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Medina D, Omanakuttan B, Nguyen R, Alwarsh E, Walgama C. Electrochemical Probing of Human Liver Subcellular S9 Fractions for Drug Metabolite Synthesis. Metabolites 2024; 14:429. [PMID: 39195525 DOI: 10.3390/metabo14080429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Revised: 07/24/2024] [Accepted: 07/30/2024] [Indexed: 08/29/2024] Open
Abstract
Human liver subcellular fractions, including liver microsomes (HLM), liver cytosol fractions, and S9 fractions, are extensively utilized in in vitro assays to predict liver metabolism. The S9 fractions are supernatants of human liver homogenates that contain both microsomes and cytosol, which include most cytochrome P450 (CYP) enzymes and soluble phase II enzymes such as glucuronosyltransferases and sulfotransferases. This study reports on the direct electrochemistry and biocatalytic features of redox-active enzymes in S9 fractions for the first time. We investigated the electrochemical properties of S9 films by immobilizing them onto a high-purity graphite (HPG) electrode and performing cyclic voltammetry under anaerobic (Ar-saturated) and aerobic (O2-saturated) conditions. The heterogeneous electron transfer rate between the S9 film and the HPG electrode was found to be 14 ± 3 s-1, with a formal potential of -0.451 V vs. Ag/AgCl reference electrode, which confirmed the electrochemical activation of the FAD/FMN cofactor containing CYP450-reductase (CPR) as the electron receiver from the electrode. The S9 films have also demonstrated catalytic oxygen reduction under aerobic conditions, identical to HLM films attached to similar electrodes. Additionally, we investigated CYP activity in the S9 biofilm for phase I metabolism using diclofenac hydroxylation as a probe reaction and identified metabolic products using liquid chromatography-mass spectrometry (LC-MS). Investigating the feasibility of utilizing liver S9 fractions in such electrochemical assays offers significant advantages for pharmacological and toxicological evaluations of new drugs in development while providing valuable insights for the development of efficient biosensor and bioreactor platforms.
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Affiliation(s)
- Daphne Medina
- Department of Physical & Applied Sciences, University of Houston-Clear Lake, 2700 Bay Area Boulevard, Houston, TX 77058, USA
| | - Bhavana Omanakuttan
- Department of Physical & Applied Sciences, University of Houston-Clear Lake, 2700 Bay Area Boulevard, Houston, TX 77058, USA
| | - Ricky Nguyen
- Department of Physical & Applied Sciences, University of Houston-Clear Lake, 2700 Bay Area Boulevard, Houston, TX 77058, USA
| | - Eman Alwarsh
- Department of Physical & Applied Sciences, University of Houston-Clear Lake, 2700 Bay Area Boulevard, Houston, TX 77058, USA
| | - Charuksha Walgama
- Department of Physical & Applied Sciences, University of Houston-Clear Lake, 2700 Bay Area Boulevard, Houston, TX 77058, USA
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Premaratne G, Niroula J, Moulton JT, Krishnan S. Nanobioelectrocatalysis Using Human Liver Microsomes and Cytochrome P450 Bactosomes: Pyrenyl-Nanocarbon Electrodes. ACS APPLIED BIO MATERIALS 2024; 7:2197-2204. [PMID: 38431903 PMCID: PMC11022171 DOI: 10.1021/acsabm.3c01170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Revised: 02/10/2024] [Accepted: 02/20/2024] [Indexed: 03/05/2024]
Abstract
Human liver microsomes containing various drug-metabolizing cytochrome P450 (P450) enzymes, along with their NADPH-reductase bound to phospholipid membranes, were absorbed onto 1-pyrene butylamine pi-pi stacked with amine-functionalized multiwalled carbon nanotube-modified graphite electrodes. The interfaced microsomal biofilm demonstrated direct electrochemical communication with the underlying electrode surface and enhanced oxygen reduction electrocatalytic activity typical of heme enzymes such as P450s over the unmodified electrodes and nonenzymatic currents. Similar enhancements in currents were observed when the bioelectrodes were constructed with recombinant P450 2C9 (single isoform) expressed bactosomes. The designed liver microsomal and 2C9 bactosomal bioelectrodes successfully facilitated the electrocatalytic conversion of diclofenac, a drug candidate, into 4'-hydroxydiclofenac. The enzymatic electrocatalytic metabolite yield was several-fold greater on the modified electrodes than on the unmodified bulk graphite electrodes adsorbed with a microsomal or bactosomal film. The nonenzymatic metabolite production was less than the enzymatically catalyzed metabolite yield in the designed microsomal and bactosomal biofilm electrodes. To test the throughput potential of the designed biofilms, eight-electrode array configurations were tested with the microsomal and bactosomal biofilms toward electrochemical 4'-hydroxydiclofenac metabolite production from diclofenac. The stability of the designed microsomal bioelectrode was assessed using nonfaradaic impedance spectroscopy over 40 h, which indicated good stability.
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Affiliation(s)
- Gayan Premaratne
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Jinesh Niroula
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - James T. Moulton
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Sadagopan Krishnan
- Department of Chemistry, Oklahoma State University, Stillwater, Oklahoma 74078, United States
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Kuzikov AV, Masamrekh RA, Filippova TA, Tumilovich AM, Strushkevich NV, Gilep AA, Khudoklinova YY, Shumyantseva VV. Bielectrode Strategy for Determination of CYP2E1 Catalytic Activity: Electrodes with Bactosomes and Voltammetric Determination of 6-Hydroxychlorzoxazone. Biomedicines 2024; 12:152. [PMID: 38255257 PMCID: PMC10812958 DOI: 10.3390/biomedicines12010152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/26/2023] [Accepted: 01/05/2024] [Indexed: 01/24/2024] Open
Abstract
We describe a bielectrode system for evaluation of the electrocatalytic activity of cytochrome P450 2E1 (CYP2E1) towards chlorzoxazone. One electrode of the system was employed to immobilize Bactosomes with human CYP2E1, cytochrome P450 reductase (CPR), and cytochrome b5 (cyt b5). The second electrode was used to quantify CYP2E1-produced 6-hydroxychlorzoxazone by its direct electrochemical oxidation, registered using square-wave voltammetry. Using this system, we determined the steady-state kinetic parameters of chlorzoxazone hydroxylation by CYP2E1 of Bactosomes immobilized on the electrode: the maximal reaction rate (Vmax) was 1.64 ± 0.08 min-1, and the Michaelis constant (KM) was 78 ± 9 μM. We studied the electrochemical characteristics of immobilized Bactosomes and have revealed that electron transfer from the electrode occurs both to the flavin prosthetic groups of CPR and the heme iron ions of CYP2E1 and cyt b5. Additionally, it has been demonstrated that CPR has the capacity to activate CYP2E1 electrocatalytic activity towards chlorzoxazone, likely through intermolecular electron transfer from the electrochemically reduced form of CPR to the CYP2E1 heme iron ion.
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Affiliation(s)
- Alexey V. Kuzikov
- Institute of Biomedical Chemistry, 10, Pogodinskaya Street, 119121 Moscow, Russia; (R.A.M.); (T.A.F.); (A.A.G.); (V.V.S.)
- Department of Biochemistry, Faculty of Biomedicine, Pirogov Russian National Research Medical University, 1, Ostrovityanova Street, 117997 Moscow, Russia;
| | - Rami A. Masamrekh
- Institute of Biomedical Chemistry, 10, Pogodinskaya Street, 119121 Moscow, Russia; (R.A.M.); (T.A.F.); (A.A.G.); (V.V.S.)
- Department of Biochemistry, Faculty of Biomedicine, Pirogov Russian National Research Medical University, 1, Ostrovityanova Street, 117997 Moscow, Russia;
| | - Tatiana A. Filippova
- Institute of Biomedical Chemistry, 10, Pogodinskaya Street, 119121 Moscow, Russia; (R.A.M.); (T.A.F.); (A.A.G.); (V.V.S.)
- Department of Biochemistry, Faculty of Biomedicine, Pirogov Russian National Research Medical University, 1, Ostrovityanova Street, 117997 Moscow, Russia;
| | - Anastasiya M. Tumilovich
- Institute of Bioorganic Chemistry NASB, 5 Building 2, V.F. Kuprevich Street, 220084 Minsk, Belarus; (A.M.T.); (N.V.S.)
| | - Natallia V. Strushkevich
- Institute of Bioorganic Chemistry NASB, 5 Building 2, V.F. Kuprevich Street, 220084 Minsk, Belarus; (A.M.T.); (N.V.S.)
| | - Andrei A. Gilep
- Institute of Biomedical Chemistry, 10, Pogodinskaya Street, 119121 Moscow, Russia; (R.A.M.); (T.A.F.); (A.A.G.); (V.V.S.)
- Institute of Bioorganic Chemistry NASB, 5 Building 2, V.F. Kuprevich Street, 220084 Minsk, Belarus; (A.M.T.); (N.V.S.)
| | - Yulia Yu. Khudoklinova
- Department of Biochemistry, Faculty of Biomedicine, Pirogov Russian National Research Medical University, 1, Ostrovityanova Street, 117997 Moscow, Russia;
| | - Victoria V. Shumyantseva
- Institute of Biomedical Chemistry, 10, Pogodinskaya Street, 119121 Moscow, Russia; (R.A.M.); (T.A.F.); (A.A.G.); (V.V.S.)
- Department of Biochemistry, Faculty of Biomedicine, Pirogov Russian National Research Medical University, 1, Ostrovityanova Street, 117997 Moscow, Russia;
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Koroleva PI, Bulko TV, Agafonova LE, Shumyantseva VV. Catalytic and Electrocatalytic Mechanisms of Cytochromes P450 in the Development of Biosensors and Bioreactors. BIOCHEMISTRY. BIOKHIMIIA 2023; 88:1645-1657. [PMID: 38105030 DOI: 10.1134/s0006297923100176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/23/2023] [Accepted: 08/25/2023] [Indexed: 12/19/2023]
Abstract
Cytochromes P450 are a unique family of enzymes found in all Kingdoms of living organisms (animals, bacteria, plants, fungi, and archaea), whose main function is biotransformation of exogenous and endogenous compounds. The review discusses approaches to enhancing the efficiency of electrocatalysis by cytochromes P450 for their use in biotechnology and design of biosensors and describes main methods in the development of reconstituted and electrochemical catalytic systems based on the biochemical mechanism of cytochromes P450, as well as and modern trends for their practical application.
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Affiliation(s)
| | | | | | - Victoria V Shumyantseva
- Institute of Biomedical Chemistry, Moscow, 119121, Russia.
- Pirogov Russian National Research Medical University, Moscow, 117997, Russia
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Sun X, Sun J, Ye Y, Ji J, Sheng L, Yang D, Sun X. Metabolic pathway-based self-assembled Au@MXene liver microsome electrochemical biosensor for rapid screening of aflatoxin B1. Bioelectrochemistry 2023; 151:108378. [PMID: 36774719 DOI: 10.1016/j.bioelechem.2023.108378] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 01/19/2023] [Accepted: 01/20/2023] [Indexed: 01/26/2023]
Abstract
Cytochrome P450 enzymes (CYPs) catalyze the production of aflatoxin B1 (AFB1) metabolites, which play an important role in carcinogenesis. In this study, we report a simple electrochemical liver-microsome-based biosensor using a composite of gold nanoparticles adsorbed on MXene (Au@MXene) for rapid screening of AFB1. Rat liver microsomes (RLMs) were directly adsorbed on the Au@MXene nanocomposite. The high conductivity, large specific surface area, and good biocompatibility of the Au@MXene nanocomposite enabled the direct electron transfer between the RLMs and the electrode and maintained the biological activity of the enzyme in the RLMs to a large extent. The metabolic behavior of the RLM biosensor that was developed for the electrocatalyst of AFB1 to its hydroxylation metabolite aflatoxin M1 (AFM1) was confirmed. Based on the change in the electrical signal generated by this metabolic behavior, we established the relationship between AFB1 content and amperometric (I-t) current signal. When the AFB1 concentration ranged from 0.01 μM to 50 μM, the AFB1 concentration was linearly related to the electrical signal with a limit of detection of 2.8 nM. The results of the recovery experiments for corn samples showed that the recovery and accuracy of the sensor were consistent with the UPLC-MS/MS method.
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Affiliation(s)
- Xinyu Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Jiadi Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Yongli Ye
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Jian Ji
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Lina Sheng
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Diaodiao Yang
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Xiulan Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu 214122, China.
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Koroleva PI, Gilep AA, Kraevsky SV, Tsybruk TV, Shumyantseva VV. Improving the Efficiency of Electrocatalysis of Cytochrome P450 3A4 by Modifying the Electrode with Membrane Protein Streptolysin O for Studying the Metabolic Transformations of Drugs. BIOSENSORS 2023; 13:457. [PMID: 37185532 PMCID: PMC10136652 DOI: 10.3390/bios13040457] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 03/30/2023] [Accepted: 04/02/2023] [Indexed: 05/17/2023]
Abstract
In the present work, screen-printed electrodes (SPE) modified with a synthetic surfactant, didodecyldimethylammonium bromide (DDAB) and streptolysin O (SLO) were prepared for cytochrome P450 3A4 (CYP3A4) immobilization, direct non-catalytic and catalytic electrochemistry. The immobilized CYP3A4 demonstrated a pair of redox peaks with a formal potential of -0.325 ± 0.024 V (vs. the Ag/AgCl reference electrode). The electron transfer process showed a surface-controlled mechanism ("protein film voltammetry") with an electron transfer rate constant (ks) of 0.203 ± 0.038 s-1. Electrochemical CYP3A4-mediated reaction of N-demethylation of erythromycin was explored with the following parameters: an applied potential of -0.5 V and a duration time of 20 min. The system with DDAB/SLO as the electrode modifier showed conversion of erythromycin with an efficiency higher than the electrode modified with DDAB only. Confining CYP3A4 inside the protein frame of SLO accelerated the enzymatic reaction. The increases in product formation in the reaction of the electrochemical N-demethylation of erythromycin for SPE/DDAB/CYP3A4 and SPE/DDAB/SLO/CYP3A4 were equal to 100 ± 22% and 297 ± 7%, respectively. As revealed by AFM images, the SPE/DDAB/SLO possessed a more developed surface with protein cavities in comparison with SPE/DDAB for the effective immobilization of the CYP3A4 enzyme.
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Affiliation(s)
- Polina I. Koroleva
- Institute of Biomedical Chemistry, Pogodinskaya Street, 10, Build 8, 119121 Moscow, Russia
| | - Andrei A. Gilep
- Institute of Biomedical Chemistry, Pogodinskaya Street, 10, Build 8, 119121 Moscow, Russia
- Institute of Bioorganic Chemistry of the National Academy of Sciences of Belarus, 220141 Minsk, Belarus
| | - Sergey V. Kraevsky
- Institute of Biomedical Chemistry, Pogodinskaya Street, 10, Build 8, 119121 Moscow, Russia
| | - Tatiana V. Tsybruk
- Institute of Bioorganic Chemistry of the National Academy of Sciences of Belarus, 220141 Minsk, Belarus
| | - Victoria V. Shumyantseva
- Institute of Biomedical Chemistry, Pogodinskaya Street, 10, Build 8, 119121 Moscow, Russia
- Faculty of Biomedicine, Pirogov Russian National Research Medical University, Ostrovitianov Street, 1, 117997 Moscow, Russia
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Bijimol BI, Sreelekshmy BR, Satheesh Kumar KN, Ratheesh A, Geethanjali CV, Aboobakar Shibli SM. Microbial-Inspired Surface Patterning for Selective Bacterial Actions for Enhanced Performance in Microbial Fuel Cells. ACS APPLIED BIO MATERIALS 2022; 5:5394-5409. [PMID: 36300364 DOI: 10.1021/acsabm.2c00760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The performance of any bio-electrochemical system is dependent on the efficiency of electrode-microbial interactions. Surface properties play a focal role in bacterial attachment and biofilm formation on the electrodes. In addition to electrode surface properties, selective bacterial adhesion onto the electrode surface is mandatory to mitigate energy loss due to undesired bacterial interactions on the electrode surface. In the present study, microbial-patterned graphite scaffolds are developed for selective bacterial-electrode interactions. A power density as high as 1105 mW/m2 is achieved with mG-E (a graphite electrode patterned with Escherichia coli), which is about 3 times higher than that of the pristine graphite electrode (370 mW/m2). Initial mechanical pre-treatment of the graphite electrode, followed by bacterial patterning, results in the formation of a unique cobblestone topography with a tuned surface area of 127.12 m2/g. This provides suitable morphology with enhanced active sites for selective bacterial intercalation in graphite layers. This cannot be otherwise achieved by any mechanical or other means. A unique methodology of symbolic regression is adopted to validate a genetic algorithm suitable for predicting a perfect correlation between surface characteristics and electrochemical characteristics with a minimum root-mean-square error of 0.08. The bacterial intercalation onto the graphite electrode causes protuberance of the graphite layers that reduces the surface potential and resistance, leading to high electron transfer. The study presents a unique bacterial-inspired surface patterning on the anode, which is critical for the performance of a microbial fuel cell.
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Affiliation(s)
- Babu Indira Bijimol
- Department of Chemistry, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala695 581, India
| | | | - Krishnan Nair Satheesh Kumar
- Department of Futures Studies, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala695 581, India
| | - Anjana Ratheesh
- Department of Biotechnology, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala695 581, India
| | | | - Sheik Muhammadhu Aboobakar Shibli
- Department of Chemistry, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala695 581, India.,Centre for Renewable Energy and Materials, University of Kerala, Kariavattom Campus, Thiruvananthapuram, Kerala695 581, India
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Sun X, Ye Y, Sun J, Tang L, Yang X, Sun X. Advances in the study of liver microsomes in the in vitro metabolism and toxicity evaluation of foodborne contaminants. Crit Rev Food Sci Nutr 2022; 64:3264-3278. [PMID: 36226776 DOI: 10.1080/10408398.2022.2131728] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Foodborne contaminants are closely related to anthropologic activities and represent an important food safety hazard. The study of metabolic transformation and toxic side effects of foodborne contaminants in the body is important for their safety assessment. Liver microsomes contain a variety of enzymes related to substance metabolism and biotransformation. An in vitro model simulating liver metabolic transformation is associated with a significant advantage in the study of the metabolic transformation mechanisms of contaminants. This review summarizes the recent progress in the application of liver microsomes in metabolic transformation and toxicity evaluation of various foodborne pollutants based on metabolic kinetics, molecular docking and enzyme inhibition studies. The purpose of this review is to distinguish the existing studies involving liver microsomes and provide strategies for their application in the future. Finally, the prospects and challenges of the liver microsomal model are discussed.
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Affiliation(s)
- Xinyu Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu, China
| | - Yongli Ye
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu, China
| | - Jiadi Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu, China
| | - Lili Tang
- Department of Environmental Health Science, College of Public Health, University of Georgia, Athens, Georgia, USA
| | - Xingxing Yang
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu, China
| | - Xiulan Sun
- State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Collaborative Innovation Center of Food Safety and Quality Control, Jiangnan University, Wuxi, Jiangsu, China
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