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Liu L, Zheng R, Wu D, Yuan Y, Lin Y, Wang D, Jiang T, Cao J, Xu Y. Global and multi-partition local network analysis of scalp EEG in West syndrome before and after treatment. Neural Netw 2024; 179:106540. [PMID: 39079377 DOI: 10.1016/j.neunet.2024.106540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/12/2024] [Accepted: 07/12/2024] [Indexed: 09/18/2024]
Abstract
West syndrome is an epileptic disease that seriously affects the normal growth and development of infants in early childhood. Based on the methods of brain topological network and graph theory, this article focuses on three clinical states of patients before and after treatment. In addition to discussing bidirectional and unidirectional global networks from the perspective of computational principles, a more in-depth analysis of local intra-network and inter-network characteristics of multi-partitioned networks is also performed. The spatial feature distribution based on feature path length is introduced for the first time. The results show that the bidirectional network has better significant differentiation. The rhythmic feature change trend and spatial characteristic distribution of this network can be used as a measure of the impact on global information processing in the brain after treatment. And localized brain regions variability in features and differences in the ability to interact with information between brain regions have potential as biomarkers for medication assessment in WEST syndrome. The above shows specific conclusions on the interaction relationship and consistency of macro-network and micro-network, which may have a positive effect on patients' treatment and prognosis management.
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Affiliation(s)
- Lishan Liu
- School of Communication Engineering, Hangzhou Dianzi University, Hangzhou, 310052, China.
| | - Runze Zheng
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Hangzhou, 310018, China.
| | - Duanpo Wu
- School of Communication Engineering, Hangzhou Dianzi University, Hangzhou, 310052, China; Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou, 310018, China.
| | - Yixuan Yuan
- Department of Electronic Engineering, The Chinese University of Hong Kong, 999077, Hong Kong, China.
| | - Yi Lin
- School of Communication Engineering, Hangzhou Dianzi University, Hangzhou, 310052, China.
| | - Danping Wang
- Plateforme d'Etude de la Sensorimotricité (PES), BioMedTech Facilities, Université Paris Cité, Paris, 75270, France.
| | - Tiejia Jiang
- Children's Hospital, Zhejiang University School of Medicine, Hangzhou, 310018, China.
| | - Jiuwen Cao
- Machine Learning and I-health International Cooperation Base of Zhejiang Province, Hangzhou, 310018, China; Artificial Intelligence Institute, Hangzhou Dianzi University, Hangzhou, 310018, China; Research Center for Intelligent Sensing, Zhejiang Lab, Hangzhou, 311100, China.
| | - Yuansheng Xu
- Department of Emergency, Affiliated Hangzhou First People's Hospital, School of Medicine, Westlake University, Hangzhou, 310006, China.
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Semba S, Yang H, Chen X, Wan H, Gu C. Estimation of Carleman operator from a univariate time series. CHAOS (WOODBURY, N.Y.) 2024; 34:083103. [PMID: 39088344 DOI: 10.1063/5.0209612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 07/10/2024] [Indexed: 08/03/2024]
Abstract
Reconstructing a nonlinear dynamical system from empirical time series is a fundamental task in data-driven analysis. One of the main challenges is the existence of hidden variables; we only have records for some variables, and those for hidden variables are unavailable. In this work, the techniques for Carleman linearization, phase-space embedding, and dynamic mode decomposition are integrated to rebuild an optimal dynamical system from time series for one specific variable. Using the Takens theorem, the embedding dimension is determined, which is adopted as the dynamical system's dimension. The Carleman linearization is then used to transform this finite nonlinear system into an infinite linear system, which is further truncated into a finite linear system using the dynamic mode decomposition technique. We illustrate the performance of this integrated technique using data generated by the well-known Lorenz model, the Duffing oscillator, and empirical records of electrocardiogram, electroencephalogram, and measles outbreaks. The results show that this solution accurately estimates the operators of the nonlinear dynamical systems. This work provides a new data-driven method to estimate the Carleman operator of nonlinear dynamical systems.
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Affiliation(s)
- Sherehe Semba
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
- Faculty of Science, Dar es Salaam University College of Education, University of Dar es Salaam, Dar es Salaam, Tanzania
| | - Huijie Yang
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Xiaolu Chen
- Nanxun Innovation Institute, Zhejiang University of Water Resources and Electric Power, Hangzhou 310018, China
| | - Huiyun Wan
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Changgui Gu
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
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3
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Aljalal M, Aldosari SA, AlSharabi K, Alturki FA. EEG-Based Detection of Mild Cognitive Impairment Using DWT-Based Features and Optimization Methods. Diagnostics (Basel) 2024; 14:1619. [PMID: 39125495 PMCID: PMC11312237 DOI: 10.3390/diagnostics14151619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/13/2024] [Accepted: 07/25/2024] [Indexed: 08/12/2024] Open
Abstract
In recent years, electroencephalography (EEG) has been investigated for identifying brain disorders. This technique involves placing multiple electrodes (channels) on the scalp to measure the brain's activities. This study focuses on accurately detecting mild cognitive impairment (MCI) from the recorded EEG signals. To achieve this, this study first introduced discrete wavelet transform (DWT)-based approaches to generate reliable biomarkers for MCI. These approaches decompose each channel's signal using DWT into a set of distinct frequency band signals, then extract features using a non-linear measure such as band power, energy, or entropy. Various machine learning approaches then classify the generated features. We investigated these methods on EEGs recorded using 19 channels from 29 MCI patients and 32 healthy subjects. In the second step, the study explored the possibility of decreasing the number of EEG channels while preserving, or even enhancing, classification accuracy. We employed multi-objective optimization techniques, such as the non-dominated sorting genetic algorithm (NSGA) and particle swarm optimization (PSO), to achieve this. The results show that the generated DWT-based features resulted in high full-channel classification accuracy scores. Furthermore, selecting fewer channels carefully leads to better accuracy scores. For instance, with a DWT-based approach, the full-channel accuracy achieved was 99.84%. With only four channels selected by NSGA-II, NSGA-III, or PSO, the accuracy increased to 99.97%. Furthermore, NSGA-II selects five channels, achieving an accuracy of 100%. The results show that the suggested DWT-based approaches are promising to detect MCI, and picking the most useful EEG channels makes the accuracy even higher. The use of a small number of electrodes paves the way for EEG-based diagnosis in clinical practice.
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Affiliation(s)
- Majid Aljalal
- Department of Electrical Engineering, College of Engineering, King Saud University, Riyadh 11421, Saudi Arabia; (S.A.A.); (K.A.); (F.A.A.)
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4
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Wu H, Qi J, Purwanto E, Zhu X, Yang P, Chen J. Multi-Scale Feature and Multi-Channel Selection toward Parkinson's Disease Diagnosis with EEG. SENSORS (BASEL, SWITZERLAND) 2024; 24:4634. [PMID: 39066031 PMCID: PMC11280892 DOI: 10.3390/s24144634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/10/2024] [Accepted: 07/13/2024] [Indexed: 07/28/2024]
Abstract
OBJECTIVE Motivated by Health Care 4.0, this study aims to reducing the dimensionality of traditional EEG features based on manual extracted features, including statistical features in the time and frequency domains. METHODS A total of 22 multi-scale features were extracted from the UNM and Iowa datasets using a 4th order Butterworth filter and wavelet packet transform. Based on single-channel validation, 29 channels with the highest R2 scores were selected from a pool of 59 common channels. The proposed channel selection scheme was validated on the UNM dataset and tested on the Iowa dataset to compare its generalizability against models trained without channel selection. RESULTS The experimental results demonstrate that the proposed model achieves an optimal classification accuracy of 100%. Additionally, the generalization capability of the channel selection method is validated through out-of-sample testing based on the Iowa dataset Conclusions: Using single-channel validation, we proposed a channel selection scheme based on traditional statistical features, resulting in a selection of 29 channels. This scheme significantly reduced the dimensionality of EEG feature vectors related to Parkinson's disease by 50%. Remarkably, this approach demonstrated considerable classification performance on both the UNM and Iowa datasets. For the closed-eye state, the highest classification accuracy achieved was 100%, while for the open-eye state, the highest accuracy reached 93.75%.
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Affiliation(s)
- Haoyu Wu
- Department of Computing, Xi’an Jiaotong-Liverpool Univeristy, Suzhou 215000, China; (H.W.); (E.P.); (X.Z.)
| | - Jun Qi
- Department of Computing, Xi’an Jiaotong-Liverpool Univeristy, Suzhou 215000, China; (H.W.); (E.P.); (X.Z.)
| | - Erick Purwanto
- Department of Computing, Xi’an Jiaotong-Liverpool Univeristy, Suzhou 215000, China; (H.W.); (E.P.); (X.Z.)
| | - Xiaohui Zhu
- Department of Computing, Xi’an Jiaotong-Liverpool Univeristy, Suzhou 215000, China; (H.W.); (E.P.); (X.Z.)
| | - Po Yang
- Department of Computer Science, The University of Sheffield, Sheffield S10 2TN, UK;
| | - Jianjun Chen
- Department of Computing, Xi’an Jiaotong-Liverpool Univeristy, Suzhou 215000, China; (H.W.); (E.P.); (X.Z.)
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Ramaswamy SM, Kuizenga MH, Weerink MAS, Vereecke HEM, Nagaraj SB, Struys MMRF. Do all sedatives promote biological sleep electroencephalogram patterns? A machine learning framework to identify biological sleep promoting sedatives using electroencephalogram. PLoS One 2024; 19:e0304413. [PMID: 38954679 PMCID: PMC11218986 DOI: 10.1371/journal.pone.0304413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Accepted: 05/10/2024] [Indexed: 07/04/2024] Open
Abstract
BACKGROUND Sedatives are commonly used to promote sleep in intensive care unit patients. However, it is not clear whether sedation-induced states are similar to the biological sleep. We explored if sedative-induced states resemble biological sleep using multichannel electroencephalogram (EEG) recordings. METHODS Multichannel EEG datasets from two different sources were used in this study: (1) sedation dataset consisting of 102 healthy volunteers receiving propofol (N = 36), sevoflurane (N = 36), or dexmedetomidine (N = 30), and (2) publicly available sleep EEG dataset (N = 994). Forty-four quantitative time, frequency and entropy features were extracted from EEG recordings and were used to train the machine learning algorithms on sleep dataset to predict sleep stages in the sedation dataset. The predicted sleep states were then compared with the Modified Observer's Assessment of Alertness/ Sedation (MOAA/S) scores. RESULTS The performance of the model was poor (AUC = 0.55-0.58) in differentiating sleep stages during propofol and sevoflurane sedation. In the case of dexmedetomidine, the AUC of the model increased in a sedation-dependent manner with NREM stages 2 and 3 highly correlating with deep sedation state reaching an AUC of 0.80. CONCLUSIONS We addressed an important clinical question to identify biological sleep promoting sedatives using EEG signals. We demonstrate that propofol and sevoflurane do not promote EEG patterns resembling natural sleep while dexmedetomidine promotes states resembling NREM stages 2 and 3 sleep, based on current sleep staging standards.
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Affiliation(s)
- Sowmya M. Ramaswamy
- Department of Anesthesiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - Merel H. Kuizenga
- Department of Anesthesiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - Maud A. S. Weerink
- Department of Anesthesiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
| | - Hugo E. M. Vereecke
- Department of Anesthesiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
- Department of Anesthesiology and Reanimation, AZ St.-Jan Brugge Oostende AV, Brugge, Belgium
| | - Sunil B. Nagaraj
- School of Physics, Maths and Computing, Computer Science and Software Engineering, The University of Western Australia, Perth, Australia
| | - Michel M. R. F. Struys
- Department of Anesthesiology, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
- Department of Basic and Applied Medical Sciences, Ghent University, Gent, Belgium
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Rajaraman RR, Smith RJ, Oana S, Daida A, Shrey DW, Nariai H, Lopour BA, Hussain SA. Computational EEG attributes predict response to therapy for epileptic spasms. Clin Neurophysiol 2024; 163:39-46. [PMID: 38703698 DOI: 10.1016/j.clinph.2024.03.035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 03/10/2024] [Accepted: 03/28/2024] [Indexed: 05/06/2024]
Abstract
OBJECTIVE We set out to evaluate whether response to treatment for epileptic spasms is associated with specific candidate computational EEG biomarkers, independent of clinical attributes. METHODS We identified 50 children with epileptic spasms, with pre- and post-treatment overnight video-EEG. After EEG samples were preprocessed in an automated fashion to remove artifacts, we calculated amplitude, power spectrum, functional connectivity, entropy, and long-range temporal correlations (LRTCs). To evaluate the extent to which each feature is independently associated with response and relapse, we conducted logistic and proportional hazards regression, respectively. RESULTS After statistical adjustment for the duration of epileptic spasms prior to treatment, we observed an association between response and stronger baseline and post-treatment LRTCs (P = 0.042 and P = 0.004, respectively), and higher post-treatment entropy (P = 0.003). On an exploratory basis, freedom from relapse was associated with stronger post-treatment LRTCs (P = 0.006) and higher post-treatment entropy (P = 0.044). CONCLUSION This study suggests that multiple EEG features-especially LRTCs and entropy-may predict response and relapse. SIGNIFICANCE This study represents a step toward a more precise approach to measure and predict response to treatment for epileptic spasms.
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Affiliation(s)
- Rajsekar R Rajaraman
- Division of Pediatric Neurology, UCLA Mattel Children's Hospital and University of California, Los Angeles, Los Angeles, CA, USA
| | - Rachel J Smith
- Department of Electrical and Computer Engineering, University of Alabama at Birmingham, Birmingham, AL, USA
| | - Shingo Oana
- Division of Pediatric Neurology, UCLA Mattel Children's Hospital and University of California, Los Angeles, Los Angeles, CA, USA
| | - Atsuro Daida
- Division of Pediatric Neurology, UCLA Mattel Children's Hospital and University of California, Los Angeles, Los Angeles, CA, USA
| | - Daniel W Shrey
- Division of Pediatric Neurology, University of California, Irvine, Irvine, CA, USA; Department of Neurology, Children's Hospital of Orange County, Orange, CA, USA
| | - Hiroki Nariai
- Division of Pediatric Neurology, UCLA Mattel Children's Hospital and University of California, Los Angeles, Los Angeles, CA, USA
| | - Beth A Lopour
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA
| | - Shaun A Hussain
- Division of Pediatric Neurology, UCLA Mattel Children's Hospital and University of California, Los Angeles, Los Angeles, CA, USA.
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Li J, Ping AA, Zhou Y, Su T, Li X, Xu S. Interictal EEG features as computational biomarkers of West syndrome. Front Pediatr 2024; 12:1406772. [PMID: 38903771 PMCID: PMC11188363 DOI: 10.3389/fped.2024.1406772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 05/27/2024] [Indexed: 06/22/2024] Open
Abstract
Background West syndrome (WS) is a devastating epileptic encephalopathy with onset in infancy and early childhood. It is characterized by clustered epileptic spasms, developmental arrest, and interictal hypsarrhythmia on electroencephalogram (EEG). Hypsarrhythmia is considered the hallmark of WS, but its visual assessment is challenging due to its wide variability and lack of a quantifiable definition. This study aims to analyze the EEG patterns in WS and identify computational diagnostic biomarkers of the disease. Method Linear and non-linear features derived from EEG recordings of 31 WS patients and 20 age-matched controls were compared. Subsequently, the correlation of the identified features with structural and genetic abnormalities was investigated. Results WS patients showed significantly elevated alpha-band activity (0.2516 vs. 0.1914, p < 0.001) and decreased delta-band activity (0.5117 vs. 0.5479, p < 0.001), particularly in the occipital region, as well as globally strengthened theta-band activity (0.2145 vs. 0.1655, p < 0.001) in power spectrum analysis. Moreover, wavelet-bicoherence analysis revealed significantly attenuated cross-frequency coupling in WS patients. Additionally, bi-channel coherence analysis indicated minor connectivity alterations in WS patients. Among the four non-linear characteristics of the EEG data (i.e., approximate entropy, sample entropy, permutation entropy, and wavelet entropy), permutation entropy showed the most prominent global reduction in the EEG of WS patients compared to controls (1.4411 vs. 1.5544, p < 0.001). Multivariate regression results suggested that genetic etiologies could influence the EEG profiles of WS, whereas structural factors could not. Significance A combined global strengthening of theta activity and global reduction of permutation entropy can serve as computational EEG biomarkers for WS. Implementing these biomarkers in clinical practice may expedite diagnosis and treatment in WS, thereby improving long-term outcomes.
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Affiliation(s)
- Jiaqing Li
- Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - An-an Ping
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
| | - Yalan Zhou
- Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Tangfeng Su
- Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
| | - Xiaoli Li
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China
| | - Sanqing Xu
- Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
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Yao B, Wu C, Zhang X, Yao J, Xue J, Zhao Y, Li T, Pu J. The EEG-Based Fusion Entropy-Featured Identification of Isometric Contraction Forces under the Same Action. SENSORS (BASEL, SWITZERLAND) 2024; 24:2323. [PMID: 38610534 PMCID: PMC11014078 DOI: 10.3390/s24072323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 04/02/2024] [Accepted: 04/02/2024] [Indexed: 04/14/2024]
Abstract
This study explores the important role of assessing force levels in accurately controlling upper limb movements in human-computer interfaces. It uses a new method that combines entropy to improve the recognition of force levels. This research aims to differentiate between different levels of isometric contraction forces using electroencephalogram (EEG) signal analysis. It integrates eight different entropy measures: power spectrum entropy (PSE), singular spectrum entropy (SSE), logarithmic energy entropy (LEE), approximation entropy (AE), sample entropy (SE), fuzzy entropy (FE), alignment entropy (PE), and envelope entropy (EE). The findings emphasize two important advances: first, including a wide range of entropy features significantly improves classification efficiency; second, the fusion entropy method shows exceptional accuracy in classifying isometric contraction forces. It achieves an accuracy rate of 91.73% in distinguishing between 15% and 60% maximum voluntary contraction (MVC) forces, along with 69.59% accuracy in identifying variations across 15%, 30%, 45%, and 60% MVC. These results illuminate the efficacy of employing fusion entropy in EEG signal analysis for isometric contraction detection, heralding new opportunities for advancing motor control and facilitating fine motor movements through sophisticated human-computer interface technologies.
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Affiliation(s)
- Bo Yao
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
| | - Chengzhen Wu
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
- School of Life Sciences, Tiangong University, Tianjin 300387, China
| | - Xing Zhang
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
| | - Junjie Yao
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
| | - Jianchao Xue
- Department of Orthopedic Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China; (J.X.)
| | - Yu Zhao
- Department of Orthopedic Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China; (J.X.)
| | - Ting Li
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
| | - Jiangbo Pu
- Institute of Biomedical Engineering, Chinese Academy of Medical Sciences and Peking Union Medical College, Tianjin 300192, China; (B.Y.); (C.W.); (X.Z.); (J.Y.)
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Abdellatef E, Emara HM, Shoaib MR, Ibrahim FE, Elwekeil M, El-Shafai W, Taha TE, El-Fishawy AS, El-Rabaie ESM, Eldokany IM, Abd El-Samie FE. Automated diagnosis of EEG abnormalities with different classification techniques. Med Biol Eng Comput 2023; 61:3363-3385. [PMID: 37672143 DOI: 10.1007/s11517-023-02843-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 04/23/2023] [Indexed: 09/07/2023]
Abstract
Automatic seizure detection and prediction using clinical Electroencephalograms (EEGs) are challenging tasks due to factors such as low Signal-to-Noise Ratios (SNRs), high variance in epileptic seizures among patients, and limited clinical data constraints. To overcome these challenges, this paper presents two approaches for EEG signal classification. One of these approaches depends on Machine Learning (ML) tools. The used features are different types of entropy, higher-order statistics, and sub-band energies in the Hilbert Marginal Spectrum (HMS) domain. The classification is performed using Support Vector Machine (SVM), Logistic Regression (LR), and K-Nearest Neighbor (KNN) classifiers. Both seizure detection and prediction scenarios are considered. The second approach depends on spectrograms of EEG signal segments and a Convolutional Neural Network (CNN)-based residual learning model. We use 10000 spectrogram images for each class. In this approach, it is possible to perform both seizure detection and prediction in addition to a 3-state classification scenario. Both approaches are evaluated on the Children's Hospital Boston and the Massachusetts Institute of Technology (CHB-MIT) dataset, which contains 24 EEG recordings for 6 males and 18 females. The results obtained for the HMS-based model showed an accuracy of 100%. The CNN-based model achieved accuracies of 97.66%, 95.59%, and 94.51% for Seizure (S) versus Pre-Seizure (PS), Non-Seizure (NS) versus S, and NS versus S versus PS classes, respectively. These results demonstrate that the proposed approaches can be effectively used for seizure detection and prediction. They outperform the state-of-the-art techniques for automatic seizure detection and prediction. Block diagram of proposed epileptic seizure detection method using HMS with different classifiers.
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Affiliation(s)
- Essam Abdellatef
- Department of Electronics and Communications, Delta Higher Institute for Engineering and Technology (DHIET), 35511, Mansoura, Egypt
| | - Heba M Emara
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | - Mohamed R Shoaib
- School of Computer Science and Engineering, Nanyang Technological University, Singapore, Singapore
| | - Fatma E Ibrahim
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | - Mohamed Elwekeil
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | - Walid El-Shafai
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt.
- Security Engineering Laboratory, Department of Computer Science College of Engineering, Prince Sultan University, Riyadh, 11586, Saudi Arabia.
| | - Taha E Taha
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | - Adel S El-Fishawy
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | | | - Ibrahim M Eldokany
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
| | - Fathi E Abd El-Samie
- Faculty of Electronic Engineering, Menoufia University, 32952, Menouf, Egypt
- Department of Information Technology, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, 11671, Riyadh, Saudi Arabia
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10
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Wu Z, Tang X, Wu J, Huang J, Shen J, Hong H. Portable deep-learning decoder for motor imaginary EEG signals based on a novel compact convolutional neural network incorporating spatial-attention mechanism. Med Biol Eng Comput 2023; 61:2391-2404. [PMID: 37095297 DOI: 10.1007/s11517-023-02840-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 04/13/2023] [Indexed: 04/26/2023]
Abstract
Due to high computational requirements, deep-learning decoders for motor imaginary (MI) electroencephalography (EEG) signals are usually implemented on bulky and heavy computing devices that are inconvenient for physical actions. To date, the application of deep-learning techniques in independent portable brain-computer-interface (BCI) devices has not been extensively explored. In this study, we proposed a high-accuracy MI EEG decoder by incorporating spatial-attention mechanism into convolution neural network (CNN), and deployed it on fully integrated single-chip microcontroller unit (MCU). After the CNN model was trained on workstation computer using GigaDB MI datasets (52 subjects), its parameters were then extracted and converted to build deep-learning architecture interpreter on MCU. For comparison, EEG-Inception model was also trained using the same dataset, and was deployed on MCU. The results indicate that our deep-learning model can independently decode imaginary left-/right-hand motions. The mean accuracy of the proposed compact CNN reaches 96.75 ± 2.41% (8 channels: Frontocentral3 (FC3), FC4, Central1 (C1), C2, Central-Parietal1 (CP1), CP2, C3, and C4), versus 76.96 ± 19.08% of EEG-Inception (6 channels: FC3, FC4, C1, C2, CP1, and CP2). To the best of our knowledge, this is the first portable deep-learning decoder for MI EEG signals. The findings demonstrate high-accuracy deep-learning decoding of MI EEG in a portable mode, which has great implications for hand-disabled patients. Our portable system can be used for developing artificial-intelligent wearable BCI devices, as it is less computationally expensive and convenient for real-life application.
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Affiliation(s)
- Zhanxiong Wu
- School of Electronic Information, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang, China.
| | - Xudong Tang
- School of Electronic Information, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang, China
| | - Jinhui Wu
- School of Electronic Information, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang, China
| | - Jiye Huang
- School of Electronic Information, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang, China
| | - Jian Shen
- Neurosurgery Department, The First Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310003, Zhejiang, China
| | - Hui Hong
- School of Electronic Information, Hangzhou Dianzi University, Hangzhou, 310018, Zhejiang, China
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Sadoun MSN, Ur Rahman MM, Al-Naffouri T, Laleg-Kirati TM. EEG Epileptic Data Classification Using the Schrodinger Operator's Spectrum. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-6. [PMID: 38083329 DOI: 10.1109/embc40787.2023.10340881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Epilepsy is a common brain disorder characterized by recurrent, unprovoked seizures which affects over 65 million people. Visual inspection of Electroencephalograms (EEG) is common for diagnosis; however, it requires time and expertise. Therefore, an accurate computer-aided epileptic seizure diagnosis system would be valuable. A new research tendency when tackling epileptic seizure detection tends towards minimizing human manual intervention by designing frameworks with autonomous feature engineering. In this optic, this paper proposes a new approach for EEG epileptic data classification. Features derived from the Semi-Classical Signal Analysis (SCSA) method, a quantum-inspired signal processing method well-suited for the characterization of pulse-shaped physiological signals, are proposed. In addition nonlinear dynamical features that proved efficient in characterizing nonlinear dynamics of neural activity have been extracted. Moreover, hyperparameters' optimization, correlation analysis and feature selection have been performed. The selected features are fed into five different machine learning classifiers. The performance of the proposed approach has been analyzed using Bonn university database. The results show that all classifiers yield a performance accuracy of 93% and above.Clinical relevance- The paper contributes to the design of methods and algorithms to build reliable software solutions to assist medical experts and reduce epilepsy disease's diagnosis time and errors.
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12
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Torakis I, Antonakakis M, Bei ES, Gikas P, Sakkalis V, Zervakis M. Design of a Multi-Feature Classification Scheme for Infant Epileptic Seizures. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083337 DOI: 10.1109/embc40787.2023.10341164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Neonatal epileptic seizures take place in the early childhood years, accounting for a severe condition with several deaths and neurological problems in newborn neonates. Despite the early advancements on the diagnosis and/or treatment of this condition, as a major difficulty accounts the inability of the physicians to identify and characterize a seizure, as one a small percentage gets detected in neonatal intensive care units (NICU). An important step towards any kind of seizure classification is the detection and reduction of non-cerebral activity. Towards this direction, our multi-feature approach contains spectral and statistical characteristics of EEG signals of 79 infants with suspicion of seizure and assesses the performance of two classification algorithms iteratively. The trained models (Support Vector Machine (SVM) and Random Forest classifiers) yielded high classification performance (>80% and >85% respectively). A robust neonatal seizure classification scheme is thus proposed, along with nine high scoring spectrum and statistical features. The importance of embedding an artefact reduction approach is also discussed, since the complex artifacts spread throughout the signals have great impact on the accuracy of the algorithms. The nine extracted high scoring spectral and statistical features might be used as potential biomarkers for neonatal seizure prediction in a clinical setting.
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13
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Maher C, Yang Y, Truong ND, Wang C, Nikpour A, Kavehei O. Seizure detection with reduced electroencephalogram channels: research trends and outlook. ROYAL SOCIETY OPEN SCIENCE 2023; 10:230022. [PMID: 37153360 PMCID: PMC10154941 DOI: 10.1098/rsos.230022] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Accepted: 04/11/2023] [Indexed: 05/09/2023]
Abstract
Epilepsy is a prevalent condition characterized by recurrent, unpredictable seizures. Monitoring with surface electroencephalography (EEG) is the gold standard for diagnosing epilepsy, but a time-consuming, uncomfortable and sometimes ineffective process for patients. Further, using EEG over a brief monitoring period has variable success, dependent on patient tolerance and seizure frequency. The availability of hospital resources and hardware and software specifications inherently restrict the options for comfortable, long-term data collection, resulting in limited data for training machine-learning models. This mini-review examines the current patient journey, providing an overview of the current state of EEG monitoring with reduced electrodes and automated channel reduction methods. Opportunities for improving data reliability through multi-modal data fusion are suggested. We assert the need for further research in electrode reduction to advance brain monitoring solutions towards portable, reliable devices that simultaneously offer patient comfort, perform ultra-long-term monitoring and expedite the diagnosis process.
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Affiliation(s)
- Christina Maher
- School of Biomedical Engineering, Faculty of Engineering, The University of Sydney, Sydney, New South Wales 2006, Australia
- Brain and Mind Centre, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Yikai Yang
- School of Biomedical Engineering, Faculty of Engineering, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Nhan Duy Truong
- School of Biomedical Engineering, Faculty of Engineering, The University of Sydney, Sydney, New South Wales 2006, Australia
| | - Chenyu Wang
- Brain and Mind Centre, The University of Sydney, Sydney, New South Wales 2006, Australia
- Translational Research Collective, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales 2050, Australia
- Sydney Neuroimaging Analysis Centre, Camperdown, New South Wales 2050, Australia
| | - Armin Nikpour
- Brain and Mind Centre, The University of Sydney, Sydney, New South Wales 2006, Australia
- Central Clinical School, Faculty of Medicine and Health, The University of Sydney, Sydney, New South Wales 2006, Australia
- Translational Research Collective, Faculty of Medicine and Health, The University of Sydney, Camperdown, New South Wales 2050, Australia
| | - Omid Kavehei
- School of Biomedical Engineering, Faculty of Engineering, The University of Sydney, Sydney, New South Wales 2006, Australia
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14
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Goshvarpour A, Goshvarpour A. An Innovative Information-Based Strategy for Epileptic EEG Classification. Neural Process Lett 2023. [DOI: 10.1007/s11063-023-11253-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/01/2023]
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15
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Xia W, Zhang R, Zhang X, Usman M. A novel method for diagnosing Alzheimer's disease using deep pyramid CNN based on EEG signals. Heliyon 2023; 9:e14858. [PMID: 37025794 PMCID: PMC10070085 DOI: 10.1016/j.heliyon.2023.e14858] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 03/07/2023] [Accepted: 03/20/2023] [Indexed: 03/28/2023] Open
Abstract
Background The diagnosis of Alzheimer's disease (AD) using electroencephalography (EEG) has garnered more attention recently. New methods In this paper, we present a novel approach for the diagnosis of AD, in terms of classifying the resting-state EEG of AD, mild cognitive impairment (MCI), and healthy control (HC). To overcome the hurdles of limited data available and the over-fitting problem of the deep learning models, we studied overlapping sliding windows to augment the one-dimensional EEG data of 100 subjects (including 49 AD subjects, 37 MCI subjects and 14 HC subjects). After constructing the appropriate dataset, the modified DPCNN was used to classify the augmented EEG. Furthermore, the model performance was evaluated by 5 times of 5-fold cross-validation and the confusion matrix has been obtained. Results The average accuracy rate of the model for classifying AD, MCI, and HC is 97.10%, and the F1 score of the three-class classification model is 97.11%, which further proves the model's excellent performance. Conclusions Therefore, the DPCNN proposed in this paper can accurately classify the one-dimensional EEG of AD and is worthy of reference for the diagnosis of the disease.
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16
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Perez Velazquez JL, Mateos DM, Guevara R. Is the tendency to maximise energy distribution an optimal collective activity for biological purposes? A proposal for a global principle of biological organization. Heliyon 2023; 9:e15005. [PMID: 37095928 PMCID: PMC10121639 DOI: 10.1016/j.heliyon.2023.e15005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 03/06/2023] [Accepted: 03/23/2023] [Indexed: 03/31/2023] Open
Abstract
Our purpose is to address the biological problem of finding foundations of the organization in the collective activity among cell networks in the nervous system, at the meso/macroscale, giving rise to cognition and consciousness. But in doing so, we encounter another problem related to the interpretation of methods to assess the neural interactions and organization of the neurodynamics, because thermodynamic notions, which have precise meaning only under specific conditions, have been widely employed in these studies. The consequence is that apparently contradictory results appear in the literature, but these contradictions diminish upon the considerations of the specific circumstances of each experiment. After clarifying some of these controversial points and surveying some experimental results, we propose that a necessary condition for cognition/consciousness to emerge is to have available enough energy, or cellular activity; and a sufficient condition is the multiplicity of configurations in which cell networks can communicate, resulting in non-uniform energy distribution, the generation and dissipation of energy gradients due to the constant activity. The diversity of sensorimotor processing of higher animals needs a flexible, fluctuating web on neuronal connections, and we review results supporting such multiplicity of configurations among brain regions associated with conscious awareness and healthy brain states. These ideas may reveal possible fundamental principles of brain organization that could be extended to other natural phenomena and how healthy activity may derive to pathological states.
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17
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Xie Y, Zhang H, Pan Y, Chai Y. Combined effect of stimulation and electromagnetic induction on absence seizure inhibition in coupled thalamocortical circuits. Eur J Neurosci 2023; 57:867-879. [PMID: 36696966 DOI: 10.1111/ejn.15923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 01/13/2023] [Indexed: 01/27/2023]
Abstract
Deep brain stimulation (DBS) and electromagnetic induction are new techniques that are increasingly used in modern epilepsy treatments; however, the mechanism of action remains unclear. In this study, we constructed a bidirectional-coupled cortico-thalamic model, based on which we proposed three regulation schemes: isolated regulation of DBS, isolated regulation of electromagnetic induction and combined regulation of the previous two. In particular, we introduced DBS with a lower amplitude and considered the influence of electromagnetic induction caused by the transmembrane current on the membrane potential. The most striking finding of this study is that the three therapeutic schemes could effectively control abnormal discharge, and combined regulation could reduce the occurrence of epileptic seizures more effectively. The present study bridges the gap between the bidirectional coupling model and combined control. In this way, the damage induced by electrical stimulation of the patient's brain tissue could be reduced, and the abnormal physiological discharge pattern of the cerebral cortex was simultaneously regulated by different techniques. This work opens new avenues for improving brain dysfunction in patients with epilepsy, expands ideas for promoting the development of neuroscience and is meaningful for improving the health of modern society and developing the field of science.
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Affiliation(s)
- Yan Xie
- School of Mathematics and Physics, Shanghai University of Electric Power, Shanghai, China
| | - Hudong Zhang
- School of Mathematics and Physics, Shanghai University of Electric Power, Shanghai, China
| | - Yufeng Pan
- School of Mathematics and Physics, Shanghai University of Electric Power, Shanghai, China
| | - Yuan Chai
- School of Mathematics and Physics, Shanghai University of Electric Power, Shanghai, China
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18
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Fagerholm ED, Dezhina Z, Moran RJ, Turkheimer FE, Leech R. A primer on entropy in neuroscience. Neurosci Biobehav Rev 2023; 146:105070. [PMID: 36736445 DOI: 10.1016/j.neubiorev.2023.105070] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 01/16/2023] [Accepted: 01/29/2023] [Indexed: 02/04/2023]
Abstract
Entropy is not just a property of a system - it is a property of a system and an observer. Specifically, entropy is a measure of the amount of hidden information in a system that arises due to an observer's limitations. Here we provide an account of entropy from first principles in statistical mechanics with the aid of toy models of neural systems. Specifically, we describe the distinction between micro and macrostates in the context of simplified binary-state neurons and the characteristics of entropy required to capture an associated measure of hidden information. We discuss the origin of the mathematical form of entropy via the indistinguishable re-arrangements of discrete-state neurons and show the way in which the arguments are extended into a phase space description for continuous large-scale neural systems. Finally, we show the ways in which limitations in neuroimaging resolution, as represented by coarse graining operations in phase space, lead to an increase in entropy in time as per the second law of thermodynamics. It is our hope that this primer will support the increasing number of studies that use entropy as a way of characterising neuroimaging timeseries and of making inferences about brain states.
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Affiliation(s)
- Erik D Fagerholm
- Department of Neuroimaging, King's College London, United Kingdom.
| | - Zalina Dezhina
- Department of Neuroimaging, King's College London, United Kingdom
| | - Rosalyn J Moran
- Department of Neuroimaging, King's College London, United Kingdom
| | | | - Robert Leech
- Department of Neuroimaging, King's College London, United Kingdom
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19
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Khare SK, Acharya UR. An explainable and interpretable model for attention deficit hyperactivity disorder in children using EEG signals. Comput Biol Med 2023; 155:106676. [PMID: 36827785 DOI: 10.1016/j.compbiomed.2023.106676] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 01/09/2023] [Accepted: 02/13/2023] [Indexed: 02/19/2023]
Abstract
BACKGROUND Attention deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder that affects a person's sleep, mood, anxiety, and learning. Early diagnosis and timely medication can help individuals with ADHD perform daily tasks without difficulty. Electroencephalogram (EEG) signals can help neurologists to detect ADHD by examining the changes occurring in it. The EEG signals are complex, non-linear, and non-stationary. It is difficult to find the subtle differences between ADHD and healthy control EEG signals visually. Also, making decisions from existing machine learning (ML) models do not guarantee similar performance (unreliable). METHOD The paper explores a combination of variational mode decomposition (VMD), and Hilbert transform (HT) called VMD-HT to extract hidden information from EEG signals. Forty-one statistical parameters extracted from the absolute value of analytical mode functions (AMF) have been classified using the explainable boosted machine (EBM) model. The interpretability of the model is tested using statistical analysis and performance measurement. The importance of the features, channels and brain regions has been identified using the glass-box and black-box approach. The model's local and global explainability has been visualized using Local Interpretable Model-agnostic Explanations (LIME), SHapley Additive exPlanations (SHAP), Partial Dependence Plot (PDP), and Morris sensitivity. To the best of our knowledge, this is the first work that explores the explainability of the model prediction in ADHD detection, particularly for children. RESULTS Our results show that the explainable model has provided an accuracy of 99.81%, a sensitivity of 99.78%, 99.84% specificity, an F-1 measure of 99.83%, the precision of 99.87%, a false detection rate of 0.13%, and Mathew's correlation coefficient, negative predicted value, and critical success index of 99.61%, 99.73%, and 99.66%, respectively in detecting the ADHD automatically with ten-fold cross-validation. The model has provided an area under the curve of 100% while the detection rate of 99.87% and 99.73% has been obtained for ADHD and HC, respectively. CONCLUSIONS The model show that the interpretability and explainability of frontal region is highest compared to pre-frontal, central, parietal, occipital, and temporal regions. Our findings has provided important insight into the developed model which is highly reliable, robust, interpretable, and explainable for the clinicians to detect ADHD in children. Early and rapid ADHD diagnosis using robust explainable technologies may reduce the cost of treatment and lessen the number of patients undergoing lengthy diagnosis procedures.
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Affiliation(s)
- Smith K Khare
- Electrical and Computer Engineering Department, Aarhus University, 8200, Aarhus, Denmark.
| | - U Rajendra Acharya
- School of Mathematics, Physics, and Computing, University of Southern Queensland, Springfield, Australia; Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Sciences, Singapore; Department of Biomedical Informatics and Medical Engineering, Asia University, Taiwan; Kumamoto University, Japan; University of Malaya, Malaysia
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20
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Zhao X, Yoshida N, Ueda T, Sugano H, Tanaka T. Epileptic seizure detection by using interpretable machine learning models. J Neural Eng 2023; 20. [PMID: 36603215 DOI: 10.1088/1741-2552/acb089] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 01/05/2023] [Indexed: 01/06/2023]
Abstract
Objective.Accurate detection of epileptic seizures using electroencephalogram (EEG) data is essential for epilepsy diagnosis, but the visual diagnostic process for clinical experts is a time-consuming task. To improve efficiency, some seizure detection methods have been proposed. Regardless of traditional or machine learning methods, the results identify only seizures and non-seizures. Our goal is not only to detect seizures but also to explain the basis for detection and provide reference information to clinical experts.Approach.In this study, we follow the visual diagnosis mechanism used by clinical experts that directly processes plotted EEG image data and apply some commonly used models of LeNet, VGG, deep residual network (ResNet), and vision transformer (ViT) to the EEG image classification task. Before using these models, we propose a data augmentation method using random channel ordering (RCO), which adjusts the channel order to generate new images. The Gradient-weighted class activation mapping (Grad-CAM) and attention layer methods are used to interpret the models.Main results.The RCO method can balance the dataset in seizure and non-seizure classes. The models achieved good performance in the seizure detection task. Moreover, the Grad-CAM and attention layer methods explained the detection basis of the model very well and calculate a value that measures the seizure degree.Significance.Processing EEG data in the form of images can flexibility to use a variety of machine learning models. The imbalance problem that exists widely in clinical practice is well solved by the RCO method. Since the method follows the visual diagnosis mechanism of clinical experts, the model interpretation results can be presented to clinical experts intuitively, and the quantitative information provided by the model is also a good diagnostic reference.
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Affiliation(s)
- Xuyang Zhao
- Department of Electrical Engineering and Computer Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | | | - Tetsuya Ueda
- Faculty of Medicine, Juntendo University, Tokyo, Japan
| | | | - Toshihisa Tanaka
- Department of Electrical Engineering and Computer Science, Tokyo University of Agriculture and Technology, Tokyo, Japan
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21
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Vasickova Z, Klimes P, Cimbalnik J, Travnicek V, Pail M, Halamek J, Jurak P, Brazdil M. Shadows of very high-frequency oscillations can be detected in lower frequency bands of routine stereoelectroencephalography. Sci Rep 2023; 13:1065. [PMID: 36658267 PMCID: PMC9852423 DOI: 10.1038/s41598-023-27797-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 01/09/2023] [Indexed: 01/20/2023] Open
Abstract
Very high-frequency oscillations (VHFOs, > 500 Hz) are more specific in localizing the epileptogenic zone (EZ) than high-frequency oscillations (HFOs, < 500 Hz). Unfortunately, VHFOs are not visible in standard clinical stereo-EEG (SEEG) recordings with sampling rates of 1 kHz or lower. Here we show that "shadows" of VHFOs can be found in frequencies below 500 Hz and can help us to identify SEEG channels with a higher probability of increased VHFO rates. Subsequent analysis of Logistic regression models on 141 SEEG channels from thirteen patients shows that VHFO "shadows" provide additional information to gold standard HFO analysis and can potentially help in precise EZ delineation in standard clinical recordings.
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Affiliation(s)
- Zuzana Vasickova
- Brno Epilepsy Center, Department of Neurology, St. Anne's University Hospital, Faculty of Medicine, Masaryk University, Brno, Czech Republic.,Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic
| | - Petr Klimes
- Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic.
| | - Jan Cimbalnik
- International Clinical Research Center, St. Anne's University Hospital, Brno, Czech Republic
| | - Vojtech Travnicek
- International Clinical Research Center, St. Anne's University Hospital, Brno, Czech Republic.,Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic
| | - Martin Pail
- Brno Epilepsy Center, Department of Neurology, St. Anne's University Hospital, Faculty of Medicine, Masaryk University, Brno, Czech Republic.,International Clinical Research Center, St. Anne's University Hospital, Brno, Czech Republic.,Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic
| | - Josef Halamek
- Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic
| | - Pavel Jurak
- Institute of Scientific Instruments, The Czech Academy of Sciences, Brno, Czech Republic
| | - Milan Brazdil
- Brno Epilepsy Center, Department of Neurology, St. Anne's University Hospital, Faculty of Medicine, Masaryk University, Brno, Czech Republic.,Behavioral and Social Neuroscience Research Group, CEITEC Central European Institute of Technology, Masaryk University, Brno, Czech Republic
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22
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Goel S, Agrawal R, Bharti R. Epileptic seizure prediction and classification based on statistical features using LSTM fully connected neural network. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2023. [DOI: 10.3233/jifs-222745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Epilepsy, the most common neurological disorder by which over 65 million people are affected across the world. Recent research has shown a very large interest to predict and diagnose epilepsy well before time. The continuous monitoring of EEG signals for seizure detection in electroencephalogram (EEG) is a very tedious and time taking process and therefore requires a qualified and trained clinical specialist. This paper presents a novel approach to detect and predict the epileptic signal in the recorded electroencephalogram (EEG). There is always a requirement for a nonlinear technique to examine the EEG signals due to the random nature of EEG signals. Therefore, we are providing an alternate method that extracts various entropy measures such Sample Entropy, Spectral Entropy, Permutation Entropy, and Shannon Entropy as statistical features from EEG signal. Based on these extracted features LSTM Fully connected Neural Network is used to classify the EEG signal as Focal and Non-focal. The proposed method gives a new insight into EEG signals by providing sensitivity as an added measure using deep learning along with accuracy and precision.
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Affiliation(s)
- Sachin Goel
- Veer Madho Singh Bhandari Uttarakhand Technical University, Dehradun, India
| | - Rajeev Agrawal
- Lloyd Institute of Engineering & Technology, Greater Noida, India
| | - R.K. Bharti
- Bipin Tripathi Kumaon Institute of Technology, Dwarahat, Uttarakhand, India
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23
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Detection of Parkinson's disease from EEG signals using discrete wavelet transform, different entropy measures, and machine learning techniques. Sci Rep 2022; 12:22547. [PMID: 36581646 PMCID: PMC9800369 DOI: 10.1038/s41598-022-26644-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 12/19/2022] [Indexed: 12/30/2022] Open
Abstract
Early detection of Parkinson's disease (PD) is very important in clinical diagnosis for preventing disease development. In this study, we present efficient discrete wavelet transform (DWT)-based methods for detecting PD from health control (HC) in two cases, namely, off-and on-medication. First, the EEG signals are preprocessed to remove major artifacts before being decomposed into several EEG sub-bands (approximate and details) using DWT. The features are then extracted from the wavelet packet-derived reconstructed signals using different entropy measures, namely, log energy entropy, Shannon entropy, threshold entropy, sure entropy, and norm entropy. Several machine learning techniques are investigated to classify the resulting PD/HC features. The effects of DWT coefficients and brain regions on classification accuracy are being investigated as well. Two public datasets are used to verify the proposed methods: the SanDiego dataset (31 subjects, 93 min) and the UNM dataset (54 subjects, 54 min). The results are promising and show that four entropy measures: log energy entropy, threshold entropy, sure entropy, and modified-Shannon entropy (TShEn) lead to high classification accuracy, indicating they are good biomarkers for PD detection. With the SanDiego dataset, the classification results of off-medication PD versus HC are 99.89, 99.87, and 99.91 for accuracy, sensitivity, and specificity, respectively, using the combination of DWT + TShEn and KNN classifier. Using the same combination, the results of on-medication PD versus HC are 94.21, 93.33, and 95%. With the UNM dataset, the obtained classification accuracy is around 99.5% in both cases of off-and on-medication PD using DWT + TShEn + SVM and DWT + ThEn + KNN, respectively. The results also demonstrate the importance of all DWT coefficients and that selecting a suitable small number of EEG channels from several brain regions could improve the classification accuracy.
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24
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Lau ZJ, Pham T, Chen SHA, Makowski D. Brain entropy, fractal dimensions and predictability: A review of complexity measures for EEG in healthy and neuropsychiatric populations. Eur J Neurosci 2022; 56:5047-5069. [PMID: 35985344 PMCID: PMC9826422 DOI: 10.1111/ejn.15800] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 07/20/2022] [Accepted: 08/10/2022] [Indexed: 01/11/2023]
Abstract
There has been an increasing trend towards the use of complexity analysis in quantifying neural activity measured by electroencephalography (EEG) signals. On top of revealing complex neuronal processes of the brain that may not be possible with linear approaches, EEG complexity measures have also demonstrated their potential as biomarkers of psychopathology such as depression and schizophrenia. Unfortunately, the opacity of algorithms and descriptions originating from mathematical concepts have made it difficult to understand what complexity is and how to draw consistent conclusions when applied within psychology and neuropsychiatry research. In this review, we provide an overview and entry-level explanation of existing EEG complexity measures, which can be broadly categorized as measures of predictability and regularity. We then synthesize complexity findings across different areas of psychological science, namely, in consciousness research, mood and anxiety disorders, schizophrenia, neurodevelopmental and neurodegenerative disorders, as well as changes across the lifespan, while addressing some theoretical and methodological issues underlying the discrepancies in the data. Finally, we present important considerations when choosing and interpreting these metrics.
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Affiliation(s)
- Zen J. Lau
- School of Social SciencesNanyang Technological UniversitySingapore
| | - Tam Pham
- School of Social SciencesNanyang Technological UniversitySingapore
| | - S. H. Annabel Chen
- School of Social SciencesNanyang Technological UniversitySingapore,Centre for Research and Development in LearningNanyang Technological UniversitySingapore,Lee Kong Chian School of MedicineNanyang Technological UniversitySingapore,National Institute of EducationNanyang Technological UniversitySingapore
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25
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Escobar-Ipuz F, Torres A, García-Jiménez M, Basar C, Cascón J, Mateo J. Prediction of patients with idiopathic generalized epilepsy from healthy controls using machine learning from scalp EEG recordings. Brain Res 2022; 1798:148131. [DOI: 10.1016/j.brainres.2022.148131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 10/14/2022] [Accepted: 10/23/2022] [Indexed: 11/05/2022]
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26
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Suhail T, Indiradevi K, Suhara E, Poovathinal SA, Ayyappan A. Distinguishing cognitive states using electroencephalography local activation and functional connectivity patterns. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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27
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Romero Milà B, Remakanthakurup Sindhu K, Mytinger JR, Shrey DW, Lopour BA. EEG biomarkers for the diagnosis and treatment of infantile spasms. Front Neurol 2022; 13:960454. [PMID: 35968272 PMCID: PMC9366674 DOI: 10.3389/fneur.2022.960454] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 06/28/2022] [Indexed: 11/13/2022] Open
Abstract
Early diagnosis and treatment are critical for young children with infantile spasms (IS), as this maximizes the possibility of the best possible child-specific outcome. However, there are major barriers to achieving this, including high rates of misdiagnosis or failure to recognize the seizures, medication failure, and relapse. There are currently no validated tools to aid clinicians in assessing objective diagnostic criteria, predicting or measuring medication response, or predicting the likelihood of relapse. However, the pivotal role of EEG in the clinical management of IS has prompted many recent studies of potential EEG biomarkers of the disease. These include both visual EEG biomarkers based on human visual interpretation of the EEG and computational EEG biomarkers in which computers calculate quantitative features of the EEG. Here, we review the literature on both types of biomarkers, organized based on the application (diagnosis, treatment response, prediction, etc.). Visual biomarkers include the assessment of hypsarrhythmia, epileptiform discharges, fast oscillations, and the Burden of AmplitudeS and Epileptiform Discharges (BASED) score. Computational markers include EEG amplitude and power spectrum, entropy, functional connectivity, high frequency oscillations (HFOs), long-range temporal correlations, and phase-amplitude coupling. We also introduce each of the computational measures and provide representative examples. Finally, we highlight remaining gaps in the literature, describe practical guidelines for future biomarker discovery and validation studies, and discuss remaining roadblocks to clinical implementation, with the goal of facilitating future work in this critical area.
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Affiliation(s)
- Blanca Romero Milà
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, United States
- Department of Electronics and Biomedical Engineering, Universitat de Barcelona, Barcelona, Spain
| | | | - John R. Mytinger
- Division of Pediatric Neurology, Department of Pediatrics, Nationwide Children's Hospital, The Ohio State University, Columbus, OH, United States
| | - Daniel W. Shrey
- Division of Neurology, Children's Hospital Orange County, Orange, CA, United States
- Department of Pediatrics, University of California, Irvine, Irvine, CA, United States
| | - Beth A. Lopour
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, United States
- *Correspondence: Beth A. Lopour
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Survey of Machine Learning Techniques in the Analysis of EEG Signals for Parkinson’s Disease: A Systematic Review. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12146967] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Background: Parkinson’s disease (PD) affects 7–10 million people worldwide. Its diagnosis is clinical and can be supported by image-based tests, which are expensive and not always accessible. Electroencephalograms (EEG) are non-invasive, widely accessible, low-cost tests. However, the signals obtained are difficult to analyze visually, so advanced techniques, such as Machine Learning (ML), need to be used. In this article, we review those studies that consider ML techniques to study the EEG of patients with PD. Methods: The review process was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, which are used to provide quality standards for the objective evaluation of various studies. All publications before February 2022 were included, and their main characteristics and results were evaluated and documented through three key points associated with the development of ML techniques: dataset quality, data preprocessing, and model evaluation. Results: 59 studies were included. The predominating models were Support Vector Machine (SVM) and Artificial Neural Networks (ANNs). In total, 31 articles diagnosed PD with a mean accuracy of 97.35 ± 3.46%. There was no standard cleaning protocol for EEG and a great heterogeneity in EEG characteristics was shown, although spectral features predominated by 88.37%. Conclusions: Neither the cleaning protocol nor the number of EEG channels influenced the classification results. A baseline value was provided for the PD diagnostic problem, although recent studies focus on the identification of cognitive impairment.
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EEG Oscillatory Power and Complexity for Epileptic Seizure Detection. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094181] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Monitoring patients at risk of epileptic seizure is critical for optimal treatment and ensuing the reduction of seizure risk and complications. In general, seizure detection is done manually in hospitals and involves time-consuming visual inspection and interpretation by experts of electroencephalography (EEG) recordings. The purpose of this study is to investigate the pertinence of band-limited spectral power and signal complexity in order to discriminate between seizure and seizure-free EEG brain activity. The signal complexity and spectral power are evaluated in five frequency intervals, namely, the delta, theta, alpha, beta, and gamma bands, to be used as EEG signal feature representation. Classification of seizure and seizure-free data was performed by prevalent potent classifiers. Substantial comparative performance evaluation experiments were performed on a large EEG data record of 341 patients in the Temple University Hospital EEG seizure database. Based on statistically validated criteria, results show the efficiency of band-limited spectral power and signal complexity when using random forest and gradient-boosting decision tree classifiers (95% of the area under the curve (AUC) and 91% for both F-measure and accuracy). These results support the use of these automatic classification schemes to assist the practicing neurologist interpret EEG records more accurately and without tedious visual inspection.
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Parkinson’s Disease Detection from Resting-State EEG Signals Using Common Spatial Pattern, Entropy, and Machine Learning Techniques. Diagnostics (Basel) 2022; 12:diagnostics12051033. [PMID: 35626189 PMCID: PMC9139946 DOI: 10.3390/diagnostics12051033] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Revised: 04/08/2022] [Accepted: 04/18/2022] [Indexed: 02/04/2023] Open
Abstract
Parkinson’s disease (PD) is a very common brain abnormality that affects people all over the world. Early detection of such abnormality is critical in clinical diagnosis in order to prevent disease progression. Electroencephalography (EEG) is one of the most important PD diagnostic tools since this disease is linked to the brain. In this study, novel efficient common spatial pattern-based approaches for detecting Parkinson’s disease in two cases, off–medication and on–medication, are proposed. First, the EEG signals are preprocessed to remove major artifacts before spatial filtering using a common spatial pattern. Several features are extracted from spatially filtered signals using different metrics, namely, variance, band power, energy, and several types of entropy. Machine learning techniques, namely, random forest, linear/quadratic discriminant analysis, support vector machine, and k-nearest neighbor, are investigated to classify the extracted features. The impacts of frequency bands, segment length, and reduction number on the results are also investigated in this work. The proposed methods are tested using two EEG datasets: the SanDiego dataset (31 participants, 93 min) and the UNM dataset (54 participants, 54 min). The results show that the proposed methods, particularly the combination of common spatial patterns and log energy entropy, provide competitive results when compared to methods in the literature. The achieved results in terms of classification accuracy, sensitivity, and specificity in the case of off-medication PD detection are around 99%. In the case of on-medication PD, the results range from 95% to 98%. The results also reveal that features extracted from the alpha and beta bands have the highest classification accuracy.
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Fujita Y, Yanagisawa T, Fukuma R, Ura N, Oshino S, Kishima H. Abnormal phase-amplitude coupling characterizes the interictal state in epilepsy. J Neural Eng 2022; 19. [PMID: 35385832 DOI: 10.1088/1741-2552/ac64c4] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 04/05/2022] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Diagnosing epilepsy still requires visual interpretation of electroencephalography and magnetoencephalography (MEG) by specialists, which prevents quantification and standardization of diagnosis. Previous studies proposed automated diagnosis by combining various features from electroencephalography and MEG, such as relative power (Power) and functional connectivity. However, the usefulness of interictal phase-amplitude coupling (PAC) in diagnosing epilepsy is still unknown. We hypothesized that resting-state PAC would be different for patients with epilepsy in the interictal state and for healthy participants such that it would improve discrimination between the groups. METHODS We obtained resting-state MEG and magnetic resonance imaging in 90 patients with epilepsy during their preoperative evaluation and in 90 healthy participants. We used the cortical currents estimated from MEG and magnetic resonance imaging to calculate Power in the δ (1-3 Hz), θ (4-7 Hz), α (8-13 Hz), β (13-30 Hz), low γ (35-55 Hz), and high γ (65-90 Hz) bands and functional connectivity in the θ band. PAC was evaluated using the synchronization index (SI) for eight frequency band pairs: the phases of δ, θ, α, and β and the amplitudes of low and high γ. First, we compared the mean SI values for the patients with epilepsy and the healthy participants. Then, using features such as PAC, Power, functional connectivity, and features extracted by deep learning individually or combined, we tested whether PAC improves discrimination accuracy for the two groups. RESULTS The mean SI values were significantly different for the patients with epilepsy and the healthy participants. The SI value difference was highest for θ/low γ in the temporal lobe. Discrimination accuracy was the highest, at 90%, using the combination of PAC and deep learning. SIGNIFICANCE Abnormal PAC characterized the patients with epilepsy in the interictal state compared with the healthy participants, potentially improving the discrimination of epilepsy.
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Affiliation(s)
- Yuya Fujita
- Institute for Advanced co-creation studies, Osaka University, 2-2 Yamadaoka Suita Osaka Japan, Suita, 565-0871, JAPAN
| | - Takufumi Yanagisawa
- Institute for Advanced co-creation studies, Osaka University, 2-2 Yamadaoka Suita Osaka Japan, Suita, 565-0871, JAPAN
| | - Ryohei Fukuma
- Institute for Advanced co-creation studies, Osaka University, 2-2 Yamadaoka Suita Osaka Japan, Suita, 565-0871, JAPAN
| | - Natsuko Ura
- Institute for Advanced co-creation studies, Osaka University, 2-2 Yamadaoka Suita Osaka Japan, Suita, 565-0871, JAPAN
| | - Satoru Oshino
- Department of Neurosurgery, Osaka University Faculty of Medicine Graduate School of Medicine, 2-2 Yamadaoka, suita, Osaka, Japan, Osaka University Graduate School of Medicine, Dept of Neurosurgery, Osaka, Osaka, 5670871, JAPAN
| | - Haruhiko Kishima
- Department of neurosurgery, Osaka University, 2-2, Yamadaoka, Suita, Suita, Osaka, 5650871, JAPAN
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Shah SY, Larijani H, Gibson RM, Liarokapis D. Random Neural Network Based Epileptic Seizure Episode Detection Exploiting Electroencephalogram Signals. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22072466. [PMID: 35408080 PMCID: PMC9002775 DOI: 10.3390/s22072466] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 03/14/2022] [Accepted: 03/17/2022] [Indexed: 06/12/2023]
Abstract
Epileptic seizures are caused by abnormal electrical activity in the brain that manifests itself in a variety of ways, including confusion and loss of awareness. Correct identification of epileptic seizures is critical in the treatment and management of patients with epileptic disorders. One in four patients present resistance against seizures episodes and are in dire need of detecting these critical events through continuous treatment in order to manage the specific disease. Epileptic seizures can be identified by reliably and accurately monitoring the patients' neuro and muscle activities, cardiac activity, and oxygen saturation level using state-of-the-art sensing techniques including electroencephalograms (EEGs), electromyography (EMG), electrocardiograms (ECGs), and motion or audio/video recording that focuses on the human head and body. EEG analysis provides a prominent solution to distinguish between the signals associated with epileptic episodes and normal signals; therefore, this work aims to leverage on the latest EEG dataset using cutting-edge deep learning algorithms such as random neural network (RNN), convolutional neural network (CNN), extremely random tree (ERT), and residual neural network (ResNet) to classify multiple variants of epileptic seizures from non-seizures. The results obtained highlighted that RNN outperformed all other algorithms used and provided an overall accuracy of 97%, which was slightly improved after cross validation.
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Affiliation(s)
- Syed Yaseen Shah
- School of Computing, Engineering and Built Environment, Glasgow Caledonian University, Glasgow G4 0BA, UK; (R.M.G.); (D.L.)
| | - Hadi Larijani
- SMART Technology Research Centre, Glasgow Caledonian University, Cowcaddens Road, Glasgow G4 0BA, UK
| | - Ryan M. Gibson
- School of Computing, Engineering and Built Environment, Glasgow Caledonian University, Glasgow G4 0BA, UK; (R.M.G.); (D.L.)
| | - Dimitrios Liarokapis
- School of Computing, Engineering and Built Environment, Glasgow Caledonian University, Glasgow G4 0BA, UK; (R.M.G.); (D.L.)
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A novel 2-piece rose spiral curve model: Application in epileptic EEG classification. Comput Biol Med 2022; 142:105240. [DOI: 10.1016/j.compbiomed.2022.105240] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 01/17/2022] [Accepted: 01/17/2022] [Indexed: 11/18/2022]
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U. R, Neelappa N, H.M. H. Automatic diseases detection and classification of EEG signal with pervasive computing using machine learning. INTERNATIONAL JOURNAL OF PERVASIVE COMPUTING AND COMMUNICATIONS 2022. [DOI: 10.1108/ijpcc-09-2021-0216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Purpose
The natural control, feedback, stimuli and protection of these subsequent principles founded this project. Via properly conducted experiments, a multilayer computer rehabilitation system was created that integrated natural interaction assisted by electroencephalogram (EEG), which enabled the movements in the virtual environment and real wheelchair. For blind wheelchair operator patients, this paper involved of expounding the proper methodology. For educating the value of life and independence of blind wheelchair users, outcomes have proven that virtual reality (VR) with EEG signals has that potential.
Design/methodology/approach
Individuals face numerous challenges with many disorders, particularly when multiple dysfunctions are diagnosed and especially for visually effected wheelchair users. This scenario, in reality, creates in a degree of incapacity on the part of the wheelchair user in terms of performing simple activities. Based on their specific medical needs, confined patients are treated in a modified method. Independent navigation is secured for individuals with vision and motor disabilities. There is a necessity for communication which justifies the use of VR in this navigation situation. For the effective integration of locomotion besides, it must be under natural guidance. EEG, which uses random brain impulses, has made significant progress in the field of health. The custom of an automated audio announcement system modified to have the help of VR and EEG for the training of locomotion and individualized interaction of wheelchair users with visual disability is demonstrated in this study through an experiment. Enabling the patients who were otherwise deemed incapacitated to participate in social activities, as the aim was to have efficient connections.
Findings
To protect their life straightaway and to report all these disputes, the military system should have high speed, more precise portable prototype device for nursing the soldier health, recognition of solider location and report about health sharing system to the concerned system. Field programmable gate array (FPGA)-based soldier’s health observing and position gratitude system is proposed in this paper. Reliant on heart rate which is centered on EEG signals, the soldier’s health is observed on systematic bases. By emerging Verilog hardware description language (HDL) programming language and executing on Artix-7 development FPGA board of part name XC7ACSG100t the whole work is approved in a Vivado Design Suite. Classification of different abnormalities and cloud storage of EEG along with the type of abnormalities, artifact elimination, abnormalities identification based on feature extraction, exist in the segment of suggested architecture. Irregularity circumstances are noticed through developed prototype system and alert the physically challenged (PHC) individual via an audio announcement. An actual method for eradicating motion artifacts from EEG signals that have anomalies in the PHC person’s brain has been established, and the established system is a portable device that can deliver differences in brain signal variation intensity. Primarily the EEG signals can be taken and the undesirable artifact can be detached, later structures can be mined by discrete wavelet transform these are the two stages through which artifact deletion can be completed. The anomalies in signal can be noticed and recognized by using machine learning algorithms known as multirate support vector machine classifiers when the features have been extracted using a combination of hidden Markov model (HMM) and Gaussian mixture model (GMM). Intended for capable declaration about action taken by a blind person, these result signals are protected in storage devices and conveyed to the controller. Pretending daily motion schedules allows the pretentious EEG signals to be caught. Aimed at the validation of planned system, the database can be used and continued with numerous recorded signals of EEG. The projected strategy executes better in terms of re-storing theta, delta, alpha and beta complexes of the original EEG with less alteration and a higher signal to noise ratio (SNR) value of the EEG signal, which illustrates in the quantitative analysis. The projected method used Verilog HDL and MATLAB software for both formation and authorization of results to yield improved results. Since from the achieved results, it is initiated that 32% enhancement in SNR, 14% in mean squared error (MSE) and 65% enhancement in recognition of anomalies, hence design is effectively certified and proved for standard EEG signals data sets on FPGA.
Originality/value
The proposed system can be used in military applications as it is high speed and excellent precise in terms of identification of abnormality, the developed system is portable and very precise. FPGA-based soldier’s health observing and position gratitude system is proposed in this paper. Reliant on heart rate which is centered on EEG signals the soldier health is observed in systematic bases. The proposed system is developed using Verilog HDL programming language and executing on Artix-7 development FPGA board of part name XC7ACSG100t and synthesised using in Vivado Design Suite software tool.
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Extracting Epileptic Features in EEGs Using a Dual-Tree Complex Wavelet Transform Coupled with a Classification Algorithm. Brain Res 2022; 1779:147777. [PMID: 34999060 DOI: 10.1016/j.brainres.2022.147777] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 12/07/2021] [Accepted: 01/02/2022] [Indexed: 11/24/2022]
Abstract
The detection of epileptic seizures from electroencephalogram (EEG) signals is traditionally performed by clinical experts through visual inspection. It is a long process, is error prone, and requires a highly trained expert. In this research, a new method is presented for seizure classification for EEG signals using a dual-tree complex wavelet transform (DT-CWT) and fast Fourier transform (FFT) coupled with a least square support vector machine (LS-SVM) classifier. In this method, each EEG signal is divided into four segments. Each segment is further split into smaller sub-segments. The DT-CWT is applied to decompose each sub-segment into detailed and approximation coefficients (real and imaginary parts). The obtained coefficients by the DT-CWT at each decomposition level are passed through an FFT to identify the relevant frequency bands. Finally, a set of effective features are extracted from the sub-segments, and are then forwarded to the LS-SVM classifier to classify epileptic EEGs. In this paper, two epileptic EEG databases from Bonn and Bern Universities are used to evaluate the extracted features using the proposed method. The experimental results demonstrate that the method obtained an average accuracy of 97.7% and 96.8% for the Bonn and Bern databases, respectively. The results prove that the proposed DT-CWT and FFT based features extraction is an effective way to extract discriminative information from brain signals. The obtained results are also compared to those by k-means and Naïve Bayes classifiers as well as with the results from the previous methods reported for classifying epileptic seizures and identifying the focal and non-focal EEG signals. The obtained results show that the proposed method outperforms the others and it is effective in detecting epileptic seziures in EEG signals. The technique can be adopted to aid neurologists to better diagnose neurological disorders and for an early seizure warning system.
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Cherian R, Kanaga EG. Theoretical and Methodological Analysis of EEG based Seizure Detection and Prediction: An Exhaustive Review. J Neurosci Methods 2022; 369:109483. [DOI: 10.1016/j.jneumeth.2022.109483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 01/13/2022] [Accepted: 01/13/2022] [Indexed: 02/07/2023]
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Al-Ezzi A, Al-Shargabi AA, Al-Shargie F, Zahary AT. Complexity Analysis of EEG in Patients With Social Anxiety Disorder Using Fuzzy Entropy and Machine Learning Techniques. IEEE ACCESS 2022; 10:39926-39938. [DOI: 10.1109/access.2022.3165199] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Affiliation(s)
- Abdulhakim Al-Ezzi
- Electrical and Electronic Engineering Department, Centre for Intelligent Signal and Imaging Research (CISIR), Universiti Teknologi PETRONAS, Bandar, Seri Iskandar, Perak, Malaysia
| | - Amal A. Al-Shargabi
- Department of Information Technology, College of Computer, Qassim University, Buraydah, Saudi Arabia
| | - Fares Al-Shargie
- Department of Electrical Engineering, American University of Sharjah, Sharjah, United Arab Emirates
| | - Ammar T. Zahary
- Department of Computer Science, Faculty of Computing and IT, University of Science and Technology, Sana’a, Yemen
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38
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A hybrid machine learning model for classifying time series. Neural Comput Appl 2022. [DOI: 10.1007/s00521-021-06457-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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39
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Catherine Joy R, Thomas George S, Albert Rajan A, Subathra MSP. Detection of ADHD From EEG Signals Using Different Entropy Measures and ANN. Clin EEG Neurosci 2022; 53:12-23. [PMID: 34424101 DOI: 10.1177/15500594211036788] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Attention deficit hyperactivity disorder (ADHD) is a prevalent behavioral, cognitive, neurodevelopmental pediatric disorder. Clinical evaluations, symptom surveys, and neuropsychological assessments are some of the ADHD assessment methods, which are time-consuming processes and have a certain degree of uncertainty. This research investigates an efficient computer-aided technological solution for detecting ADHD from the acquired electroencephalography (EEG) signals based on different nonlinear entropy estimators and an artificial neural network classifier. Features extracted through fuzzy entropy, log energy entropy, permutation entropy, SURE entropy, and Shannon entropy are analyzed for effective discrimination of ADHD subjects from the control group. The experimented results confirm that the proposed techniques can effectively detect and classify ADHD subjects. The permutation entropy gives the highest classification accuracy of 99.82%, sensitivity of 98.21%, and specificity of 98.82%. Also, the potency of different entropy estimators derived from the t-test reflects that the Shannon entropy has a higher P-value (>.001); therefore, it has a limited scope than other entropy estimators for ADHD diagnosis. Furthermore, the considerable variance found from potential features obtained in the frontal polar (FP) and frontal (F) lobes using different entropy estimators under the eyes-closed condition shows that the signals received in these lobes will have more significance in distinguishing ADHD from normal subjects.
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Affiliation(s)
- R Catherine Joy
- Department of Electronics and Communication Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India
| | - S Thomas George
- Department of Biomedical Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India
| | - A Albert Rajan
- Department of Electrical and Electronics Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India
| | - M S P Subathra
- Department of Electrical and Electronics Engineering, Karunya Institute of Technology and Sciences, Coimbatore, India
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Al-Hadeethi H, Abdulla S, Diykh M, Green JH. Determinant of Covariance Matrix Model Coupled with AdaBoost Classification Algorithm for EEG Seizure Detection. Diagnostics (Basel) 2021; 12:74. [PMID: 35054242 PMCID: PMC8774996 DOI: 10.3390/diagnostics12010074] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 12/21/2021] [Accepted: 12/25/2021] [Indexed: 11/17/2022] Open
Abstract
Experts usually inspect electroencephalogram (EEG) recordings page-by-page in order to identify epileptic seizures, which leads to heavy workloads and is time consuming. However, the efficient extraction and effective selection of informative EEG features is crucial in assisting clinicians to diagnose epilepsy accurately. In this paper, a determinant of covariance matrix (Cov-Det) model is suggested for reducing EEG dimensionality. First, EEG signals are segmented into intervals using a sliding window technique. Then, Cov-Det is applied to each interval. To construct a features vector, a set of statistical features are extracted from each interval. To eliminate redundant features, the Kolmogorov-Smirnov (KST) and Mann-Whitney U (MWUT) tests are integrated, the extracted features ranked based on KST and MWUT metrics, and arithmetic operators are adopted to construe the most pertinent classified features for each pair in the EEG signal group. The selected features are then fed into the proposed AdaBoost Back-Propagation neural network (AB_BP_NN) to effectively classify EEG signals into seizure and free seizure segments. Finally, the AB_BP_NN is compared with several classical machine learning techniques; the results demonstrate that the proposed mode of AB_BP_NN provides insignificant false positive rates, simpler design, and robustness in classifying epileptic signals. Two datasets, the Bern-Barcelona and Bonn datasets, are used for performance evaluation. The proposed technique achieved an average accuracy of 100% and 98.86%, respectively, for the Bern-Barcelona and Bonn datasets, which is considered a noteworthy improvement compared to the current state-of-the-art methods.
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Affiliation(s)
- Hanan Al-Hadeethi
- School of Sciences, University of Southern Queensland, Toowoomba, QLD 4300, Australia;
| | - Shahab Abdulla
- USQ College, University of Southern Queensland, Toowoomba, QLD 4300, Australia
| | - Mohammed Diykh
- College of Education for Pure Science, University of Thi-Qar, Nasiriyah 64001, Iraq
- Information and Communication Technology Research Group, Scientific Research Centre, Al-Ayen University, Nasiriyah 64001, Iraq
| | - Jonathan H. Green
- USQ College, University of Southern Queensland, Toowoomba, QLD 4300, Australia
- Faculty of the Humanities, University of the Free State, Bloemfontein 9301, South Africa
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Hao C, Wang R, Li M, Ma C, Cai Q, Gao Z. Convolutional neural network based on recurrence plot for EEG recognition. CHAOS (WOODBURY, N.Y.) 2021; 31:123120. [PMID: 34972327 DOI: 10.1063/5.0062242] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2021] [Accepted: 12/03/2021] [Indexed: 06/14/2023]
Abstract
Electroencephalogram (EEG) is a typical physiological signal. The classification of EEG signals is of great significance to human beings. Combining recurrence plot and convolutional neural network (CNN), we develop a novel method for classifying EEG signals. We select two typical EEG signals, namely, epileptic EEG and fatigue driving EEG, to verify the effectiveness of our method. We construct recurrence plots from EEG signals. Then, we build a CNN framework to classify the EEG signals under different brain states. For the classification of epileptic EEG signals, we design three different experiments to evaluate the performance of our method. The results suggest that the proposed framework can accurately distinguish the normal state and the seizure state of epilepsy. Similarly, for the classification of fatigue driving EEG signals, the method also has a good classification accuracy. In addition, we compare with the existing methods, and the results show that our method can significantly improve the detection results.
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Affiliation(s)
- Chongqing Hao
- School of Electrical Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei 050018, China
| | - Ruiqi Wang
- School of Electrical Engineering, Hebei University of Science and Technology, Shijiazhuang, Hebei 050018, China
| | - Mengyu Li
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
| | - Chao Ma
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
| | - Qing Cai
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
| | - Zhongke Gao
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China
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Lazazzera R, Laguna P, Gil E, Carrault G. Proposal for a Home Sleep Monitoring Platform Employing a Smart Glove. SENSORS 2021; 21:s21237976. [PMID: 34883979 PMCID: PMC8659764 DOI: 10.3390/s21237976] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 11/21/2021] [Accepted: 11/23/2021] [Indexed: 11/16/2022]
Abstract
The present paper proposes the design of a sleep monitoring platform. It consists of an entire sleep monitoring system based on a smart glove sensor called UpNEA worn during the night for signals acquisition, a mobile application, and a remote server called AeneA for cloud computing. UpNEA acquires a 3-axis accelerometer signal, a photoplethysmography (PPG), and a peripheral oxygen saturation (SpO2) signal from the index finger. Overnight recordings are sent from the hardware to a mobile application and then transferred to AeneA. After cloud computing, the results are shown in a web application, accessible for the user and the clinician. The AeneA sleep monitoring activity performs different tasks: sleep stages classification and oxygen desaturation assessment; heart rate and respiration rate estimation; tachycardia, bradycardia, atrial fibrillation, and premature ventricular contraction detection; and apnea and hypopnea identification and classification. The PPG breathing rate estimation algorithm showed an absolute median error of 0.5 breaths per minute for the 32 s window and 0.2 for the 64 s window. The apnea and hypopnea detection algorithm showed an accuracy (Acc) of 75.1%, by windowing the PPG in one-minute segments. The classification task revealed 92.6% Acc in separating central from obstructive apnea, 83.7% in separating central apnea from central hypopnea and 82.7% in separating obstructive apnea from obstructive hypopnea. The novelty of the integrated algorithms and the top-notch cloud computing products deployed, encourage the production of the proposed solution for home sleep monitoring.
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Affiliation(s)
- Remo Lazazzera
- Laboratoire Traitement du Signal et de l’Image (LTSI-Inserm UMR 1099), Université de Rennes 1, 35000 Rennes, France;
| | - Pablo Laguna
- Biomedical Signal Interpretation and Computational Simulation (BSICoS) Group, I3A, IIS Aragón, University of Zaragoza, and with the CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 50018 Zaragoza, Spain; (P.L.); (E.G.)
| | - Eduardo Gil
- Biomedical Signal Interpretation and Computational Simulation (BSICoS) Group, I3A, IIS Aragón, University of Zaragoza, and with the CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 50018 Zaragoza, Spain; (P.L.); (E.G.)
| | - Guy Carrault
- Laboratoire Traitement du Signal et de l’Image (LTSI-Inserm UMR 1099), Université de Rennes 1, 35000 Rennes, France;
- Correspondence:
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Hazra S, Pratap AA, Agrawal O, Nandy A. On effective cognitive state classification using novel feature extraction strategies. Cogn Neurodyn 2021; 15:1125-1155. [PMID: 34790272 DOI: 10.1007/s11571-021-09688-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 04/26/2021] [Accepted: 05/31/2021] [Indexed: 11/28/2022] Open
Abstract
Investigating new features for human cognitive state classification is an intiguing area of research with Electroencephalography (EEG) based signal analysis. We plan to develop a cost-effective system for cognitive state classification using ambulatory EEG signals. A novel event driven environment is created using external stimuli for capturing EEG data using a 14-channel Emotiv neuro-headset. A new feature extraction method, Gammatone Cepstrum Coefficients (GTCC) is introduced for ambulatory EEG signal analysis. The efficacy of this technique is compared with other feature extraction methods such as Discrete Wavelet Transformation (DWT) and Mel-Frequency Cepstral Coefficients (MFCC) using statistical metrics such as Fisher Discriminant Ratio (FDR) and Logistic Regression (LR). We obtain higher values for GTCC features, demonstrating its discriminative power during classification. A superior performance is achieved for the EEG dataset with a novel ensemble feature space comprising of GTCC and MFCC. Furthermore, the ensemble feature sets are passed through a proposed 1D Convolution Neural Networks (CNN) model to extract novel features. Various classification models like Probabilistic neural network (P-NN), Linear Discriminant Analysis (LDA), Multi-Class Support Vector Machine (MCSVM), Decision Tree (DT), Random Forest (RF) and Deep Convolutional Generative Adversarial Network (DCGAN) are employed to observe best accuracy on extracted features. The proposed GTCC, (GTCC+MFCC) & (GTCC +MFCC +CNN) features outperform the state-of-the-art techniques for all cases in our work. With GTCC+MFCC feature space and GTCC+MFCC+CNN features, accuracies of 96.42% and 96.14% are attained with the DCGAN classifier. Higher classification accuracies of the proposed system makes it a cynosure in the field of cognitive science.
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Affiliation(s)
- Sumit Hazra
- Machine Intelligence and Bio-Motion Research Lab, Department of Computer Science and Engineering, NIT Rourkela, Rourkela, Odisha India
| | - Acharya Aditya Pratap
- Machine Intelligence and Bio-Motion Research Lab, Department of Computer Science and Engineering, NIT Rourkela, Rourkela, Odisha India
| | - Oshin Agrawal
- Machine Intelligence and Bio-Motion Research Lab, Department of Computer Science and Engineering, NIT Rourkela, Rourkela, Odisha India
| | - Anup Nandy
- Machine Intelligence and Bio-Motion Research Lab, Department of Computer Science and Engineering, NIT Rourkela, Rourkela, Odisha India
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Flood MW, Grimm B. EntropyHub: An open-source toolkit for entropic time series analysis. PLoS One 2021; 16:e0259448. [PMID: 34735497 PMCID: PMC8568273 DOI: 10.1371/journal.pone.0259448] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 10/18/2021] [Indexed: 11/24/2022] Open
Abstract
An increasing number of studies across many research fields from biomedical engineering to finance are employing measures of entropy to quantify the regularity, variability or randomness of time series and image data. Entropy, as it relates to information theory and dynamical systems theory, can be estimated in many ways, with newly developed methods being continuously introduced in the scientific literature. Despite the growing interest in entropic time series and image analysis, there is a shortage of validated, open-source software tools that enable researchers to apply these methods. To date, packages for performing entropy analysis are often run using graphical user interfaces, lack the necessary supporting documentation, or do not include functions for more advanced entropy methods, such as cross-entropy, multiscale cross-entropy or bidimensional entropy. In light of this, this paper introduces EntropyHub, an open-source toolkit for performing entropic time series analysis in MATLAB, Python and Julia. EntropyHub (version 0.1) provides an extensive range of more than forty functions for estimating cross-, multiscale, multiscale cross-, and bidimensional entropy, each including a number of keyword arguments that allows the user to specify multiple parameters in the entropy calculation. Instructions for installation, descriptions of function syntax, and examples of use are fully detailed in the supporting documentation, available on the EntropyHub website- www.EntropyHub.xyz. Compatible with Windows, Mac and Linux operating systems, EntropyHub is hosted on GitHub, as well as the native package repository for MATLAB, Python and Julia, respectively. The goal of EntropyHub is to integrate the many established entropy methods into one complete resource, providing tools that make advanced entropic time series analysis straightforward and reproducible.
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Affiliation(s)
- Matthew W. Flood
- Human Motion, Orthopaedics, Sports Medicine and Digital Methods (HOSD), Luxembourg Institute of Health (LIH), Eich, Luxembourg
| | - Bernd Grimm
- Human Motion, Orthopaedics, Sports Medicine and Digital Methods (HOSD), Luxembourg Institute of Health (LIH), Eich, Luxembourg
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Rahul J, Sharma LD, Bohat VK. Short duration Vectorcardiogram based inferior myocardial infarction detection: class and subject-oriented approach. BIOMED ENG-BIOMED TE 2021; 66:489-501. [PMID: 33939896 DOI: 10.1515/bmt-2020-0329] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 03/30/2021] [Indexed: 12/17/2022]
Abstract
Myocardial infarction (MI) happens when blood stops circulating to an explicit segment of the heart causing harm to the heart muscles. Vectorcardiography (VCG) is a technique of recording direction and magnitude of the signals that are produced by the heart in a 3-lead representation. In this work, we present a technique for detection of MI in the inferior portion of heart using short duration VCG signals. The raw signal was pre-processed using the median and Savitzky-Golay (SG) filter. The Stationary Wavelet Transform (SWT) was used for time-invariant decomposition of the signal followed by feature extraction. The selected features using minimum-redundancy-maximum-relevance (mRMR) based feature selection method were applied to the supervised classification methods. The efficacy of the proposed method was assessed under both class-oriented and a more real-life subject-oriented approach. An accuracy of 99.14 and 89.37% were achieved respectively. Results of the proposed technique are better than existing state-of-art methods and used VCG segment is shorter. Thus, a shorter segment and a high accuracy can be helpful in the automation of timely and reliable detection of MI. The satisfactory performance achieved in the subject-oriented approach shows reliability and applicability of the proposed technique.
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Affiliation(s)
- Jagdeep Rahul
- Department of Electronics & Communication Engineering, Rajiv Gandhi University, Itanagar, Arunachal Pradesh, India
| | - Lakhan Dev Sharma
- School of Electronics Engineering, VIT-AP University, Amaravati, Andhra Pradesh, India
| | - Vijay Kumar Bohat
- Department of Computer Science & Engineering, Bennett University, Greater Noida, Uttar Pradesh, India
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Torabi A, Daliri MR. Applying nonlinear measures to the brain rhythms: an effective method for epilepsy diagnosis. BMC Med Inform Decis Mak 2021; 21:270. [PMID: 34560859 PMCID: PMC8464089 DOI: 10.1186/s12911-021-01631-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Accepted: 09/14/2021] [Indexed: 11/22/2022] Open
Abstract
Background Epilepsy is a neurological disorder from which almost 50 million people have been suffering. These statistics indicate the importance of epilepsy diagnosis. Electroencephalogram (EEG) signals analysis is one of the most common methods for epilepsy characterization; hence, various strategies were applied to classify epileptic EEGs. Methods In this paper, four different nonlinear features such as Fractal dimensions including Higuchi method (HFD) and Katz method (KFD), Hurst exponent, and L-Z complexity measure were extracted from EEGs and their frequency sub-bands. The features were ranked later by implementing Relieff algorithm. The ranked features were applied sequentially to three different classifiers (MLPNN, Linear SVM, and RBF SVM). Results According to the dataset used for this study, there are five classification problems named ABCD/E, AB/CD/E, A/D/E, A/E, and D/E. In all cases, MLPNN was the most accurate classifier. Its performances for mentioned classification problems were 99.91%, 98.19%, 98.5%, 100% and 99.84%, respectively. Conclusion The results demonstrate that KFD is the highest-ranking feature; In addition, beta and theta sub-bands are the most important frequency bands because, for all cases, the top features were KFDs extracted from beta and theta sub-bands. Moreover, high levels of accuracy have been obtained just by using these two features which reduce the complexity of the classification.
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Affiliation(s)
- Ali Torabi
- Biomedical Engineering Department, School of Electrical Engineering, Iran University of Science and Technology (IUST), 16846-13114, Narmak, Tehran, Iran
| | - Mohammad Reza Daliri
- Biomedical Engineering Department, School of Electrical Engineering, Iran University of Science and Technology (IUST), 16846-13114, Narmak, Tehran, Iran.
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Baygin M, Yaman O, Tuncer T, Dogan S, Barua PD, Acharya UR. Automated accurate schizophrenia detection system using Collatz pattern technique with EEG signals. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102936] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Mishra A, Marzban N, Cohen MX, Englitz B. Dynamics of Neural Microstates in the VTA-Striatal-Prefrontal Loop during Novelty Exploration in the Rat. J Neurosci 2021; 41:6864-6877. [PMID: 34193560 PMCID: PMC8360694 DOI: 10.1523/jneurosci.2256-20.2021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 05/17/2021] [Accepted: 05/21/2021] [Indexed: 11/21/2022] Open
Abstract
Neural activity at the large-scale population level has been suggested to be consistent with a sequence of brief, quasistable spatial patterns. These "microstates" and their temporal dynamics have been linked to myriad cognitive functions and brain diseases. Most of this research has been performed using EEG, leaving many questions, such as the existence, dynamics, and behavioral relevance of microstates at the level of local field potentials (LFPs), unaddressed. Here, we adapted the standard EEG microstate analysis to triple-area LFP recordings from 192 electrodes in rats to investigate the mesoscopic dynamics of neural microstates within and across brain regions during novelty exploration. We performed simultaneous recordings from the prefrontal cortex, striatum, and ventral tegmental area in male rats during awake behavior (object novelty and exploration). We found that the LFP data can be accounted for by multiple, recurring microstates that were stable for ∼60-100 ms. The simultaneous microstate activity across brain regions revealed rhythmic patterns of coactivations, which we interpret as a novel indicator of inter-regional, mesoscale synchronization. Furthermore, these rhythmic coactivation patterns across microstates were modulated by behavioral states such as movement and exploration of a novel object. These results support the existence of a functional mesoscopic organization across multiple brain areas and present a possible link of the origin of macroscopic EEG microstates to zero-lag neuronal synchronization within and between brain areas, which is of particular interest to the human research community.SIGNIFICANCE STATEMENT The coordination of neural activity across the entire brain has remained elusive. Here we combine large-scale neural recordings at fine spatial resolution with the analysis of microstates (i.e., short-lived, recurring spatial patterns of neural activity). We demonstrate that the local activity in different brain areas can be accounted for by only a few microstates per region. These microstates exhibited temporal dynamics that were correlated across regions in rhythmic patterns. We demonstrate that these microstates are linked to behavior and exhibit different properties in the frequency domain during different behavioral states. In summary, LFP microstates provide an insightful approach to studying both mesoscopic and large-scale brain activation within and across regions.
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Affiliation(s)
- Ashutosh Mishra
- Synchronisation in Neural Systems Laboratory, Department of Neuroinformatics, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, 6500 HB, Nijmegen, The Netherlands
- Computational Neuroscience Laboratory, Department of Neurophysiology, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands
| | - Nader Marzban
- Synchronisation in Neural Systems Laboratory, Department of Neuroinformatics, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, 6500 HB, Nijmegen, The Netherlands
| | - Michael X Cohen
- Synchronisation in Neural Systems Laboratory, Department of Neuroinformatics, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, 6500 HB, Nijmegen, The Netherlands
| | - Bernhard Englitz
- Computational Neuroscience Laboratory, Department of Neurophysiology, Donders Institute for Brain, Cognition and Behavior, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands
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BENCHAIB YASMINE. IMPROVED ARTIFICIAL NEURAL NETWORK FOR EPILEPTIC SEIZURES DETECTION. J MECH MED BIOL 2021. [DOI: 10.1142/s0219519421500457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Electroencephalogram (EEG) is a fundamental and unique tool for exploring human brain activity in general and epileptic mechanism in particular. It offers significant information about epileptic seizures source known as epileptogenic area. However, it is often complicated to detect critical changes in EEG signals by visual examination, since this signal aspect of epileptic persons seems to be normal out of the seizure. Thus, the challenge is to design such a robust and automatic system to detect these unseen changes and use them for diagnosis. In this research, we apply the Artificial Metaplasticity Multi-Layer Perceptron (AMMLP) together with discrete wavelet transform (DWT) to Bonn EEG signals for seizure detection goal. Significant features were then extracted from the well-known EEG brainwaves. Aiming to decrease the computational time and improve classification accuracy, we performed a features ranking and selection employing the Relief algorithm. The obtained AMMLP classification accuracy of 98.97% proved the effctiveness of the applied approach. Our results were compared to recent researches results on the same database, proving to be superior or at least an interesting alternative for seizures detection within EEG signals.
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Affiliation(s)
- YASMINE BENCHAIB
- Biomedical Engineering Department, Faculty of Technology, University of Tlemcen, Algeria
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Medrano J, Kheddar A, Lesne A, Ramdani S. Radius selection using kernel density estimation for the computation of nonlinear measures. CHAOS (WOODBURY, N.Y.) 2021; 31:083131. [PMID: 34470232 DOI: 10.1063/5.0055797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
When nonlinear measures are estimated from sampled temporal signals with finite-length, a radius parameter must be carefully selected to avoid a poor estimation. These measures are generally derived from the correlation integral, which quantifies the probability of finding neighbors, i.e., pair of points spaced by less than the radius parameter. While each nonlinear measure comes with several specific empirical rules to select a radius value, we provide a systematic selection method. We show that the optimal radius for nonlinear measures can be approximated by the optimal bandwidth of a Kernel Density Estimator (KDE) related to the correlation sum. The KDE framework provides non-parametric tools to approximate a density function from finite samples (e.g., histograms) and optimal methods to select a smoothing parameter, the bandwidth (e.g., bin width in histograms). We use results from KDE to derive a closed-form expression for the optimal radius. The latter is used to compute the correlation dimension and to construct recurrence plots yielding an estimate of Kolmogorov-Sinai entropy. We assess our method through numerical experiments on signals generated by nonlinear systems and experimental electroencephalographic time series.
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Affiliation(s)
- Johan Medrano
- LIRMM, CNRS UMR 5506, University of Montpellier, F-34095 Montpellier, France
| | | | - Annick Lesne
- Sorbonne Université, CNRS, Laboratoire de Physique Théorique de la Matière Condensée, LPTMC, F-75252 Paris, France
| | - Sofiane Ramdani
- LIRMM, CNRS UMR 5506, University of Montpellier, F-34095 Montpellier, France
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