Beijing 100048, China
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12
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Zheng X, Jahn MT, Sun M, Friman VP, Balcazar JL, Wang J, Shi Y, Gong X, Hu F, Zhu YG. Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes. THE ISME JOURNAL 2022; 16:1397-1408. [PMID: 35039616 PMCID: PMC9038774 DOI: 10.1038/s41396-022-01188-w] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Revised: 12/29/2021] [Accepted: 01/06/2022] [Indexed: 12/13/2022]
Abstract
Viruses significantly influence local and global biogeochemical cycles and help bacteria to survive in different environments by encoding various auxiliary metabolic genes (AMGs) associated with energy acquisition, stress tolerance and degradation of xenobiotics. Here we studied whether bacterial (dsDNA) virus encoded AMGs are enriched in organochlorine pesticide (OCP) contaminated soil in China and if viral AMGs include genes linked to OCP biodegradation. Using metagenomics, we found that OCP-contaminated soils displayed a lower bacterial, but higher diversity of viruses that harbored a higher relative abundance of AMGs linked to pesticide degradation and metabolism. Furthermore, the diversity and relative abundance of AMGs significantly increased along with the severity of pesticide contamination, and several biodegradation genes were identified bioinformatically in viral metagenomes. Functional assays were conducted to experimentally demonstrate that virus-encoded L-2-haloacid dehalogenase gene (L-DEX) is responsible for the degradation of L-2-haloacid pesticide precursors, improving bacterial growth at sub-inhibitory pesticide concentrations. Taken together, these results demonstrate that virus-encoded AMGs are linked to bacterial metabolism and biodegradation, being more abundant and diverse in soils contaminated with pesticides. Moreover, our findings highlight the importance of virus-encoded accessory genes for bacterial ecology in stressful environments, providing a novel avenue for using viruses in the bioremediation of contaminated soils.
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Affiliation(s)
- Xiaoxuan Zheng
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Martin T Jahn
- Departments of Biochemistry, Zoology and Chemistry, University of Oxford, Oxford, OX1 3SZ, United Kingdom
| | - Mingming Sun
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
- Key Laboratory of Plant Immunity, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization & Jiangsu Key Laboratory for Solid Organic Waste Utilization, Nanjing, 210095, China.
| | - Ville-Petri Friman
- University of York, Department of Biology, Wentworth Way, York, Y010 5DD, United Kingdom.
| | - Jose Luis Balcazar
- Catalan Institute for Water Research (ICRA), Girona, 17003, Spain
- University of Girona, Girona, 17004, Spain
| | - Jinfeng Wang
- Computational Genomics Lab, Beijing Institutes of Life Science, Chinese Academy of Sciences, 100101, Beijing, China
| | - Yu Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008, China
| | - Xin Gong
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Feng Hu
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yong-Guan Zhu
- Research Center for Eco-environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Haidian, 100085, Beijing, China
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13
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Wang J, Tang K, Hu X, Wang H, Gudda FO, Odinga ES, El-Ramady H, Ling W. Impact of hexachlorocyclohexane addition on the composition and potential functions of the bacterial community in red and purple paddy soil. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 297:118795. [PMID: 34998896 DOI: 10.1016/j.envpol.2022.118795] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 12/20/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
Soil studies have reported the effect of Hexachlorocyclohexane (HCH) on soil microbial communities. However, how soil microbial communities and function shift after HCH addition into the red and purple soil remains unclear. Here, we analyzed the HCH residue fate, and the functional composition and structure of microbial communities to HCH in the two soils. Under the 100 g/ha and 1000 g/ha treatment, the dissipation rate of HCH was 0.0386 and 0.0273 in the purple soil, 0.0145 and 0.0195 in the red soil. The enrichment of HCH degrading genes leads to a higher HCH dissipation rate in the purple soil. PCoA results demonstrated that HCH addition has a different effect on the community diversity in the two soils, and Proteobacteria and Acidobacteria were the major phyla in the two soils. The soil microbiome average variation degree values of red soil were higher than purple soil, which indicated that the soil microbiome in the purple soil was more stable than in the red soil under HCH addition. PICRUSt2 results indicated that functional genes involved in the carbon, nitrogen biogeochemical cycles and HCH degradation were more tolerant to HCH addition in the purple soil. This study provides new insights into understanding of the effect of HCH addition on soil microbial communities and function in the red and purple paddy soil.
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Affiliation(s)
- Jian Wang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Kaidi Tang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Xiaojie Hu
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Hefei Wang
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Fredrick Owino Gudda
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Emmanuel Stephen Odinga
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Hassan El-Ramady
- Soil and Water Department, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Sheikh, 33516, Egypt
| | - Wanting Ling
- Institute of Organic Contaminant Control and Soil Remediation, College of Resource and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, PR China.
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14
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Gupta A, Singh UB, Sahu PK, Paul S, Kumar A, Malviya D, Singh S, Kuppusamy P, Singh P, Paul D, Rai JP, Singh HV, Manna MC, Crusberg TC, Kumar A, Saxena AK. Linking Soil Microbial Diversity to Modern Agriculture Practices: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19053141. [PMID: 35270832 DOI: 10.3390/ijerph190531] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 03/04/2022] [Accepted: 03/04/2022] [Indexed: 05/28/2023]
Abstract
Agriculture is a multifarious interface between plants and associated microorganisms. In contemporary agriculture, emphasis is being given to environmentally friendly approaches, particularly in developing countries, to enhance sustainability of the system with the least negative effects on produce quality and quantity. Modern agricultural practices such as extensive tillage, the use of harmful agrochemicals, mono-cropping, etc. have been found to influence soil microbial community structure and soil sustainability. On the other hand, the question of feeding the ever-growing global population while ensuring system sustainability largely remains unanswered. Agriculturally important microorganisms are envisaged to play important roles in various measures to raise a healthy and remunerative crop, including integrated nutrient management, as well as disease and pest management to cut down agrochemicals without compromising the agricultural production. These beneficial microorganisms seem to have every potential to provide an alternative opportunity to overcome the ill effects of various components of traditional agriculture being practiced by and large. Despite an increased awareness of the importance of organically produced food, farmers in developing countries still tend to apply inorganic chemical fertilizers and toxic chemical pesticides beyond the recommended doses. Nutrient uptake enhancement, biocontrol of pests and diseases using microbial inoculants may replace/reduce agrochemicals in agricultural production system. The present review aims to examine and discuss the shift in microbial population structure due to current agricultural practices and focuses on the development of a sustainable agricultural system employing the tremendous untapped potential of the microbial world.
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Affiliation(s)
- Amrita Gupta
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Udai B Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Pramod K Sahu
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Surinder Paul
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Adarsh Kumar
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Deepti Malviya
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Shailendra Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Pandiyan Kuppusamy
- ICAR-Central Institute for Research on Cotton Technology, Ginning Training Centre, Nagpur 440023, India
| | - Prakash Singh
- Department of Plant Breeding and Genetics, Veer Kunwar Singh College of Agriculture, Bihar Agricultural University, Dumraon 802136, India
| | - Diby Paul
- Pilgram Marpeck School of Science, Technology, Engineering and Mathematics, Truett McConnel University, 100 Alumni Dr., Cleveland, GA 30528, USA
| | - Jai P Rai
- Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi 221005, India
| | - Harsh V Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
| | - Madhab C Manna
- Soil Biology Division, ICAR-Indian Institute of Soil Science, Nabibagh, Berasia Road, Bhopal 462038, India
| | - Theodore C Crusberg
- Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA 01605, USA
| | - Arun Kumar
- Department of Agronomy, Bihar Agricultural University, Sabour, Bhagalpur 813210, India
| | - Anil K Saxena
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India
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15
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Gupta A, Singh UB, Sahu PK, Paul S, Kumar A, Malviya D, Singh S, Kuppusamy P, Singh P, Paul D, Rai JP, Singh HV, Manna MC, Crusberg TC, Kumar A, Saxena AK. Linking Soil Microbial Diversity to Modern Agriculture Practices: A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:3141. [PMID: 35270832 PMCID: PMC8910389 DOI: 10.3390/ijerph19053141] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 03/04/2022] [Accepted: 03/04/2022] [Indexed: 12/01/2022]
Abstract
Agriculture is a multifarious interface between plants and associated microorganisms. In contemporary agriculture, emphasis is being given to environmentally friendly approaches, particularly in developing countries, to enhance sustainability of the system with the least negative effects on produce quality and quantity. Modern agricultural practices such as extensive tillage, the use of harmful agrochemicals, mono-cropping, etc. have been found to influence soil microbial community structure and soil sustainability. On the other hand, the question of feeding the ever-growing global population while ensuring system sustainability largely remains unanswered. Agriculturally important microorganisms are envisaged to play important roles in various measures to raise a healthy and remunerative crop, including integrated nutrient management, as well as disease and pest management to cut down agrochemicals without compromising the agricultural production. These beneficial microorganisms seem to have every potential to provide an alternative opportunity to overcome the ill effects of various components of traditional agriculture being practiced by and large. Despite an increased awareness of the importance of organically produced food, farmers in developing countries still tend to apply inorganic chemical fertilizers and toxic chemical pesticides beyond the recommended doses. Nutrient uptake enhancement, biocontrol of pests and diseases using microbial inoculants may replace/reduce agrochemicals in agricultural production system. The present review aims to examine and discuss the shift in microbial population structure due to current agricultural practices and focuses on the development of a sustainable agricultural system employing the tremendous untapped potential of the microbial world.
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Affiliation(s)
- Amrita Gupta
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Udai B. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Pramod K. Sahu
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Surinder Paul
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Adarsh Kumar
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Deepti Malviya
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Shailendra Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Pandiyan Kuppusamy
- ICAR-Central Institute for Research on Cotton Technology, Ginning Training Centre, Nagpur 440023, India;
| | - Prakash Singh
- Department of Plant Breeding and Genetics, Veer Kunwar Singh College of Agriculture, Bihar Agricultural University, Dumraon 802136, India;
| | - Diby Paul
- Pilgram Marpeck School of Science, Technology, Engineering and Mathematics, Truett McConnel University, 100 Alumni Dr., Cleveland, GA 30528, USA;
| | - Jai P. Rai
- Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi 221005, India
| | - Harsh V. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
| | - Madhab C. Manna
- Soil Biology Division, ICAR-Indian Institute of Soil Science, Nabibagh, Berasia Road, Bhopal 462038, India;
| | - Theodore C. Crusberg
- Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA 01605, USA;
| | - Arun Kumar
- Department of Agronomy, Bihar Agricultural University, Sabour, Bhagalpur 813210, India;
| | - Anil K. Saxena
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-National Bureau of Agriculturally Important Microorganisms, Maunath Bhanjan 275103, India; (A.G.); (U.B.S.); (P.K.S.); (S.P.); (A.K.); (D.M.); (S.S.); (H.V.S.); (A.K.S.)
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Wang Y, Liu T, Tang J, Xiong Z, Song L, Ma T. Vertical distribution and effect of historical residual organochlorine pesticides on microbial community structure in sediment cores from an abandoned oxidation pond after dredging for 15 years. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:8306-8322. [PMID: 34482457 DOI: 10.1007/s11356-021-16192-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
The vertical distribution pattern of 19 organochlorine pesticides (OCPs), together with microbial ester-linked fatty acid methyl ester (EL-FAME) profiles were investigated in sediments from an abandoned oxidation pond of Ya-Er lake, China, which had been heavily polluted by hexachlorocyclohexanes (HCHs) and chlorobenzenes in 1980s. Subsurface sediment samples were taken from five sediment cores along the transect running from the lakeshore (0.5~2.7 m in depth) to lakebed (0.1~0.4 m). The total OCP concentration ranged from 29.8 to 941.8 ng g-1 dw. Hexachlorobenzene (HCB), HCHs, and dichlorodiphenyl-trichloroethanes (DDTs) were the three dominant OCP classes, accounting for 26.5-97.4%, 1.8-33.2%, and 0.4-15.5% of the total OCP concentration, respectively. Hot spots of HCB, HCHs, and DDTs were detected at 0.9~2.7 m deep layers of the lakeshore, where was once the main dredged sediment backfill site for in-situ remediation of the oxidation pond in 2002-2004. HCHs and HCB still showed high potential ecological risks. The sources of OCPs were identified and quantified using principal component analysis with absolute principal component scores-multiple linear regression model. The first three major sources were persistent residues, recent agricultural input, and historical industrial input, contributing on average 28.2%, 17.9%, and 17.1% of total OCPs, respectively. Redundancy analysis of microbial EL-FAME profiles and nine dominant OCPs revealed that the spatial variation in microbial community structure was significantly corresponded with the OCP composition. This is the first study highlighting the concern on historical industrial inputs of OCPs in subsurface sediments of the lakeshore disposal zone. The findings could help to distinguish the artificial backfill sediments from undisturbed polluted sediments for optimization of further dredging plans.
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Affiliation(s)
- Yafen Wang
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China.
- Hubei Provincial Engineering Research Center of Systematic Water Pollution Control, China University of Geosciences, Wuhan, 430074, People's Republic of China.
| | - Tao Liu
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China
| | - Jincan Tang
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China
| | - Zhiwei Xiong
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China
| | - Liangchu Song
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China
| | - Teng Ma
- School of Environmental Studies, China University of Geosciences, No. 388 Lumo Road, Hongshan District, Wuhan, 430074, People's Republic of China
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Zhao H, Li Q, Jin X, Li D, Zhu Z, Li QX. Chiral enantiomers of the plant growth regulator paclobutrazol selectively affect community structure and diversity of soil microorganisms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 797:148942. [PMID: 34311352 DOI: 10.1016/j.scitotenv.2021.148942] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 06/29/2021] [Accepted: 07/05/2021] [Indexed: 06/13/2023]
Abstract
Paclobutrazol is a triazole plant growth regulator with a wide range of applications in crop and fruit tree production. Paclobutrazol is used as a racemic mixture in agriculture. However, the effects of paclobutrazol enantiomers on soil microbial community structure and diversity are unclear. In the present study, Illumina high-throughput sequencing was used to study the enantioselective effects of two paclobutrazol enantiomers on soil microbial community. S-paclobutrazol was more persistent than R-paclobutrazol. The half-lives of the S- and R-isomers were 80 d and 50 d, respectively. No interconversion between the two isomers occurred in soils. In addition, the enantiomers had significant enantiomeric effects on soil microbial community and the paclobutrazol degradation was probably attributed to the presence of Pseudomonas and Mycobacterium. Notably, the relative abundance of Fusarium, a genus of filamentous fungi producing gibberellins, could be enantioselectively affected by the chiral enantiomers. Paclobutrazol enantiomers exhibited greater effects on the fungal community structure than bacterial community structure due to the fungicidal activity of paclobutrazol. Finally, R-paclobutrazol had a significant effect on the microbial networks. The findings of the present study suggest that the use of S-paclobutrazol may accomplish both plant growth regulation and the minimization of effects of paclobutrazol on soil microbial communities.
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Affiliation(s)
- Hongwei Zhao
- Center for Eco-Environment Restoration of Hainan Province & Key Laboratory of A&F Environmental Processes and Ecological Regulation of Hainan Province, College of Environment and Ecology, Hainan University, Renmin Ave. 58, Haikou 570228, China; State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China
| | - Qiuli Li
- Center for Eco-Environment Restoration of Hainan Province & Key Laboratory of A&F Environmental Processes and Ecological Regulation of Hainan Province, College of Environment and Ecology, Hainan University, Renmin Ave. 58, Haikou 570228, China; College of Tropical Crops, Hainan University, Haikou 570228, China
| | - Xiaotuo Jin
- Center for Eco-Environment Restoration of Hainan Province & Key Laboratory of A&F Environmental Processes and Ecological Regulation of Hainan Province, College of Environment and Ecology, Hainan University, Renmin Ave. 58, Haikou 570228, China
| | - Dong Li
- College of Tropical Crops, Hainan University, Haikou 570228, China
| | - Zhiqiang Zhu
- College of Tropical Crops, Hainan University, Haikou 570228, China.
| | - Qing X Li
- Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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Han L, Kong X, Xu M, Nie J. Repeated exposure to fungicide tebuconazole alters the degradation characteristics, soil microbial community and functional profiles. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117660. [PMID: 34426382 DOI: 10.1016/j.envpol.2021.117660] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 06/22/2021] [Accepted: 06/23/2021] [Indexed: 06/13/2023]
Abstract
Tebuconazole is a broad-spectrum triazole fungicide that has been extensively applied in agriculture, but its toxicity on soil ecology remains unknown after repeated introduction to soil. This study investigated the degradation of tebuconazole and the changes in soil microbial community composition and functional diversity as well as network complexity in soil repeatedly treated with tebuconazole. Tebuconazole degraded slowly as the degradation half-life initially increased and then decreased during the four repeated treatments. High concentration of tebuconazole treatment significantly delayed the degradation of tebuconazole. The soil microbial functional diversity in tebuconazole-treated soils showed an inhibition-recovery-stimulation trend with increasing treatment frequency, which was related to the increased degradation rates of tebuconazole. Tebuconazole significantly decreased soil microbial biomass and bacterial community diversity, and this decreasing trend became more pronounced with increasing treatment frequency and concentration. Moreover, tebuconazole significantly decreased soil bacterial community network complexity, particularly at high concentration of tebuconazole treatment. Notably, four bacterial genera, Methylobacterium, Burkholderia, Hyphomicrobium, and Dermacoccus, were identified as the potential tebuconazole-degrading bacteria, with the relative abundances in the tebuconazole treatment significantly increasing by 42.1-34687.1% compared to the control. High concentration of tebuconazole treatment delayed increases in the relative abundances of Methylobacterium but promoted those of Burkholderia, Hyphomicrobium and Dermacoccus. Additionally, repeated tebuconazole treatments improved only four metabolic pathways, cell motility, membrane transport, environmental information processing, and xenobiotics biodegradation and metabolism, which were associated with the degradation of tebuconazole. The above results indicated that repeated tebuconazole treatments resulted in the significant accumulation of residues and long-term negative effects on soil ecology, and also emphasized the potential roles of dominant indigenous microbial bacteria in the degradation of tebuconazole.
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Affiliation(s)
- Lingxi Han
- College of Horticulture, Qingdao Agriculture University, Qingdao, 266109, China
| | - Xiabing Kong
- College of Horticulture, Qingdao Agriculture University, Qingdao, 266109, China
| | - Min Xu
- College of Horticulture, Qingdao Agriculture University, Qingdao, 266109, China
| | - Jiyun Nie
- College of Horticulture, Qingdao Agriculture University, Qingdao, 266109, China; Qingdao Key Lab of Modern Agriculture Quality and Safety Engineering, Qingdao, 266109, China.
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Zhang Z, Wan J, Liu L, Ye M, Jiang X. Metagenomics reveals functional profiling of microbial communities in OCP contaminated sites with rapeseed oil and tartaric acid biostimulation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 289:112515. [PMID: 33819653 DOI: 10.1016/j.jenvman.2021.112515] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Revised: 03/09/2021] [Accepted: 03/27/2021] [Indexed: 06/12/2023]
Abstract
Organochlorine pesticides (OCPs) contaminated sites pose great threats to both human health and environmental safety. Targeted bioremediation in these regions largely depends on microbial diversity and activity. This study applied metagenomics to characterize the microbial communities and functional groups composition features during independent or simultaneous rapeseed oil and tartaric acid applications, as well as the degradation kinetics of OCPs. Results showed that: the degradation rates of α-chlordane, β-chlordane and mirex were better when (0.50% w/w) rapeseed oil and (0.05 mol L-1) tartaric acid were applied simultaneously than singular use, yielding removal rates of 56.4%, 53.9%, and 49.4%, respectively. Meanwhile, bio-stimulation facilitated microbial enzyme (catalase/superoxide dismutase/peroxidase) activity in soils significantly, promoting the growth of dominant bacterial communities. Classification at phylum level showed that the relative abundance of Proteobacteria was significantly increased (p < 0.05). Network analysis showed that bio-stimulation substantially increased the dominant bacterial community's proportion, especially Proteobacteria. The functional gene results illustrated that bio-stimulation facilitated total relative abundance of degradation genes, phosphorus, carbon, nitrogen, sulfur metabolic genes, and iron transporting genes (p < 0.05). In metabolic pathways, functional genes related to methanogenesis and ammonia generation were markedly upregulated, indicating that bio-stimulation promoted the transformation of metabolic genes, such as carbon and nitrogen. This research is conducive to exploring the microbiological response mechanisms of bio-stimulation in indigenous flora, which may provide technical support for assessing the microbial ecological remediation outcomes of bio-stimulation in OCP contaminated sites.
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Affiliation(s)
- Zhongyun Zhang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jinzhong Wan
- Nanjing Institute of Environmental Sciences, Ministry of Environmental Protection of China, Nanjing, 210008, China
| | - Li Liu
- Nanjing Institute of Environmental Sciences, Ministry of Environmental Protection of China, Nanjing, 210008, China; School of Earth Science and Engineering, Hohai University, Nanjing, 210008, China
| | - Mao Ye
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Xin Jiang
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
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Zhang H, Zhang Z, Song J, Mei J, Fang H, Gui W. Reduced bacterial network complexity in agricultural soils after application of the neonicotinoid insecticide thiamethoxam. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 274:116540. [PMID: 33540259 DOI: 10.1016/j.envpol.2021.116540] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 01/04/2021] [Accepted: 01/16/2021] [Indexed: 06/12/2023]
Abstract
Pesticides may alter soil microbial community structure or diversity, but their impact on microbial co-occurrence patterns remains unclear. Here, the effect of the widely used neonicotinoid insecticide thiamethoxam on the bacterial community in five arable soils was deciphered using the 16S rRNA gene amplicon sequencing technique. The degradation half-life of thiamethoxam in nonsterilized soils was significantly lower than that in sterilized soils, suggesting a considerable contribution from biodegradation. Soil bacterial community diversity diminished in high concentration thiamethoxam treatment and its impact varied with treatment concentration and soil type. Bacterial co-occurrence network complexity significantly decreased after exposure to thiamethoxam. Under thiamethoxam stress, the relative changes in bacterial co-occurrence networks were closely related (the majority of p-values < 0.05) to the soil physicochemical properties, yet the diversity and dominant phyla were slightly related (the majority of p-values > 0.05). Additionally, three bacterial genera, Sphingomonas, Streptomyces, and Catenulispora, were identified to be relevant to the degradation of thiamethoxam in soils. This finding deciphers the succession of the bacterial community under thiamethoxam stress across multiple soils, and emphasizes the potential role of physicochemical properties in regulating the ecotoxicological effect of pesticides on the soil microbiome.
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Affiliation(s)
- Houpu Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Zihan Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Jiajin Song
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Jiajia Mei
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Hua Fang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China; Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Zhejiang University, Hangzhou, 310058, China; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Zhejiang University, Hangzhou, 310058, China.
| | - Wenjun Gui
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou, 310058, China.
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Zhang H, Song J, Zhang Z, Zhang Q, Chen S, Mei J, Yu Y, Fang H. Exposure to fungicide difenoconazole reduces the soil bacterial community diversity and the co-occurrence network complexity. JOURNAL OF HAZARDOUS MATERIALS 2021; 405:124208. [PMID: 33158656 DOI: 10.1016/j.jhazmat.2020.124208] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 10/02/2020] [Accepted: 10/05/2020] [Indexed: 06/11/2023]
Abstract
Difenoconazole is a triazole fungicide that is widely used worldwide and has been frequently detected in agricultural soils, but its ecotoxicological effect on soil bacterial community remains unknown. Here, the degradation of difenoconazole and its effect on soil bacterial communities were investigated at three concentrations in five different agricultural soils. Difenoconazole degraded faster in non-sterilized soils than in sterilized soils, suggesting that biodegradation is a major contributor to the dissipation of difenoconazole in soils. Exposure to high concentrations of difenoconazole decreased the soil bacterial community diversity in most soils, and this influence was aggravated with the increasing concentration. The effect of difenoconazole on soil bacterial community diversity was also enhanced with the increasing content of organic matter and total nitrogen in soils. Moreover, difenoconazole exposure also reduced the soil bacterial community network complexity and exhibited a concentration-dependent characteristic. In addition, a core bacterial community (57 operational taxonomic units, OTUs) was identified, and some core OTUs were strongly linked to the degradation of difenoconazole in soils. It is concluded that high concentrations of difenoconazole may have a significant effect on the soil bacterial communities, and co-occurrence networks may improve the ecotoxicological risk assessment of fungicides on soil microbiome.
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Affiliation(s)
- Houpu Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Jiajin Song
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Zihan Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Qianke Zhang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Shiyu Chen
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Jiajia Mei
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Yunlong Yu
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Zhejiang University, Hangzhou 310058, China
| | - Hua Fang
- Institute of Pesticide and Environmental Toxicology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Biology of Crop Pathogens and Insects of Zhejiang Province, Zhejiang University, Hangzhou 310058, China.
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22
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Mishra S, Lin Z, Pang S, Zhang W, Bhatt P, Chen S. Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities. Front Bioeng Biotechnol 2021; 9:632059. [PMID: 33644024 PMCID: PMC7902726 DOI: 10.3389/fbioe.2021.632059] [Citation(s) in RCA: 91] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 01/11/2021] [Indexed: 12/16/2022] Open
Abstract
Global environmental contamination with a complex mixture of xenobiotics has become a major environmental issue worldwide. Many xenobiotic compounds severely impact the environment due to their high toxicity, prolonged persistence, and limited biodegradability. Microbial-assisted degradation of xenobiotic compounds is considered to be the most effective and beneficial approach. Microorganisms have remarkable catabolic potential, with genes, enzymes, and degradation pathways implicated in the process of biodegradation. A number of microbes, including Alcaligenes, Cellulosimicrobium, Microbacterium, Micrococcus, Methanospirillum, Aeromonas, Sphingobium, Flavobacterium, Rhodococcus, Aspergillus, Penecillium, Trichoderma, Streptomyces, Rhodotorula, Candida, and Aureobasidium, have been isolated and characterized, and have shown exceptional biodegradation potential for a variety of xenobiotic contaminants from soil/water environments. Microorganisms potentially utilize xenobiotic contaminants as carbon or nitrogen sources to sustain their growth and metabolic activities. Diverse microbial populations survive in harsh contaminated environments, exhibiting a significant biodegradation potential to degrade and transform pollutants. However, the study of such microbial populations requires a more advanced and multifaceted approach. Currently, multiple advanced approaches, including metagenomics, proteomics, transcriptomics, and metabolomics, are successfully employed for the characterization of pollutant-degrading microorganisms, their metabolic machinery, novel proteins, and catabolic genes involved in the degradation process. These technologies are highly sophisticated, and efficient for obtaining information about the genetic diversity and community structures of microorganisms. Advanced molecular technologies used for the characterization of complex microbial communities give an in-depth understanding of their structural and functional aspects, and help to resolve issues related to the biodegradation potential of microorganisms. This review article discusses the biodegradation potential of microorganisms and provides insights into recent advances and omics approaches employed for the specific characterization of xenobiotic-degrading microorganisms from contaminated environments.
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Affiliation(s)
- Sandhya Mishra
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Ziqiu Lin
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shimei Pang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Wenping Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shaohua Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
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23
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Nehra M, Dilbaghi N, Marrazza G, Kaushik A, Sonne C, Kim KH, Kumar S. Emerging nanobiotechnology in agriculture for the management of pesticide residues. JOURNAL OF HAZARDOUS MATERIALS 2021; 401:123369. [PMID: 32763682 DOI: 10.1016/j.jhazmat.2020.123369] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 06/12/2020] [Accepted: 06/30/2020] [Indexed: 05/18/2023]
Abstract
Utilization of pesticides is often necessary for meeting commercial requirements for crop quality and yield. However, incessant global pesticide use poses potential risks to human and ecosystem health. This situation increases the urgency of developing nano-biotechnology-assisted pesticide formulations that have high efficacy and low risk of side effects. The risks associated with both conventional and nanopesticides are summarized in this review. Moreover, the management of residual pesticides is still a global challenge. The contamination of soil and water resources with pesticides has adverse impact over agricultural productivity and food security; ultimately posing threats to living organisms. Pesticide residues in the eco-system may be treated via several biological and physicochemical processes, such as microbe-based degradation and advanced oxidation processes. With these issues in mind, we present a review that explores both existing and emerging techniques for management of pesticide residues and environmental risks. These techniques can offer a sustainable solution to revitalize the tarnished water/soil resources. Further, state-of-the-art research approaches to investigate biotechnological alternatives to conventional pesticides are discussed along with future prospects and mitigation techniques are recommended.
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Affiliation(s)
- Monika Nehra
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India
| | - Neeraj Dilbaghi
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India
| | - Giovanna Marrazza
- Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Florence, Italy
| | - Ajeet Kaushik
- NanoBioTech Laboratory, Department of Natural Sciences, Division of Sciences, Arts & Mathematics, Florida Polytechnic University, Lakeland, FL, 33805-8531, United States
| | - Christian Sonne
- Aarhus University, Department of Bioscience, Arctic Research Centre (ARC), Frederiksborgvej 399, PO Box 358, DK-4000, Roskilde, Denmark
| | - Ki-Hyun Kim
- Department of Civil & Environmental Engineering, Hanyang University, 222 Wangsimni-Ro, Seoul, 04763, Republic of Korea
| | - Sandeep Kumar
- Department of Bio and Nano Technology, Guru Jambheshwar University of Science and Technology, Hisar, Haryana, 125001, India.
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24
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Wang C, Wei Z, Liu R, Bai L, Jiang H, Yuan N. The sequential dewatering and drying treatment enhanced the potential favorable effect of microbial communities in drinking water treatment residue for environmental recycling. CHEMOSPHERE 2021; 262:127930. [PMID: 33182151 DOI: 10.1016/j.chemosphere.2020.127930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 08/04/2020] [Accepted: 08/05/2020] [Indexed: 06/11/2023]
Abstract
The beneficial recycling of drinking water treatment residue (DWTR) for environmental remediation has received increasingly interests; whereas, the reported potential effect of microbial communities in different DWTR was ambiguous, which was unfavorable for the beneficial recycling. This study hypothesized that the varied treatment to DWTR in different waterworks induced the ambiguous effect; accordingly, responses of microbial communities in DWTR to the sequential dewatering and drying treatment were determined based on samples from three waterworks, in combination with 180-d incubation tests. The results showed that the microbial communities varied remarkably in different DWTR before being dewatered (DWTS). However, after dewatering, the increased microbial diversities were observed, and the microbial communities exhibited higher similarities among the dewatered DWTR from different waterworks; furthermore, the dewatered DWTR with subsequent drying treatment enriched more bacteria genus with potential environmental functions after incubation tests. The variations of microbial communities were closely related to DWTR properties, such as pH, organic matter, metals, P, and water extractable nutrients. Further analysis indicated that with maintaining high adsorption capability of DWTR, the dewatering treatment tended to retain specific microbial communities that may be induced by the applied similar techniques in different waterworks; the accumulated nutriments due to drying treatment and the stable DWTR pH enhanced the potential functional bacteria enrichment. Overall, the dewatering and drying treatment led to microbial communities with generality in different DWTR and increased the potential favorable microbial effect, promoting DWTR recycling in environmental remediation.
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Affiliation(s)
- Changhui Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China.
| | - Zhao Wei
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China; Graduate University of Chinese Academy of Sciences, China
| | - Rui Liu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Leilei Bai
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Helong Jiang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Nannan Yuan
- CQC New Energy Technology School, Nanjing Vocational College of Information Technology, Nanjing, China.
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25
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Zhao C, Ni H, Zhao L, Zhou L, Borrás-Hidalgo O, Cui R. High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere. PLoS One 2020; 15:e0241371. [PMID: 33216744 PMCID: PMC7678981 DOI: 10.1371/journal.pone.0241371] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 10/13/2020] [Indexed: 01/06/2023] Open
Abstract
Welsh onion (Allium fistulosum L.) constitutes an important plant species cultivated in China due the benefits and applications in different areas. Moreover, nitrogen is an essential nutrient during the growth and development of plant. Here, we present the effects of nitrogen on soil microbiome in welsh onion plants. We used High-throughput sequencing analysis to determine the diversity and abundances of microbes associated to soil rhizosphere in welsh onion under the influence of nitrogen application. Nitrogen application significantly influenced in the diversity of fungal community. The relative abundance of Orbiliomycetes increased with the nitrogen concentration. Nitrogen application did not affect the diversity of bacterial community, whereas the relative abundance of Acidobacteria_Gp2, Verrucomicrobiae and Sphingobacteriia decreased with the nitrogen condition. In this work, we introduced evidences of the effect of nitrogen fertilization on microbial community in welsh onion rhizosphere, and the change of microbial community may interfere the growth and development of welsh onion.
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Affiliation(s)
- Chen Zhao
- Shandong Provincial Key Laboratory of Food and Fermentation Engineering, Shandong Food Ferment Industry Research & Design Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China
| | - Haifeng Ni
- State Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China
| | - Lin Zhao
- State Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China
| | - Lin Zhou
- State Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China
| | - Orlando Borrás-Hidalgo
- State Key Laboratory of Biobased Material and Green Papermaking, Shandong Provincial Key Lab. of Microbial Engineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, China
| | - Rongzong Cui
- Institute of Agricultural Resources and Environment, Shandong Academy of Agricultural Sciences, Jinan, China
- * E-mail:
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26
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Liu J, Song Y, Tang M, Lu Q, Zhong G. Enhanced dissipation of xenobiotic agrochemicals harnessing soil microbiome in the tillage-reduced rice-dominated agroecosystem. JOURNAL OF HAZARDOUS MATERIALS 2020; 398:122954. [PMID: 32506048 DOI: 10.1016/j.jhazmat.2020.122954] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 03/14/2020] [Accepted: 04/07/2020] [Indexed: 06/11/2023]
Abstract
The ubiquitous contamination generating from the frequent input of agrochemicals is a major hurdle affecting the ecological sustainability of agroecosystems. Here, we investigated the dissipation of multiple pesticides in the subtropical rice-dominated landscapes under tillage intensity management, and unveiled the vital role of soil microbiome in promoting xenobiotic degradation. Three commonly used pesticides (including herbicide butachlor, insecticide clothianidin and fungicide tricyclazole) showed rapid dissipation dynamics in the field where the reduction of tillage intensity with straw incorporation was conducted. In response to pesticide exposure, soil microbial communities adapted quickly with slight changes in community composition and diversity. Meanwhile, the microbial xenobiotic degradation-related functions were stimulated, which possibly related to the increased organic carbon and nitrogen in soil. Importantly, these shifts and effects on microbial communities and functions gradually declined after a length of rice growing seasons, suggesting the flexibility of soil microbiome in tackling with long-term xenobiotic disturbance to maintain a diverse and vibrant soil biota. Overall, our study that displayed the enhanced agrochemical dissipation which benefited markedly from the interaction of tillage management and soil microbial functioning, provides important basis and insights for facilitating green, balanced and sustainable agriculture.
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Affiliation(s)
- Jie Liu
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, PR China
| | - Yuanfeng Song
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, PR China
| | - Mingxin Tang
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, PR China
| | - Qiqi Lu
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, PR China
| | - Guohua Zhong
- Key Laboratory of Integrated Pest Management of Crop in South China, Ministry of Agriculture, Key Laboratory of Natural Pesticide and Chemical Biology, Ministry of Education, South China Agricultural University, Guangzhou 510642, PR China; Guangdong Laboratory for Lingnan Modern Agricultural Science and Technology, Guangzhou, 510642, PR China.
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27
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Sun Y, Chang X, Zhao L, Zhou B, Weng L, Li Y. Comparative study on the pollution status of organochlorine pesticides (OCPs) and bacterial community diversity and structure between plastic shed and open-field soils from northern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 741:139620. [PMID: 32563128 DOI: 10.1016/j.scitotenv.2020.139620] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/20/2020] [Accepted: 05/20/2020] [Indexed: 05/16/2023]
Abstract
The pollution status of organochlorine pesticides (OCPs) and microbial community in plastic shed and open-field soils may be different due to the significant variations in environmental factors between the two cultivation modes. However, the differences remain unclear. We conducted a regional-scale survey to investigate the pollution level, distribution, and sources of 20 OCPs, and to evaluate the soil physicochemical properties and bacterial community in soils from plastic shed and open-field locating the north areas of China. We found that levels of total OCPs in the plastic shed soils were significantly higher than those in the nearby open-field soils. Most of these OCPs were attributed to historical application, except for dichlorodiphenyltrichloroethanes (DDTs) due to the fresh input along with dicofol application. Soil pH (for both cultivation modes) and total organic carbon (TOC) content (only for plastic sheds) were significantly correlated with the total OCP concentrations. Additionally, microbial diversity and richness were generally lower in plastic shed soils than in nearby open-field soils for each region. The bacterial community variation among different regions might be principally determined by the soil type. Soil pH had the greatest impact on the microbial community across all plastic shed and open-field samples. These results provide a better understanding of the environmental impact and ecological risk of OCPs in soils with different cultivation modes.
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Affiliation(s)
- Yang Sun
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin 300191, China
| | - Xingping Chang
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin 300191, China
| | - Lixia Zhao
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin 300191, China
| | - Bin Zhou
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin 300191, China
| | - Liping Weng
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs/Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, MARA/Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Tianjin 300191, China
| | - Yongtao Li
- College of Resources and Environment, South China Agricultural University, Guangzhou 510642, China.
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Han L, Liu Y, Fang K, Zhang X, Liu T, Wang F, Wang X. Dissipation of chlorothalonil in the presence of chlortetracycline and ciprofloxacin and their combined effects on soil enzyme activity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:13662-13669. [PMID: 32030591 DOI: 10.1007/s11356-020-07753-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Accepted: 01/14/2020] [Indexed: 06/10/2023]
Abstract
The long-term application of substantial amounts of fungicides and antibiotic-polluted organic manure (OM) in greenhouse has caused the co-existence of fungicides and antibiotics in soils. However, little is known about the effects of antibiotics on the persistence of fungicides in soils or their combined effects on soil enzyme activity. In this study, fungicide chlorothalonil (CTL) alone and in combination with antibiotic chlortetracycline (CTC) or ciprofloxacin (CIP) were repeatedly added to OM-amended soil to investigate the changes in the residual characteristics of CTL and in soil dehydrogenase and urease activity. The results showed that CTL rapidly dissipated in soils with the corresponding half-lives of 0.9-3.2, which initially increased, then decreased and finally stabilized with an increased treatment frequency. The dissipation of CTL was inhibited by CTC and CIP during the first several treatments. The soil dehydrogenase and urease activity in CTL-treated soils was inhibited during the first six treatments and then recovered afterwards. Compared with the OM-amended soil+CTL treatment, the OM-amended soil+CTL+CTC and OM-amended soil+CTL+CIP treatments had stronger inhibitory effects on soil enzyme activity during the first six repeated treatments but exhibited slight stimulating effects afterwards. Therefore, the results obtained in this study suggested that the long-term co-existence of CTL, CTC, and CIP altered the dissipation characteristics of CTL in soil and affected the soil enzyme activity levels. The prudent application of large and frequent of fungicides and OM-containing antibiotic residues in greenhouses should therefore be carefully considered in order to reduce the long-term combined pollution in soils.
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Affiliation(s)
- Lingxi Han
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China
| | - Yalei Liu
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China
| | - Kuan Fang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China
| | - Xiaolian Zhang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China
| | - Tong Liu
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China
| | - Fenglong Wang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China.
| | - Xiuguo Wang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences (CAAS), Qingdao, 266101, People's Republic of China.
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29
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Zhang W, Lin Z, Pang S, Bhatt P, Chen S. Insights Into the Biodegradation of Lindane (γ-Hexachlorocyclohexane) Using a Microbial System. Front Microbiol 2020; 11:522. [PMID: 32292398 PMCID: PMC7119470 DOI: 10.3389/fmicb.2020.00522] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2020] [Accepted: 03/10/2020] [Indexed: 12/19/2022] Open
Abstract
Lindane (γ-hexachlorocyclohexane) is an organochlorine pesticide that has been widely used in agriculture over the last seven decades. The increasing residues of lindane in soil and water environments are toxic to humans and other organisms. Large-scale applications and residual toxicity in the environment require urgent lindane removal. Microbes, particularly Gram-negative bacteria, can transform lindane into non-toxic and environmentally safe metabolites. Aerobic and anaerobic microorganisms follow different metabolic pathways to degrade lindane. A variety of enzymes participate in lindane degradation pathways, including dehydrochlorinase (LinA), dehalogenase (LinB), dehydrogenase (LinC), and reductive dechlorinase (LinD). However, a limited number of reviews have been published regarding the biodegradation and bioremediation of lindane. This review summarizes the current knowledge regarding lindane-degrading microbes along with biodegradation mechanisms, metabolic pathways, and the microbial remediation of lindane-contaminated environments. The prospects of novel bioremediation technologies to provide insight between laboratory cultures and large-scale applications are also discussed. This review provides a theoretical foundation and practical basis to use lindane-degrading microorganisms for bioremediation.
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Affiliation(s)
- Wenping Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Ziqiu Lin
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shimei Pang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shaohua Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
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30
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Wang CN, Wu RL, Li YY, Qin YF, Li YL, Meng FQ, Wang LG, Xu FL. Effects of pesticide residues on bacterial community diversity and structure in typical greenhouse soils with increasing cultivation years in Northern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 710:136321. [PMID: 31923679 DOI: 10.1016/j.scitotenv.2019.136321] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 12/18/2019] [Accepted: 12/22/2019] [Indexed: 06/10/2023]
Abstract
The understanding of soil microbiome is important for sustainable cultivation, especially under greenhouse conditions. Here, we investigated the changes in soil pesticide residues and microbial diversity and community structure at different cultivation years under a greenhouse system. The 9-to-14 years sites were found to have the least diversity/rich microbial population as compared to sites under 8 years and over 16 years, as analyzed with alpha diversity index. In total, 42 bacterial phyla were identified across soils with different pesticide residues and cultivation ages. Proteobacteria, Acidobacteria, and Bacteroidetes represented the dominant phyla, that accounted for 34.2-43.4%, 9.7-19.3% and 9.2-16.5% of the total population, respectively. Our data prove that certain pesticides contribute to variation in soil microbial community and that soil bacteria respond differently to cultivation years under greenhouse conditions. Thus, this study provides an insight into microbial community structure changes by pesticides under greenhouse systems and natural biodegradation may have an important part in pesticides soil decontamination.
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Affiliation(s)
- Chao-Nan Wang
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Rui-Lin Wu
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Yu-Yan Li
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Yi-Fan Qin
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Yi-Long Li
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Fan-Qiao Meng
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Li-Gang Wang
- Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Key Laboratory of Agricultural Non-point Source Pollution Control, Ministry of Agriculture, Beijing 100081, China
| | - Fu-Liu Xu
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
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31
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Tripathi V, Edrisi SA, Chaurasia R, Pandey KK, Dinesh D, Srivastava R, Srivastava P, Abhilash PC. Restoring HCHs polluted land as one of the priority activities during the UN-International Decade on Ecosystem Restoration (2021-2030): A call for global action. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 689:1304-1315. [PMID: 31466167 DOI: 10.1016/j.scitotenv.2019.06.444] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2019] [Revised: 06/24/2019] [Accepted: 06/26/2019] [Indexed: 06/10/2023]
Abstract
The United Nations General Assembly has recently declared 2021-2030 as the 'International Decade on Ecosystem Restoration' for facilitating the restoration of degraded and destroyed terrestrial and marine systems for regaining biodiversity and ecosystem services, creating job opportunities and also to fight against climate change. One of the prime focus is the restoration of ~350 mha of degraded land across the world for attaining the UN-Sustainable Development Goals. Pesticides are one of the major causes of land pollution and hexachlorocyclohexanes (HCHs, including technical-HCH and γ-HCH) is one of the widely used organochlorine pesticides during the past seven decades before α-, β-, and γ-HCH was listed in the Stockholm Convention in 2009. The widespread pollution of HCHs has been reported from every sphere of the environment and ~7 Mt of HCHs residues have been dumped worldwide near the production sites. HCHs isomers have higher volatility, water solubility and long-range atmospheric transport ability which further facilitates its entry into various environmental compartments. Therefore, the restoration and management of HCHs polluted land is urgently required. Despite various pilot-scale studies have been reported for the remediation of HCHs polluted land, they are not successfully established under the field conditions. This is mainly due to the high concentration of HCHs residues in the contaminated soil and also due to its toxicity and highly persistent nature, which increases the complexity of the onsite remediation. Here we provide a novel approach i.e. sequential and integrated remediation approach (SIRA) for the restoration of HCHs contaminated land by the integrated use of agroresidues along with the application of HCHs degrading microorganisms and chemical amendments followed by the plant-based clean-up techniques using grasses, herbs, shrubs and trees in a sequential manner. SIRA provides cost effective solution with enhanced ecological and socioeconomic benefits for the sustainable restoration of HCHs contaminated sites.
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Affiliation(s)
- Vishal Tripathi
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Sheikh Adil Edrisi
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Rajan Chaurasia
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Krishna Kumar Pandey
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Divya Dinesh
- Department of Chemistry, T.K. Madhava Memorial College, Nangiyarkulangara 690513, Kerala, India
| | - Rajani Srivastava
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Pankaj Srivastava
- ICAR-Indian Institute of Soil & Water Conservation, Dehradun 248195, Uttarakhand, India
| | - P C Abhilash
- Institute of Environment & Sustainable Development, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India.
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32
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Tan B, Yang F, Lan L, You C, Zhang J, Xu Z, Liu Y, Zhang L, Li H. Naphthalene exerts substantial nontarget effects on soil nitrogen mineralization processes in a subalpine forest soil: A microcosm study. PLoS One 2019; 14:e0217178. [PMID: 31107923 PMCID: PMC6527233 DOI: 10.1371/journal.pone.0217178] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2019] [Accepted: 05/06/2019] [Indexed: 11/18/2022] Open
Abstract
Naphthalene has been widely used to test the functional roles of soil fauna, but its nontarget effects remain uncertain in various soils. To determine whether there is a potential nontarget effect on soil biochemical properties in subalpine forest soil, soils in a subalpine forest on the western Qinghai-Tibet Plateau were treated by naphthalene in microcosms. The responses of soil microbial activity and nutrients to naphthalene were studied following 52 days of incubation. The results showed that the naphthalene application obviously decreased the microbial respiration rate in the first 10 days of the incubation and then increased the rate in the following days of the incubation. Moreover, the naphthalene application did not significantly affect the microbial activities overall, measured as soil microbial phospholipid fatty acid (PLFA) abundances and biomasses, or most enzyme activities (invertase, nitrate reductase and nitrite reductase) during the whole incubation period. However, naphthalene suppressed increases in the DON, NH4+-N and NO3--N contents and urease activity and led to the net mineralization of inorganic N (NH4+-N + NO3--N), in contrast to the net immobilization result in the controls. These results suggest that naphthalene can exert direct nontarget effects on soil microbial respiration and N mineralization processes in subalpine soils. Caution should be taken when using naphthalene to repel soil animals in field experiments.
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Affiliation(s)
- Bo Tan
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
- * E-mail:
| | - Fan Yang
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Liying Lan
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Chengming You
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Jian Zhang
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Zhenfeng Xu
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Yang Liu
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Li Zhang
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
| | - Han Li
- Institute of Ecology & Forestry, Sichuan Agricultural University, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Alpine Forest Ecosystem Research Station, Soil and Water Conservation and Desertification Control Key Laboratory of Sichuan Province, Chengdu, China
- Collaborative Innovation Center of Ecological Security in the Upper Reaches of Yangtze River, Chengdu, China
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Rhizospheric Microbacterium sp. P27 Showing Potential of Lindane Degradation and Plant Growth Promoting Traits. Curr Microbiol 2019; 76:888-895. [PMID: 31093691 DOI: 10.1007/s00284-019-01703-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2019] [Accepted: 05/08/2019] [Indexed: 10/26/2022]
Abstract
Lindane is an organochlorine pesticide that is highly persistent in the environment. The amassing of lindane has been identified worldwide and has been found to be very toxic to the environment, human, and animal health. Therefore, urgent consideration and management of the problem is necessary. The current study intends to isolate and identify lindane degrading rhizospheric bacteria from Phragmites karka and to study its degradation kinetics. Also, plant growth promoting potential of the bacterium was evaluated in the presence and absence of studied pesticide. Rhizospheric bacteria were isolated by standard enrichment technique in Mineral Salt Medium. Microbacterium sp. P27 showed the highest degradation percentage, 82.7 ± 1.79% for 50 mg l-1 lindane, after 15 days. Degradation was also studied at different concentrations of lindane. Maximum degradation was achieved at 10 mg l-1 followed by 50 mg l-1 and 100 mg l-1 lindane. Microbacterium sp. P27 showed positive result for Indole-3-acetic acid production, ammonia production, and 1-aminocyclopropane-1-carboxylate deaminase activity. Presence of lindane revealed a concentration-dependent decrease in plant growth promoting activity. Since the isolated bacterial strain possesses lindane degrading capacity and also other characters that help in plant growth promotion, the isolate can be an important candidate for the progress of bioremediation strategy.
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