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Fiedor L, Dudkowiak A, Pilch M. The origin of the dark S 1 state in carotenoids: a comprehensive model. J R Soc Interface 2019; 16:20190191. [PMID: 31480924 DOI: 10.1098/rsif.2019.0191] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
In carotenoids, by analogy to polyenes, the symmetry of the π-electron system is often invoked to explain their peculiar electronic features, in particular the inactivity of the S0 → S1 transition in one-photon excitation. In this review, we verify whether the molecular symmetry of carotenoids and symmetry of their π-electron system are supported in experimental and computational studies. We focus on spectroscopic techniques which are sensitive to the electron density distribution, including the X-ray crystallography, electronic absorption, two-photon techniques, circular dichroism, nuclear magnetic resonance, Stark and vibrational spectroscopies, and on this basis we seek for the origin of inactivity of the S1 state. We come across no experimental and computational evidence for the symmetry effects and the existence of symmetry restrictions on the electronic states of carotenoids. They do not possess an inversion centre and the C2h symmetry approximation of carotenoid structure is by no means justified. In effect, the application of symmetry rules (and notification) to the electronic states of carotenoids in this symmetry group may lead to a wrong interpretation of experimental data. This conclusion together with the results summarized in the review allows us to advance a consistent model that explains the inactivity of the S0 → S1 transition. Within this model, S1 is never accessible from S0 due to the negative synergy of (i) the contributions of double excitations of very low probability, which elevate S1 energy, and (ii) a non-verticality of the S0 → S1 transition, due to the breaking of Born-Oppenheimer approximation. Certainly, our simple model requires a further experimental and theoretical verification.
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Affiliation(s)
- Leszek Fiedor
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30387 Kraków, Poland
| | - Alina Dudkowiak
- Faculty of Technical Physics, Poznan University of Technology, Piotrowo 3, 60965 Poznan, Poland
| | - Mariusz Pilch
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30387 Kraków, Poland.,Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30387 Kraków, Poland
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Fiedor L, Pilch M. Side Methyl Groups Control the Conformation and Contribute to Symmetry Breaking of Isoprenoid Chromophores. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201802094] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Leszek Fiedor
- Faculty of Biochemistry, Biophysics and BiotechnologyJagiellonian University Gronostajowa 7 30-387 Kraków Poland
| | - Mariusz Pilch
- Faculty of Biochemistry, Biophysics and BiotechnologyJagiellonian University Gronostajowa 7 30-387 Kraków Poland
- Faculty of ChemistryJagiellonian University Gronostajowa 2 30-387 Kraków Poland
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Fiedor L, Pilch M. Side Methyl Groups Control the Conformation and Contribute to Symmetry Breaking of Isoprenoid Chromophores. Angew Chem Int Ed Engl 2018; 57:6501-6506. [PMID: 29601118 DOI: 10.1002/anie.201802094] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Indexed: 01/02/2023]
Abstract
Ab initio DFT computations reveal that the essential structural and photophysical features of the conjugated π-electron system of retinal and carotenoids are dictated by "innocent" methyl substituents. These methyl groups shape the conformation and symmetry of the isoprenoid chromophores by causing a sigmoidal distortion of the polyene skeleton and increasing its flexibility, which facilitates fitting to their binding pockets in proteins. Comparison of in vacuo conformations of the chromophores with their native (protein-bound) conformations showed, surprisingly, that the peripheral groups and interactions with the protein environment are much less significant than the methyl side groups in tuning their structural features. The methyl side groups also contribute to a loss of symmetry elements specific to linear polyenes. In effect, the symmetry-imposed restrictions on the chromophore electronic properties are disabled, which is of tremendous relevance to their photophysics. This is evidenced by their non-negligible permanent dipole moments and by the simulated and experimentally measured circular dichroism spectra, which necessarily reflect the chirality of the conjugated π-electron system.
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Affiliation(s)
- Leszek Fiedor
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland
| | - Mariusz Pilch
- Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland.,Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Kraków, Poland
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Davey PA, Pernice M, Ashworth J, Kuzhiumparambil U, Szabó M, Dolferus R, Ralph PJ. A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. MARINE ENVIRONMENTAL RESEARCH 2018; 134:55-67. [PMID: 29307464 DOI: 10.1016/j.marenvres.2017.12.012] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 11/12/2017] [Accepted: 12/17/2017] [Indexed: 05/28/2023]
Abstract
In this study we investigated the effect of light-limitation (∼20 μmol photons m-2 s-1) on the southern hemisphere seagrass, Zostera muelleri. RNA sequencing, chlorophyll fluorometry and HPLC techniques were used to investigate how the leaf-specific transcriptome drives changes in photosynthesis and photo-pigments in Z. muelleri over 6 days. 1593 (7.51%) genes were differentially expressed on day 2 and 1481 (6.98%) genes were differentially expressed on day 6 of the experiment. Differential gene expression correlated with significant decreases in rETRMax, Ik, an increase in Yi (initial photosynthetic quantum yield of photosystem II), and significant changes in pigment composition. Regulation of carbohydrate metabolism was observed along with evidence that abscisic acid may serve a role in the low-light response of this seagrass. This study provides a novel understanding of how Z. muelleri responds to light-limitation in the marine water column and provides potential molecular markers for future conservation monitoring efforts.
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Affiliation(s)
- Peter A Davey
- Climate Change Cluster, University of Technology Sydney, NSW, Australia; Centre for Tropical Water and Aquatic Ecosystem Research (TropWater), James Cook University, Cairns, QLD, Australia.
| | - Mathieu Pernice
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
| | - Justin Ashworth
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
| | | | - Milán Szabó
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
| | - Rudy Dolferus
- CSIRO Agriculture and Food, Black Mountain, Canberra, ACT, Australia
| | - Peter J Ralph
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
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Janik E, Bednarska J, Zubik M, Sowinski K, Luchowski R, Grudzinski W, Matosiuk D, Gruszecki WI. The xanthophyll cycle pigments, violaxanthin and zeaxanthin, modulate molecular organization of the photosynthetic antenna complex LHCII. Arch Biochem Biophys 2016; 592:1-9. [PMID: 26773208 DOI: 10.1016/j.abb.2016.01.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Revised: 12/18/2015] [Accepted: 01/05/2016] [Indexed: 10/22/2022]
Abstract
The effect of violaxanthin and zeaxanthin, two main carotenoids of the xanthophyll cycle, on molecular organization of LHCII, the principal photosynthetic antenna complex of plants, was studied in a model system based on lipid-protein membranes, by means of analysis of 77 K chlorophyll a fluorescence and "native" electrophoresis. Violaxanthin was found to promote trimeric organization of LHCII, contrary to zeaxanthin which was found to destabilize trimeric structures. Moreover, violaxanthin was found to induce decomposition of oligomeric LHCII structures formed in the lipid phase and characterized by the fluorescence emission band at 715 nm. Both pigments promoted formation of two-component supramolecular structures of LHCII and xanthophylls. The violaxanthin-stabilized structures were composed mostly of LHCII trimers while, the zeaxanthin-stabilized supramolecular structures of LHCII showed more complex organization which depended periodically on the xanthophyll content. The effect of the xanthophyll cycle pigments on molecular organization of LHCII was analyzed based on the results of molecular modeling and discussed in terms of a physiological meaning of this mechanism. Supramolecular structures of LHCII stabilized by violaxanthin, prevent uncontrolled oligomerization of LHCII, potentially leading to excitation quenching, therefore can be considered as structures protecting the photosynthetic apparatus against energy loses at low light intensities.
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Affiliation(s)
- Ewa Janik
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland
| | - Joanna Bednarska
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland
| | - Monika Zubik
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland
| | - Karol Sowinski
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland; Faculty of Pharmacy, Medical University, Lublin, Poland
| | - Rafal Luchowski
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland
| | - Wojciech Grudzinski
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland
| | | | - Wieslaw I Gruszecki
- Department of Biophysics, Institute of Physics, Maria Curie-Skłodowska University, 20-031, Lublin, Poland.
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Zubik M, Luchowski R, Puzio M, Janik E, Bednarska J, Grudzinski W, Gruszecki WI. The negative feedback molecular mechanism which regulates excitation level in the plant photosynthetic complex LHCII: towards identification of the energy dissipative state. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2012; 1827:355-64. [PMID: 23219754 DOI: 10.1016/j.bbabio.2012.11.013] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2012] [Revised: 11/19/2012] [Accepted: 11/26/2012] [Indexed: 11/24/2022]
Abstract
Overexcitation of the photosynthetic apparatus is potentially dangerous because it can cause oxidative damage. Photoprotection realized via the feedback de-excitation in the pigment-protein light-harvesting complex LHCII, embedded in the chloroplast lipid environment, was studied with use of the steady-state and time-resolved fluorescence spectroscopy techniques. Illumination of LHCII results in the pronounced singlet excitation quenching, demonstrated by decreased quantum yield of the chlorophyll a fluorescence and shortening of the fluorescence lifetimes. Analysis of the 77K chlorophyll a fluorescence emission spectra reveals that the light-driven excitation quenching in LHCII is associated with the intensity increase of the spectral band in the region of 700nm, relative to the principal band at 680nm. The average chlorophyll a fluorescence lifetime at 700nm changes drastically upon temperature decrease: from 1.04ns at 300K to 3.63ns at 77K. The results of the experiments lead us to conclude that: (i) the 700nm band is associated with the inter-trimer interactions which result in the formation of the chlorophyll low-energy states acting as energy traps and non-radiative dissipation centers; (ii) the Arrhenius analysis, supported by the results of the FTIR measurements, suggests that the photo-reaction can be associated with breaking of hydrogen bonds. Possible involvement of photo-isomerization of neoxanthin, reported previously (Biochim. Biophys. Acta 1807 (2011) 1237-1243) in generation of the low-energy traps in LHCII is discussed.
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Affiliation(s)
- Monika Zubik
- Department of Biophysics, Institute of Physics, Maria Curie-Sklodowska University, Lublin, Poland
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Kröner D, Götze JP. Modeling of a violaxanthin-chlorophyll b chromophore pair in its LHCII environment using CAM-B3LYP. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY. B, BIOLOGY 2012; 109:12-9. [PMID: 22306026 DOI: 10.1016/j.jphotobiol.2011.12.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2011] [Revised: 11/25/2011] [Accepted: 12/18/2011] [Indexed: 02/04/2023]
Abstract
Collecting energy for photosystem II is facilitated by several pigments, xanthophylls and chlorophylls, embedded in the light harvesting complex II (LHCII). One xanthophyll, violaxanthin (Vio), is loosely bound at a site close to a chlorophyll b (Chl). No final answer has yet been found for the role of this specific xanthophyll. We study the electronic structure of Vio in the presence of Chl and under the influence of the LHCII environment, represented by a point charge field (PCF). We compare the capability of the long range corrected density functional theory (DFT) functional CAM-B3LYP to B3LYP for the modeling of the UV/vis spectrum of the Vio+Chl pair. CAM-B3LYP was reported to allow for a very realistic reproduction of bond length alternation of linear polyenes, which has considerable impact on the carotenoid structure and spectrum. To account for the influence of the LHCII environment, the chromophore geometries are optimized using an ONIOM(DFT/6-31G(d):PM6) scheme. Our calculations show that the energies of the locally excited states are almost unaffected by the presence of the partner chromophore or the PCF. There are, however, indications for excitonic coupling of the Chl Soret band and Vio. We propose that Vio may accept energy from blue-light excited Chl.
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Affiliation(s)
- Dominik Kröner
- Theoretische Chemie, Institut für Chemie, Universität Potsdam, Karl-Liebknecht-Straße 24-25, D-14476 Potsdam, Germany
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Janik E, Maksymiec W, Grudziński W, Gruszecki WI. Strong light-induced reorganization of pigment-protein complexes of thylakoid membranes in rye (spectroscopic study). JOURNAL OF PLANT PHYSIOLOGY 2012; 169:65-71. [PMID: 22074666 DOI: 10.1016/j.jplph.2011.08.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2011] [Revised: 08/16/2011] [Accepted: 08/16/2011] [Indexed: 05/31/2023]
Abstract
The supramolecular reorganization of LHCII complexes within the thylakoid membrane in Secale cereale leaves under low and high light condition was examined. Rye seedlings were germinated hydroponically in a climate chamber with a 16 h daylight photoperiod, photosynthetic photon flux density (PPFD) of 150 μmo lm(-2)s(-1) and 24/16°C day/night temperature. The influence of pre-illumination of the plants with high light intensity on the PSII antenna complexes was studied by comparison of the structure and function of the LHCII complexes and organization of thylakoid membranes isolated from 10-day-old plants illuminated with low (150 μmo lm(-2)s(-1)) or high (1200 μmo lm(-2)s(-1)) light intensity. Aggregated and trimeric with monomeric forms of LHCII complexes were separated from the whole thylakoid membranes using non-denaturing electrophoresis. Analyses of fluorescence emission spectra of these different LHCII forms showed that the monomer was the most effective aggregating antenna form. Moreover, photoprotection connected with LHCII aggregation was more effective upon LHCII monomers in comparison to trimer aggregation. Light stress induced specific organization of neighboring LHCII complexes, causing an increase in fluorescence yield of the long-wavelength bands (centered at 701 and 734 nm). The changes in the organization of the thylakoid membrane under light stress, observed by analysis of absorbance spectra obtained by Fourier transform infrared spectroscopy, also indicated light-induced LHCII aggregation.
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Affiliation(s)
- Ewa Janik
- Department of Plant Physiology, Institute of Biology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland.
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Jahns P, Holzwarth AR. The role of the xanthophyll cycle and of lutein in photoprotection of photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1817:182-93. [PMID: 21565154 DOI: 10.1016/j.bbabio.2011.04.012] [Citation(s) in RCA: 609] [Impact Index Per Article: 46.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2011] [Revised: 03/31/2011] [Accepted: 04/02/2011] [Indexed: 11/18/2022]
Abstract
Photoprotection of photosystem II (PSII) is essential to avoid the light-induced damage of the photosynthetic apparatus due to the formation of reactive oxygen species (=photo-oxidative stress) under excess light. Carotenoids are known to play a crucial role in these processes based on their property to deactivate triplet chlorophyll (³Chl*) and singlet oxygen (¹O₂*). Xanthophylls are further assumed to be involved either directly or indirectly in the non-photochemical quenching (NPQ) of excess light energy in the antenna of PSII. This review gives an overview on recent progress in the understanding of the photoprotective role of the xanthophylls zeaxanthin (which is formed in the light in the so-called xanthophyll cycle) and lutein with emphasis on the NPQ processes associated with PSII of higher plants. The current knowledge supports the view that the photoprotective role of Lut is predominantly restricted to its function in the deactivation of ³Chl*, while zeaxanthin is the major player in the deactivation of excited singlet Chl (¹Chl*) and thus in NPQ (non-photochemical quenching). Additionally, zeaxanthin serves important functions as an antioxidant in the lipid phase of the membrane and is likely to act as a key component in the memory of the chloroplast with respect to preceding photo-oxidative stress. This article is part of a Special Issue entitled: Photosystem II.
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Affiliation(s)
- Peter Jahns
- Plant Biochemistry, Heinrich-Heine-University Düsseldorf, Universitätsstr.1, D-40225 Düsseldorf, Germany.
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Gruszecki WI, Zubik M, Luchowski R, Grudzinski W, Gospodarek M, Szurkowski J, Gryczynski Z, Gryczynski I. Investigation of the molecular mechanism of the blue-light-specific excitation energy quenching in the plant antenna complex LHCII. JOURNAL OF PLANT PHYSIOLOGY 2011; 168:409-414. [PMID: 20950892 DOI: 10.1016/j.jplph.2010.08.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Revised: 08/02/2010] [Accepted: 08/02/2010] [Indexed: 05/30/2023]
Abstract
Excitation of the major photosynthetic antenna complex of plants, LHCII, with blue light (470nm) provides an advantage to plants, as it gives rise to chlorophyll a fluorescence lifetimes shorter than with excitation with red light (635nm). This difference is particularly pronounced in fluorescence emission wavelengths longer than 715nm. Illumination of LHCII preparation with blue light additionally induces fluorescence quenching, which develops on a minute timescale. This effect is much less efficient when induced by red light, despite the equalized energy absorbed in both the spectral regions. Simultaneous analysis of the fluorescence and photoacoustic signals in LHCII demonstrated that the light-driven fluorescence quenching is not associated with an increase in heat emission. Instead, a reversible light-induced conformational transformation of the protein takes place, as demonstrated by the FTIR technique. These findings are discussed in terms of the blue-light-specific excitation energy quenching in LHCII, which may have photoprotective applications.
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Affiliation(s)
- Wieslaw I Gruszecki
- Department of Biophysics, Institute of Physics, Maria Curie-Sklodowska University, 20 031 Lublin, Poland.
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