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Tomazin R, Cerar Kišek T, Janko T, Triglav T, Strašek Smrdel K, Cvitković Špik V, Kukec A, Mulec J, Matos T. Comparison of Culture-Dependent and Culture-Independent Methods for Routine Identification of Airborne Microorganisms in Speleotherapeutic Caves. Microorganisms 2024; 12:1427. [PMID: 39065195 PMCID: PMC11278542 DOI: 10.3390/microorganisms12071427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 07/10/2024] [Accepted: 07/12/2024] [Indexed: 07/28/2024] Open
Abstract
The effective identification of bacterial and fungal isolates is essential for microbiological monitoring in environments like speleotherapeutic caves. This study compares MALDI-TOF MS and the OmniLog ID System, two high-throughput culture-based identification methods. MALDI-TOF MS identified 80.0% of bacterial isolates to the species level, while the OmniLog ID System identified 92.9%. However, species-level matches between the methods were only 48.8%, revealing considerable discrepancies. For discrepant results, MALDI-TOF MS matched molecular identification at the genus level in 90.5% of cases, while the OmniLog ID System matched only in 28.6%, demonstrating MALDI-TOF MS's superiority. The OmniLog ID System had difficulties identifying genera from the order Micrococcales. Fungal identification success with MALDI-TOF MS was 30.6% at the species level, potentially improvable with a customised spectral library, compared to the OmniLog ID System's 16.7%. Metagenomic approaches detected around 100 times more microbial taxa than culture-based methods, highlighting human-associated microorganisms, especially Staphylococcus spp. In addition to Staphylococcus spp. and Micrococcus spp. as indicators of cave anthropisation, metagenomics revealed another indicator, Cutibacterium acnes. This study advocates a multi-method approach combining MALDI-TOF MS, the OmniLog ID System, culture-based, and metagenomic analyses for comprehensive microbial identification. Metagenomic sampling on nitrocellulose filters provided superior read quality and microbial representation over liquid sampling, making it preferable for cave air sample collection.
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Affiliation(s)
- Rok Tomazin
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (T.T.); (K.S.S.); (V.C.Š.)
| | - Tjaša Cerar Kišek
- National Laboratory for Health, Environment and Food, Department for Public Health Microbiology, Grablovičeva Ulica 44, SI-1000 Ljubljana, Slovenia; (T.C.K.); (T.J.)
| | - Tea Janko
- National Laboratory for Health, Environment and Food, Department for Public Health Microbiology, Grablovičeva Ulica 44, SI-1000 Ljubljana, Slovenia; (T.C.K.); (T.J.)
| | - Tina Triglav
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (T.T.); (K.S.S.); (V.C.Š.)
| | - Katja Strašek Smrdel
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (T.T.); (K.S.S.); (V.C.Š.)
| | - Vesna Cvitković Špik
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (T.T.); (K.S.S.); (V.C.Š.)
| | - Andreja Kukec
- Department of Public Health, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia;
| | - Janez Mulec
- Karst Research Institute, Research Centre of the Slovenian Academy of Sciences and Arts, Titov Trg 2, SI-6230 Postojna, Slovenia;
- UNESCO Chair on Karst Education, University of Nova Gorica, SI-5271 Vipava, Slovenia
| | - Tadeja Matos
- Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Zaloška Cesta 4, SI-1000 Ljubljana, Slovenia; (R.T.); (T.T.); (K.S.S.); (V.C.Š.)
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2
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El-Liethy MA, Hemdan BA, El-Taweel GE. New insights for tracking bacterial community structures in industrial wastewater from textile factories to surface water using phenotypic, 16S rRNA isolates identifications and high-throughput sequencing. Acta Trop 2023; 238:106806. [PMID: 36574894 DOI: 10.1016/j.actatropica.2022.106806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 11/13/2022] [Accepted: 12/24/2022] [Indexed: 12/26/2022]
Abstract
Industrial wastewater can possibly change the microbial ecological environment. There are few studies that focus on the bacterial variety in textile wastewater effluents and after combination with domestic wastewater. Thus, this study aimed to determine dye degrading bacteria from textile wastewater and environmental water samples using cultural method followed by phenotypic using BIOLOG and genotypic identification (16S rRNA) for dye degrading isolates identifications. Moreover, the bacterial communities in three textile and four environmental samples using Illumina MiSeq high-throughput sequencing were investigated. The findings revealed that in textile water samples, the ratio of dye-degrading bacteria (DDB) to total bacterial counts (TBC) was 27%. The identified DDB genera by 16S rRNA based on the cultural approach were Citrobacter spp., Klebsiella spp., Enterobacter spp., Pseudomonas spp., and Aeromonas spp. Regarding to the metagenomics analyses, the environmental samples had 5,598 Operational Toxanomic Units (OTUs) more than textile wastewater samples (1,463 OTUs). Additionally, the most abundant phyla in the textile wastewater were Proteobacteria (24.45-94.83%), Bacteriodetes (0.5-44.84%) and Firmicutes (3.72-67.40%), while, Proteobacteria (30.8-76.3%), bacteroidetes (8.5-50%) and Acentobacteria (0.5-23.12%) were the most abundant phyla in the environmental samples. The maximum abundant bacteria at species level in environmental samples were Aquabacterium parvum (36.71%), Delftia tsuruhatensis (17.61%), Parabacteriodes chartae (15.39%) and Methylorubrum populi (7.51%) in El-Rahawy Drain water (RDW), River Nile water (RNW), wastewater (RWW) from WWTP in Zennin and El-Rahawy Drain sediment (RDS), respectively, whereas the maximum abundant bacteria at species level in textile wastewater were Alkalibacterium pelagium (34.11%), Enterobacter kobei (26.09%) and Chryseobacterium montanum (16.93%) in factory 1 (HBT) sample, SHB sample (before mixing with domestic wastewater) and SHB sample (after mixing with domestic wastewater), respectively. In conclusion, the microbial communities in textile wastewaters are similar to those in environmental samples at the phylum level but distinct at the genus and species levels because they are exposed to a wider range of environmental circumstances.
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Affiliation(s)
- Mohamed Azab El-Liethy
- Environmental Microbiology Laboratory, Water Pollution Research Department, National Research Centre, Dokki, Giza 12622, Egypt.
| | - Bahaa A Hemdan
- Environmental Microbiology Laboratory, Water Pollution Research Department, National Research Centre, Dokki, Giza 12622, Egypt
| | - Gamila E El-Taweel
- Environmental Microbiology Laboratory, Water Pollution Research Department, National Research Centre, Dokki, Giza 12622, Egypt
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3
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Artigas Ramírez MD, Agake SI, Maeda M, Kojima K, Ohkama-Ohtsu N, Yokoyama T. Diversity of Fast-Growth Spore-Forming Microbes and Their Activity as Plant Partners. Microorganisms 2023; 11:microorganisms11020232. [PMID: 36838197 PMCID: PMC9961442 DOI: 10.3390/microorganisms11020232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 01/15/2023] [Accepted: 01/16/2023] [Indexed: 01/18/2023] Open
Abstract
Biofertilizers are agricultural materials capable of reducing the usage amounts of chemical fertilizers. Spore-forming microorganisms (SFM) could be used for plant growth promotion or to improve plant health. Until now, biofertilizers based on SFM have been applied for rice and other crops. In this study, we isolated and characterized SFM, which were colonized on the Oryza sativa L. roots. SFM were analyzed regarding the short-term effects of biofertilization on the nursery growths. Analysis was performed without nitrogen or any inorganic fertilizer and was divided into two groups, including bacteria and fungi. SF-bacteria were dominated by the Firmicutes group, including species from Viridibacillus, Lysinibacillus, Solibacillus, Paenibacillus, Priestia, and mainly Bacillus (50%). The fungi group was classified as Mucoromycota, Basidiomycota, and mainly Ascomycota (80%), with a predominance of Penicillium and Trichoderma species. In plant performance in comparison with B. pumilus TUAT1, some bacteria and fungus isolates significantly improved the early growth of rice, based on 48 h inoculum with 107 CFU mL-1. Furthermore, several SFM showed positive physiological responses under abiotic stress or with limited nutrients such as phosphorous (P). Moreover, the metabolic fingerprint was obtained. The biofertilizer based on SFM could significantly reduce the application of the inorganic fertilizer and improve the lodging resistances of rice, interactively enhancing better plant health and crop production.
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Affiliation(s)
- María Daniela Artigas Ramírez
- Iriomote Station, Tropical Biosphere Research Center, University of the Ryukyus, 870 Uehara, Yaeyama, Taketomi, Okinawa 907-1541, Japan
- Institute of Global Innovation Research, Tokyo University of Agriculture and Technology (TUAT), Saiwai-cho 3-5-8, Fuchu, Tokyo 183-8538, Japan
| | - Shin-ichiro Agake
- Institute of Global Innovation Research, Tokyo University of Agriculture and Technology (TUAT), Saiwai-cho 3-5-8, Fuchu, Tokyo 183-8538, Japan
| | - Masumi Maeda
- Institute of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Harumi-cho 3-8-8, Fuchu, Tokyo 183-8538, Japan
| | - Katsuhiro Kojima
- Faculty of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Saiwai-cho 3-5-8, Fuchu, Tokyo 183-8538, Japan
| | - Naoko Ohkama-Ohtsu
- Institute of Global Innovation Research, Tokyo University of Agriculture and Technology (TUAT), Saiwai-cho 3-5-8, Fuchu, Tokyo 183-8538, Japan
- Institute of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Harumi-cho 3-8-8, Fuchu, Tokyo 183-8538, Japan
| | - Tadashi Yokoyama
- Institute of Agriculture, Tokyo University of Agriculture and Technology (TUAT), Harumi-cho 3-8-8, Fuchu, Tokyo 183-8538, Japan
- Faculty of Food and Agricultural Science, Fukushima University, Kanayagawa 1, Fukushima 960-1296, Japan
- Correspondence: ; Tel.: +81-24-548-8420
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The role of biofilm in the development and dissemination of ubiquitous pathogens in drinking water distribution systems: an overview of surveillance, outbreaks, and prevention. World J Microbiol Biotechnol 2021; 37:36. [PMID: 33507414 DOI: 10.1007/s11274-021-03008-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Accepted: 01/19/2021] [Indexed: 12/30/2022]
Abstract
A variety of pathogenic microorganisms can survive in the drinking water distribution systems (DWDS) by forming stable biofilms and, thus, continually disseminating their population through the system's dynamic water bodies. The ingestion of the pathogen-contaminated water could trigger a broad spectrum of illnesses and well-being-related obstacles. These waterborne diseases are a significant concern for babies, pregnant women, and significantly low-immune individuals. This review highlights the recent advances in understanding the microbiological aspects of drinking water quality, biofilm formation and its dynamics, health issues caused by the emerging microbes in biofilm, and approaches for biofilm investigation its prevention and suppression in DWDS.
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A Hemdan B, Azab El-Liethy M, El-Taweel GE. The destruction of Escherichia coli adhered to pipe surfaces in a model drinking water distribution system via various antibiofilm agents. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2020; 92:2155-2167. [PMID: 32621531 DOI: 10.1002/wer.1388] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 06/24/2020] [Accepted: 06/26/2020] [Indexed: 05/06/2023]
Abstract
The aim of the study is to estimate the effectiveness of three antibiofilm agents against Escherichia coli biofilm that formed in six different types of pipelines. A laboratory-scale water system was built for this work to allow for the creation of biofilm in the pipelines studied. The level of the growth rate of E. coli biofilm cells was monitored over 90 days on those tested pipe materials. The results of bacterial cell densities displayed that the highest biofilm growth was observed in the biofilm formed on the iron (Fe) pipe. In contrast, the biofilm formation rate was significantly lower on copper (Cu) pipe compared to other materials. Three antibiofilm agents, including chlorine, silver ions (Ag+ ), and silver nanoparticles (AgNPs), were employed to eradicate the biofilm cells. E. coli counts indicated that AgNPs are more efficient in destructing any formed biofilm cells on all tested materials. At the same time, the chlorine was only useful in the case of biofilm developed on plastic and Cu. However, the antibiofilm efficiency of Ag+ performs similarly to chlorine against E. coli biofilm cells. Ultimately, AgNPs are considred the most powerful antibiofilm agent among the other agents toward the biofilm cells in their maturation stage, which offers an encouraging way for the long-term functioning of water systems. PRACTITIONER POINTS: The growth rate of E. coli biofilm cells was investigated on different materials. The count of biofilm cells developed on iron pipes was higher than other materials. The E. coli biofilm on iron pipe could resist chlorine and AgNPs to a large extent. The developed biofilm on copper pipe was more sensitive to chlorine, Ag+ . and AgNPs. The biofilm cells could be easily eradicated from plastic-based materials with all tested disinfectants.
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Affiliation(s)
- Bahaa A Hemdan
- Water Pollution Research Department, National Research Centre, Giza, Egypt
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Assam, India
| | | | - Gamila E El-Taweel
- Water Pollution Research Department, National Research Centre, Giza, Egypt
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6
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ARTP mutation and adaptive laboratory evolution improve probiotic performance of Bacillus coagulans. Appl Microbiol Biotechnol 2020; 104:6363-6373. [DOI: 10.1007/s00253-020-10703-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 04/28/2020] [Accepted: 05/24/2020] [Indexed: 12/19/2022]
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El‐Liethy MA, Hemdan BA, El‐Taweel GE. Prevalence of
E. coli
,
Salmonella
, and
Listeria
spp. as potential pathogens: A comparative study for biofilm of sink drain environment. J Food Saf 2020. [DOI: 10.1111/jfs.12816] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Mohamed Azab El‐Liethy
- Environmental Microbiology Laboratory, Water Pollution Research DepartmentNational Research Centre Giza Egypt
| | - Bahaa A. Hemdan
- Environmental Microbiology Laboratory, Water Pollution Research DepartmentNational Research Centre Giza Egypt
| | - Gamila E. El‐Taweel
- Environmental Microbiology Laboratory, Water Pollution Research DepartmentNational Research Centre Giza Egypt
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8
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Ibrahim S, Azab El-Liethy M, Abia ALK, Abdel-Gabbar M, Mahmoud Al Zanaty A, Mohamed Kamel M. Design of a bioaugmented multistage biofilter for accelerated municipal wastewater treatment and deactivation of pathogenic microorganisms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 703:134786. [PMID: 31731155 DOI: 10.1016/j.scitotenv.2019.134786] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Revised: 09/02/2019] [Accepted: 10/01/2019] [Indexed: 06/10/2023]
Abstract
Biological treatment of municipal wastewater for reuse in irrigation is highly required, especially with the current global financial and water shortage crises. Bioaugmentation is a simple and cost-effective technology which could be a useful tool in alleviating this challenge. Thus, this study aimed to enhance the biological treatment of municipal wastewater using a bioaugmented substance supplemented in a three-stages bio-filter consisting of a sedimentation step followed by gravel biofiltration and then sand biofiltration at a laboratory scale. Also, a toxicity assay, the antimicrobial effect of the bioaugmented substance against pathogenic microorganisms, and identification of the synergistic effect of the bacterial consortium involved in the bioaugmented substance were studied. The bioaugmented substance was nontoxic and had an antimicrobial effect against the tested potentially pathogenic microorganisms (Escherichia coli, Pseudomonas aeruginosa, Listeria monocytogenes, Staphylococcus aureus, and Candida albicans). The minimum effective concentration of the bioaugmented substance for organic, inorganic and microbial pollutants removal from high strength wastewater was 2.5 ppm with a contact time of 6-8 h. The removal efficiencies of H2S, COD, BOD5, total solids (TS), total dissolved solids, total suspended solids, ammonia, nitrate, phosphorus, and oil and grease reached 85, 93.4, 83.5, 37, 49.2, 93.4, 100, 55.7, 76.6 and 76.6%, respectively in the treated effluent after sand biofiltration. The physicochemical parameters of the treated wastewater effluent were below the Egyptian recommended limits (Law 84/1984) for use in irrigation. However, COD and BOD values were 90.33 and 38.46 mgO2/L, respectively, and were still above the regulations (COD ≤60 and BOD ≤20). The high fecal coliforms count in the wastewater influent (8.4 × 108 MPN-index/100 mL) were 95.1% removed after the sedimentation stage, and 99.99% removal was achieved after gravel and sand biofiltration. Thus, this study successfully designed a bioaugmented multistage biofiltration system for the effective removal of pollutants from wastewater, especially in resource-limited areas.
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Affiliation(s)
- Salma Ibrahim
- Water and Wastewater Company, Fayoum Governorate, Egypt
| | - Mohamed Azab El-Liethy
- Environmental Microbiology Lab., Water Pollution Research Department, National Research Centre, Dokki, Giza 12622, Egypt.
| | - Akebe Luther King Abia
- Antimicrobial Research Unit, College of Health Sciences, University of KwaZulu-Natal, X54001 Durban, South Africa.
| | - Mohammed Abdel-Gabbar
- Biochemistry Department, Faculty of Science, Beni-Suef University, BeniSuef Governorate, Egypt
| | - Ali Mahmoud Al Zanaty
- Biochemistry Department, Faculty of Science, Beni-Suef University, BeniSuef Governorate, Egypt
| | - Mohamed Mohamed Kamel
- Environmental Microbiology Lab., Water Pollution Research Department, National Research Centre, Dokki, Giza 12622, Egypt
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Zhu M, He Y, Li Y, Ren T, Liu H, Huang J, Jiang D, Hsiang T, Zheng L. Two New Biocontrol Agents Against Clubroot Caused by Plasmodiophora brassicae. Front Microbiol 2020; 10:3099. [PMID: 32038545 PMCID: PMC6986203 DOI: 10.3389/fmicb.2019.03099] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 12/20/2019] [Indexed: 01/26/2023] Open
Abstract
Clubroot disease caused by Plasmodiophora brassicae can lead to serious yield losses in crucifers such as Brassica napus. In this study, 323 bacterial strains were isolated from the rhizosphere of severely diseased B. napus in Dangyang county, Hubei province, China. Antagonistic strains were first identified based on dual culture inhibition zones with Fusarium oxysporum and Magnaporthe oryzae. These were then further screened in germination inhibition and viability assays of resting spores of P. brassicae. Finally, eight of the antagonistic strains were found to significantly reduce the disease severity of clubroot by more than 40% under greenhouse conditions, and two strains, F85 and T113, were found to have efficacy of more than 80%. Root hair infection experiments showed that F85 and T113 can inhibit early infection of root hairs, reduce the differentiation of primary plasmodia of P. brassicae, and inhibit formation of secondary zoosporangia. Based on sequence analysis of 16S rDNA gene, gyrA gene and 22 housekeeping genes as well as carbon source utilization analysis, the F85 was identified as Bacillus velezensis and T113 as Bacillus amyloliquefaciens. Genome analysis, PCR and RT-PCR detection revealed that both F85 and T113 harbor various antibiotic biosynthesis gene clusters required to form peptides with antimicrobial activity. To our knowledge, this is the first report of B. velezensis as a biocontrol agent against clubroot disease.
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Affiliation(s)
- Manli Zhu
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Youwei He
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Yi Li
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Tirong Ren
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Hao Liu
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Junbin Huang
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Daohong Jiang
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Tom Hsiang
- School of Environmental Sciences, University of Guelph, Guelph, ON, Canada
| | - Lu Zheng
- The Key Lab of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
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Hemdan BA, El-Liethy MA, ElMahdy MEI, El-Taweel GE. Metagenomics analysis of bacterial structure communities within natural biofilm. Heliyon 2019; 5:e02271. [PMID: 31485510 PMCID: PMC6716113 DOI: 10.1016/j.heliyon.2019.e02271] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 07/11/2019] [Accepted: 08/06/2019] [Indexed: 12/21/2022] Open
Abstract
The bacterial profiles of natural household biofilm have not been widely investigated. The majorities of these bacterial lineages are not cultivable. Thus, this study aims (i) to enumerate some potential bacterial lineages using culture based method within biofilm samples and confirmed using Biolog GEN III and polymerase chain reaction (PCR). (ii) To investigate the bacterial profiles of communities in two biofilm samples using next generation sequencing (NGS). Forty biofilm samples were cultured and colonies of each selected prevailing potential lineages (E. coli, Salmonella entrica, Pseudomonas aeruginosa, Staphylococcus aureus and Listeria monocytogenes) were selected for confirmation. From obtained results, the counts of the tested bacterial lineages in kitchen biofilm samples were greater than those in bathroom samples. Precision of PCR was higher than Biolog GEN III to confirm the bacterial isolates. Using NGS analysis, the results revealed that a total of 110,554 operational taxonomic units (OTUs) were obtained for two biofilm samples, representing kitchen and bathroom biofilm samples. The numbers of phyla in the kitchen biofilm sample (35 OTUs) was higher than that in bathroom sample (18 OTUs). A total of 435 genera were observed in the bathroom biofilm sample compared to only 256 in the kitchen sample. Evidences have shown that the empirical gadgets for biofilm investigation are becoming convenient and affordable. Many distinct bacterial lineages observed in biofilm are one of the most significant issues that threaten human health and lead to disease outbreaks.
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Affiliation(s)
- Bahaa A Hemdan
- Environmental Microbiology Lab., Water Pollution Research Department, National Research Centre, Dokki, 12622, Giza, Egypt
| | - Mohamed Azab El-Liethy
- Environmental Microbiology Lab., Water Pollution Research Department, National Research Centre, Dokki, 12622, Giza, Egypt
| | - M E I ElMahdy
- Environmental Virology Lab., Water Pollution Research Department, National Research Centre, Dokki, Giza, 12622, Egypt
| | - Gamila E El-Taweel
- Environmental Microbiology Lab., Water Pollution Research Department, National Research Centre, Dokki, 12622, Giza, Egypt
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