1
|
Ball EH, Basilone NT. Filter paper disks as a matrix for manipulation of recombinant proteins. Anal Biochem 2022; 655:114841. [PMID: 35961400 DOI: 10.1016/j.ab.2022.114841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/19/2022] [Accepted: 07/29/2022] [Indexed: 11/16/2022]
Abstract
Filter paper provides an excellent matrix for retention of proteins containing a cellulose binding domain. To use this capability for manipulating recombinant fusion proteins, binding and elution parameters were explored and procedures developed for small scale purification, modification and assay. Proteins were tagged with the cellulose binding domain from the Clostridium thermocellum CipB gene via a cleavable linker. Filter paper disks of 6 mm diameter were able to bind up to 80 μg protein although there was a substantial dependence on molecular size. Different means of introducing fusion proteins to the disks allow either binding within 20 min from microliter volumes or slower binding from milliliter volumes. Elution with protease in small volumes yielded greater than 10 μg amounts with concentrations in the 1-2 mg/ml range. To demonstrate their utility, disks were used for small scale protein purification, covalent modification of protein, immunoprecipitation, and in a binding assay. These versatile methods allow parallel processing of multiple samples and may find many uses when only small amounts of protein are needed.
Collapse
Affiliation(s)
- Eric H Ball
- Department of Biochemistry, University of Western Ontario London, Ontario, N6G 3C3, Canada.
| | - Nicoletta T Basilone
- Department of Biochemistry, University of Western Ontario London, Ontario, N6G 3C3, Canada
| |
Collapse
|
2
|
Lin Q, Li J, Ling X, Zhang X. Cloning and expression of a novel <i>trans</i>-anethole oxygenase gene from <i>Paraburkholderia</i> sp. MR185. J GEN APPL MICROBIOL 2022; 68:163-167. [DOI: 10.2323/jgam.2021.10.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Qian Lin
- College of Biology and Pharmacy, Yulin Normal University
| | - Jieni Li
- College of Biology and Pharmacy, Yulin Normal University
| | - Xinru Ling
- College of Biology and Pharmacy, Yulin Normal University
| | - Xinmei Zhang
- College of Biology and Pharmacy, Yulin Normal University
| |
Collapse
|
3
|
Bayar E, Ren Y, Chen Y, Hu Y, Zhang S, Yu X, Fan J. Construction, Investigation and Application of TEV Protease Variants with Improved Oxidative Stability. J Microbiol Biotechnol 2021; 31:1732-1740. [PMID: 34528919 PMCID: PMC9705859 DOI: 10.4014/jmb.2106.06075] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 09/06/2021] [Accepted: 09/08/2021] [Indexed: 12/15/2022]
Abstract
Tobacco etch virus protease (TEVp) is a useful tool for removing fusion tags, but wild-type TEVp is less stable under oxidized redox state. In this work, we introduced and combined C19S, C110S and C130S into TEVp variants containing T17S, L56V, N68D, I77V and S135G to improve protein solubility, and S219V to inhibit self-proteolysis. The solubility and cleavage activity of the constructed variants in Escherichia coli strains including BL21(DE3), BL21(DE3)pLys, Rossetta(DE3) and Origami(DE3) under the same induction conditions were analyzed and compared. The desirable soluble amounts, activity, and oxidative stability were identified to be reluctantly favored in the TEVp. Unlike C19S, C110S and C130S hardly impacted on decreasing protein solubility in the BL21(DE3), but they contributed to improved tolerance to the oxidative redox state in vivo and in vitro. After two fusion proteins were cleaved by purified TEVp protein containing double mutations under the oxidized redox state, the refolded disulfide-rich bovine enterokinase catalytic domain or maize peroxidase with enhanced yields were released from the regenerated amorphous cellulose via affinity absorption of the cellulose-binding module as the affinity tag.
Collapse
Affiliation(s)
- Enkhtuya Bayar
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Yuanyuan Ren
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Yinghua Chen
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Yafang Hu
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Shuncheng Zhang
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Xuelian Yu
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China
| | - Jun Fan
- School of Life Science, Anhui Agricultural University, Hefei, Anhui 230036, P.R. China,Corresponding author Phone : +86-551-65786464 Fax : +86-551-65786021 E-mail:
| |
Collapse
|
4
|
Pelus A, Bordes G, Barbe S, Bouchiba Y, Burnard C, Cortés J, Enjalbert B, Esque J, Estaña A, Fauré R, Henras AK, Heux S, Le Men C, Millard P, Nouaille S, Pérochon J, Toanen M, Truan G, Verdier A, Wagner C, Romeo Y, Montanier CY. A tripartite carbohydrate-binding module to functionalize cellulose nanocrystals. Biomater Sci 2021; 9:7444-7455. [PMID: 34647546 DOI: 10.1039/d1bm01156a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The development of protein and microorganism engineering have led to rising expectations of biotechnology in the design of emerging biomaterials, putatively of high interest to reduce our dependence on fossil carbon resources. In this way, cellulose, a renewable carbon based polysaccharide and derived products, displays unique properties used in many industrial applications. Although the functionalization of cellulose is common, it is however limited in terms of number and type of functions. In this work, a Carbohydrate-Binding Module (CBM) was used as a central core to provide a versatile strategy to bring a large diversity of functions to cellulose surfaces. CBM3a from Clostridium thermocellum, which has a high affinity for crystalline cellulose, was flanked through linkers with a streptavidin domain and an azide group introduced through a non-canonical amino acid. Each of these two extra domains was effectively produced and functionalized with a variety of biological and chemical molecules. Structural properties of the resulting tripartite chimeric protein were investigated using molecular modelling approaches, and its potential for the multi-functionalization of cellulose was confirmed experimentally. As a proof of concept, we show that cellulose can be labelled with a fluorescent version of the tripartite protein grafted to magnetic beads and captured using a magnet.
Collapse
Affiliation(s)
- Angeline Pelus
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Gaëlle Bordes
- Molecular, Cellular and Developmental biology department (MCD), Centre de Biologie Integrative (CBI), Université de Toulouse, CNRS, UPS, 31062 Toulouse, France.
| | - Sophie Barbe
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Younes Bouchiba
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Callum Burnard
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Juan Cortés
- LAAS-CNRS, Université de Toulouse, CNRS, Toulouse, France
| | - Brice Enjalbert
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Jeremy Esque
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | | | - Régis Fauré
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Anthony K Henras
- Molecular, Cellular and Developmental biology department (MCD), Centre de Biologie Integrative (CBI), Université de Toulouse, CNRS, UPS, 31062 Toulouse, France.
| | - Stéphanie Heux
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Claude Le Men
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Pierre Millard
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | | | - Julien Pérochon
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Marion Toanen
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Gilles Truan
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Amandine Verdier
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Camille Wagner
- TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.
| | - Yves Romeo
- Molecular, Cellular and Developmental biology department (MCD), Centre de Biologie Integrative (CBI), Université de Toulouse, CNRS, UPS, 31062 Toulouse, France.
| | | |
Collapse
|
5
|
Construction of a Novel Chimeric Dextransucrase Fused to the Carbohydrate-Binding Module CBM2a. Catalysts 2021. [DOI: 10.3390/catal11101179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Lactic acid bacteria (LAB) have the potential to produce homoexopolysaccharides (HoPS). Their health benefits and physicochemical properties have been the subject of extensive research. The HoPS functional properties are determined by molecular weight, the type of glycosidic linkages, degrees of branching and chemical composition. The dextransucrases (DSases) produce a kind of HoPS (dextrans), which are among the first biopolymers produced at industrial scale with applications in medicine and biotechnology. The glycodiversification opens additional applications for DSases. Therefore, the design and characterization of new DSases is of prime importance. Previously, we described the isolation and characterization of a novel extracellular dextransucrase (DSR-F) encoding gene. In this study, from DSR-F, we design a novel chimeric dextransucrase DSR-F-∆SP-∆GBD-CBM2a, where DSR-F-∆SP-∆GBD (APY repeats and a CW repeat deleted) was fused to the carbohydrate-binding module (CBM2a) of the β-1-4 exoglucanase/xylanase Cex (Xyn10A) of Cellulomonas fimi ATCC 484. This dextransucrase variant is active and the specificity is not altered. The DSR-F-∆SP-∆GBD-CBM2a was purified by cellulose affinity chromatography for the first time. This research showed that hybrids and chimeric biocatalyst DSases with novel binding capacity to cellulose can be designed to purify and immobilize using renewable lignocellulosic materials as supports.
Collapse
|
6
|
Bhadra S, Nguyen V, Torres JA, Kar S, Fadanka S, Gandini C, Akligoh H, Paik I, Maranhao AC, Molloy J, Ellington AD. Producing molecular biology reagents without purification. PLoS One 2021; 16:e0252507. [PMID: 34061896 PMCID: PMC8168896 DOI: 10.1371/journal.pone.0252507] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/17/2021] [Indexed: 11/18/2022] Open
Abstract
We recently developed 'cellular' reagents-lyophilized bacteria overexpressing proteins of interest-that can replace commercial pure enzymes in typical diagnostic and molecular biology reactions. To make cellular reagent technology widely accessible and amenable to local production with minimal instrumentation, we now report a significantly simplified method for preparing cellular reagents that requires only a common bacterial incubator to grow and subsequently dry enzyme-expressing bacteria at 37°C with the aid of inexpensive chemical desiccants. We demonstrate application of such dried cellular reagents in common molecular and synthetic biology processes, such as PCR, qPCR, reverse transcription, isothermal amplification, and Golden Gate DNA assembly, in building easy-to-use testing kits, and in rapid reagent production for meeting extraordinary diagnostic demands such as those being faced in the ongoing SARS-CoV-2 pandemic. Furthermore, we demonstrate feasibility of local production by successfully implementing this minimized procedure and preparing cellular reagents in several countries, including the United Kingdom, Cameroon, and Ghana. Our results demonstrate possibilities for readily scalable local and distributed reagent production, and further instantiate the opportunities available via synthetic biology in general.
Collapse
Affiliation(s)
- Sanchita Bhadra
- Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas, United States of America
- Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Vylan Nguyen
- Freshman Research Initiative, DIY Diagnostics Stream, The University of Texas at Austin, Austin, Texas, United States of America
| | - Jose-Angel Torres
- Freshman Research Initiative, DIY Diagnostics Stream, The University of Texas at Austin, Austin, Texas, United States of America
| | - Shaunak Kar
- Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas, United States of America
- Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | | | - Chiara Gandini
- Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom
| | | | - Inyup Paik
- Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas, United States of America
- Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Andre C. Maranhao
- Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas, United States of America
- Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America
| | - Jenny Molloy
- Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom
| | - Andrew D. Ellington
- Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas, United States of America
- Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, United States of America
| |
Collapse
|
7
|
Rai K, Chu X, Zhou D, Li F, Yang J, Lin J, Shen S, Song H, Sun Y, Nian R. Development of a protein-solubilizing expression method based on the synergistic action of intein ΔI-CM and the solubility enhancer elastin-like polypeptide. Biochem Eng J 2021. [DOI: 10.1016/j.bej.2020.107900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
8
|
Bacterial production of maize and human serine racemases as partially active inclusion bodies for d-serine synthesis. Enzyme Microb Technol 2020; 137:109547. [DOI: 10.1016/j.enzmictec.2020.109547] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2019] [Revised: 03/01/2020] [Accepted: 03/04/2020] [Indexed: 01/31/2023]
|
9
|
Wang B, Luo L, Wang D, Ding R, Hong J. Efficient purification of a recombinant tag-free thermostable Kluyveromyces marxianus uricase by pH-induced self-cleavage of intein and expression in Escherichia coli. 3 Biotech 2018; 8:400. [PMID: 30221113 DOI: 10.1007/s13205-018-1422-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 09/01/2018] [Indexed: 11/25/2022] Open
Abstract
Uricase as an important healthcare-related protein is extensively used in the treatment of tumor lysis syndrome and in the manufacture of serum uric-acid diagnostic kits. In this study, a gene of a new thermostable uricase (KmUOX) was cloned from thermotolerant yeast Kluyveromyces marxianus. The uricase was fused with a self-cleaving intein and cellulose-binding affinity tag and expressed in Escherichia coli BL21 (DE3). Through the binding to inexpensive cellulose and in situ intein cleavage induced by a pH change, tag-free uricase (KmUOX) was efficiently purified with a 77.11% yield via a single-step column purification strategy. This tag-free uricase showed Km, Vmax, and Kcat values of 67.60 µM, 56.35 µM/(min mg), and 32.74 S-1, respectively. Furthermore, this pure uricase was relatively thermostable and retained 79.75% of activity when incubated at 40 °C for 90 h. Thus, this pH-induced self-cleavable intein system combined with a cellulose matrix for affinity chromatography is proven here to be an effective and low-cost method for recombinant-uricase purification. Moreover, the stability of KmUOX makes it useful for clinical applications.
Collapse
Affiliation(s)
- Bangchun Wang
- 1Institutes of Life Science, Anhui Medical University, No. 81 Mei Shan Road, Hefei, 230032 Anhui China
| | - Laipeng Luo
- 1Institutes of Life Science, Anhui Medical University, No. 81 Mei Shan Road, Hefei, 230032 Anhui China
| | - Dongmei Wang
- 2School of Life Science, University of Science and Technology of China, No. 96 Jinzhai Road, Hefei, 230036 Anhui China
| | - Rui Ding
- 1Institutes of Life Science, Anhui Medical University, No. 81 Mei Shan Road, Hefei, 230032 Anhui China
| | - Jiong Hong
- 2School of Life Science, University of Science and Technology of China, No. 96 Jinzhai Road, Hefei, 230036 Anhui China
| |
Collapse
|
10
|
A Simple Method for Beta-glucosidase Immobilization and Its Application in Soybean Isoflavone Glycosides Hydrolysis. BIOTECHNOL BIOPROC E 2018. [DOI: 10.1007/s12257-017-0434-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
11
|
Abstract
Cellulosic biomass is the most abundant biopolymer on the earth. It has great potential to quench the thirst of liquid energy by producing biofuels and thus help to mitigate human reliance on fossil fuels. Although several cellulase activity assay methods have been used to disintegrate the glycosidic bonds, the appropriate selection of substrates and synergistic involvement of multiple enzymes in hydrolytic activity is not yet fully understood. The proper quantification of hydrolytic enzymes and hydrolysates is challenging because of the heterogeneity of cellulose, changes in enzyme-substrate ratio and the presence of some inhibitory compounds like cellobiose and cellodextran. In the glycosyl hydrolase (GH) family, cellobiohydrolase (CBH) is expected to disrupt the crystalline cellulose and release the sugar molecules. Several methods have been proposed for CBH assay with slight modification in substrate and quantification of hydrolysates. However, the Avicel method is still considered as the most promising and efficient hydrolytic technique so far. The most commonly used CBH assays including Avicel and other recent methods for proper quantification are outlined in this chapter. Also a qualitative screening of CBH producing bacteria using carboxymethyl cellulose (CMC) agar plates is described.
Collapse
|
12
|
Li S, Shao N, Luo Y, Liu H, Cai S, Dong X. Transcriptome and Zymogram Analyses Reveal a Cellobiose-Dose Related Reciprocal Regulatory Effect on Cellulase Synthesis in Cellulosilyticum ruminicola H1. Front Microbiol 2017; 8:2497. [PMID: 29312203 PMCID: PMC5733062 DOI: 10.3389/fmicb.2017.02497] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 11/30/2017] [Indexed: 11/21/2022] Open
Abstract
The rumen bacterium Cellulosilyticum ruminicola H1 efficiently hydrolyzes cellulose. To gain insights into the regulatory mechanisms of cellulase synthesis, comparative transcriptome analysis was conducted for cultures grown on 2% filter paper, 0.5 and 0.05% cellobiose, and 0.5% birchwood xylan. It was found that cellulose induced a majority of (hemi)cellulases, including 33 cellulases and a cellulosomal scaffoldin (1.3- to 22.7-fold); seven endoxylanases, two mannanases, and two pectatelyases (2- to 16-fold); and pyruvate formate-lyase (PFL, 1.5- to 7-fold). Noticeably, 3- and 2.5-fold increased transcription of a cellobiohydrolase and the cellulosomal scaffoldin precursor were detected in 0.05% than in 0.5% cellobiose. Consistently, 9- and 4-fold higher specific cellobiohydrolase activities were detected in the filter paper and 0.05% cellobiose culture. SDS- and native-PAGE zymograms of cellulose-enriched proteins from the filter paper culture displayed cellulase activities, and cellulolytic “complexes” were enriched from the filter paper- and 0.05% cellobiose-cultures, but not from the 0.5% cellobiose culture. LC-MS/MS identified the cellulosomal scaffoldin precursor in the “complexes” in addition to cellulase, hemicellulase, and PFL proteins. The addition of 0.5% cellobiose, but not 0.05% cellobiose remarkably inhibited strain H1 to degrade filter paper. Therefore, this work reveals a cellobiose-dose related regulatory mechanism of cellulase synthesis by lower for induction and higher for repression, which has extended our understanding of the regulation of microbial cellulase synthesis.
Collapse
Affiliation(s)
- Shanzhen Li
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.,State Key Laboratory of Microbial Resources, University of Chinese Academy of Sciences, Beijing, China
| | - Nana Shao
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.,State Key Laboratory of Microbial Resources, University of Chinese Academy of Sciences, Beijing, China
| | - Yuanming Luo
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Hongcan Liu
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Shichun Cai
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Xiuzhu Dong
- State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
13
|
Valenzuela SV, Ferreres G, Margalef G, Pastor FJ. Fast purification method of functional LPMOs from Streptomyces ambofaciens by affinity adsorption. Carbohydr Res 2017; 448:205-211. [DOI: 10.1016/j.carres.2017.02.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2017] [Revised: 02/17/2017] [Accepted: 02/18/2017] [Indexed: 01/03/2023]
|
14
|
Yu X, Sun J, Wang W, Jiang L, Wang R, Xiao W, Cheng B, Fan J. Tobacco etch virus protease mediating cleavage of the cellulose-binding module tagged colored proteins immobilized on the regenerated amorphous cellulose. Bioprocess Biosyst Eng 2017; 40:1101-1110. [DOI: 10.1007/s00449-017-1772-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Accepted: 04/17/2017] [Indexed: 12/12/2022]
|
15
|
Zhu K, Zhou X, Yan Y, Mo H, Xie Y, Cheng B, Fan J. Cleavage of fusion proteins on the affinity resins using the TEV protease variant. Protein Expr Purif 2017; 131:27-33. [DOI: 10.1016/j.pep.2016.02.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 02/04/2016] [Accepted: 02/05/2016] [Indexed: 10/22/2022]
|
16
|
|
17
|
Fu Q, Wang X, Si Y, Liu L, Yu J, Ding B. Scalable Fabrication of Electrospun Nanofibrous Membranes Functionalized with Citric Acid for High-Performance Protein Adsorption. ACS APPLIED MATERIALS & INTERFACES 2016; 8:11819-29. [PMID: 27111287 DOI: 10.1021/acsami.6b03107] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Fabricating protein adsorbents with high adsorption capacity and appreciable throughput is extremely important and highly desired for the separation and purification of protein products in the biomedical and pharmaceutical industries, yet still remains a great challenge. Herein, we demonstrate the synthesis of a novel protein adsorbent by in situ functionalizing eletrospun ethylene-vinyl alcohol (EVOH) nanofibrous membranes (NFM) with critic acid (CCA). Taking advantage of the merits of large specific surface area, highly tortuous open-porous structure, abundant active carboxyl groups introduced by CCA, superior chemical stability, and robust mechanical strength, the obtained CCA-grafted EVOH NFM (EVOH-CCA NFM) present an excellent integrated protein (take lysozyme as the model protein) adsorption performance with a high capacity of 284 mg g(-1), short equilibrium time of 6 h, ease of elution, and good reusability. Meanwhile, the adsorption performance of EVOH-CCA NFM can be optimized by regulating buffer pH, ionic strength, and initial concentration of protein solutions. More importantly, a dynamic binding efficiency of 250 mg g(-1) can be achieved driven solely by the gravity of protein solution, which matches well with the demands of the high yield and energy conservation in the actual protein purification process. Furthermore, the resultant EVOH-CCA NFM also possess unique selectivity for positively charged proteins which was confirmed by the method of sodium dodecyl sulfate polyacrylamide gel electrophoresis. Significantly, the successful synthesis of such intriguing and economic EVOH-CCA NFM may provide a promising candidate for the next generation of protein adsorbents for rapid, massive, and cost-effective separation and purification of proteins.
Collapse
Affiliation(s)
- Qiuxia Fu
- Key Laboratory of Textile Science and Technology, Ministry of Education, College of Textiles, Donghua University , Shanghai 201620, China
| | - Xueqin Wang
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University , Shanghai 201620, China
| | - Yang Si
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University , Shanghai 201620, China
| | - Lifang Liu
- Key Laboratory of Textile Science and Technology, Ministry of Education, College of Textiles, Donghua University , Shanghai 201620, China
| | - Jianyong Yu
- Nanofibers Research Center, Modern Textile Institute, Donghua University , Shanghai 200051, China
| | - Bin Ding
- Key Laboratory of Textile Science and Technology, Ministry of Education, College of Textiles, Donghua University , Shanghai 201620, China
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering, Donghua University , Shanghai 201620, China
- Nanofibers Research Center, Modern Textile Institute, Donghua University , Shanghai 200051, China
| |
Collapse
|
18
|
A Novel Recombinant DNA System for High Efficiency Affinity Purification of Proteins in Saccharomyces cerevisiae. G3-GENES GENOMES GENETICS 2015; 6:573-8. [PMID: 26715090 DOI: 10.1534/g3.115.025106] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Isolation of endogenous proteins from Saccharomyces cerevisiae has been facilitated by inserting encoding polypeptide affinity tags at the C-termini of chromosomal open reading frames (ORFs) using homologous recombination of DNA fragments. Tagged protein isolation is limited by a number of factors, including high cost of affinity resins for bulk isolation and low concentration of ligands on the resin surface, leading to low isolation efficiencies and trapping of contaminants. To address this, we have created a recombinant "CelTag" DNA construct from which PCR fragments can be created to easily tag C-termini of S. cerevisiae ORFs using selection for a nat1 marker. The tag has a C-terminal cellulose binding module to be used in the first affinity step. Microgranular cellulose is very inexpensive and has an effectively continuous ligand on its surface, allowing rapid, highly efficient purification with minimal background. Cellulose-bound proteins are released by specific cleavage of an included site for TEV protease, giving nearly pure product. The tag can be lifted from the recombinant DNA construct either with or without a 13x myc epitope tag between the target ORF and the TEV protease site. Binding of CelTag protein fusions to cellulose is stable to high salt, nonionic detergents, and 1 M urea, allowing stringent washing conditions to remove loosely associated components, as needed, before specific elution. It is anticipated that this reagent could allow isolation of protein complexes from large quantities of yeast extract, including soluble, membrane-bound, or nucleic acid-associated assemblies.
Collapse
|
19
|
Bayram Akcapinar G, Venturini A, Martelli PL, Casadio R, Sezerman UO. Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches. Protein Eng Des Sel 2015; 28:127-35. [DOI: 10.1093/protein/gzv012] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2014] [Accepted: 02/04/2015] [Indexed: 11/12/2022] Open
|
20
|
Recombinant CBM-fusion technology - Applications overview. Biotechnol Adv 2015; 33:358-69. [PMID: 25689072 DOI: 10.1016/j.biotechadv.2015.02.006] [Citation(s) in RCA: 86] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Revised: 02/06/2015] [Accepted: 02/09/2015] [Indexed: 02/04/2023]
Abstract
Carbohydrate-binding modules (CBMs) are small components of several enzymes, which present an independent fold and function, and specific carbohydrate-binding activity. Their major function is to bind the enzyme to the substrate enhancing its catalytic activity, especially in the case of insoluble substrates. The immense diversity of CBMs, together with their unique properties, has long raised their attention for many biotechnological applications. Recombinant DNA technology has been used for cloning and characterizing new CBMs. In addition, it has been employed to improve the purity and availability of many CBMs, but mainly, to construct bi-functional CBM-fused proteins for specific applications. This review presents a comprehensive summary of the uses of CBMs recombinantly produced from heterologous organisms, or by the original host, along with the latest advances. Emphasis is given particularly to the applications of recombinant CBM-fusions in: (a) modification of fibers, (b) production, purification and immobilization of recombinant proteins, (c) functionalization of biomaterials and (d) development of microarrays and probes.
Collapse
|
21
|
Gao D, Haarmeyer C, Balan V, Whitehead TA, Dale BE, Chundawat SPS. Lignin triggers irreversible cellulase loss during pretreated lignocellulosic biomass saccharification. BIOTECHNOLOGY FOR BIOFUELS 2014; 7:175. [PMID: 25530803 PMCID: PMC4272552 DOI: 10.1186/s13068-014-0175-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Accepted: 11/27/2014] [Indexed: 05/02/2023]
Abstract
BACKGROUND Non-productive binding of enzymes to lignin is thought to impede the saccharification efficiency of pretreated lignocellulosic biomass to fermentable sugars. Due to a lack of suitable analytical techniques that track binding of individual enzymes within complex protein mixtures and the difficulty in distinguishing the contribution of productive (binding to specific glycans) versus non-productive (binding to lignin) binding of cellulases to lignocellulose, there is currently a poor understanding of individual enzyme adsorption to lignin during the time course of pretreated biomass saccharification. RESULTS In this study, we have utilized an FPLC (fast protein liquid chromatography)-based methodology to quantify free Trichoderma reesei cellulases (namely CBH I, CBH II, and EG I) concentration within a complex hydrolyzate mixture during the varying time course of biomass saccharification. Three pretreated corn stover (CS) samples were included in this study: Ammonia Fiber Expansion(a) (AFEX™-CS), dilute acid (DA-CS), and ionic liquid (IL-CS) pretreatments. The relative fraction of bound individual cellulases varied depending not only on the pretreated biomass type (and lignin abundance) but also on the type of cellulase. Acid pretreated biomass had the highest levels of non-recoverable cellulases, while ionic liquid pretreated biomass had the highest overall cellulase recovery. CBH II has the lowest thermal stability among the three T. reesei cellulases tested. By preparing recombinant family 1 carbohydrate binding module (CBM) fusion proteins, we have shown that family 1 CBMs are highly implicated in the non-productive binding of full-length T. reesei cellulases to lignin. CONCLUSIONS Our findings aid in further understanding the complex mechanisms of non-productive binding of cellulases to pretreated lignocellulosic biomass. Developing optimized pretreatment processes with reduced or modified lignin content to minimize non-productive enzyme binding or engineering pretreatment-specific, low-lignin binding cellulases will improve enzyme specific activity, facilitate enzyme recycling, and thereby permit production of cheaper biofuels.
Collapse
Affiliation(s)
- Dahai Gao
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
- />Great Lakes Bioenergy Research Center (GLBRC), Michigan State University, 164 Food Safety and Toxicology Building, East Lansing, MI 48824 USA
- />Biomass Conversion Research Lab (BCRL), MBI Building, 3900 Collins Road, East Lansing, MI 48910 USA
| | - Carolyn Haarmeyer
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
| | - Venkatesh Balan
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
- />Great Lakes Bioenergy Research Center (GLBRC), Michigan State University, 164 Food Safety and Toxicology Building, East Lansing, MI 48824 USA
- />Biomass Conversion Research Lab (BCRL), MBI Building, 3900 Collins Road, East Lansing, MI 48910 USA
| | - Timothy A Whitehead
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
- />Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI 48824 USA
| | - Bruce E Dale
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
- />Great Lakes Bioenergy Research Center (GLBRC), Michigan State University, 164 Food Safety and Toxicology Building, East Lansing, MI 48824 USA
- />Biomass Conversion Research Lab (BCRL), MBI Building, 3900 Collins Road, East Lansing, MI 48910 USA
| | - Shishir PS Chundawat
- />Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824 USA
- />Great Lakes Bioenergy Research Center (GLBRC), Michigan State University, 164 Food Safety and Toxicology Building, East Lansing, MI 48824 USA
- />Biomass Conversion Research Lab (BCRL), MBI Building, 3900 Collins Road, East Lansing, MI 48910 USA
- />Department of Chemical & Biochemical Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Room C-150A, Piscataway, NJ 08854 USA
| |
Collapse
|
22
|
Zhu Z, Kin Tam T, Sun F, You C, Percival Zhang YH. A high-energy-density sugar biobattery based on a synthetic enzymatic pathway. Nat Commun 2014; 5:3026. [DOI: 10.1038/ncomms4026] [Citation(s) in RCA: 203] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 11/26/2013] [Indexed: 12/24/2022] Open
|
23
|
Wang D, Hong J. Purification of a recombinant protein with cellulose-binding module 3 as the affinity tag. Methods Mol Biol 2014; 1177:35-45. [PMID: 24943312 DOI: 10.1007/978-1-4939-1034-2_3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Easy-to-perform and low-cost protein purification methods are in high demand for the mass production of commonly used enzymes that play an important role in bioeconomy. A low-cost and rapid recombinant protein purification system was developed using CBM3 (family 3 cellulose-binding module) as affinity tag. This protocol describes the purification of CBM3-fusion protein and tag-free protein expressed in Pichia pastoris using CBM3 as an affinity tag.
Collapse
Affiliation(s)
- Dongmei Wang
- School of Life Science, University of Science and Technology of China, Huangshan Road 443, 230026, Hefei, Anhui, People's Republic of China
| | | |
Collapse
|
24
|
Hyeon JE, Jeon SD, Han SO. Cellulosome-based, Clostridium-derived multi-functional enzyme complexes for advanced biotechnology tool development: advances and applications. Biotechnol Adv 2013; 31:936-44. [PMID: 23563098 DOI: 10.1016/j.biotechadv.2013.03.009] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2012] [Revised: 03/22/2013] [Accepted: 03/25/2013] [Indexed: 12/20/2022]
Abstract
The cellulosome is one of nature's most elegant and elaborate nanomachines and a key biological and biotechnological macromolecule that can be used as a multi-functional protein complex tool. Each protein module in the cellulosome system is potentially useful in an advanced biotechnology application. The high-affinity interactions between the cohesin and dockerin domains can be used in protein-based biosensors to improve both sensitivity and selectivity. The scaffolding protein includes a carbohydrate-binding module (CBM) that attaches strongly to cellulose substrates and facilitates the purification of proteins fused with the dockerin module through a one-step CBM purification method. Although the surface layer homology (SLH) domain of CbpA is not present in other strains, replacement of the cell surface anchoring domain allows a foreign protein to be displayed on the surface of other strains. The development of a hydrolysis enzyme complex is a useful strategy for consolidated bioprocessing (CBP), enabling microorganisms with biomass hydrolysis activity. Thus, the development of various configurations of multi-functional protein complexes for use as tools in whole-cell biocatalyst systems has drawn considerable attention as an attractive strategy for bioprocess applications. This review provides a detailed summary of the current achievements in Clostridium-derived multi-functional complex development and the impact of these complexes in various areas of biotechnology.
Collapse
Affiliation(s)
- Jeong Eun Hyeon
- School of Life Sciences and Biotechnology, Korea University, Seoul, 136-701, Republic of Korea
| | | | | |
Collapse
|
25
|
Gu Y, Huang J. Ultrathin cellulose film coating of porous alumina membranes for adsorption of superoxide dismutase. J Mater Chem B 2013; 1:5636-5643. [PMID: 32261187 DOI: 10.1039/c3tb20725k] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The non-toxic and biocompatible cellulose possesses nonspecific binding properties for many protein molecules. But its abundant inter- and intra-molecular hydrogen bonds induce spontaneous self-assembly of cellulose into a random fibrous morphology and cellulose film coating is usually just available for two-dimensional flat substrates, which severely limits its protein adsorption performance. In this study, direct self-assembly of an ultrathin cellulose film on hybrid polyelectrolyte multilayer pre-coated pore surfaces of an anodic aluminum oxide membrane was achieved through the dissolution and precipitation of cellulose from N-methylmorpholine oxide solution. Each pore channel surface pre-coated with a uniform polyelectrolyte hybrid layer (thickness ∼5.0 nm) was covered by a cellulose film (∼15.0 nm) consisting of dense cellulose nanoparticles with a diameter of 5.5 ± 1.4 nm. The three-dimensional porous structure of the aluminum oxide membrane was well-preserved and micrometre-long flexible nanotubes with an average outer diameter of ∼200 nm were obtained after further aluminum oxide template dissolution treatment in an acidic environment. Moreover, the cellulose film coated pore channel surfaces presented sufficient hydrogen bonds and exhibited a high adsorption capacity rate of ∼1.45 mg m-2 for superoxide dismutase. This facile cellulose deposition approach enabled ultrathin cellulose film coating on three-dimensional structured substrates for enhanced adsorption performance for protein molecules.
Collapse
Affiliation(s)
- Yuanqing Gu
- Department of Chemistry, Zhejiang University, Hangzhou, Zhejiang 310027, China.
| | | |
Collapse
|
26
|
Myung S, You C, Zhang YHP. Recyclable cellulose-containing magnetic nanoparticles: immobilization of cellulose-binding module-tagged proteins and a synthetic metabolon featuring substrate channeling. J Mater Chem B 2013; 1:4419-4427. [DOI: 10.1039/c3tb20482k] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
27
|
Li J, Liao XP, Zhang QX, Shi B. Adsorption and separation of proteins by collagen fiber adsorbent. J Chromatogr B Analyt Technol Biomed Life Sci 2013; 928:131-8. [DOI: 10.1016/j.jchromb.2013.03.031] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2012] [Revised: 01/18/2013] [Accepted: 03/28/2013] [Indexed: 01/28/2023]
|
28
|
Guan D, Ramirez M, Chen Z. Split intein mediated ultra‐rapid purification of tagless protein (SIRP). Biotechnol Bioeng 2013; 110:2471-81. [DOI: 10.1002/bit.24913] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Revised: 02/15/2013] [Accepted: 03/22/2013] [Indexed: 11/11/2022]
Affiliation(s)
- Dongli Guan
- Department of Chemical Engineering, 3122 TAMU, Artie McFerrinTexas A&M UniversityCollege StationTX 77843
| | - Miguel Ramirez
- Department of Chemical Engineering, 3122 TAMU, Artie McFerrinTexas A&M UniversityCollege StationTX 77843
| | - Zhilei Chen
- Department of Chemical Engineering, 3122 TAMU, Artie McFerrinTexas A&M UniversityCollege StationTX 77843
- Department of Microbial and Molecular PathogenesisTexas A&M Health Science CenterCollege StationTX
| |
Collapse
|
29
|
Cell-free Biosystems in the Production of Electricity and Bioenergy. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2013; 137:125-52. [PMID: 23748347 DOI: 10.1007/10_2013_201] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
: Increasing needs of green energy and concerns of climate change are motivating intensive R&D efforts toward the low-cost production of electricity and bioenergy, such as hydrogen, alcohols, and jet fuel, from renewable sugars. Cell-free biosystems for biomanufacturing (CFB2) have been suggested as an emerging platform to replace mainstream microbial fermentation for the cost-effective production of some biocommodities. As compared to whole-cell factories, cell-free biosystems comprised of synthetic enzymatic pathways have numerous advantages, such as high product yield, fast reaction rate, broad reaction condition, easy process control and regulation, tolerance of toxic compound/product, and an unmatched capability of performing unnatural reactions. However, issues pertaining to high costs and low stabilities of enzymes and cofactors as well as compromised optimal conditions for different source enzymes need to be solved before cell-free biosystems are scaled up for biomanufacturing. Here, we review the current status of cell-free technology, update recent advances, and focus on its applications in the production of electricity and bioenergy.
Collapse
|
30
|
Antonio-Pérez A, Ramón-Luing LA, Ortega-López J. Chromatographic refolding of rhodanese and lysozyme assisted by the GroEL apical domain, DsbA and DsbC immobilized on cellulose. J Chromatogr A 2012; 1248:122-9. [DOI: 10.1016/j.chroma.2012.05.086] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2012] [Revised: 05/06/2012] [Accepted: 05/22/2012] [Indexed: 10/28/2022]
|
31
|
Li J, Zheng L, Li P, Wang F. Intein-mediated expression, purification, and characterization of thymosin α1–thymopentin fusion peptide in Escherichia coli. Protein Expr Purif 2012; 84:1-8. [DOI: 10.1016/j.pep.2012.04.013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2012] [Revised: 04/16/2012] [Accepted: 04/17/2012] [Indexed: 10/28/2022]
|
32
|
Gao M, Tong Y, Tian H, Gao X, Yao W. Recombinant production of mGLP-1 by coupling of refolding and intein-mediated self-cleavage (CRIS). Appl Microbiol Biotechnol 2012; 96:1283-90. [PMID: 22644527 DOI: 10.1007/s00253-012-4163-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Revised: 05/04/2012] [Accepted: 05/10/2012] [Indexed: 11/21/2022]
Abstract
Glucagon-like peptide-1 as an endogenous glucose-lowering peptide is a promising candidate for anti-diabetic drug development. Here, we developed a convenient method by coupling of refolding and intein-mediated self-cleavage (CRIS) to improve the recombinant production of a mutated glucagon-like peptide-1 (mGLP-1). Bacterial cell culture employing auto-induction was performed at 37 °C to avoid the intracellular self-cleavage of the intein fusion protein. The impacts of urea, pH, and temperature on the efficiency of CRIS were tested, and then, the optimized CRIS was established. Using the optimized method, we obtained the purified mGLP-1 with a yield of 3.41 mg peptide/g bacterial cells which was 5.6-fold higher than before. After that, using chromatography, peptide electrophoresis, and mass spectrometry, we determined the purity and molecular weight of the purified peptide and then confirmed its glucose-lowering activity by performing glucose tolerance test in mice. These results suggest that CRIS is a relatively simple and efficacious method for the recombinant production of mGLP-1, and as a general method, it can also be used for the recombinant preparation of some other proteins and peptides.
Collapse
Affiliation(s)
- Mingming Gao
- State Key Laboratory of Natural Medicines, School of Life Science and Technology, China Pharmaceutical University, Tongjiaxiang 24, Nanjing, 210009, China
| | | | | | | | | |
Collapse
|
33
|
Hyeon JE, Kang DH, Kim YI, Jeon SD, You SK, Kim KY, Kim SW, Han SO. Production of functional agarolytic nano-complex for the synergistic hydrolysis of marine biomass and its potential application in carbohydrate-binding module-utilizing one-step purification. Process Biochem 2012. [DOI: 10.1016/j.procbio.2012.01.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
|
34
|
Bayram Akcapinar G, Gul O, Sezerman UO. From in silico to in vitro: Modelling and production of Trichoderma reesei endoglucanase 1 and its mutant in Pichia pastoris. J Biotechnol 2012; 159:61-8. [DOI: 10.1016/j.jbiotec.2012.01.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2011] [Revised: 01/02/2012] [Accepted: 01/04/2012] [Indexed: 10/28/2022]
|
35
|
Lan D, Tai Y, Shen Y, Wang F, Yang B, Wang Y. Efficient purification of native recombinant proteins using proteases immobilized on cellulose. J Biosci Bioeng 2012; 113:542-4. [DOI: 10.1016/j.jbiosc.2011.12.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2011] [Revised: 12/07/2011] [Accepted: 12/11/2011] [Indexed: 10/14/2022]
|
36
|
You C, Zhang YHP. Cell-free biosystems for biomanufacturing. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2012; 131:89-119. [PMID: 23111502 DOI: 10.1007/10_2012_159] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Although cell-free biosystems have been used as a tool for investigating fundamental aspects of biological systems for more than 100 years, they are becoming an emerging biomanufacturing platform in the production of low-value biocommodities (e.g., H(2), ethanol, and isobutanol), fine chemicals, and high-value protein and carbohydrate drugs and their precursors. Here we would like to define the cell-free biosystems containing more than three catalytic components in a single reaction vessel, which although different from one-, two-, or three-enzyme biocatalysis can be regarded as a straightforward extension of multienzymatic biocatalysis. In this chapter, we compare the advantages and disadvantages of cell-free biosystems versus living organisms, briefly review the history of cell-free biosystems, highlight a few examples, analyze any remaining obstacles to the scale-up of cell-free biosystems, and suggest potential solutions. Cell-free biosystems could become a disruptive technology to microbial fermentation, especially in the production of high-impact low-value biocommodities mainly due to the very high product yields and potentially low production costs.
Collapse
Affiliation(s)
- Chun You
- Biological Systems Engineering Department, Virginia Tech, 304 Seitz Hall, Blacksburg, VA, 24061, USA
| | | |
Collapse
|
37
|
Ye X, Zhang C, Zhang YHP. Engineering a large protein by combined rational and random approaches: stabilizing the Clostridium thermocellum cellobiose phosphorylase. MOLECULAR BIOSYSTEMS 2012; 8:1815-23. [DOI: 10.1039/c2mb05492b] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
|
38
|
|
39
|
CBM3d, a novel subfamily of family 3 carbohydrate-binding modules identified in Cel48A exoglucanase of Cellulosilyticum ruminicola. J Bacteriol 2011; 193:5199-206. [PMID: 21803997 DOI: 10.1128/jb.05227-11] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Previously, we found that exoglucanase Cel48A from Cellulosilyticum ruminicola H1 bound intensively to Avicel; however, no known carbohydrate-binding module (CBM) was observed in the protein. Bioinformatics suggested that a C-terminal fragment of 127 amino acids, named the Cellulosilyticum-specific paralogous module (CPM), could function in binding. CPM-appended proteins are all putative (hemi)cellulases from Cellulosilyticum spp. In the present work, we demonstrated that Cel48A without the CPM retained only exoglucanase activity and lost the Avicel-binding ability, while the isolated CPM exhibited a high affinity for Avicel. In addition, the CPM bound to chitin, but not to soluble polysaccharides, making it a type A CBM, which binds only insoluble polysaccharides. Phylogenetic analysis clustered the CPM and its homologs as a separate branch that was distantly related to CBM subfamilies 3a (28% identity), 3b (24% identity), and 3c (21% identity). Sequence alignment revealed distinct secondary structures of the new CBM 3 group, in particular, a conserved Pro66-Trp67 insert preceding strand β4', a deletion preceding strand β6, and incomplete strands β8 and β9. An alanine scan for six aromatic and three nonaromatic amino acid residues (D66, P66, and R111) by site-directed mutagenesis determined that Phe62, Pro66, Trp67, Tyr68, Arg111, and Trp117 were the functional residues for binding. Among them, Phe62, Pro66, and Trp67 were the newly determined key sites in the CPM for binding. Three-dimensional homolog modeling revealed two types of substrate-binding sites, planar and groove, in the CPM. Thus, a new subfamily, CBM family 3d, is proposed.
Collapse
|
40
|
Zhang YHP. Simpler Is Better: High-Yield and Potential Low-Cost Biofuels Production through Cell-Free Synthetic Pathway Biotransformation (SyPaB). ACS Catal 2011. [DOI: 10.1021/cs200218f] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Y.-H. Percival Zhang
- Biological Systems Engineering Department, Virginia Tech, 210-A Seitz Hall, Blacksburg, Virginia 24061, United States
- Institute for Critical Technology and Applied Science (ICTAS), Virginia Tech, Virginia 24061, United States
- DOE Bioenergy Science Center, Oak Ridge, Tennessee 37831, United States
- Gate Fuels Inc., 3107 Alice Dr., Blacksburg, Virginia 24060, United States
| |
Collapse
|
41
|
One-step purification and immobilization of thermophilic polyphosphate glucokinase from Thermobifida fusca YX: glucose-6-phosphate generation without ATP. Appl Microbiol Biotechnol 2011; 93:1109-17. [PMID: 21766194 DOI: 10.1007/s00253-011-3458-1] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2011] [Revised: 06/17/2011] [Accepted: 06/19/2011] [Indexed: 10/18/2022]
Abstract
The discovery of stable and active polyphosphate glucokinase (PPGK, EC 2.7.1.63) would be vital to cascade enzyme biocatalysis that does not require a costly ATP input. An open reading frame Tfu_1811 from Thermobifida fusca YX encoding a putative PPGK was cloned and the recombinant protein fused with a family 3 cellulose-binding module (CBM-PPGK) was overexpressed in Escherichia coli. Mg²⁺ was an indispensible activator. This enzyme exhibited the highest activity in the presence of 4 mM Mg²⁺ at 55°C and pH 9.0. Under its suboptimal conditions (pH 7.5), the k (cat) and K(m) values of CBM-PPGK on glucose were 96.9 and 39.7 s⁻¹ as well as 0.77 and 0.45 mM at 37°C and 50°C respectively. The thermoinactivation of CBM-PPGK was independent of its mass concentration. Through one-step enzyme purification and immobilization on a high-capacity regenerated amorphous cellulose, immobilized CBM-PPGK had an approximately eightfold half lifetime enhancement (i.e., t(1/2) = 120 min) as compared to free enzyme at 50°C. To our limited knowledge, this enzyme was the first thermostable PPGK reported. Free PPGK and immobilized CBM-PPGK had total turnover number values of 126,000 and 961,000 mol product per mol enzyme, respectively, suggesting their great potential in glucose-6-phosphate generation based on low-cost polyphosphate.
Collapse
|
42
|
Biohydrogenation from biomass sugar mediated by in vitro synthetic enzymatic pathways. ACTA ACUST UNITED AC 2011; 18:372-80. [PMID: 21439482 DOI: 10.1016/j.chembiol.2010.12.019] [Citation(s) in RCA: 85] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2010] [Revised: 12/06/2010] [Accepted: 12/13/2010] [Indexed: 11/22/2022]
Abstract
Different from NAD(P)H regeneration approaches mediated by a single enzyme or a whole-cell microorganism, we demonstrate high-yield generation of NAD(P)H from a renewable biomass sugar--cellobiose through in vitro synthetic enzymatic pathways consisting of 12 purified enzymes and coenzymes. When the NAD(P)H generation system was coupled with its consumption reaction mediated by xylose reductase, the NADPH yield was as high as 11.4 mol NADPH per cellobiose (i.e., 95% of theoretical yield--12 NADPH per glucose unit) in a batch reaction. Consolidation of endothermic reactions and exothermic reactions in one pot results in a very high energy-retaining efficiency of 99.6% from xylose and cellobiose to xylitol. The combination of this high-yield and projected low-cost biohydrogenation and aqueous phase reforming may be important for the production of sulfur-free liquid jet fuel in the future.
Collapse
|
43
|
Affiliation(s)
- Y.-H. Percival Zhang
- Department of Biological Systems Engineering, Virginia Tech, 210-A Seitz Hall, Blacksburg, VA 24061, USA
- Institute for Critical Technology and Applied Science (ICTAS), Virginia Tech, Blacksburg, VA 24061, USA
- DOE BioEnergy Science Center (BESC), Oak Ridge, TN 37831, USA
| |
Collapse
|
44
|
Wan W, Wang D, Gao X, Hong J. Expression of family 3 cellulose-binding module (CBM3) as an affinity tag for recombinant proteins in yeast. Appl Microbiol Biotechnol 2011; 91:789-98. [DOI: 10.1007/s00253-011-3373-5] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2011] [Revised: 05/04/2011] [Accepted: 05/06/2011] [Indexed: 11/28/2022]
|
45
|
Myung S, Zhang XZ, Zhang YHP. Ultra-stable phosphoglucose isomerase through immobilization of cellulose-binding module-tagged thermophilic enzyme on low-cost high-capacity cellulosic adsorbent. Biotechnol Prog 2011; 27:969-75. [PMID: 21630486 DOI: 10.1002/btpr.606] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2010] [Revised: 01/08/2011] [Indexed: 01/31/2023]
Abstract
One-step enzyme purification and immobilization were developed based on simple adsorption of a family 3 cellulose-binding module (CBM)-tagged protein on the external surface of high-capacity regenerated amorphous cellulose (RAC). An open reading frame (ORF) Cthe0217 encoding a putative phosphoglucose isomerase (PGI, EC 5.3.1.9) from a thermophilic bacterium Clostridium thermocellum was cloned and the recombinant proteins with or without CBM were over-expressed in Escherichia coli. The rate constant (kcat ) and Michaelis-Menten constant (Km ) of CBM-free PGI at 60°C were 2,765 s(-1) and 2.89 mM, respectively. PGI was stable at a high protein concentration of 0.1 g/L but deactivated rapidly at low concentrations. Immobilized CBM (iCBM)-PGI on RAC was extremely stable at ∼60°C, nearly independent of its mass concentration in bulk solution, because its local concentration on the solid support was constant. iCBM-PGI at a low concentration of 0.001 g/L had a half-life time of 190 h, approximately 80-fold of that of free PGI. Total turn-over number of iCBM-PGI was as high as 1.1×10(9) mole of product per mole of enzyme at 60°C. These results suggest that a combination of low-cost enzyme immobilization and thermoenzyme led to an ultra-stable enzyme building block suitable for cell-free synthetic pathway biotransformation that can implement complicated biochemical reactions in vitro.
Collapse
Affiliation(s)
- Suwan Myung
- Dept. of Biological Systems Engineering, Virginia Polytechnic Institute and State University, 210-A Seitz Hall, Blacksburg, VA 24061, USA
| | | | | |
Collapse
|
46
|
Intein-mediated one-step purification of Escherichia coli secreted human antibody fragments. Protein Expr Purif 2011; 76:221-8. [DOI: 10.1016/j.pep.2010.12.004] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2010] [Revised: 12/13/2010] [Accepted: 12/13/2010] [Indexed: 11/17/2022]
|
47
|
Renewable Hydrogen Carrier — Carbohydrate: Constructing the Carbon-Neutral Carbohydrate Economy. ENERGIES 2011. [DOI: 10.3390/en4020254] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
|
48
|
Self-cleaving fusion tags for recombinant protein production. Biotechnol Lett 2011; 33:869-81. [PMID: 21267760 DOI: 10.1007/s10529-011-0533-8] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2010] [Accepted: 12/23/2010] [Indexed: 02/04/2023]
Abstract
Fusion expression is a common practice for recombinant protein production. Some fusion tags confer solubility on the target protein whereas others provide affinity handles that facilitate purification. However, the tag usually needs to be removed from the final product, which involves using expensive proteases or hazardous chemicals and requires additional chromatography steps. Self-cleaving tags are a special group of fusion tags that possess inducible proteolytic activity. Combined with appropriate affinity tags, they enable fusion purification, cleavage and target separation to be achieved in a single step, which saves time, labor and cost. This paper reviews currently available self-cleaving fusion tags for recombinant protein production. For each system, an introduction of its key characteristics and a brief discussion of its advantages and disadvantages is given.
Collapse
|
49
|
Zhang YHP, Myung S, You C, Zhu Z, Rollin JA. Toward low-cost biomanufacturing through in vitro synthetic biology: bottom-up design. ACTA ACUST UNITED AC 2011. [DOI: 10.1039/c1jm12078f] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
|
50
|
Fructose-1,6-bisphosphatase from a hyper-thermophilic bacterium Thermotoga maritima: Characterization, metabolite stability, and its implications. Process Biochem 2010. [DOI: 10.1016/j.procbio.2010.03.017] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|