A novel fuzzy rough selection of non-linearly extracted features for schizophrenia diagnosis using fMRI

Unveiling the potential of machine learning in schizophrenia diagnosis: A meta-analytic study of task-based neuroimaging data

The emergence of machine learning (ML) techniques has opened up new avenues for identifying biomarkers associated with schizophrenia (SCZ) using task-related fMRI (t-fMRI) designs. To evaluate the effectiveness of this approach, we conducted a comprehensive meta-analysis of 31 t-fMRI studies using a bivariate model. Our findings revealed a high overall sensitivity of 0.83 and specificity of 0.82 for t-fMRI studies. Notably, neuropsychological domains modulated the classification performance, with selective attention demonstrating a significantly higher specificity than working memory (β = 0.98, z = 2.11, P = 0.04). Studies involving older, chronic patients with SCZ reported higher sensitivity (P <0.015) and specificity (P <0.001) than those involving younger, first-episode patients or high-risk individuals for psychosis. Additionally, we found that the severity of negative symptoms was positively associated with the specificity of the classification model (β = 7.19, z = 2.20, P = 0.03). Taken together, these results support the potential of using task-based fMRI data in combination with machine learning techniques to identify biomarkers related to symptom outcomes in SCZ, providing a promising avenue for improving diagnostic accuracy and treatment efficacy. Future attempts to deploy ML classification should consider the factors of algorithm choice, data quality and quantity, as well as issues related to generalization.

Feature and decision-level fusion for schizophrenia detection based on resting-state fMRI data

Mental disorders, especially schizophrenia, still pose a great challenge for diagnosis in early stages. Recently, computer-aided diagnosis techniques based on resting-state functional magnetic resonance imaging (Rs-fMRI) have been developed to tackle this challenge. In this work, we investigate different decision-level and feature-level fusion schemes for discriminating between schizophrenic and normal subjects. Four types of fMRI features are investigated, namely the regional homogeneity, voxel-mirrored homotopic connectivity, fractional amplitude of low-frequency fluctuations and amplitude of low-frequency fluctuations. Data denoising and preprocessing were first applied, followed by the feature extraction module. Four different feature selection algorithms were applied, and the best discriminative features were selected using the algorithm of feature selection via concave minimization (FSV). Support vector machine classifiers were trained and tested on the COBRE dataset formed of 70 schizophrenic subjects and 70 healthy subjects. The decision-level fusion method outperformed the single-feature-type approaches and achieved a 97.85% accuracy, a 98.33% sensitivity, a 96.83% specificity. Moreover, feature-fusion scheme resulted in a 98.57% accuracy, a 99.71% sensitivity, a 97.66% specificity, and an area under the ROC curve of 0.9984. In general, decision-level and feature-level fusion schemes boosted the performance of schizophrenia detectors based on fMRI features.

A CNN-transformer hybrid approach for decoding visual neural activity into text

BACKGROUND AND OBJECTIVE

Most studies used neural activities evoked by linguistic stimuli such as phrases or sentences to decode the language structure. However, compared to linguistic stimuli, it is more common for the human brain to perceive the outside world through non-linguistic stimuli such as natural images, so only relying on linguistic stimuli cannot fully understand the information perceived by the human brain. To address this, an end-to-end mapping model between visual neural activities evoked by non-linguistic stimuli and visual contents is demanded.

METHODS

Inspired by the success of the Transformer network in neural machine translation and the convolutional neural network (CNN) in computer vision, here a CNN-Transformer hybrid language decoding model is constructed in an end-to-end fashion to decode functional magnetic resonance imaging (fMRI) signals evoked by natural images into descriptive texts about the visual stimuli. Specifically, this model first encodes a semantic sequence extracted by a two-layer 1D CNN from the multi-time visual neural activity into a multi-level abstract representation, then decodes this representation, step by step, into an English sentence.

RESULTS

Experimental results show that the decoded texts are semantically consistent with the corresponding ground truth annotations. Additionally, by varying the encoding and decoding layers and modifying the original positional encoding of the Transformer, we found that a specific architecture of the Transformer is required in this work.

CONCLUSIONS

The study results indicate that the proposed model can decode the visual neural activities evoked by natural images into descriptive text about the visual stimuli in the form of sentences. Hence, it may be considered as a potential computer-aided tool for neuroscientists to understand the neural mechanism of visual information processing in the human brain in the future.

A novel event-related fMRI supervoxels-based representation and its application to schizophrenia diagnosis

BACKGROUND AND OBJECTIVE

The schizophrenia diagnosis represents a difficult task because of the confusing descriptions of symptoms given by the patient, their similarity among several disorders, the lower familiarity with genetic predisposition, and the probably inadequate response to the treatment. Neuro-biological markers of schizophrenia, as a quantitative relationship between the psychiatrist's reports and the biology of the brain, could be used. Functional Magnetic Resonance Imaging (fMRI) obtain the subject's performance in cognitive tasks and may find significant differences between the patient's data and controls. The input data of classifiers may imply alterations in diagnosis; therefore, it is essential to ensure an adequate representation to describe the entire dataset classified.

METHODS

We propose a supervoxels-based representation calculated by two main steps: the short-range connectivity, supervoxels' generation using a Fuzzy Iterative Clustering algorithm, and the long-range connectivity, employing Detrended Cross-Correlation Analysis among supervoxels. The unrelated supervoxels, through a statistical test based on critical points calculated empirically, are removed. The remainder supervoxels are the input for feature selectors to extract the discriminative supervoxels. We implement support vector machine classifiers using the correlation coefficient of the significant supervoxels. The dataset of 1.5 Tesla was downloaded from the SchizConnect site, where the fMRI data, during an auditory oddball task, was acquired. We calculate the performance of the classifiers using a leave-one-out cross-validation and compute the area under the Receiver Operating Characteristic curve and a permutation test to ensure no bias in the classifiers.

RESULTS

According to the permutation test, with p-values less than the significance level of 0.05, the classifiers extract discriminative class structure from data where no bias is shown. Our supervoxels-based representation gets the maximum values of sensitivity, specificity, and accuracy of 92.9%, 100%, and 96.4%, respectively. The discriminative brain regions, to discern among patients and controls, are extracted; these regions also are mentioned by the related works.

CONCLUSIONS

The proposed representation, based on supervoxels, is a data-driven model that does not use predefined models of the signal nor pre-relocated brain regions of interest. The results are competitive against the related works, and the relevant supervoxels are related to the schizophrenia diagnosis.

A Comprehensive Review of Computer-Aided Diagnosis of Major Mental and Neurological Disorders and Suicide: A Biostatistical Perspective on Data Mining

The World Health Organization (WHO) suggests that mental disorders, neurological disorders, and suicide are growing causes of morbidity. Depressive disorders, schizophrenia, bipolar disorder, Alzheimer's disease, and other dementias account for 1.84%, 0.60%, 0.33%, and 1.00% of total Disability Adjusted Life Years (DALYs). Furthermore, suicide, the 15th leading cause of death worldwide, could be linked to mental disorders. More than 68 computer-aided diagnosis (CAD) methods published in peer-reviewed journals from 2016 to 2021 were analyzed, among which 75% were published in the year 2018 or later. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) protocol was adopted to select the relevant studies. In addition to the gold standard, the sample size, neuroimaging techniques or biomarkers, validation frameworks, the classifiers, and the performance indices were analyzed. We further discussed how various performance indices are essential based on the biostatistical and data mining perspective. Moreover, critical information related to the Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD) guidelines was analyzed. We discussed how balancing the dataset and not using external validation could hinder the generalization of the CAD methods. We provided the list of the critical issues to consider in such studies.

Environmental Impact Evaluation of Distributed Renewable Energy System Based on Life Cycle Assessment and Fuzzy Rough Sets

The distributed renewable energy system, integrating various renewable energy resources, is a significant energy supply technology within energy internet. It is an effective way to meet increasingly growing demand for energy conservation and environmental damage reduction in energy generation and energy utilization. In this paper, the life cycle assessment (LCA) method and fuzzy rough sets (FRS) theory are combined to build an environmental evaluation model for a distributed renewable energy system. The ReCiPe2016 method is selected to calculate the environmental effect scores of the distributed energy system, and the FRS is utilized to identify the crucial activities and exchanges during its life cycle from cradle to grave. The generalized evaluation method is applied to a real-world case study, a typical distributed energy system located in Yanqing District, Beijing, China, which is composed of wind power, small-scale hydropower, photovoltaic, centralized solar thermal power plant and a biogas power plant. The results show that the environmental effect of per kWh power derived from the distributed renewable energy system is 2.06 × 10−3 species disappeared per year, 9.88 × 10−3 disability-adjusted life years, and 1.75 × 10−3 USD loss on fossil resources extraction, and further in the uncertainty analysis, it is found that the environmental load can be reduced effectively and efficiently by improving life span and annual utilization hour of power generation technologies and technology upgrade for wind turbine and photovoltaic plants. The results show that the proposed evaluation method could fast evaluate the environmental effects of a distributed energy system while the uncertainty analysis with FRS successfully and effectively identifies the key element and link among its life span.