Assessing Arundo donax L. in vitro-tolerance for phytoremediation purposes

Differences in the Microbial Composition and Function of the Arundo donax Rhizosphere Under Different Cultivation Conditions

Rhizosphere microorganisms play an important role in the health and development of root systems. Investigating the microbial composition of the rhizosphere is central to understanding the inter-root microbial function of Arundo donax under various cultivation conditions. To complement the metagenomic study of the Arundo donax rhizosphere, here, an amplicon-based metagenomic survey of bacteria and fungi was selected as a practical approach to analyzing the abundance, diversity index, and community structure of rhizosphere bacteria and fungi, as well as to study the effects of different cultivation methods on rhizosphere microbial diversity. Next-generation sequencing and QIIME2 analysis were used. The results indicated that microbial community richness, diversity, and evenness of the hydroponic samples were lower than those of soil samples when examining the α diversity indices of bacteria and fungi using Chao1, ACE, and Shannon metrics. In particular, the relative abundances of Proteobacteria, Rhizobiales, and Incertae sedis in hydroponic materials were higher, while Basidiomycota, Ascomycota, and Actinobacteriota dominated the flora in soil materials when comparing the numbers of OTUs and the ACE community richness estimator. Furthermore, the rhizosphere of hydroponic A. donax contained a higher abundance of nitrogen-fixing bacteria and photosynthetic bacteria, which contribute to root formation. Additionally, there was a significant presence of Basidiomycota, Ascomycota, and Actinobacteriota in soil A. donax, which can form hyphae. This reveals that the microbial community composition of the A. donax rhizosphere is significantly different under various cultivation conditions, suggesting that employing two distinct culturing techniques for Arundo donax may alter the microbiome. Furthermore, it provides technical support for the synergistic interaction between Arundo donax and rhizosphere microorganisms so as to better use the relationship between Arundo donax and basic microorganisms to solve the problems of Arundo donax growth and ecological restoration.

In Vitro Propagation of Alyssum Species with Different Metal Accumulation Strategies

The Alyssum genus, with its many metal-adapted species, is a good candidate for research on phytoremediation and metal tolerance mechanisms. These goals can be supported by elaborating on an in vitro multiplication protocol. Our study aimed to determine the aseptic conditions for the growth and effective propagation of Alyssum murale, A. alyssoides, and A. montanum, each exhibiting different adaptation strategies to nickel ions. Firstly, hydrogen peroxide (H2O2) or sodium nitroprusside (SNP) were investigated in the biological Lepidium test to find their optimal concentrations that could improve the germination attributes of tested Alyssum species. The concentration of 0.5 mM H2O2 or SNP was selected for research on Alyssum seeds, which were the initial material to start in vitro cultivation. Regardless of the species, H2O2 harmed germination percentage; however, its application accelerated radicle emergence, especially in metal-sensitive genotypes, while in both metal-tolerant ones, the germination time of H2O2-treated seeds was similar to that of treated with SNP. These findings provide a novel insight into the effect of H2O2 or SNP on seeds, contributing to a better understanding of their role in the germination of different genotypes. Among tested media compositions, the synchronous plant regeneration of all species was achieved on MS medium supplemented with 0.5 mg/L 2iP and 0.1 mg/L IAA, making an essential advancement in the in vitro protocols for metallophytes.

Exploring the Evolutionary History and Phylogenetic Relationships of Giant Reed (Arundo donax) through Comprehensive Analysis of Its Chloroplast Genome

Giant reed (Arundo donax) is widely distributed across the globe and is considered an important energy crop. This study presents the first comprehensive analysis of the chloroplast genome of giant reed, revealing detailed characteristics of this species' chloroplast genome. The chloroplast genome has a total length of 137,153 bp, containing 84 protein-coding genes, 38 tRNA genes, and 8 rRNA genes, with a GC content of 39%. Functional analysis indicates that a total of 45 photosynthesis-related genes and 78 self-replication-related genes were identified, which may be closely associated with its adaptability and growth characteristics. Phylogenetic analysis confirmed that Arundo donax cv. Lvzhou No.1 belongs to the Arundionideae clade and occupies a distinct evolutionary position compared to other Arundo species. The findings of this study not only enhance our understanding of the giant reed genome but also provide valuable genetic resources for its application in biotechnology, bioenergy crop development, and ecological restoration.

Insights on phytoremediation of chromium from tannery wastewater contaminated soil

The study was conducted to evaluate the phytoremediation response of Arundo donax and vetiver grasses irrigated by different levels (0%, 10%, 25%, 50%, 75%, and 100%) of treated tannery wastewater. After 60 days, matured plants were harvested, sorted into root, leaf, stem and shoot, dried and digested using standard procedures and analyzed for Cr(VI) and total Cr using atomic absorption and UV-Visible spectrophotometer, respectively. Corresponding results revealed height growth of Arundo donax and vetiver grasses was greatly affected by the irrigation level of tannery wastewater. Roots of vetiver grasses accumulate the highest amount of Cr(VI) (2.76 mg/kg) compared to the shoots Cr(VI) 1.72 mg/kg. Lowering concentration of tannery wastewater used for irrigation to 10% boosted the accumulation capacity (3.99 mg/kg) of the root of Arundo donax grasses for Cr(VI). The translocation values (TF > 1) demonstrated favourability of Arundo donax grasses for phytoextraction of Cr(VI) to plant tissues above ground level. However, the bioaccumulation values (BAF > 1) of the root of vetiver grasses proved suitability for the phytostabilisation of Cr(VI). Arundo donax and vetiver grasses have demonstrated a substantial reduction in Cr contamination of soils from tanneries, and therefore, phytoremediation is potentially feasible for the decontamination of Cr-polluted environments.

Unveiling the Dual Nature of Heavy Metals: Stressors and Promoters of Phenolic Compound Biosynthesis in Basilicum polystachyon (L.) Moench In Vitro

The global industrial revolution has led to a substantial rise in heavy metal levels in the environment, posing a serious threat to nature. Plants synthesize phenolic compounds under stressful conditions, which serve as protective agents against oxidative stress. Basilicum polystachyon (L.) Moench is an herbaceous plant of the Lamiaceae family. Some species within this family are recognized for their capacity to remediate sites contaminated with heavy metals. In this study, the effects of mercury (II) chloride and lead (II) nitrate on the in vitro propagation of B. polystachyon were investigated. Shoot tips from in vitro plantlets were cultured in Murashige and Skoog's (MS) media with heavy metals ranging from 1 to 200 µM to induce abiotic stress and enhance the accumulation of phenolic compounds. After three weeks, MS medium with 1 µM of lead (II) supported the highest shoot multiplication, and the maximum number of roots per explant was found in 100 µM of lead (II), whereas a higher concentration of heavy metals inhibited shoot multiplication and root development. The plantlets were hardened in a greenhouse with a 96% field survival rate. Flame atomic absorption spectroscopy (FAAS) was used to detect heavy metal contents in plant biomass. At both 200 µM and 50 µM concentrations, the greatest accumulation of mercury (II) was observed in the roots (16.94 ± 0.44 µg/g) and shoots (17.71 ± 0.66 µg/g), respectively. Similarly, lead (II) showed the highest accumulation in roots (17.10 ± 0.54 µg/g) and shoots (7.78 ± 0.26 µg/g) at 200 µM and 50 µM exposures, respectively. Reverse-phase high-performance liquid chromatography (RP-HPLC) identified and quantified various phenolic compounds in B. polystachyon leaves, including gallic acid, caffeic acid, vanillic acid, p-coumaric acid, ellagic acid, rosmarinic acid, and trans-cinnamic acid. These compounds were found in different forms, such as free, esterified, and glycosylated. Mercury (II)-exposed plants exhibited elevated levels of vanillic acid (1959.1 ± 3.66 µg/g DW), ellagic acid (213.55 ± 2.11 µg/g DW), and rosmarinic acid (187.72 ± 1.22 µg/g DW). Conversely, lead (II)-exposed plants accumulated higher levels of caffeic acid (42.53±0.61 µg/g DW) and p-coumaric acid (8.04 ± 0.31 µg/g DW). Trans-cinnamic acid was the predominant phenolic compound in control plants, with a concentration of 207.74 ± 1.45 µg/g DW. These results suggest that sublethal doses of heavy metals can act as abiotic elicitors, enhancing the production of phenolic compounds in B. polystachyon. The present work has the potential to open up new commercial opportunities in the pharmaceutical industry.

Arundo donax L. growth potential under different abiotic stress

Arundo donax L. (giant reed) is a fast-growing, vegetatively multiplying, and rhizomatous perennial grass. It is considered a leading crop for biomass production on marginal and degraded lands under different adverse conditions such as drought, salinity, waterlogging, high and low temperatures, and heavy metal stress. The giant reed tolerance to those stresses is reviewed based on its effects on photosynthetic capacity and biomass production. Possible explanations for the giant reed tolerance against each particular stress were elucidated, as well as changes shown by the plant at a biochemical, physiological and morphological level, that may directly affect its biomass production. The use of giant reed in other areas of interest such as bioconstruction, phytoremediation, and bioremediation, is also reviewed. Arundo donax can be key for circular economy and global warming mitigation.

Effects of cadmium on mercury accumulation and transformation by Arundo donax L

High biomass energy plants are a promising alternative to hyperaccumulators for the remediation of heavy metals (HMs). Arundo donax L. (A. donax) is a rapidly growing rhizomatous grass with high biomass production. However, the feasibility of using A. donax for the phytoremediation of combined mercury (Hg) and cadmium (Cd) pollution under neutral conditions is unclear. In this study, a hydroponic experiment was performed to investigate the impact of Hg-Cd stress on the growth and physiological properties of A. donax and HMs accumulation and transformation. Either single Hg or Cd stress slightly enhanced stem height, fresh biomass, and chlorophyll content, whereas combined Hg-Cd stress reduced these parameters. Furthermore, combined Hg-Cd stress increased the leaf content of malondialdehyde in A. donax, indicating that the combined pollution aggravated oxidative stress in A. donax. Hg volatilization was observed during the 10-day experiment, implying that a portion of the Hg²⁺ was transformed into Hg⁰ by A. donax. The bioaccumulation factor (BAF) values of A. donax were far greater than 1 for both Hg and Cd, whereas the translocation factor (TF) values were less than 1, indicating that phytovolatilization and phytostabilization rather than phytoextraction contributed to the remediation of Hg and Cd by A. donax. The solution pH decreased at the beginning of the experiment, suggesting that acidic root exudates of A. donax facilitated the accumulation and transformation of Hg under neutral conditions. Overall, the effects of Cd on Hg accumulation and transformation by A. donax followed the rule of "low promotion and high inhibition." This study demonstrates that A. donax is a potential candidate for the phytoremediation of combined Hg-Cd pollution under neutral conditions.

Identification of Known and Novel Arundo donax L. MicroRNAs and Their Targets Using High-Throughput Sequencing and Degradome Analysis

MicroRNAs (miRNAs) are a class of non-coding molecules involved in the regulation of a variety of biological processes. They have been identified and characterized in several plant species, but only limited data are available for Arundo donax L., one of the most promising bioenergy crops. Here we identified, for the first time, A. donax conserved and novel miRNAs together with their targets, through a combined analysis of high-throughput sequencing of small RNAs, transcriptome and degradome data. A total of 134 conserved miRNAs, belonging to 45 families, and 27 novel miRNA candidates were identified, along with the corresponding primary and precursor miRNA sequences. A total of 96 targets, 69 for known miRNAs and 27 for novel miRNA candidates, were also identified by degradome analysis and selected slice sites were validated by 5′-RACE. The identified set of conserved and novel candidate miRNAs, together with their targets, extends our knowledge about miRNAs in monocots and pave the way to further investigations on miRNAs-mediated regulatory processes in A. donax, Poaceae and other bioenergy crops.

Energy plants as biofuel source and as accumulators of heavy metals

Fossil fuel depletion and soil and water pollution gave impetus to the development of a novel perspective of sustainable development. In addition to the use of plant biomass for ethanol production, plants can be used to reduce the concentration of heavy metals in soil and water. Due to tolerance to high levels of metals, many plant species, crops, non-crops, medicinal, and pharmaceutical energy plants are well-known metal hyperaccumulators. This paper focuses on studies investigating the potential of Miscanthus sp., Beta vulgaris L., Saccharum sp., Ricinus communis L. Prosopis sp. and Arundo donax L. in heavy metal removal and biofuel production. Phytoremediation employing these plants showed great potential for bioaccumulation of Co, Cr, Cu, Al, Pb, Ni, Fe, Cd, Zn, Hg, Se, etc. This review presents the potential of lignocellulose plants to remove pollutants being a valuable substrate for biofuel production. Also, pretreat-ments, dealing with toxic biomass, and biofuel production are discussed.

Silicon alleviates antimony phytotoxicity in giant reed (Arundo donax L.)

Silicon enhances photosynthetic efficiency, biomass, and lignification of root structures possibly limiting antimony translocation and mitigating phytotoxicity in giant reed plants. Antimony (Sb) is a non-essential metalloid causing toxic effects in plants. Silicon has been reported to impart tolerance against biotic and abiotic stress in plants. Fast-growing plant, giant reed (Arundo donax L.) is a promising energy crop, can be a suitable plant for phytoremediation. However, information regarding the tolerance capacity with respect to Sb toxicity and potential of Si to mitigate the Sb phytotoxicity in giant reed are very scarce. Rhizomes of giant reed were grown for ten weeks in hydroponics exposed to Sb, Si, and their combination wherein treatment without Sb/Si served as control. Effect of these treatments on rate of net photosynthesis and photosynthetic pigments, phytoextraction ability of Sb, Si and Sb uptake, plant biomass, and lignification and suberization of roots along with localization of Sb and Si were analysed. We found that Si considerably improved the growth and biomass of giant reed under Sb toxicity. Antimony reduced the photosynthesis and decreased the content of photosynthetic pigments, which was completely alleviated by Si. Silicon amendment to Sb treated plants enhanced root lignification. Silicon enhanced lignification of root structures probably restricted the Sb translocation. However, co-localization of Sb with Si has not been observed neither at the shoot nor at the root levels. Similarly, Sb was also not detected in leaf phytoliths. These findings suggest that Si treatment promotes overall plant growth by improving photosynthetic parameters and decreasing Sb translocation from root to shoot in giant reed by improving root lignification.

Comparison of the single and combined effects of arsenic and antimony on growth and physiology of giant reed (Arundo donax L.)

Fast-growing plant, giant reed (Arundo donax L.) has been gaining a lot of popularity in the phytoremediation of metal-polluted soils. However, information regarding the physiological background of tolerance and accumulation capacity of A. donax with respect to antimony (Sb), arsenic (As), and their co-contamination are very limited. Rooted stem cuttings were grown for 5 months in hydroponics exposed to Sb (10 mg L^-1), As (10 mg L^-1), and their combined toxicity (Sb 5 mg L^-1 + As 5 mg L^-1) wherein treatment without As/Sb served as control. Effect of these treatments on key photosynthetic parameters (rate of net photosynthesis, effective quantum yield of photosystem II, chlorophyll fluorescence, and photosynthetic pigments), phytoextraction ability of metalloids, nutrient uptake, root growth, and lignification were analyzed. Arsenic-containing treatments severely affected root morphology of A. donax compared to Sb/control and plants exposed to As showed intensive lignification already in young apical part of the root in the present study. Shoot concentration was found to be 11.35±0.75 Sb mg kg^-1 and 8.97±0.52 As mg kg^-1 compared to root concentration of 1028.3±19.1 Sb mg kg^-1 and 705.3±69.9 As mg kg^-1 in the treatments of Sb and As. Even though Sb and As were translocated to the shoots in relatively small amount, both metalloids significantly decreased the shoot and root growth of A. donax and negatively affected the photosynthetic parameters. Moreover, co-contamination of Sb and As proved to be severely toxic to growth and physiology of A. donax even though the magnitudes of the metalloids used were lower than those of Sb/As alone treatments. In conclusion, Sb and As caused a marked reduction in growth and physiological characteristics of A. donax, opposing its use in phytoremediation of highly contaminated soils. Tolerance capacity of plants to simultaneous presence of As and Sb in the environment is crucial for the successful implementation of phytoremediation since the co-contamination by As and Sb might reduce the efficiency of phytoremediation when using this fast-growing and high biomass-producing plant species.

Phytoremediation of aniline by Salix babylonica cuttings: Removal, accumulation, and photosynthetic response

Aniline, a synthetic compound widely used in industrial and pesticide production, is a potential environmental pollutant. The removal of aniline is extremely important to minimize threats to human health and the surrounding environment. The objectives of this study were to investigate the removal efficiency and physiological response of Salix. babylonica cuttings to aniline pollution. Photosynthesis, chlorophyll fluorescence, spectral reflectance and the concentration of aniline in leaves, stems and roots were analysed. The experiment showed that S. babylonica has a strong removal effect on aniline wastewater. Cuttings from S. babylonica stems and roots played an important role in accumulating aniline. However, this increase in aniline concentration was dose dependent and was not always linear. With increasing aniline concentration in S. babylonica was increasingly stressed, with negative impacts on photosynthesis, chlorophyll fluorescence and spectral reflectance index in S. babylonica leaves. These results indicate that non-stomatal limitations are the main reason for the reduction in Pn in S. babylonica leaves due to chlorophyll structure destruction under aniline stress. In addition, aniline concentrations result in an unbalanced distribution of excitation energy between the two light systems, thereby hindering photosynthetic electron transfer and restricting the efficient operation of photosynthesis. Salix babylonica can endure moderate concentrations of aniline and has potential for the phyto-management of aniline-polluted wastewater, although further studies are needed using polluted wastewater.

Chromium Stress in Plants: Toxicity, Tolerance and Phytoremediation

Extensive industrial activities resulted in an increase in chromium (Cr) contamination in the environment. The toxicity of Cr severely affects plant growth and development. Cr is also recognized as a human carcinogen that enters the human body via inhalation or by consuming Cr-contaminated food products. Taking consideration of Cr enrichment in the environment and its toxic effects, US Environmental Protection Agency and Agency for Toxic Substances and Disease Registry listed Cr as a priority pollutant. In nature, Cr exists in various valence states, including Cr(III) and Cr(VI). Cr(VI) is the most toxic and persistent form in soil. Plants uptake Cr through various transporters such as phosphate and sulfate transporters. Cr exerts its effect by generating reactive oxygen species (ROS) and hampering various metabolic and physiological pathways. Studies on genetic and transcriptional regulation of plants have shown the various detoxification genes get up-regulated and confer tolerance in plants under Cr stress. In recent years, the ability of the plant to withstand Cr toxicity by accumulating Cr inside the plant has been recognized as one of the promising bioremediation methods for the Cr contaminated region. This review summarized the Cr occurrence and toxicity in plants, role of detoxification genes in Cr stress response, and various plants utilized for phytoremediation in Cr-contaminated regions.

Ornamental plants for the phytoremediation of heavy metals: Present knowledge and future perspectives

Environmental matrices are polluted with the plethora of contaminants, and among these, the concerns related to heavy metals (HMs) are also included. Due to the low cost in a long-term application and environmental friendliness, the use of biological remediation has gained significant attention in recent decades. The use of ornamental plants (OPs) in the field of phytoremediation is scarcely reported, and the impacts of HMs on OPs have also not been investigated in great depth. The OPs mediated HMs remediation can simultaneously remove contaminants and bring improvement in aesthetics of the site. The biomass of OPs produced after such activities can be used and sold as pot plants, cut flowers, essential oils, perfumes, air fresheners production, metal phytomining, and feedstock in silk production. The OPs also present a lower risk of HMs bioaccumulation compared to crop plants. This review focuses on the current knowledge of HMs toxicity to OPs, their applicability advantages, methods to improve the tolerance of OPs with incremented HMs uptake, challenges in the field, and future application perspectives. The case studies realted to practical application of OPs, from China, Iran, India, Oman, Pakistan, and Turkey, were also discussed. This work fetches the inter-disciplinary features and understanding for the sustainable treatment of HMs in a new novel way, to which no previous review has focused.

UAV-Based LiDAR for High-Throughput Determination of Plant Height and Above-Ground Biomass of the Bioenergy Grass Arundo donax

Replacing fossil fuels with cellulosic biofuels is a valuable component of reducing the drivers of climate change. This leads to a requirement to develop more productive bioenergy crops, such as Arundo donax with the aim of increasing above-ground biomass (AGB). However, direct measurement of AGB is time consuming, destructive, and labor-intensive. Phenotyping of plant height and biomass production is a bottleneck in genomics- and phenomics-assisted breeding. Here, an unmanned aerial vehicle (UAV) for remote sensing equipped with light detection and ranging (LiDAR) was tested for remote plant height and biomass determination in A. donax. Experiments were conducted on three A. donax ecotypes grown in well-watered and moderate drought stress conditions. A novel UAV-LiDAR data collection and processing workflow produced a dense three-dimensional (3D) point cloud for crop height estimation through a normalized digital surface model (DSM) that acts as a crop height model (CHM). Manual measurements of crop height and biomass were taken in parallel and compared to LiDAR CHM estimates. Stepwise multiple regression was used to estimate biomass. Analysis of variance (ANOVA) tests and pairwise comparisons were used to determine differences between ecotypes and drought stress treatments. We found a significant relationship between the sensor readings and manually measured crop height and biomass, with determination coefficients of 0.73 and 0.71 for height and biomass, respectively. Differences in crop heights were detected more precisely from LiDAR estimates than from manual measurement. Crop biomass differences were also more evident in LiDAR estimates, suggesting differences in ecotypes’ productivity and tolerance to drought. Based on these results, application of the presented UAV-LiDAR workflow will provide new opportunities in assessing bioenergy crop morpho-physiological traits and in delivering improved genotypes for biorefining.