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Sepehri A, Li RR, Hoffmann MR. Riemannian Trust Region Method for Minimization of the Fourth Central Moment for Localized Molecular Orbitals. J Phys Chem A 2023. [PMID: 37285307 DOI: 10.1021/acs.jpca.3c01295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The importance of localized molecular orbitals (MOs) in correlation treatments beyond mean-field calculation and in the illustration of chemical bonding (and antibonding) can hardly be overstated. However, the generation of orthonormal localized occupied MOs is significantly more straightforward than obtaining orthonormal localized virtual MOs. Orthonormal MOs allow facile use of highly efficient group theoretical methods (e.g., graphical unitary group approach) for calculation of Hamiltonian matrix elements in multireference configuration interaction calculations (such as MRCISD) and in quasi-degenerate perturbation treatments, such as the Generalized Van Vleck Perturbation Theory. Moreover, localized MOs can elucidate qualitative understanding of bonding in molecules, in addition to high-accuracy quantitative descriptions. We adopt the powers of the fourth moment cost function introduced by Jørgensen and coworkers. Because the fourth moment cost functions are prone to having multiple negative Hessian eigenvalues when starting from easily available canonical (or near-canonical) MOs, standard optimization algorithms can fail to obtain the orbitals of the virtual or partially occupied spaces. To overcome this drawback, we applied a trust region algorithm on an orthonormal Riemannian manifold with an approximate retraction from the tangent space built into the first and second derivatives of the cost function. Moreover, the Riemannian trust region outer iterations were coupled to truncated Conjugate Gradient inner loops, which avoided any costly solutions of simultaneous linear equations or eigenvector/eigenvalue solutions. Numerical examples are provided on model systems, including the high-connectivity H10 set in 1-, 2-, and 3-dimensional arrangements, and on a chemically realistic description of cyclobutadiene (c-C4H4) and the propargyl radical (C3H3). In addition to demonstrating the algorithm on occupied and virtual blocks of orbitals, the method is also shown to work on the active space at the MCSCF level of theory.
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Affiliation(s)
- Aliakbar Sepehri
- Chemistry Department, University of North Dakota, Grand Forks, North Dakota 58202-9024, United States
| | - Run R Li
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Mark R Hoffmann
- Chemistry Department, University of North Dakota, Grand Forks, North Dakota 58202-9024, United States
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2
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Li RR, Hoffmann MR. Theoretical Calculations of the 242 nm Absorption of Propargyl Radical. J Phys Chem A 2021; 125:8595-8602. [PMID: 34570514 DOI: 10.1021/acs.jpca.1c05672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The propargyl radical, the most stable isomer of neutral C3H3, is important in combustion reactions, and a number of spectroscopic and reaction dynamics studies have been performed over the years. However, theoretical calculations have never been able to find a state that can generate strong absorption around 242 nm as seen in experiments. In this study, we calculated the low-lying electronic energy levels of the propargyl radical using the highly accurate multireference configuration interaction singles and doubles method with triples and quadruples treated perturbatively [denoted as MRCISD(TQ)]. Calculations indicate that this absorption can be attributed to a Franck-Condon-allowed electronic transition from the ground 2B1 state to the Rydberg-like excited state 12A1. Further insight into the behavior of the multireference perturbative theory methods, GVVPT2 and GVVPT3, on a very challenging system are also obtained.
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Affiliation(s)
- Run R Li
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, United States
| | - Mark R Hoffmann
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, United States
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3
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Reusch E, Holzmeier F, Gerlach M, Fischer I, Hemberger P. Decomposition of Picolyl Radicals at High Temperature: A Mass Selective Threshold Photoelectron Spectroscopy Study. Chemistry 2019; 25:16652-16659. [PMID: 31637775 PMCID: PMC6972682 DOI: 10.1002/chem.201903937] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Revised: 10/16/2019] [Indexed: 01/24/2023]
Abstract
The reaction products of the picolyl radicals at high temperature were characterized by mass-selective threshold photoelectron spectroscopy in the gas phase. Aminomethylpyridines were pyrolyzed to initially produce picolyl radicals (m/z=92). At higher temperatures further thermal reaction products are generated in the pyrolysis reactor. All compounds were identified by mass-selected threshold photoelectron spectroscopy and several hitherto unexplored reactive molecules were characterized. The mechanism for several dissociation pathways was outlined in computations. The spectrum of m/z=91, resulting from hydrogen loss of picolyl, shows four isomers, two ethynyl pyrroles with adiabatic ionization energies (IEad ) of 7.99 eV (2-ethynyl-1H-pyrrole) and 8.12 eV (3-ethynyl-1H-pyrrole), and two cyclopentadiene carbonitriles with IE's of 9.14 eV (cyclopenta-1,3-diene-1-carbonitrile) and 9.25 eV (cyclopenta-1,4-diene-1-carbonitrile). A second consecutive hydrogen loss forms the cyanocyclopentadienyl radical with IE's of 9.07 eV (T0 ) and 9.21 eV (S1 ). This compound dissociates further to acetylene and the cyanopropynyl radical (IE=9.35 eV). Furthermore, the cyclopentadienyl radical, penta-1,3-diyne, cyclopentadiene and propargyl were identified in the spectra. Computations indicate that dissociation of picolyl proceeds initially via a resonance-stabilized seven-membered ring.
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Affiliation(s)
- Engelbert Reusch
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Fabian Holzmeier
- Dipartimento di FisicaPolitecnico di MilanoPiazza Leonardo da Vinci 3220133MilanoItaly
| | - Marius Gerlach
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Ingo Fischer
- Institute of Physical and Theoretical ChemistryUniversity of WürzburgAm Hubland Süd97074WürzburgGermany
| | - Patrick Hemberger
- Laboratory for Femtochemistry and Synchrotron RadiationPaul Scherrer Institut (PSI)5232VilligenSwitzerland
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Hrodmarsson HR, Loison JC, Jacovella U, Holland DMP, Boyé-Péronne S, Gans B, Garcia GA, Nahon L, Pratt ST. Valence-Shell Photoionization of C4H5: The 2-Butyn-1-yl Radical. J Phys Chem A 2019; 123:1521-1528. [DOI: 10.1021/acs.jpca.8b11809] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- H. R. Hrodmarsson
- Synchrotron Soleil, L’Orme des Merisiers, F-91192 Gif-sur-Yvette, France
| | - J.-C. Loison
- Institut des Sciences Moléculaires, Université Bordeaux, 33400 Talence, France
| | - U. Jacovella
- Laboratorium für Physikalische Chemie, ETH Zürich, 8093 Zürich, Switzerland
| | - D. M. P. Holland
- STFC, Daresbury Laboratory, Daresbury, Warrington, Cheshire WA4 4AD, United Kingdom
| | - S. Boyé-Péronne
- Institut des Sciences Moléculaires d’Orsay, UMR 8214, CNRS & Univ. Paris-Sud & Université Paris-Saclay, F-91405 Orsay, France
| | - B. Gans
- Institut des Sciences Moléculaires d’Orsay, UMR 8214, CNRS & Univ. Paris-Sud & Université Paris-Saclay, F-91405 Orsay, France
| | - G. A. Garcia
- Synchrotron Soleil, L’Orme des Merisiers, F-91192 Gif-sur-Yvette, France
| | - L. Nahon
- Synchrotron Soleil, L’Orme des Merisiers, F-91192 Gif-sur-Yvette, France
| | - S. T. Pratt
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Argonne, Illinois 60439 United States
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Garcia GA, Gans B, Krüger J, Holzmeier F, Röder A, Lopes A, Fittschen C, Alcaraz C, Loison JC. Valence shell threshold photoelectron spectroscopy of C3Hx (x = 0–3). Phys Chem Chem Phys 2018. [DOI: 10.1039/c8cp00510a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present the photoelectron spectra of C3Hx (x = 0–3) formed in a microwave discharge flow-tube reactor by consecutive H abstractions from C3H4 (C3Hx + F → C3Hx−1 + HF (x = 1–4)), but also from F + CH4 schemes by secondary reactions.
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Affiliation(s)
| | | | - Julia Krüger
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
| | - Fabian Holzmeier
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
- Laboratoire de Chimie Physique d'Orsay
| | - Anja Röder
- Synchrotron SOLEIL
- L'Orme des Merisiers
- Gif sur Yvette
- France
| | - Allan Lopes
- CNRS – Université Paris-Sud et Paris-Saclay
- Laboratoire de Chimie Physique
- UMR 8000
- Centre Universitaire Paris-Sud
- 91405 Orsay
| | | | - Christian Alcaraz
- CNRS – Université Paris-Sud et Paris-Saclay
- Laboratoire de Chimie Physique
- UMR 8000
- Centre Universitaire Paris-Sud
- 91405 Orsay
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Hemberger P, da Silva G, Trevitt AJ, Gerber T, Bodi A. Are the three hydroxyphenyl radical isomers created equal?--The role of the phenoxy radical. Phys Chem Chem Phys 2015; 17:30076-83. [PMID: 26500055 DOI: 10.1039/c5cp05346c] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have investigated the thermal decomposition of the three hydroxyphenyl radicals (˙C6H4OH) in a heated microtubular reactor. Intermediates and products were identified isomer-selectively applying photoion mass-selected threshold photoelectron spectroscopy with vacuum ultraviolet synchrotron radiation. Similarly to the phenoxy radical (C6H5-O˙), hydroxyphenyl decomposition yields cyclopentadienyl (c-C5H5) radicals in a decarbonylation reaction at elevated temperatures. This finding suggests that all hydroxyphenyl isomers first rearrange to form phenoxy species, which subsequently decarbonylate, a mechanism which we also investigate computationally. Meta- and para-radicals were selectively produced and spectroscopically detectable, whereas the ortho isomer could not be traced due to its fast rethermalization and rapid decomposition in the reactor. A smaller barrier to isomerization to phenoxy was found to be the reason for this observation. Since hydroxyphenyl species may be present under typical sooting conditions in flames, the resonantly stabilized cyclopentadienyl radical adds to the hydrocarbon pool and can contribute to the formation of polycyclic aromatic hydrocarbons, which are precursors in soot formation.
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Affiliation(s)
- P Hemberger
- Molecular Dynamics Group, Paul Scherrer Institute, 5232 Villigen PSI, Switzerland.
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8
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Jacovella U, Gans B, Merkt F. On the adiabatic ionization energy of the propargyl radical. J Chem Phys 2013; 139:084308. [DOI: 10.1063/1.4818982] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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9
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Xu H, Pratt ST. Photoionization Cross Section of the Propargyl Radical and Some General Ideas for Estimating Radical Cross Sections. J Phys Chem A 2012. [DOI: 10.1021/jp309874q] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hong Xu
- Argonne National Laboratory, Argonne, Illinois 60439, United States
| | - S. T. Pratt
- Argonne National Laboratory, Argonne, Illinois 60439, United States
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10
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Affiliation(s)
- Michael A. Duncan
- Department
of Chemistry, University of Georgia, Athens, Georgia 30602, United
States
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11
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Gao H, Lu Z, Yang L, Zhou J, Ng CY. Communication: A vibrational study of propargyl cation using the vacuum ultraviolet laser velocity-map imaging photoelectron method. J Chem Phys 2012; 137:161101. [PMID: 23126688 DOI: 10.1063/1.4764306] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
By employing the vacuum ultraviolet (VUV) laser velocity-map imaging photoelectron (VUV-VMI-PE) method, we have obtained a vibrationally resolved photoelectron spectrum of gaseous propargyl radical [C(3)H(3)(X(2)B(1))] in the energy range of 0-4600 cm(-1) above its ionization energy. The cold C(3)H(3) radicals were produced from a supersonically cooled radical beam source based on 193 nm ArF photodissociation of C(3)H(3)Cl. The VUV-VMI-PE spectrum of C(3)H(3) thus obtained reveals a Franck-Condon factor (FCF) pattern with a highly dominant origin band along with weak vibrational progressions associated with excitations of the C-C ν(5)(+)(a(1)) and C≡C ν(3)(+)(a(1)) symmetric stretching modes and the CCH ν(7)(+)(b(1)) out-of-plane bending mode of C(3)H(3)(+)(X(1)A(1)). The ν(5)(+)(a(1)) vibrational frequency of 1120 cm(-1) determined in the present study is lower than the value deduced from the recent Ar-tagged infrared photodissociation study by 102 cm(-1), confirming the highly accurate vibrational frequency predictions obtained by the most recent state-of-the-art ab initio quantum calculations. The observation of the FCF disallowed ν(7)(+)(b(1)) mode is indicative of vibronic interactions. The discrepancy observed between the FCF pattern determined in the present study and that predicted by a recent high-level quantum theoretical investigation can be taken as evidence that the potential energy surfaces used in the latter theoretical study are in need of improvement in order to provide a reliable FCF prediction for the C(3)H(3)/C(3)H(3)(+) photoionization system.
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Affiliation(s)
- Hong Gao
- Department of Chemistry, University of California, Davis, California 95616, USA
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12
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Savee JD, Soorkia S, Welz O, Selby TM, Taatjes CA, Osborn DL. Absolute photoionization cross-section of the propargyl radical. J Chem Phys 2012; 136:134307. [PMID: 22482552 DOI: 10.1063/1.3698282] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using synchrotron-generated vacuum-ultraviolet radiation and multiplexed time-resolved photoionization mass spectrometry we have measured the absolute photoionization cross-section for the propargyl (C(3)H(3)) radical, σ(propargyl) (ion)(E), relative to the known absolute cross-section of the methyl (CH(3)) radical. We generated a stoichiometric 1:1 ratio of C(3)H(3):CH(3) from 193 nm photolysis of two different C(4)H(6) isomers (1-butyne and 1,3-butadiene). Photolysis of 1-butyne yielded values of σ(propargyl)(ion)(10.213 eV)=(26.1±4.2) Mb and σ(propargyl)(ion)(10.413 eV)=(23.4±3.2) Mb, whereas photolysis of 1,3-butadiene yielded values of σ(propargyl)(ion)(10.213 eV)=(23.6±3.6) Mb and σ(propargyl)(ion)(10.413 eV)=(25.1±3.5) Mb. These measurements place our relative photoionization cross-section spectrum for propargyl on an absolute scale between 8.6 and 10.5 eV. The cross-section derived from our results is approximately a factor of three larger than previous determinations.
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Affiliation(s)
- John D Savee
- Sandia National Laboratories, Combustion Research Facility, Livermore, California 94551, USA
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Hättig C, Klopper W, Köhn A, Tew DP. Explicitly Correlated Electrons in Molecules. Chem Rev 2011; 112:4-74. [DOI: 10.1021/cr200168z] [Citation(s) in RCA: 401] [Impact Index Per Article: 28.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Christof Hättig
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, D-44780 Bochum, Germany
| | - Wim Klopper
- Abteilung für Theoretische Chemie, Institut für Physikalische Chemie, Karlsruher Institut für Technologie, KIT-Campus Süd, Postfach 6980, D-76049 Karlsruhe, Germany
| | - Andreas Köhn
- Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany
| | - David P. Tew
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
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Lau KC, Ng CY. Note: Accurate ab initio predictions of ionization energies of propargyl and allyl radicals: Revisited. J Chem Phys 2011; 135:246101. [DOI: 10.1063/1.3673443] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Gao H, Xu Y, Yang L, Lam CS, Wang H, Zhou J, Ng CY. High-resolution threshold photoelectron study of the propargyl radical by the vacuum ultraviolet laser velocity-map imaging method. J Chem Phys 2011; 135:224304. [DOI: 10.1063/1.3664864] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Huang X, Taylor PR, Lee TJ. Highly Accurate Quartic Force Fields, Vibrational Frequencies, and Spectroscopic Constants for Cyclic and Linear C3H3+. J Phys Chem A 2011; 115:5005-16. [DOI: 10.1021/jp2019704] [Citation(s) in RCA: 122] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 100, Mountain View, California 94043, United States
| | - Peter R. Taylor
- Victorian Life Sciences Computation Initiative and Department of Chemistry, University of Melbourne, Victoria 3010, Australia
| | - Timothy J. Lee
- NASA Ames Research Center, Moffett Field, California 94035-1000, United States
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Hemberger P, Lang M, Noller B, Fischer I, Alcaraz C, Cunha de Miranda BK, Garcia GA, Soldi-Lose H. Photoionization of Propargyl and Bromopropargyl Radicals: A Threshold Photoelectron Spectroscopic Study. J Phys Chem A 2011; 115:2225-30. [DOI: 10.1021/jp112110j] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Patrick Hemberger
- Institute of Physical and Theoretical Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Melanie Lang
- Institute of Physical and Theoretical Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Bastian Noller
- Institute of Physical and Theoretical Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Ingo Fischer
- Institute of Physical and Theoretical Chemistry, University of Würzburg, Am Hubland, D-97074 Würzburg, Germany
| | - Christian Alcaraz
- Laboratoire de Chimie-Physique, UMR 8000 CNRS & Université Paris-Sud 11, F-91405 Orsay Cedex, France
| | - Bárbara K. Cunha de Miranda
- Laboratoire de Chimie-Physique, UMR 8000 CNRS & Université Paris-Sud 11, F-91405 Orsay Cedex, France
- Laboratório de Espectroscopia e Laser, Instituto de Física, Universidade Federal Fluminense, 24210- 340, Niterói, RJ, Brazil
| | - Gustavo A. Garcia
- Synchrotron SOLEIL, L’Orme des Merisiers, Saint Aubin - BP 48, F-91192 Gif-sur-Yvette Cedex, France
| | - Héloïse Soldi-Lose
- Synchrotron SOLEIL, L’Orme des Merisiers, Saint Aubin - BP 48, F-91192 Gif-sur-Yvette Cedex, France
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Botschwina P, Oswald R. On the equilibrium structures of the complexes H2C3H+·Ar and c-C3H3+·Ar: Results of explicitly correlated coupled cluster calculations. J Chem Phys 2011; 134:044305. [DOI: 10.1063/1.3525466] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Botschwina P, Oswald R, Rauhut G. Explicitly correlated coupled cluster calculations for the propargyl cation (H2C3H+) and related species. Phys Chem Chem Phys 2011; 13:7921-9. [DOI: 10.1039/c1cp20206e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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