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Grégoire JM, Gilon C, Vaneberg N, Bersini H, Carlier S. Machine learning-based atrial fibrillation detection and onset prediction using QT-dynamicity. Physiol Meas 2024; 45:075001. [PMID: 38848724 DOI: 10.1088/1361-6579/ad55a1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 06/07/2024] [Indexed: 06/09/2024]
Abstract
Objective. This study examines the value of ventricular repolarization using QT dynamicity for two different types of atrial fibrillation (AF) prediction.Approach. We studied the importance of QT-dynamicity (1) in the detection and (2) the onset prediction (i.e. forecasting) of paroxysmal AF episodes using gradient-boosted decision trees (GBDT), an interpretable machine learning technique. We labeled 176 paroxysmal AF onsets from 88 patients in our unselected Holter recordings database containing paroxysmal AF episodes. Raw ECG signals were delineated using a wavelet-based signal processing technique. A total of 44 ECG features related to interval and wave durations and amplitude were selected and the GBDT model was trained with a Bayesian hyperparameters selection for various windows. The dataset was split into two parts at the patient level, meaning that the recordings from each patient were only present in either the train or test set, but not both. We used 80% on the database for the training and the remaining 20% for the test of the trained model. The model was evaluated using 5-fold cross-validation.Main results.The mean age of the patients was 75.9 ± 11.9 (range 50-99), the number of episodes per patient was 2.3 ± 2.2 (range 1-11), and CHA2DS2-VASc score was 2.9 ± 1.7 (range 1-9). For the detection of AF, we obtained an area under the receiver operating curve (AUROC) of 0.99 (CI 95% 0.98-0.99) and an accuracy of 95% using a 30 s window. Features related to RR intervals were the most influential, followed by those on QT intervals. For the AF onset forecast, we obtained an AUROC of 0.739 (0.712-0.766) and an accuracy of 74% using a 120s window. R wave amplitude and QT dynamicity as assessed by Spearman's correlation of the QT-RR slope were the best predictors.Significance. The QT dynamicity can be used to accurately predict the onset of AF episodes. Ventricular repolarization, as assessed by QT dynamicity, adds information that allows for better short time prediction of AF onset, compared to relying only on RR intervals and heart rate variability. Communication between the ventricles and atria is mediated by the autonomic nervous system (ANS). The variations in intraventricular conduction and ventricular repolarization changes resulting from the influence of the ANS play a role in the initiation of AF.
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Affiliation(s)
- Jean-Marie Grégoire
- IRIDIA, Université Libre de Bruxelles, Av. Adolphe Buyl 87, 1050 Bruxelles, Belgium
- Cardiology Department, Université de Mons, Place du Parc 20, 7000 Mons, Belgium
| | - Cédric Gilon
- IRIDIA, Université Libre de Bruxelles, Av. Adolphe Buyl 87, 1050 Bruxelles, Belgium
| | - Nathan Vaneberg
- IRIDIA, Université Libre de Bruxelles, Av. Adolphe Buyl 87, 1050 Bruxelles, Belgium
| | - Hugues Bersini
- IRIDIA, Université Libre de Bruxelles, Av. Adolphe Buyl 87, 1050 Bruxelles, Belgium
| | - Stéphane Carlier
- Cardiology Department, Université de Mons, Place du Parc 20, 7000 Mons, Belgium
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Gavidia M, Zhu H, Montanari AN, Fuentes J, Cheng C, Dubner S, Chames M, Maison-Blanche P, Rahman MM, Sassi R, Badilini F, Jiang Y, Zhang S, Zhang HT, Du H, Teng B, Yuan Y, Wan G, Tang Z, He X, Yang X, Goncalves J. Early warning of atrial fibrillation using deep learning. PATTERNS (NEW YORK, N.Y.) 2024; 5:100970. [PMID: 39005489 PMCID: PMC11240177 DOI: 10.1016/j.patter.2024.100970] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 02/21/2024] [Accepted: 03/25/2024] [Indexed: 07/16/2024]
Abstract
Atrial fibrillation (AF), the most prevalent cardiac rhythm disorder, significantly increases hospitalization and health risks. Reverting from AF to sinus rhythm (SR) often requires intensive interventions. This study presents a deep-learning model capable of predicting the transition from SR to AF on average 30.8 min before the onset appears, with an accuracy of 83% and an F1 score of 85% on the test data. This performance was obtained from R-to-R interval signals, which can be accessible from wearable technology. Our model, entitled Warning of Atrial Fibrillation (WARN), consists of a deep convolutional neural network trained and validated on 24-h Holter electrocardiogram data from 280 patients, with 70 additional patients used for testing and further evaluation on 33 patients from two external centers. The low computational cost of WARN makes it ideal for integration into wearable technology, allowing for continuous heart monitoring and early AF detection, which can potentially reduce emergency interventions and improve patient outcomes.
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Affiliation(s)
- Marino Gavidia
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 4367 Belvaux, Luxembourg
| | - Hongling Zhu
- Division of Cardiology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
| | - Arthur N. Montanari
- Department of Physics and Astronomy, Northwestern University, Evanston, IL 60208, USA
| | - Jesús Fuentes
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 4367 Belvaux, Luxembourg
| | - Cheng Cheng
- School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Sergio Dubner
- Clinica y Maternidad Suizo Argentina, Buenos Aires 1461, Argentina
| | - Martin Chames
- Centro Integral Cardiovascular, Gualeguaychú, Entre Ríos, Argentina
| | | | | | - Roberto Sassi
- Computer Science Department, University of Milan, 20133 Milan, Italy
| | - Fabio Badilini
- Department of Physiologic Nursing, University of California, San Francisco, San Francisco, CA 94143, USA
| | - Yinuo Jiang
- School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Shengjun Zhang
- School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Hai-Tao Zhang
- School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Hao Du
- Department of Ophthalmology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
| | - Basi Teng
- Department of Plant Sciences, Cambridge University, CB2 3EA Cambridge, UK
| | - Ye Yuan
- School of Artificial Intelligence and Automation, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Guohua Wan
- Antai College of Economics and Management, Shanghai Jiao Tong University, Shanghai 200052, China
| | - Zhouping Tang
- Department of Neurology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
| | - Xin He
- School of Mechanical Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Xiaoyun Yang
- Division of Cardiology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China
| | - Jorge Goncalves
- Luxembourg Centre for Systems Biomedicine, University of Luxembourg, 4367 Belvaux, Luxembourg
- Department of Plant Sciences, Cambridge University, CB2 3EA Cambridge, UK
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Khalpey Z, Wilson P, Suri Y, Culbert H, Deckwa J, Khalpey A, Rozell B. Leveling Up: A Review of Machine Learning Models in the Cardiac ICU. Am J Med 2023; 136:979-984. [PMID: 37343909 DOI: 10.1016/j.amjmed.2023.05.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 05/28/2023] [Accepted: 05/29/2023] [Indexed: 06/23/2023]
Abstract
Machine learning has emerged as a significant tool to augment the medical decision-making process. Studies have steadily accrued detailing algorithms and models designed using machine learning to predict and anticipate pathologic states. The cardiac intensive care unit is an area where anticipation is crucial in the division between life and death. In this paper, we aim to review important studies describing the utility of machine learning algorithms to describe the future of artificial intelligence in the cardiac intensive care unit, especially in regards to the prediction of successful ventilatory weaning, acute respiratory distress syndrome, arrhythmia, and acute kidney injury.
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Affiliation(s)
- Zain Khalpey
- Division of Cardiothoracic Surgery, Heart and Vascular Institute, HonorHealth, Scottsdale, Ariz.
| | | | - Yash Suri
- University of Arizona College of Medicine, Tucson
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Kim Y, Joo G, Jeon BK, Kim DH, Shin TY, Im H, Park J. Clinical applicability of an artificial intelligence prediction algorithm for early prediction of non-persistent atrial fibrillation. Front Cardiovasc Med 2023; 10:1168054. [PMID: 37781313 PMCID: PMC10534067 DOI: 10.3389/fcvm.2023.1168054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 08/15/2023] [Indexed: 10/03/2023] Open
Abstract
Background and aims It is difficult to document atrial fibrillation (AF) on ECG in patients with non-persistent atrial fibrillation (non-PeAF). There is limited understanding of whether an AI prediction algorithm could predict the occurrence of non-PeAF from the information of normal sinus rhythm (SR) of a 12-lead ECG. This study aimed to derive a precise predictive AI model for screening non-PeAF using SR ECG within 4 weeks. Methods This retrospective cohort study included patients aged 18 to 99 with SR ECG on 12-lead standard ECG (10 seconds) in Ewha Womans University Medical Center for 3 years. Data were preprocessed into three window periods (which are defined with the duration from SR to non-PeAF detection) - 1 week, 2 weeks, and 4 weeks from the AF detection prospectively. For experiments, we adopted a Residual Neural Network model based on 1D-CNN proposed in a previous study. We used 7,595 SR ECGs (extracted from 215,875 ECGs) with window periods of 1 week, 2 weeks, and 4 weeks for analysis. Results The prediction algorithm showed an AUC of 0.862 and an F1-score of 0.84 in the 1:4 matched group of a 1-week window period. For the 1:4 matched group of a 2-week window period, it showed an AUC of 0.864 and an F1-score of 0.85. Finally, for the 1:4 matched group of a 4-week window period, it showed an AUC of 0.842 and an F1-score of 0.83. Conclusion The AI prediction algorithm showed the possibility of risk stratification for early detection of non-PeAF. Moreover, this study showed that a short window period is also sufficient to detect non-PeAF.
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Affiliation(s)
- Yeji Kim
- Cardiovascular Center, Department of Internal Medicine, College of Medicine, Ewha Womans University Medical Center, Seoul, Republic of Korea
| | - Gihun Joo
- Interdisciplinary Graduate Program in Medical Bigdata Convergence, Kangwon National University, Chuncheon, Republic of Korea
| | - Bo-Kyung Jeon
- Cardiovascular Center, Department of Internal Medicine, College of Medicine, Ewha Womans University Medical Center, Seoul, Republic of Korea
| | - Dong-Hyeok Kim
- Cardiovascular Center, Department of Internal Medicine, College of Medicine, Ewha Womans University Medical Center, Seoul, Republic of Korea
| | - Tae Young Shin
- Department of Urology, College of Medicine, Ewha Womans University Medical Center, SYNERGY AI, Ewha Womans University Mokdong Hospital, Seoul, Republic of Korea
| | - Hyeonseung Im
- Interdisciplinary Graduate Program in Medical Bigdata Convergence, Kangwon National University, Chuncheon, Republic of Korea
- Department of Computer Science and Engineering, Kangwon National University, Chuncheon, Republic of Korea
| | - Junbeom Park
- Cardiovascular Center, Department of Internal Medicine, College of Medicine, Ewha Womans University Medical Center, Seoul, Republic of Korea
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Geurts S, Lu Z, Kavousi M. Perspectives on Sex- and Gender-Specific Prediction of New-Onset Atrial Fibrillation by Leveraging Big Data. Front Cardiovasc Med 2022; 9:886469. [PMID: 35898269 PMCID: PMC9309362 DOI: 10.3389/fcvm.2022.886469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 06/17/2022] [Indexed: 02/01/2023] Open
Abstract
Atrial fibrillation (AF), the most common sustained cardiac arrhythmia, has a large impact on quality of life and is associated with increased risk of hospitalization, morbidity, and mortality. Over the past two decades advances regarding the clinical epidemiology and management of AF have been established. Moreover, sex differences in the prevalence, incidence, prediction, pathophysiology, and prognosis of AF have been identified. Nevertheless, AF remains to be a complex and heterogeneous disorder and a comprehensive sex- and gender-specific approach to predict new-onset AF is lacking. The exponential growth in various sources of big data such as electrocardiograms, electronic health records, and wearable devices, carries the potential to improve AF risk prediction. Leveraging these big data sources by artificial intelligence (AI)-enabled approaches, in particular in a sex- and gender-specific manner, could lead to substantial advancements in AF prediction and ultimately prevention. We highlight the current status, premise, and potential of big data to improve sex- and gender-specific prediction of new-onset AF.
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A Decision-making System with Reject Option for Atrial Fibrillation Prediction without ECG Signals. Ing Rech Biomed 2022. [DOI: 10.1016/j.irbm.2022.04.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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7
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Role of the autonomic nervous system and premature atrial contractions in short-term paroxysmal atrial fibrillation forecasting: Insights from machine learning models. Arch Cardiovasc Dis 2022; 115:377-387. [DOI: 10.1016/j.acvd.2022.04.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Revised: 04/04/2022] [Accepted: 04/06/2022] [Indexed: 02/01/2023]
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Serhal H, Abdallah N, Marion JM, Chauvet P, Oueidat M, Humeau-Heurtier A. Overview on prediction, detection, and classification of atrial fibrillation using wavelets and AI on ECG. Comput Biol Med 2022; 142:105168. [DOI: 10.1016/j.compbiomed.2021.105168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 12/08/2021] [Accepted: 12/20/2021] [Indexed: 02/01/2023]
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Castro H, Garcia-Racines JD, Bernal-Norena A. Methodology for the prediction of paroxysmal atrial fibrillation based on heart rate variability feature analysis. Heliyon 2021; 7:e08244. [PMID: 34765772 PMCID: PMC8569481 DOI: 10.1016/j.heliyon.2021.e08244] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 08/11/2021] [Accepted: 10/20/2021] [Indexed: 11/01/2022] Open
Abstract
Atrial fibrillation (AF) is the most clinically diagnosed arrhythmia, as its prevalence increases with age, and its initial stage is paroxysmal atrial fibrillation (PAF). This pathology usually triggers hemodynamic disorders that can generate cerebrovascular accidents (CVA), causing morbidity and even death. The aim of this study is to predict the occurrence of PAF episodes in order to take precautions to prevent PAF episodes. The PhysioNet AFPDB prediction database was used to extract 77 heart rate variability (HRV) features using time domain, geometrical analysis, Poincaré plot, nonlinear analysis, detrended fluctuation analysis, autoregressive modeling, fast Fourier transform (FFT), Lomb-Scargle periodogram, wavelet packet transform (WPT) and bispectrum measurements. The number of features was reduced using the near-zero value, correlation, and recursive feature elimination (RFE) methods for time windows of 1, 2, 5, 10, and 30 min. Feature selection was performed using backwards selection, genetic algorithm, analysis of variance (ANOVA), and non-dominated sorting genetic algorithm (NSGA-III) methods, and then random forest, conditional random forest, k-nearest neighbor (KNN), and support vector machine (SVM) classification algorithms were applied and evaluated using 10-fold cross-validation. The proposed method achieved a precision of 93.24% with a 5-minute window and 89.21% with a 2-minute window, improving performance in predicting PAF when compared with similar studies in the literature.
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Affiliation(s)
- Henry Castro
- Universidad Santiago de Cali, Calle 5 No.62-00 Cali, Colombia.,Universidad del Valle, Calle 13 No. 100-00 Cali, Colombia
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10
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Surucu M, Isler Y, Perc M, Kara R. Convolutional neural networks predict the onset of paroxysmal atrial fibrillation: Theory and applications. CHAOS (WOODBURY, N.Y.) 2021; 31:113119. [PMID: 34881615 DOI: 10.1063/5.0069272] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 10/04/2021] [Indexed: 06/13/2023]
Abstract
In this study, we aimed to detect paroxysmal atrial fibrillation episodes before they occur so that patients can take precautions before putting their and others' lives in potentially life-threatening danger. We used the atrial fibrillation prediction database, open data from PhysioNet, and assembled our process based on convolutional neural networks. Conventional heart rate variability features are calculated from time-domain measures, frequency-domain measures using power spectral density estimations, time-frequency-domain measures using wavelet transform, and nonlinear Poincaré plot measures. In addition, we also applied an alternative heart rate normalization, which gave promising results only in a few studies, before calculating these heart rate variability features. We used these features directly and their normalized versions using min-max normalization and z-score normalization methods. Thus, heart rate variability features extracted from six different combinations of these normalizations, in addition to no normalization cases, were applied to the convolutional neural network classifier. We tuned the classifiers' hyperparameters using 90% of feature sets and tested the classifiers' performances using 10% of feature sets. The proposed approach resulted in 87.76% accuracy, 91.30% precision, 80.04% recall, and 87.50% f1-score in heart rate variability with z-score feature normalization. When the heart rate normalization was also utilized, the suggested method gave 100% accuracy, 100% precision, 100% recall, and 100% f1-score in heart rate variability with z-score feature normalization. The proposed method with heart rate normalization and z-score normalization methods resulted in better classification performance than similar studies in the literature. By comparing the existing studies, we conclude that our approach provides a much better tool to determine a near-future paroxysmal atrial fibrillation episode. However, although the achieved benchmarks are impressive, we note that the approach needs to be supported by other studies and on other datasets before clinical trials.
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Affiliation(s)
- M Surucu
- Department of Computer Engineering, Duzce University, 81620 Duzce, Turkey
| | - Y Isler
- Department of Biomedical Engineering, Izmir Katip Celebi University, Cigli, 35620 Izmir, Turkey
| | - M Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, 2000 Maribor, Slovenia
| | - R Kara
- Department of Computer Engineering, Duzce University, 81620 Duzce, Turkey
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Tzou HA, Lin SF, Chen PS. Paroxysmal atrial fibrillation prediction based on morphological variant P-wave analysis with wideband ECG and deep learning. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 211:106396. [PMID: 34592687 DOI: 10.1016/j.cmpb.2021.106396] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Accepted: 08/29/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND AND OBJECTIVE Atrial fibrillation (AF) is one of the most frequent asymptomatic arrhythmias associated with significant morbidity and mortality. Identifying the susceptibility to AF based on routine or continuous ECG recording is of considerable interest. Despite several P-wave characteristics and skin sympathetic nerve activity (SKNA) linked to AF onset, neither factor has offered accurate predictability. We propose a deep learning enabled method for AF risk prediction. METHODS We develop a novel MVPNet to predict the upcoming onset of paroxysmal AF. MVPNet combines wavelet-based feature extraction and a deep learning classifier. MVPNet detect the approaching of AF onset by analyzing the template and frequency in P-wave segments. The morphological variant P-wave (MVP) analysis includes P-wave and SKNA features cross temporal-spectral domain. Subsequently, we designed an optimized lightweight convolutional neural network model to detect the MVP features of pre-AF episodes during sinus rhythm segments. Wideband ECG data obtained through the neuECG protocol from eight PAF patients with 177 times AF occurrence in this study. We compared the accuracy of AF prediction between ordinary ECG and neuECG. RESULTS The MVPNet effectively predicted the onset of AF episodes. 89% of ECG recorded at 5 min before the AF onset can be identified using neuECG. The proposed deep learning model, MVPNet, obtained a better precision and inference speed with less computing resources than existing models. The gradient activation map showed that neuECG recording may be a superior AF risk predictor. CONCLUSIONS MVP analysis combined SKNA and P-wave parameters to improve predictive accuracy. The proposed MVPNet based on neuECG is superior to existing AF risk assessment with improved reliability and effectiveness. The method can be potentially applied in clinical scenarios for real-time, continuous AF prediction.
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Affiliation(s)
- Heng-An Tzou
- Institute of Biomedical Engineering, College of Electrical and Computer Engineering, National Chiao Tung University, Hsinchu, Taiwan; Devision for AI Computing Platform, Information and Communications Research Laboratories, Industrial Technology Research Institute, Hsinchu, Taiwan.
| | - Shien-Fong Lin
- Institute of Biomedical Engineering, College of Electrical and Computer Engineering, National Chiao Tung University, Hsinchu, Taiwan
| | - Peng-Sheng Chen
- Department of Cardiology, Smidt Heart Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA
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Bashar SK, Ding EY, Walkey AJ, McManus DD, Chon KH. Atrial Fibrillation Prediction from Critically Ill Sepsis Patients. BIOSENSORS 2021; 11:269. [PMID: 34436071 PMCID: PMC8391773 DOI: 10.3390/bios11080269] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 08/05/2021] [Accepted: 08/06/2021] [Indexed: 02/01/2023]
Abstract
Sepsis is defined by life-threatening organ dysfunction during infection and is the leading cause of death in hospitals. During sepsis, there is a high risk that new onset of atrial fibrillation (AF) can occur, which is associated with significant morbidity and mortality. Consequently, early prediction of AF during sepsis would allow testing of interventions in the intensive care unit (ICU) to prevent AF and its severe complications. In this paper, we present a novel automated AF prediction algorithm for critically ill sepsis patients using electrocardiogram (ECG) signals. From the heart rate signal collected from 5-min ECG, feature extraction is performed using the traditional time, frequency, and nonlinear domain methods. Moreover, variable frequency complex demodulation and tunable Q-factor wavelet-transform-based time-frequency methods are applied to extract novel features from the heart rate signal. Using a selected feature subset, several machine learning classifiers, including support vector machine (SVM) and random forest (RF), were trained using only the 2001 Computers in Cardiology data set. For testing the proposed method, 50 critically ill ICU subjects from the Medical Information Mart for Intensive Care (MIMIC) III database were used in this study. Using distinct and independent testing data from MIMIC III, the SVM achieved 80% sensitivity, 100% specificity, 90% accuracy, 100% positive predictive value, and 83.33% negative predictive value for predicting AF immediately prior to the onset of AF, while the RF achieved 88% AF prediction accuracy. When we analyzed how much in advance we can predict AF events in critically ill sepsis patients, the algorithm achieved 80% accuracy for predicting AF events 10 min early. Our algorithm outperformed a state-of-the-art method for predicting AF in ICU patients, further demonstrating the efficacy of our proposed method. The annotations of patients' AF transition information will be made publicly available for other investigators. Our algorithm to predict AF onset is applicable for any ECG modality including patch electrodes and wearables, including Holter, loop recorder, and implantable devices.
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Affiliation(s)
- Syed Khairul Bashar
- Biomedical Engineering Department, University of Connecticut, Storrs, CT 06269, USA;
| | - Eric Y. Ding
- Division of Cardiology, University of Massachusetts Medical School, Worcester, MA 01655, USA; (E.Y.D.); (D.D.M.)
| | - Allan J. Walkey
- Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA;
| | - David D. McManus
- Division of Cardiology, University of Massachusetts Medical School, Worcester, MA 01655, USA; (E.Y.D.); (D.D.M.)
| | - Ki H. Chon
- Biomedical Engineering Department, University of Connecticut, Storrs, CT 06269, USA;
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A Classification and Prediction Hybrid Model Construction with the IQPSO-SVM Algorithm for Atrial Fibrillation Arrhythmia. SENSORS 2021; 21:s21155222. [PMID: 34372459 PMCID: PMC8348396 DOI: 10.3390/s21155222] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 07/06/2021] [Accepted: 07/06/2021] [Indexed: 02/01/2023]
Abstract
Atrial fibrillation (AF) is the most common cardiovascular disease (CVD), and most existing algorithms are usually designed for the diagnosis (i.e., feature classification) or prediction of AF. Artificial intelligence (AI) algorithms integrate the diagnosis of AF electrocardiogram (ECG) and predict the possibility that AF will occur in the future. In this paper, we utilized the MIT-BIH AF Database (AFDB), which is composed of data from normal people and patients with AF and onset characteristics, and the AFPDB database (i.e., PAF Prediction Challenge Database), which consists of data from patients with Paroxysmal AF (PAF; the records contain the ECG preceding an episode of PAF), and subjects who do not have documented AF. We extracted the respective characteristics of the databases and used them in modeling diagnosis and prediction. In the aspect of model construction, we regarded diagnosis and prediction as two classification problems, adopted the traditional support vector machine (SVM) algorithm, and combined them. The improved quantum particle swarm optimization support vector machine (IQPSO-SVM) algorithm was used to speed the training time. During the verification process, the clinical FZU-FPH database created by Fuzhou University and Fujian Provincial Hospital was used for hybrid model testing. The data were obtained from the Holter monitor of the hospital and encrypted. We proposed an algorithm for transforming the PDF ECG waveform images of hospital examination reports into digital data. For the diagnosis model and prediction model trained using the training set of the AFDB and AFPDB databases, the sensitivity, specificity, and accuracy measures were 99.2% and 99.2%, 99.2% and 93.3%, and 91.7% and 92.5% for the test set of the AFDB and AFPDB databases, respectively. Moreover, the sensitivity, specificity, and accuracy were 94.2%, 79.7%, and 87.0%, respectively, when tested using the FZU-FPH database with 138 samples of the ECG composed of two labels. The composite classification and prediction model using a new water-fall ensemble method had a total accuracy of approximately 91% for the test set of the FZU-FPH database with 80 samples with 120 segments of ECG with three labels.
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Ketu S, Mishra PK. Empirical Analysis of Machine Learning Algorithms on Imbalance Electrocardiogram Based Arrhythmia Dataset for Heart Disease Detection. ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING 2021. [DOI: 10.1007/s13369-021-05972-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Olier I, Ortega-Martorell S, Pieroni M, Lip GYH. How machine learning is impacting research in atrial fibrillation: implications for risk prediction and future management. Cardiovasc Res 2021; 117:1700-1717. [PMID: 33982064 PMCID: PMC8477792 DOI: 10.1093/cvr/cvab169] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Accepted: 05/11/2021] [Indexed: 02/01/2023] Open
Abstract
There has been an exponential growth of artificial intelligence (AI) and machine learning (ML) publications aimed at advancing our understanding of atrial fibrillation (AF), which has been mainly driven by the confluence of two factors: the advances in deep neural networks (DeepNNs) and the availability of large, open access databases. It is observed that most of the attention has centred on applying ML for dvsetecting AF, particularly using electrocardiograms (ECGs) as the main data modality. Nearly a third of them used DeepNNs to minimize or eliminate the need for transforming the ECGs to extract features prior to ML modelling; however, we did not observe a significant advantage in following this approach. We also found a fraction of studies using other data modalities, and others centred in aims, such as risk prediction, AF management, and others. From the clinical perspective, AI/ML can help expand the utility of AF detection and risk prediction, especially for patients with additional comorbidities. The use of AI/ML for detection and risk prediction into applications and smart mobile health (mHealth) technology would enable ‘real time’ dynamic assessments. AI/ML could also adapt to treatment changes over time, as well as incident risk factors. Incorporation of a dynamic AI/ML model into mHealth technology would facilitate ‘real time’ assessment of stroke risk, facilitating mitigation of modifiable risk factors (e.g. blood pressure control). Overall, this would lead to an improvement in clinical care for patients with AF.
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Affiliation(s)
- Ivan Olier
- School of Computer Science and Mathematics, Liverpool John Moores University, 3 Byrom Street, Liverpool L3 3AF, UK.,Liverpool Centre for Cardiovascular Science, Liverpool John Moores University, Liverpool, UK
| | - Sandra Ortega-Martorell
- School of Computer Science and Mathematics, Liverpool John Moores University, 3 Byrom Street, Liverpool L3 3AF, UK.,Liverpool Centre for Cardiovascular Science, Liverpool John Moores University, Liverpool, UK
| | - Mark Pieroni
- School of Computer Science and Mathematics, Liverpool John Moores University, 3 Byrom Street, Liverpool L3 3AF, UK.,Liverpool Centre for Cardiovascular Science, Liverpool John Moores University, Liverpool, UK
| | - Gregory Y H Lip
- Liverpool Centre for Cardiovascular Science, Liverpool John Moores University, Liverpool, UK.,Liverpool Heart and Chest Hospital, Liverpool, UK
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16
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ZHU JUNJIANG, PU YU, HUANG HAO, WANG YUXUAN, LI XIAOLU, YAN TIANHONG. A FEATURE SELECTION-BASED ALGORITHM FOR DETECTION OF ATRIAL FIBRILLATION USING SHORT-TERM ECG. J MECH MED BIOL 2021. [DOI: 10.1142/s0219519421400133] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In the presence of premature atrial contraction (PAC), premature ventricular contraction (PVC) or other ectopic beats, RR intervals (RRIs) may be disturbed, which results in other types of heart disease being misdiagnosed as atrial fibrillation (AF). In this study, a low-complexity AF detection method based on short ECG is proposed, which includes RRIs modification and feature selection. The extracted RRIs are used to determine whether the potential RRI interference exists and to modify it. Next, based on the modified RRIs, the features are evaluated and selected by the methods of correlation criterion, Fisher criterion, and minimum redundancy maximum relevance criterion. Finally, filtered features are classified by the artificial neural network (ANN). The algorithm is validated in a test set including 2332 AF, 313 normal (NOR), 239 atrioventricular block (IAVB), 81 left bundle branch block (LBBB), 624 right bundle branch block (RBBB), 426 PAC and 564 PVC. Compared with the previous detection method of AF based on the RRIs, the proposed method achieved an overall sensitivity of 94.04% and an overall specificity of 86.74%. The specificity of the test set containing only AF and NOR is up to 99.04%. Meanwhile, the overall false-positive rate (FPR) of PAC and PVC can be reduced by 9.19%. While ensuring accuracy, this method effectively reduces the probability of misdiagnosis of PVC and PAC as AF. It is an automatic detection method of AF suitable for inter-patient clinical short-term ECG.
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Affiliation(s)
- JUNJIANG ZHU
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
| | - YU PU
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
| | - HAO HUANG
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
| | - YUXUAN WANG
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
| | - XIAOLU LI
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
| | - TIANHONG YAN
- College of Mechanical & Electronic Engineering, China Jiliang University, Hangzhou 310018, P. R. China
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17
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Parsi A, Glavin M, Jones E, Byrne D. Prediction of paroxysmal atrial fibrillation using new heart rate variability features. Comput Biol Med 2021; 133:104367. [PMID: 33866252 DOI: 10.1016/j.compbiomed.2021.104367] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 03/09/2021] [Accepted: 03/29/2021] [Indexed: 02/01/2023]
Abstract
Paroxysmal atrial fibrillation (PAF) is a cardiac arrhythmia that can eventually lead to heart failure or stroke if left untreated. Early detection of PAF is therefore crucial to prevent any further complications and avoid fatalities. An implantable defibrillator device could be used to both detect and treat the condition though such devices have limited computational capability. With this constraint in mind, this paper presents a novel set of features to accurately predict the presence of PAF. The method is evaluated using ECG signals from the widely used atrial fibrillation prediction database (AFPDB) from PhysioNet. We analysed 106 signals from 53 pairs of ECG recordings. Each pair of signals contains one 5-min ECG segment that ends just before the onset of a PAF event and another 5-min ECG segment at least 45 min distant from the PAF event, to represent a non-PAF event. Seven novel features are extracted through the Poincaré representation of R-R interval signals, and are prioritised through feature ranking schemes. The features are used with four standard classification techniques for PAF prediction and compared to the existing state of the art from the literature. Using only the seven proposed features, classification performance outperforms those of the classical state-of-the-art feature set, registering sensitivity and specificity measurements of over 96%. The results further improve when the features are combined with several of the classical features, with an accuracy increasing to 98% using a linear kernel SVM. The results show that the proposed features provide a useful representation of the PAF condition and achieve good prediction with off-the-shelf classification techniques that would be suitable for ICU deployment.
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Affiliation(s)
- Ashkan Parsi
- National University of Ireland (NUI) Galway, Galway, H91 TK33, Ireland.
| | - Martin Glavin
- National University of Ireland (NUI) Galway, Galway, H91 TK33, Ireland.
| | - Edward Jones
- National University of Ireland (NUI) Galway, Galway, H91 TK33, Ireland.
| | - Dallan Byrne
- National University of Ireland (NUI) Galway, Galway, H91 TK33, Ireland.
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18
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Prediction of atrial fibrillation inducibility using spatiotemporal activation analysis combined with network mapping. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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19
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Maghawry E, Ismail R, Gharib TF. An efficient approach for Paroxysmal Atrial Fibrillation events prediction using Extreme Learning Machine. JOURNAL OF INTELLIGENT & FUZZY SYSTEMS 2021. [DOI: 10.3233/jifs-201832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Paroxysmal Atrial Fibrillation (PAF) is a special class of Atrial Fibrillation. Predicting PAF events from electrocardiogram (ECG) signal streams plays a vital role in generating real-time alerts for cardiac disorders. These alerts are extremely important to cardiologists in taking precautions to prevent their patients from having a stroke. In this study, an effective predictive approach to PAF events using the Extreme Learning Machine classification technique is proposed. Besides, we propose a feature extraction method that integrates new ECG signal features to its time-domain ones. The new features are based on the construction of sparse vectors for peaks in ECG signals that provide high overlap between similar ECGs. The proposed prediction approach with the new ECG features representation were evaluated on a real PAF dataset using the five-fold cross-validation method. Experiments show promising results for predicting PAF in terms of accuracy and execution time compared to other existing studies. The proposed approach achieved classification accuracy of 97% for non-streaming ECG signals mode and 94.4% for streaming mode.
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Affiliation(s)
- Eman Maghawry
- Faculty of Computer and Information Science, Ain Shams University, Cairo, Egypt
| | - Rasha Ismail
- Faculty of Computer and Information Science, Ain Shams University, Cairo, Egypt
| | - Tarek F. Gharib
- Faculty of Computer and Information Science, Ain Shams University, Cairo, Egypt
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20
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Parsi A, Byrne D, Glavin M, Jones E. Heart rate variability feature selection method for automated prediction of sudden cardiac death. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102310] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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21
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Sánchez de la Nava AM, Atienza F, Bermejo J, Fernández-Avilés F. Artificial intelligence for a personalized diagnosis and treatment of atrial fibrillation. Am J Physiol Heart Circ Physiol 2021; 320:H1337-H1347. [PMID: 33513086 DOI: 10.1152/ajpheart.00764.2020] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Although atrial fibrillation (AF) is the most common cardiac arrhythmia, its early identification, diagnosis, and treatment is still challenging. Due to its heterogeneous mechanisms and risk factors, targeting an individualized treatment of AF demands a large amount of patient data to identify specific patterns. Artificial intelligence (AI) algorithms are particularly well suited for treating high-dimensional data, predicting outcomes, and eventually, optimizing strategies for patient management. The analysis of large patient samples combining different sources of information such as blood biomarkers, electrical signals, and medical images opens a new paradigm for improving diagnostic algorithms. In this review, we summarize suitable AI techniques for this purpose. In particular, we describe potential applications for understanding the structural and functional bases of the disease, as well as for improving early noninvasive diagnosis, developing more efficient therapies, and predicting long-term clinical outcomes of patients with AF.
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Affiliation(s)
- Ana María Sánchez de la Nava
- Department of Cardiology, Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Hospital General Universitario Gregorio Marañón, Madrid, Spain.,CIBERCV, Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares, Instituto de Salud Carlos III, Madrid, Spain.,Universitat Politècnica de València, València, Spain
| | - Felipe Atienza
- Department of Cardiology, Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Hospital General Universitario Gregorio Marañón, Madrid, Spain.,CIBERCV, Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares, Instituto de Salud Carlos III, Madrid, Spain.,Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain
| | - Javier Bermejo
- Department of Cardiology, Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Hospital General Universitario Gregorio Marañón, Madrid, Spain.,CIBERCV, Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares, Instituto de Salud Carlos III, Madrid, Spain.,Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain
| | - Francisco Fernández-Avilés
- Department of Cardiology, Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), Hospital General Universitario Gregorio Marañón, Madrid, Spain.,CIBERCV, Centro de Investigación Biomédica en Red de Enfermedades Cardiovasculares, Instituto de Salud Carlos III, Madrid, Spain.,Facultad de Medicina, Universidad Complutense de Madrid, Madrid, Spain
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22
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Skaria R, Parvaneh S, Zhou S, Kim J, Wanjiru S, Devers G, Konhilas J, Khalpey Z. Path to precision: prevention of post-operative atrial fibrillation. J Thorac Dis 2020; 12:2735-2746. [PMID: 32642182 PMCID: PMC7330352 DOI: 10.21037/jtd-19-3875] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Development of post-operative atrial fibrillation (POAF) following open-heart surgery is a significant clinical and economic burden. Despite advancements in medical therapies, the incidence of POAF remains elevated at 25-40%. Early work focused on detecting arrhythmias from electrocardiograms as well as identifying pre-operative risk factors from medical records. However, further progress has been stagnant, and a deeper understanding of pathogenesis and significant influences is warranted. With the advent of more complex machine learning (ML) algorithms and high-throughput sequencing, we have an unprecedented ability to capture and predict POAF in real-time. Integration of multimodal heterogeneous data and application of ML can generate a paradigm shift for diagnosis and treatment. This will require a concerted effort to consolidate and streamline real-time data. Herein, we will review the current literature and emerging opportunities aimed at predictive targets and new insights into the mechanisms underlying long-term sequelae of POAF.
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Affiliation(s)
- Rinku Skaria
- University of Arizona, College of Medicine, Tucson, AZ, USA
| | | | - Sophia Zhou
- Philips Research North America, Cambridge, MA, USA
| | - James Kim
- University of Arizona, College of Medicine, Tucson, AZ, USA
| | | | | | - John Konhilas
- University of Arizona, College of Medicine, Tucson, AZ, USA
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23
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Parsi A, O'Loughlin D, Glavin M, Jones E. Heart Rate Variability Analysis to Predict Onset of Ventricular Tachyarrhythmias in Implantable Cardioverter Defibrillators. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:6770-6775. [PMID: 31947395 DOI: 10.1109/embc.2019.8857911] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Implantable cardioverter defibrillators (ICDs) are commonly used in patients at high risk of sudden cardiac death (SCD) to help prevent and treat life-threatening arrhythmia. Up to 80% of cases of sudden cardiac death are caused by ventricular tachyarrhythmias (VTA) and the accurate prediction of VTA in patients with ICDs can help prevent SCD. Early prediction allows tiered and less invasive therapies to be used to help prevent VTA which are more easily tolerated by the patient and are less battery intensive. In this work, a comparative study of three types of frequency domain features (spectral, bispectrum, and Fourier-Bessel) for VTA prediction is presented based on heart rate variability (HRV) signals between one and five minutes prior to known SCD. Using Fourier-Bessel features and a standard classification approach resulted in the best performance of 87.5% accuracy, 89.3% sensitivity and 85.7% specificity. These results suggest that Fourier-Bessel features are a promising approach for SCD prediction, and that new feature development can help improve both the sensitivity and specificity of SCD prediction in ICDs.
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24
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Parsi A, O'Loughlin D, Glavin M, Jones E. Prediction of Sudden Cardiac Death in Implantable Cardioverter Defibrillators: A Review and Comparative Study of Heart Rate Variability Features. IEEE Rev Biomed Eng 2019; 13:5-16. [PMID: 31021774 DOI: 10.1109/rbme.2019.2912313] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Over the last four decades, implantable cardioverter defibrillators (ICDs) have been widely deployed to reduce sudden cardiac death (SCD) risk in patients with a history of life-threatening arrhythmia. By continuous monitoring of the heart rate, ICDs can use decision algorithms to distinguish normal cardiac sinus rhythm or supra-ventricular tachycardia from abnormal cardiac rhythms like ventricular tachycardia and ventricular fibrillation and deliver appropriate therapy such as an electrical stimulus. Despite the success of ICDs, more research is still needed, particularly in decision-making algorithms. Because of low specificity in practical devices, patients with ICDs still receive inappropriate shocks, which may lead to inadvertent mortality and reduction of quality of life. At the same time, higher sensitivity can lead to the use of newer tiered therapies. The purpose of this study is to review the literature on common signal features used in detection algorithms for abnormal cardiac sinus rhythm, as well as reviewing datasets used for algorithm development in previous studies. More than 50 different features to address heart rate changes before SCD have been reviewed and general methodology on this area proposed based on variety of studies on ICDs functionality. A comparative study on the prediction performance of these features, using a common database, is also presented. By combining these features with a support vector machine classifier, achieved results have compared well with other studies.
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25
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Ebrahimzadeh E, Kalantari M, Joulani M, Shahraki RS, Fayaz F, Ahmadi F. Prediction of paroxysmal Atrial Fibrillation: A machine learning based approach using combined feature vector and mixture of expert classification on HRV signal. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 165:53-67. [PMID: 30337081 DOI: 10.1016/j.cmpb.2018.07.014] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2018] [Revised: 06/17/2018] [Accepted: 07/25/2018] [Indexed: 02/01/2023]
Abstract
BACKGROUND AND OBJECTIVE Paroxysmal Atrial Fibrillation (PAF) is one of the most common major cardiac arrhythmia. Unless treated timely, PAF might transform into permanent Atrial Fibrillation leading to a high rate of morbidity and mortality. Therefore, increasing attention has been directed towards prediction of PAF, to enable early detection and prevent further progression of the disease. Notwithstanding the pharmacological and electrical treatments, a validated method to predict the onset of PAF is yet to be developed. We aim to address this issue through integrating classical and modern methods. METHODS To increase the predictivity, we have made use of a combination of features extracted through linear, time-frequency, and nonlinear analyses performed on heart rate variability. We then apply a novel approach to local feature selection using meticulous methodologies, developed in our previous works, to reduce the dimensionality of the feature space. Subsequently, the Mixture of Experts classification is employed to ensure a precise decision-making on the output of different processes. In the current study, we analyzed 106 signals from 53 pairs of ECG recordings obtained from the standard database called Atrial Fibrillation Prediction Database (AFPDB). Each pair of data contains one 30-min ECG segment that ends just before the onset of PAF event and another 30-min ECG segment at least 45 min distant from the onset. RESULTS Combining the features that are extracted using both classical and modern analyses was found to be significantly more effective in predicting the onset of PAF, compared to using either analyses independently. Also, the Mixture of Experts classification yielded more precise class discrimination than other well-known classifiers. The performance of the proposed method was evaluated using the Atrial Fibrillation Prediction Database (AFPDB) which led to sensitivity, specificity, and accuracy of 100%, 95.55%, and 98.21% respectively. CONCLUSION Prediction of PAF has been a matter of clinical and theoretical importance. We demonstrated that utilising an optimized combination of - as opposed to being restricted to - linear, time-frequency, and nonlinear features, along with applying the Mixture of Experts, contribute greatly to an early detection of PAF, thus, the proposed method is shown to be superior to those mentioned in similar studies in the literature.
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Affiliation(s)
- Elias Ebrahimzadeh
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, Tehran, Iran; Biomedical Engineering Department, School of Electrical Engineering, Payame Noor University of North Tehran, Tehran, Iran; Seaman Family MR Research Center, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada.
| | - Maede Kalantari
- Department of Biomedical Engineering, Faculty of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Mohammadamin Joulani
- Student Research Committee, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | | | - Farahnaz Fayaz
- Biomedical Engineering Department, School of Electrical Engineering, Payame Noor University of North Tehran, Tehran, Iran
| | - Fereshteh Ahmadi
- Biomedical Engineering Department, School of Electrical Engineering, Payame Noor University of North Tehran, Tehran, Iran
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26
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Abawajy J, Kelarev A, Yi X, Jelinek HF. Minimal ensemble based on subset selection using ECG to diagnose categories of CAN. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 160:85-94. [PMID: 29728250 DOI: 10.1016/j.cmpb.2018.01.019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 12/06/2017] [Accepted: 01/15/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND OBJECTIVE Early diagnosis of cardiac autonomic neuropathy (CAN) is critical for reversing or decreasing its progression and prevent complications. Diagnostic accuracy or precision is one of the core requirements of CAN detection. As the standard Ewing battery tests suffer from a number of shortcomings, research in automating and improving the early detection of CAN has recently received serious attention in identifying additional clinical variables and designing advanced ensembles of classifiers to improve the accuracy or precision of CAN diagnostics. Although large ensembles are commonly proposed for the automated diagnosis of CAN, large ensembles are characterized by slow processing speed and computational complexity. This paper applies ECG features and proposes a new ensemble-based approach for diagnosis of CAN progression. METHODS We introduce a Minimal Ensemble Based On Subset Selection (MEBOSS) for the diagnosis of all categories of CAN including early, definite and atypical CAN. MEBOSS is based on a novel multi-tier architecture applying classifier subset selection as well as the training subset selection during several steps of its operation. Our experiments determined the diagnostic accuracy or precision obtained in 5 × 2 cross-validation for various options employed in MEBOSS and other classification systems. RESULTS The experiments demonstrate the operation of the MEBOSS procedure invoking the most effective classifiers available in the open source software environment SageMath. The results of our experiments show that for the large DiabHealth database of CAN related parameters MEBOSS outperformed other classification systems available in SageMath and achieved 94% to 97% precision in 5 × 2 cross-validation correctly distinguishing any two CAN categories to a maximum of five categorizations including control, early, definite, severe and atypical CAN. CONCLUSIONS These results show that MEBOSS architecture is effective and can be recommended for practical implementations in systems for the diagnosis of CAN progression.
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Affiliation(s)
- Jemal Abawajy
- School of Information Technology, Deakin University, 221 Burwood Hwy, Victoria 3125, Australia.
| | - Andrei Kelarev
- School of Information Technology, Deakin University, 221 Burwood Hwy, Victoria 3125, Australia; School of Science, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia.
| | - Xun Yi
- School of Science, RMIT University, GPO Box 2476, Melbourne, VIC 3001, Australia.
| | - Herbert F Jelinek
- School of Community Health, Charles Sturt University, PO Box 789, Albury, NSW 2640, Australia.
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