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Kuo CFJ, Chen HY, Barman J, Ko KH, Hsu HH. Complete, Fully Automatic Detection and Classification of Benign and Malignant Breast Tumors Based on CT Images Using Artificial Intelligent and Image Processing. J Clin Med 2023; 12:1582. [PMID: 36836118 PMCID: PMC9960342 DOI: 10.3390/jcm12041582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 12/09/2022] [Accepted: 12/19/2022] [Indexed: 02/19/2023] Open
Abstract
Breast cancer is the most common type of cancer in women, and early detection is important to significantly reduce its mortality rate. This study introduces a detection and diagnosis system that automatically detects and classifies breast tumors in CT scan images. First, the contours of the chest wall are extracted from computed chest tomography images, and two-dimensional image characteristics and three-dimensional image features, together with the application of active contours without edge and geodesic active contours methods, are used to detect, locate, and circle the tumor. Then, the computer-assisted diagnostic system extracts features, quantifying and classifying benign and malignant breast tumors using a greedy algorithm and a support vector machine. The study used 174 breast tumors for experiment and training and performed cross-validation 10 times (k-fold cross-validation) to evaluate performance of the system. The accuracy, sensitivity, specificity, and positive and negative predictive values of the system were 99.43%, 98.82%, 100%, 100%, and 98.89% respectively. This system supports the rapid extraction and classification of breast tumors as either benign or malignant, helping physicians to improve clinical diagnosis.
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Affiliation(s)
- Chung-Feng Jeffrey Kuo
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Hsuan-Yu Chen
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Jagadish Barman
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Kai-Hsiung Ko
- Department of Radiology, Tri-Service General Hospital, National Defense Medical Center, Taipei 114, Taiwan
| | - Hsian-He Hsu
- Department of Radiology, Tri-Service General Hospital, National Defense Medical Center, Taipei 114, Taiwan
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Meyer‐Base A, Morra L, Tahmassebi A, Lobbes M, Meyer‐Base U, Pinker K. AI-Enhanced Diagnosis of Challenging Lesions in Breast MRI: A Methodology and Application Primer. J Magn Reson Imaging 2021; 54:686-702. [PMID: 32864782 PMCID: PMC8451829 DOI: 10.1002/jmri.27332] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Revised: 07/30/2020] [Accepted: 07/31/2020] [Indexed: 12/11/2022] Open
Abstract
Computer-aided diagnosis (CAD) systems have become an important tool in the assessment of breast tumors with magnetic resonance imaging (MRI). CAD systems can be used for the detection and diagnosis of breast tumors as a "second opinion" review complementing the radiologist's review. CAD systems have many common parts, such as image preprocessing, tumor feature extraction, and data classification that are mostly based on machine-learning (ML) techniques. In this review article, we describe applications of ML-based CAD systems in MRI covering the detection of diagnostically challenging lesions of the breast such as nonmass enhancing (NME) lesions, and furthermore discuss how multiparametric MRI and radiomics can be applied to the study of NME, including prediction of response to neoadjuvant chemotherapy (NAC). Since ML has been widely used in the medical imaging community, we provide an overview about the state-of-the-art and novel techniques applied as classifiers to CAD systems. The differences in the CAD systems in MRI of the breast for several standard and novel applications for NME are explained in detail to provide important examples, illustrating: 1) CAD for detection and diagnosis, 2) CAD in multiparametric imaging, 3) CAD in NAC, and 4) breast cancer radiomics. We aim to provide a comparison between these CAD applications and to illustrate a global view on intelligent CAD systems based on machine and deep learning in MRI of the breast. LEVEL OF EVIDENCE: 2 TECHNICAL EFFICACY STAGE: 2.
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Affiliation(s)
- Anke Meyer‐Base
- Department of Scientific ComputingFlorida State UniversityTallahasseeFloridaUSA
- Department of Radiology, Maastricht Medical CenterUniversity of MaastrichtMaastrichtNetherlands
| | - Lia Morra
- Department of Control and Computer EngineeringPolitecnico di TorinoTorinoItaly
| | | | - Marc Lobbes
- Department of Radiology, Maastricht Medical CenterUniversity of MaastrichtMaastrichtNetherlands
- GROW School for Oncology and Developmental BiologyMaastrichtNetherlands
- Zuyderland Medical Center, dep of Medical ImagingSittard‐GeleenNetherlands
| | - Uwe Meyer‐Base
- Department of Electrical and Computer EngineeringFlorida A&M University and Florida State UniversityTallahasseeFloridaUSA
| | - Katja Pinker
- Department of Radiology, Breast Imaging ServiceMemorial Sloan‐Kettering Cancer CenterNew YorkNew YorkUSA
- Department of Biomedical Imaging and Image‐Guided Therapy, Division of Molecular and Gender ImagingMedical University of ViennaViennaAustria
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3
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A fully-automated computer-aided breast lesion detection and classification system. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2020.102157] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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4
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Meyer-Bäse A, Morra L, Meyer-Bäse U, Pinker K. Current Status and Future Perspectives of Artificial Intelligence in Magnetic Resonance Breast Imaging. CONTRAST MEDIA & MOLECULAR IMAGING 2020; 2020:6805710. [PMID: 32934610 PMCID: PMC7474774 DOI: 10.1155/2020/6805710] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 04/17/2020] [Accepted: 05/28/2020] [Indexed: 12/12/2022]
Abstract
Recent advances in artificial intelligence (AI) and deep learning (DL) have impacted many scientific fields including biomedical maging. Magnetic resonance imaging (MRI) is a well-established method in breast imaging with several indications including screening, staging, and therapy monitoring. The rapid development and subsequent implementation of AI into clinical breast MRI has the potential to affect clinical decision-making, guide treatment selection, and improve patient outcomes. The goal of this review is to provide a comprehensive picture of the current status and future perspectives of AI in breast MRI. We will review DL applications and compare them to standard data-driven techniques. We will emphasize the important aspect of developing quantitative imaging biomarkers for precision medicine and the potential of breast MRI and DL in this context. Finally, we will discuss future challenges of DL applications for breast MRI and an AI-augmented clinical decision strategy.
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Affiliation(s)
- Anke Meyer-Bäse
- Department of Scientific Computing, Florida State University, Tallahassee, Florida 32310-4120, USA
| | - Lia Morra
- Dipartimento di Automatica e Informatica, Politecnico di Torino, Torino, Italy
| | - Uwe Meyer-Bäse
- Department of Electrical and Computer Engineering, Florida A&M University and Florida State University, Tallahassee, Florida 32310-4120, USA
| | - Katja Pinker
- Department of Biomedical Imaging and Image-Guided Therapy, Division of Molecular and Gender Imaging, Medical University of Vienna, Vienna, Austria
- Department of Radiology, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA
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5
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Çetinel G, Mutlu F, Gül S. Decision support system for breast lesions via dynamic contrast enhanced magnetic resonance imaging. Phys Eng Sci Med 2020; 43:1029-1048. [PMID: 32691326 DOI: 10.1007/s13246-020-00902-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2019] [Accepted: 07/12/2020] [Indexed: 10/23/2022]
Abstract
The presented study aims to design a computer-aided detection and diagnosis system for breast dynamic contrast enhanced magnetic resonance imaging. In the proposed system, the segmentation task is performed in two stages. The first stage is called breast region segmentation in which adaptive noise filtering, local adaptive thresholding, connected component analysis, integral of horizontal projection, and breast region of interest detection algorithms are applied to the breast images consecutively. The second stage of segmentation is breast lesion detection that consists of 32-class Otsu thresholding and Markov random field techniques. Histogram, gray level co-occurrence matrix and neighboring gray tone difference matrix based feature extraction, Fisher score based feature selection and, tenfold and leave-one-out cross-validation steps are carried out after segmentation to increase the reliability of the designed system while decreasing the computational time. Finally, support vector machines, k- nearest neighbor, and artificial neural network classifiers are performed to separate the breast lesions as benign and malignant. The average accuracy, sensitivity, specificity, and positive predictive values of each classifier are calculated and the best results are compared with the existing similar studies. According to the achieved results, the proposed decision support system for breast lesion segmentation distinguishes the breast lesions with 86%, 100%, 67%, and 85% accuracy, sensitivity, specificity, and positive predictive values, respectively. These results show that the proposed system can be used to support the radiologists during a breast cancer diagnosis.
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Affiliation(s)
- Gökçen Çetinel
- Department of Electrical and Electronics Engineering, Faculty of Engineering, Sakarya University, Sakarya, Turkey.
| | - Fuldem Mutlu
- Internal Medical Sciences, Radiology Department, Education and Research Hospital, Sakarya University, Sakarya, Turkey
| | - Sevda Gül
- Department of Electronics and Automation, Adapazarı Vocational High School, Sakarya University, Sakarya, Turkey
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Verburg E, Wolterink JM, Waard SN, Išgum I, Gils CH, Veldhuis WB, Gilhuijs KGA. Knowledge‐based and deep learning‐based automated chest wall segmentation in magnetic resonance images of extremely dense breasts. Med Phys 2019; 46:4405-4416. [DOI: 10.1002/mp.13699] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Revised: 06/21/2019] [Accepted: 06/26/2019] [Indexed: 11/07/2022] Open
Affiliation(s)
- Erik Verburg
- Image Sciences Institute University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Jelmer M. Wolterink
- Image Sciences Institute University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Stephanie N. Waard
- Department of Radiology University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Ivana Išgum
- Image Sciences Institute University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Carla H. Gils
- Julius Center for Health Sciences and Primary Care University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Wouter B. Veldhuis
- Department of Radiology University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
| | - Kenneth G. A. Gilhuijs
- Image Sciences Institute University Medical Center Utrecht, Utrecht University Utrecht 3584 CX the Netherlands
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Rampun A, Scotney BW, Morrow PJ, Wang H, Winder J. Segmentation of breast MR images using a generalised 2D mathematical model with inflation and deflation forces of active contours. Artif Intell Med 2019; 97:44-60. [DOI: 10.1016/j.artmed.2018.10.007] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 09/26/2018] [Accepted: 10/23/2018] [Indexed: 11/28/2022]
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Pandey D, Yin X, Wang H, Su MY, Chen JH, Wu J, Zhang Y. Automatic and fast segmentation of breast region-of-interest (ROI) and density in MRIs. Heliyon 2018; 4:e01042. [PMID: 30582055 PMCID: PMC6299131 DOI: 10.1016/j.heliyon.2018.e01042] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 11/04/2018] [Accepted: 12/10/2018] [Indexed: 12/13/2022] Open
Abstract
Accurate segmentation of the breast region of interest (BROI) and breast density (BD) is a significant challenge during the analysis of breast MR images. Most of the existing methods for breast segmentation are semi-automatic and limited in their ability to achieve accurate results. This is because of difficulties in removing landmarks from noisy magnetic resonance images (MRI) due to similar intensity levels and the close connection to BROI. This study proposes an innovative, fully automatic and fast segmentation approach to identify and remove landmarks such as the heart and pectoral muscles. The BROI segmentation is carried out with a framework consisting of three major steps. Firstly, we use adaptive wiener filtering and k-means clustering to minimize the influence of noises, preserve edges and remove unwanted artefacts. The second step systematically excludes the heart area by utilizing active contour based level sets where initial contour points are determined by the maximum entropy thresholding and convolution method. Finally, a pectoral muscle is removed by using morphological operations and local adaptive thresholding on MR images. Prior to the elimination of the pectoral muscle, the MR image is sub divided into three sections: left, right, and central based on the geometrical information. Subsequently, a BD segmentation is achieved with 4 level fuzzy c-means (FCM) thresholding on the denoised BROI segmentation. The proposed method is validated using the 1350 breast images from 15 female subjects. The pixel-based quantitative analysis showed excellent segmentation results when compared with manually drawn BROI and BD. Furthermore, the presented results in terms of evaluation matrices: Acc, Sp, AUC, MR, P, Se and DSC demonstrate the high quality of segmentations using the proposed method. The average computational time for the segmentation of BROI and BD is 1 minute and 50 seconds.
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Affiliation(s)
- Dinesh Pandey
- Institute for Sustainable Industries and Liveable Cities, Victoria University, Melbourne, Australia
| | - Xiaoxia Yin
- Cyberspace Institute of Advanced Technology (CIAT), Guangzhou University, Guangzhou 510006, China
| | - Hua Wang
- Institute for Sustainable Industries and Liveable Cities, Victoria University, Melbourne, Australia
| | - Min-Ying Su
- Tu and Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, CA, United States of America
| | - Jeon-Hor Chen
- Tu and Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, CA, United States of America
- Department of Radiology, E-Da Hospital and I-Shou University, Kaohsiung, Taiwan
| | - Jianlin Wu
- Department of Radiology, Zhongshan Hospital of Dalian University, Dalian, Liaoning, China
| | - Yanchun Zhang
- Institute for Sustainable Industries and Liveable Cities, Victoria University, Melbourne, Australia
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Banaie M, Soltanian-Zadeh H, Saligheh-Rad HR, Gity M. Spatiotemporal features of DCE-MRI for breast cancer diagnosis. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 155:153-164. [PMID: 29512495 DOI: 10.1016/j.cmpb.2017.12.015] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 11/09/2017] [Accepted: 12/12/2017] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND OBJECTIVE Breast cancer is a major cause of mortality among women if not treated in early stages. Previous works developed non-invasive diagnosis methods using imaging data, focusing on specific sets of features that can be called spatial features or temporal features. However, limited set of features carry limited information, requiring complex classification methods to diagnose the disease. For non-invasive diagnosis, different imaging modalities can be used. DCE-MRI is one of the best imaging techniques that provides temporal information about the kinetics of the contrast agent in suspicious lesions along with acceptable spatial resolution. METHODS We have extracted and studied a comprehensive set of features from spatiotemporal space to obtain maximum available information from the DCE-MRI data. Then, we have applied a feature fusion technique to remove common information and extract a feature set with maximum information to be used by a simple classification method. We have also implemented conventional feature selection and classification methods and compared them with our proposed approach. RESULTS Experimental results obtained from DCE-MRI data of 26 biopsy or short-term follow-up proven patients illustrate that the proposed method outperforms alternative methods. The proposed method achieves a classification accuracy of 99% without missing any of the malignant cases. CONCLUSIONS The proposed method may help physicians determine the likelihood of malignancy in breast cancer using DCE-MRI without biopsy.
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Affiliation(s)
- Masood Banaie
- Control and Intelligent Processing Center of Excellence (CIPCE), School of Electrical and Computer Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Hamid Soltanian-Zadeh
- Control and Intelligent Processing Center of Excellence (CIPCE), School of Electrical and Computer Engineering, College of Engineering, University of Tehran, Tehran, Iran; Image Analysis Laboratory, Departments of Radiology and Research Administration, Henry Ford Health System, Detroit, MI, USA.
| | - Hamid-Reza Saligheh-Rad
- Department of Medical Physics and Biomedical Engineering, School of Medicine, Tehran University of Medical Science, Tehran, Iran
| | - Masoumeh Gity
- Advanced Diagnostic and Interventional Radiology Research Center (ADIR), Medical Imaging Center, Imam Khomeini Hospital, Tehran University of Medical Sciences, Tehran, Iran
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Thakran S, Chatterjee S, Singhal M, Gupta RK, Singh A. Automatic outer and inner breast tissue segmentation using multi-parametric MRI images of breast tumor patients. PLoS One 2018; 13:e0190348. [PMID: 29320532 PMCID: PMC5761869 DOI: 10.1371/journal.pone.0190348] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 12/13/2017] [Indexed: 11/22/2022] Open
Abstract
The objectives of the study were to develop a framework for automatic outer and inner breast tissue segmentation using multi-parametric MRI images of the breast tumor patients; and to perform breast density and tumor tissue analysis. MRI of the breast was performed on 30 patients at 3T-MRI. T1, T2 and PD-weighted(W) images, with and without fat saturation(WWFS), and dynamic-contrast-enhanced(DCE)-MRI data were acquired. The proposed automatic segmentation approach was performed in two steps. In step-1, outer segmentation of breast tissue from rest of body parts was performed on structural images (T2-W/T1-W/PD-W without fat saturation images) using automatic landmarks detection technique based on operations like profile screening, Otsu thresholding, morphological operations and empirical observation. In step-2, inner segmentation of breast tissue into fibro-glandular(FG), fatty and tumor tissue was performed. For validation of breast tissue segmentation, manual segmentation was carried out by two radiologists and similarity coefficients(Dice and Jaccard) were computed for outer as well as inner tissues. FG density and tumor volume were also computed and analyzed. The proposed outer and inner segmentation approach worked well for all the subjects and was validated by two radiologists. The average Dice and Jaccard coefficients value for outer segmentation using T2-W images, obtained by two radiologists, were 0.977 and 0.951 respectively. These coefficient values for FG tissue were 0.915 and 0.875 respectively whereas for tumor tissue, values were 0.968 and 0.95 respectively. The volume of segmented tumor ranged over 2.1 cm3–7.08 cm3. The proposed approach provided automatic outer and inner breast tissue segmentation, which enables automatic calculations of breast tissue density and tumor volume. This is a complete framework for outer and inner breast segmentation method for all structural images.
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Affiliation(s)
- Snekha Thakran
- Centre for Biomedical Engineering, Indian Institute of Technology Delhi, New Delhi, India
| | - Subhajit Chatterjee
- Department of Computer Science and Engineering, Indian Institute of Technology Delhi, New Delhi, India
| | - Meenakshi Singhal
- Department of Radiology, Fortis Memorial Research Institute, Gurgaon, India
| | - Rakesh Kumar Gupta
- Department of Radiology, Fortis Memorial Research Institute, Gurgaon, India
| | - Anup Singh
- Centre for Biomedical Engineering, Indian Institute of Technology Delhi, New Delhi, India.,Department of Biomedical Engineering, All India Institute of Medical Sciences Delhi, New Delhi, India
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Janaki SD, Geetha K. Automatic segmentation of lesion from breast DCE-MR image using artificial fish swarm optimization algorithm. POLISH JOURNAL OF MEDICAL PHYSICS AND ENGINEERING 2017. [DOI: 10.1515/pjmpe-2017-0006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Interpreting Dynamic Contrast-Enhanced (DCE) MR images for signs of breast cancer is time consuming and complex, since the amount of data that needs to be examined by a radiologist in breast DCE-MRI to locate suspicious lesions is huge. Misclassifications can arise from either overlooking a suspicious region or from incorrectly interpreting a suspicious region. The segmentation of breast DCE-MRI for suspicious lesions in detection is thus attractive, because it drastically decreases the amount of data that needs to be examined. The new segmentation method for detection of suspicious lesions in DCE-MRI of the breast tissues is based on artificial fishes swarm clustering algorithm is presented in this paper. Artificial fish swarm optimization algorithm is a swarm intelligence algorithm, which performs a search based on population and neighborhood search combined with random search. The major criteria for segmentation are based on the image voxel values and the parameters of an empirical parametric model of segmentation algorithms. The experimental results show considerable impact on the performance of the segmentation algorithm, which can assist the physician with the task of locating suspicious regions at minimal time.
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Affiliation(s)
- Sathya D. Janaki
- Department of Electrical & Electronics Engineering, PSG College of Technology, Coimbatore , India
| | - K. Geetha
- Department of Electrical & Electronics Engineering, Karpagam Institute of Technology, Coimbatore , India
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12
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Jiang L, Hu X, Xiao Q, Gu Y, Li Q. Fully automated segmentation of whole breast using dynamic programming in dynamic contrast enhanced MR images. Med Phys 2017; 44:2400-2414. [DOI: 10.1002/mp.12254] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2016] [Revised: 03/14/2017] [Accepted: 03/25/2017] [Indexed: 01/09/2023] Open
Affiliation(s)
- Luan Jiang
- Center for Advanced Medical Imaging Technology; Division of Life Sciences; Shanghai Advanced Research Institute; Chinese Academy of Sciences; No. 99 Haike Road Shanghai 201210 China
- Cooperate Research Center; Shanghai United Imaging Healthcare Co., Ltd.; No. 2258 Chengbei Road Shanghai 201807 China
| | - Xiaoxin Hu
- Department of Radiology; Shanghai Cancer Hospital of FuDan University; No. 270 DongAn Road Shanghai 200032 China
| | - Qin Xiao
- Department of Radiology; Shanghai Cancer Hospital of FuDan University; No. 270 DongAn Road Shanghai 200032 China
| | - Yajia Gu
- Department of Radiology; Shanghai Cancer Hospital of FuDan University; No. 270 DongAn Road Shanghai 200032 China
| | - Qiang Li
- Center for Advanced Medical Imaging Technology; Division of Life Sciences; Shanghai Advanced Research Institute; Chinese Academy of Sciences; No. 99 Haike Road Shanghai 201210 China
- Cooperate Research Center; Shanghai United Imaging Healthcare Co., Ltd.; No. 2258 Chengbei Road Shanghai 201807 China
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Pujara AC, Mikheev A, Rusinek H, Rallapalli H, Walczyk J, Gao Y, Chhor C, Pysarenko K, Babb JS, Melsaether AN. Clinical applicability and relevance of fibroglandular tissue segmentation on routine T1 weighted breast MRI. Clin Imaging 2017; 42:119-125. [DOI: 10.1016/j.clinimag.2016.12.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Revised: 11/07/2016] [Accepted: 12/02/2016] [Indexed: 10/20/2022]
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Localized-atlas-based segmentation of breast MRI in a decision-making framework. AUSTRALASIAN PHYSICAL & ENGINEERING SCIENCES IN MEDICINE 2017; 40:69-84. [PMID: 28116639 DOI: 10.1007/s13246-016-0513-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Accepted: 12/01/2016] [Indexed: 12/27/2022]
Abstract
Breast-region segmentation is an important step for density estimation and Computer-Aided Diagnosis (CAD) systems in Magnetic Resonance Imaging (MRI). Detection of breast-chest wall boundary is often a difficult task due to similarity between gray-level values of fibroglandular tissue and pectoral muscle. This paper proposes a robust breast-region segmentation method which is applicable for both complex cases with fibroglandular tissue connected to the pectoral muscle, and simple cases with high contrast boundaries. We present a decision-making framework based on geometric features and support vector machine (SVM) to classify breasts in two main groups, complex and simple. For complex cases, breast segmentation is done using a combination of intensity-based and atlas-based techniques; however, only intensity-based operation is employed for simple cases. A novel atlas-based method, that is called localized-atlas, accomplishes the processes of atlas construction and registration based on the region of interest (ROI). Atlas-based segmentation is performed by relying on the chest wall template. Our approach is validated using a dataset of 210 cases. Based on similarity between automatic and manual segmentation results, the proposed method achieves Dice similarity coefficient, Jaccard coefficient, total overlap, false negative, and false positive values of 96.3, 92.9, 97.4, 2.61 and 4.77%, respectively. The localization error of the breast-chest wall boundary is 1.97 mm, in terms of averaged deviation distance. The achieved results prove that the suggested framework performs the breast segmentation with negligible errors and efficient computational time for different breasts from the viewpoints of size, shape, and density pattern.
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Hybrid Mass Detection in Breast MRI Combining Unsupervised Saliency Analysis and Deep Learning. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION − MICCAI 2017 2017. [DOI: 10.1007/978-3-319-66179-7_68] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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16
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Principles and methods for automatic and semi-automatic tissue segmentation in MRI data. MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE 2016; 29:95-110. [DOI: 10.1007/s10334-015-0520-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2015] [Revised: 12/09/2015] [Accepted: 12/10/2015] [Indexed: 11/26/2022]
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17
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Imaging Breast Density: Established and Emerging Modalities. Transl Oncol 2015; 8:435-45. [PMID: 26692524 PMCID: PMC4700291 DOI: 10.1016/j.tranon.2015.10.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Revised: 09/30/2015] [Accepted: 10/06/2015] [Indexed: 11/23/2022] Open
Abstract
Mammographic density has been proven as an independent risk factor for breast cancer. Women with dense breast tissue visible on a mammogram have a much higher cancer risk than women with little density. A great research effort has been devoted to incorporate breast density into risk prediction models to better estimate each individual’s cancer risk. In recent years, the passage of breast density notification legislation in many states in USA requires that every mammography report should provide information regarding the patient’s breast density. Accurate definition and measurement of breast density are thus important, which may allow all the potential clinical applications of breast density to be implemented. Because the two-dimensional mammography-based measurement is subject to tissue overlapping and thus not able to provide volumetric information, there is an urgent need to develop reliable quantitative measurements of breast density. Various new imaging technologies are being developed. Among these new modalities, volumetric mammographic density methods and three-dimensional magnetic resonance imaging are the most well studied. Besides, emerging modalities, including different x-ray–based, optical imaging, and ultrasound-based methods, have also been investigated. All these modalities may either overcome some fundamental problems related to mammographic density or provide additional density and/or compositional information. The present review article aimed to summarize the current established and emerging imaging techniques for the measurement of breast density and the evidence of the clinical use of these density methods from the literature.
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18
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Automated breast-region segmentation in the axial breast MR images. Comput Biol Med 2015; 62:55-64. [DOI: 10.1016/j.compbiomed.2015.04.001] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2014] [Revised: 03/09/2015] [Accepted: 04/01/2015] [Indexed: 11/24/2022]
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Rosado-Toro JA, Barr T, Galons JP, Marron MT, Stopeck A, Thomson C, Thompson P, Carroll D, Wolf E, Altbach MI, Rodríguez JJ. Automated breast segmentation of fat and water MR images using dynamic programming. Acad Radiol 2015; 22:139-48. [PMID: 25572926 PMCID: PMC4366060 DOI: 10.1016/j.acra.2014.09.015] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2014] [Revised: 09/23/2014] [Accepted: 09/26/2014] [Indexed: 11/18/2022]
Abstract
RATIONALE AND OBJECTIVES To develop and test an algorithm that outlines the breast boundaries using information from fat and water magnetic resonance images. MATERIALS AND METHODS Three algorithms were implemented and tested using registered fat and water magnetic resonance images. Two of the segmentation algorithms are simple extensions of the techniques used for contrast-enhanced images: one algorithm uses clustering and local gradient (CLG) analysis and the other algorithm uses a Hessian-based sheetness filter (HSF). The third segmentation algorithm uses k-means++ and dynamic programming (KDP) for finding the breast pixels. All three algorithms separate the left and right breasts using either a fixed region or a morphological method. The performance is quantified using a mutual overlap (Dice) metric and a pectoral muscle boundary error. The algorithms are evaluated against three manual tracers using 266 breast images from 14 female subjects. RESULTS The KDP algorithm has a mean overlap percentage improvement that is statistically significant relative to the HSF and CLG algorithms. When using a fixed region to remove the tissue between breasts with tracer 1 as a reference, the KDP algorithm has a mean overlap of 0.922 compared to 0.864 (P < .01) for HSF and 0.843 (P < .01) for CLG. The performance of KDP is very similar to tracers 2 (0.926 overlap) and 3 (0.929 overlap). The performance analysis in terms of pectoral muscle boundary error showed that the fraction of the muscle boundary within three pixels of reference tracer 1 is 0.87 using KDP compared to 0.578 for HSF and 0.617 for CLG. Our results show that the performance of the KDP algorithm is independent of breast density. CONCLUSIONS We developed a new automated segmentation algorithm (KDP) to isolate breast tissue from magnetic resonance fat and water images. KDP outperforms the other techniques that focus on local analysis (CLG and HSF) and yields a performance similar to human tracers.
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Affiliation(s)
- José A Rosado-Toro
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, Arizona 85721
| | - Tomoe Barr
- Department of Biomedical Engineering, University of Arizona, Tucson, Arizona 85721
| | | | | | - Alison Stopeck
- Arizona Cancer Center, Tucson, Arizona 85721; Department of Medicine, University of Arizona, Tucson, Arizona 85724
| | | | - Patricia Thompson
- Arizona Cancer Center, Tucson, Arizona 85721; Department of Cellular and Molecular Medicine, University of Arizona, Tucson, Arizona 85721
| | - Danielle Carroll
- Department of Medical Imaging, University of Arizona, Tucson, AZ 85724
| | - Eszter Wolf
- Department of Medical Imaging, University of Arizona, Tucson, AZ 85724
| | - María I Altbach
- Department of Medical Imaging, University of Arizona, Tucson, AZ 85724.
| | - Jeffrey J Rodríguez
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, Arizona 85721
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McClymont D, Mehnert A, Trakic A, Kennedy D, Crozier S. Fully automatic lesion segmentation in breast MRI using mean-shift and graph-cuts on a region adjacency graph. J Magn Reson Imaging 2014; 39:795-804. [PMID: 24783238 DOI: 10.1002/jmri.24229] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
PURPOSE To present and evaluate a fully automatic method for segmentation (i.e., detection and delineation) of suspicious tissue in breast MRI. MATERIALS AND METHODS The method, based on mean-shift clustering and graph-cuts on a region adjacency graph, was developed and its parameters tuned using multimodal (T1, T2, DCE-MRI) clinical breast MRI data from 35 subjects (training data). It was then tested using two data sets. Test set 1 comprises data for 85 subjects (93 lesions) acquired using the same protocol and scanner system used to acquire the training data. Test set 2 comprises data for eight subjects (nine lesions) acquired using a similar protocol but a different vendor's scanner system. Each lesion was manually delineated in three-dimensions by an experienced breast radiographer to establish segmentation ground truth. The regions of interest identified by the method were compared with the ground truth and the detection and delineation accuracies quantitatively evaluated. RESULTS One hundred percent of the lesions were detected with a mean of 4.5 ± 1.2 false positives per subject. This false-positive rate is nearly 50% better than previously reported for a fully automatic breast lesion detection system. The median Dice coefficient for Test set 1 was 0.76 (interquartile range, 0.17), and 0.75 (interquartile range, 0.16) for Test set 2. CONCLUSION The results demonstrate the efficacy and accuracy of the proposed method as well as its potential for direct application across different MRI systems. It is (to the authors' knowledge) the first fully automatic method for breast lesion detection and delineation in breast MRI.
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Lin M, Chen JH, Wang X, Chan S, Chen S, Su MY. Template-based automatic breast segmentation on MRI by excluding the chest region. Med Phys 2014; 40:122301. [PMID: 24320532 DOI: 10.1118/1.4828837] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Methods for quantification of breast density on MRI using semiautomatic approaches are commonly used. In this study, the authors report on a fully automatic chest template-based method. METHODS Nonfat-suppressed breast MR images from 31 healthy women were analyzed. Among them, one case was randomly selected and used as the template, and the remaining 30 cases were used for testing. Unlike most model-based breast segmentation methods that use the breast region as the template, the chest body region on a middle slice was used as the template. Within the chest template, three body landmarks (thoracic spine and bilateral boundary of the pectoral muscle) were identified for performing the initial V-shape cut to determine the posterior lateral boundary of the breast. The chest template was mapped to each subject's image space to obtain a subject-specific chest model for exclusion. On the remaining image, the chest wall muscle was identified and excluded to obtain clean breast segmentation. The chest and muscle boundaries determined on the middle slice were used as the reference for the segmentation of adjacent slices, and the process continued superiorly and inferiorly until all 3D slices were segmented. The segmentation results were evaluated by an experienced radiologist to mark voxels that were wrongly included or excluded for error analysis. RESULTS The breast volumes measured by the proposed algorithm were very close to the radiologist's corrected volumes, showing a % difference ranging from 0.01% to 3.04% in 30 tested subjects with a mean of 0.86% ± 0.72%. The total error was calculated by adding the inclusion and the exclusion errors (so they did not cancel each other out), which ranged from 0.05% to 6.75% with a mean of 3.05% ± 1.93%. The fibroglandular tissue segmented within the breast region determined by the algorithm and the radiologist were also very close, showing a % difference ranging from 0.02% to 2.52% with a mean of 1.03% ± 1.03%. The total error by adding the inclusion and exclusion errors ranged from 0.16% to 11.8%, with a mean of 2.89% ± 2.55%. CONCLUSIONS The automatic chest template-based breast MRI segmentation method worked well for cases with different body and breast shapes and different density patterns. Compared to the radiologist-established truth, the mean difference in segmented breast volume was approximately 1%, and the total error by considering the additive inclusion and exclusion errors was approximately 3%. This method may provide a reliable tool for MRI-based segmentation of breast density.
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Affiliation(s)
- Muqing Lin
- Tu & Yuen Center for Functional Onco-Imaging, Department of Radiological Sciences, University of California, Irvine, California 92697-5020 and National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, 518060 China
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Al-Faris AQ, Ngah UK, Isa NAM, Shuaib IL. Computer-aided segmentation system for breast MRI tumour using modified automatic seeded region growing (BMRI-MASRG). J Digit Imaging 2014; 27:133-44. [PMID: 24100762 PMCID: PMC3903976 DOI: 10.1007/s10278-013-9640-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Abstract
In this paper, an automatic computer-aided detection system for breast magnetic resonance imaging (MRI) tumour segmentation will be presented. The study is focused on tumour segmentation using the modified automatic seeded region growing algorithm with a variation of the automated initial seed and threshold selection methodologies. Prior to that, some pre-processing methodologies are involved. Breast skin is detected and deleted using the integration of two algorithms, namely the level set active contour and morphological thinning. The system is applied and tested on 40 test images from the RIDER breast MRI dataset, the results are evaluated and presented in comparison to the ground truths of the dataset. The analysis of variance (ANOVA) test shows that there is a statistically significance in the performance compared to the previous segmentation approaches that have been tested on the same dataset where ANOVA p values for the evaluation measures' results are less than 0.05, such as: relative overlap (p = 0.0002), misclassification rate (p = 0.045), true negative fraction (p = 0.0001) and sum of true volume fraction (p = 0.0001).
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Affiliation(s)
- Ali Qusay Al-Faris
- />Imaging and Computational Intelligence Research Group (ICI), School of Electrical & Electronic Engineering, Universiti Sains Malaysia, Penang, Malaysia
| | - Umi Kalthum Ngah
- />Imaging and Computational Intelligence Research Group (ICI), School of Electrical & Electronic Engineering, Universiti Sains Malaysia, Penang, Malaysia
| | - Nor Ashidi Mat Isa
- />Imaging and Computational Intelligence Research Group (ICI), School of Electrical & Electronic Engineering, Universiti Sains Malaysia, Penang, Malaysia
| | - Ibrahim Lutfi Shuaib
- />Advanced Medical and Dental Institute (AMDI), Universiti Sains Malaysia, Penang, Malaysia
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Breast MRI Tumour Segmentation Using Modified Automatic Seeded Region Growing Based on Particle Swarm Optimization Image Clustering. ADVANCES IN INTELLIGENT SYSTEMS AND COMPUTING 2014. [DOI: 10.1007/978-3-319-00930-8_5] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Wu S, Weinstein SP, Conant EF, Schnall MD, Kontos D. Automated chest wall line detection for whole-breast segmentation in sagittal breast MR images. Med Phys 2013; 40:042301. [PMID: 23556914 DOI: 10.1118/1.4793255] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
PURPOSE Breast magnetic resonance imaging (MRI) plays an important role in the clinical management of breast cancer. Computerized analysis is increasingly used to quantify breast MRI features in applications such as computer-aided lesion detection and fibroglandular tissue estimation for breast cancer risk assessment. Automated segmentation of the whole-breast as an organ from the other parts imaged is an important step in aiding lesion localization and fibroglandular tissue quantification. For this task, identifying the chest wall line (CWL) is most challenging due to image contrast variations, intensity discontinuity, and bias field. METHODS In this work, the authors develop and validate a fully automated image processing algorithm for accurate delineation of the CWL in sagittal breast MRI. The CWL detection is based on an integrated scheme of edge extraction and CWL candidate evaluation. The edge extraction consists of applying edge-enhancing filters and an edge linking algorithm. Increased accuracy is achieved by the synergistic use of multiple image inputs for edge extraction, where multiple CWL candidates are evaluated by the dynamic time warping algorithm coupled with the construction of a CWL reference. Their method is quantitatively validated by a dataset of 60 3D bilateral sagittal breast MRI scans (in total 3360 2D MR slices) that span the full American College of Radiology Breast Imaging Reporting and Data System (BI-RADS) breast density range. Agreement with manual segmentation obtained by an experienced breast imaging radiologist is assessed by both volumetric and boundary-based metrics, including four quantitative measures. RESULTS In terms of breast volume agreement with manual segmentation, the overlay percentage expressed by the Dice's similarity coefficient is 95.0% and the difference percentage is 10.1%. More specifically, for the segmentation accuracy of the CWL boundary, the CWL overlay percentage is 92.7% and averaged deviation distance is 2.3 mm. Their method requires ≈ 4.5 min for segmenting each 3D breast MRI scan (56 slices) in comparison to ≈ 35 min required for manual segmentation. Further analysis indicates that the segmentation performance of their method is relatively stable across the different BI-RADS density categories and breast volume, and also robust with respect to a varying range of the major parameters of the algorithm. CONCLUSIONS Their fully automated method achieves high segmentation accuracy in a time-efficient manner. It could support large scale quantitative breast MRI analysis and holds the potential to become integrated into the clinical workflow for breast cancer clinical applications in the future.
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Affiliation(s)
- Shandong Wu
- Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
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26
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Wang Y, Morrell G, Heibrun ME, Payne A, Parker DL. 3D multi-parametric breast MRI segmentation using hierarchical support vector machine with coil sensitivity correction. Acad Radiol 2013; 20:137-47. [PMID: 23099241 DOI: 10.1016/j.acra.2012.08.016] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2012] [Revised: 08/13/2012] [Accepted: 08/14/2012] [Indexed: 10/27/2022]
Abstract
RATIONALE AND OBJECTIVES The goal of the study is to develop a technique to achieve accurate volumetric breast tissue segmentation using magnetic resonance imaging (MRI) data. This segmentation can be useful to aid in the diagnosis of breast cancers and to assess breast cancer risk based on breast density. Tissue segmentation is also essential for development of acoustic and thermal models used in magnetic resonance guided high-intensity focused ultrasound treatment of breast lesions. MATERIALS AND METHODS In addition to commonly used T1-, T2-, and proton density-weighted images, three-point Dixon water- and fat-only images were also included as part of the multiparametric inputs to a tissue segmentation algorithm using a hierarchical support vector machine (SVM). The effectiveness of a variety of preprocessing schemes was evaluated through two in vivo datasets. The performance of the hierarchical SVM was investigated and compared to the conventional classification algorithms-conventional SVM and fuzzy C-mean (FCM). RESULTS The need for co-registration, zero-filled interpolation, coil sensitivity correction, and optimal SNR reconstruction before the final stage classification was demonstrated. The overlap ratios of the hierarchical SVM, conventional SVM and FCM were 93.25%-94.08%, 81.68-92.28%, and 75.96%-91.02%, respectively. Classification outputs from in vivo experiments showed that the presented methodology is consistent and outperforms other algorithms. CONCLUSION The presented hierarchical SVM-based technique showed promising results in automatically segmenting breast tissues into fat, fibroglandular tissue, skin, and lesions. The results provide evidence that both the multiparametric breast MRI inputs and the preprocessing procedures contribute to the high accuracy of tissue classification.
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Hemorrhage detection and segmentation in traumatic pelvic injuries. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2012; 2012:898430. [PMID: 22919433 PMCID: PMC3418697 DOI: 10.1155/2012/898430] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Accepted: 06/14/2012] [Indexed: 12/27/2022]
Abstract
Automated hemorrhage detection and segmentation in traumatic pelvic injuries is vital for fast and accurate treatment decision making. Hemorrhage is the main cause of deaths in patients within first 24 hours after the injury. It is very time consuming for physicians to analyze all Computed Tomography (CT) images manually. As time is crucial in emergence medicine, analyzing medical images manually delays the decision-making process. Automated hemorrhage detection and segmentation can significantly help physicians to analyze these images and make fast and accurate decisions. Hemorrhage segmentation is a crucial step in the accurate diagnosis and treatment decision-making process. This paper presents a novel rule-based hemorrhage segmentation technique that utilizes pelvic anatomical information to segment hemorrhage accurately. An evaluation measure is used to quantify the accuracy of hemorrhage segmentation. The results show that the proposed method is able to segment hemorrhage very well, and the results are promising.
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Vignati A, Giannini V, De Luca M, Morra L, Persano D, Carbonaro LA, Bertotto I, Martincich L, Regge D, Bert A, Sardanelli F. Performance of a fully automatic lesion detection system for breast DCE-MRI. J Magn Reson Imaging 2011; 34:1341-51. [PMID: 21965159 DOI: 10.1002/jmri.22680] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2010] [Accepted: 05/23/2011] [Indexed: 11/08/2022] Open
Abstract
PURPOSE To describe and test a new fully automatic lesion detection system for breast DCE-MRI. MATERIALS AND METHODS Studies were collected from two institutions adopting different DCE-MRI sequences, one with and the other one without fat-saturation. The detection pipeline consists of (i) breast segmentation, to identify breast size and location; (ii) registration, to correct for patient movements; (iii) lesion detection, to extract contrast-enhanced regions using a new normalization technique based on the contrast-uptake of mammary vessels; (iv) false positive (FP) reduction, to exclude contrast-enhanced regions other than lesions. Detection rate (number of system-detected malignant and benign lesions over the total number of lesions) and sensitivity (system-detected malignant lesions over the total number of malignant lesions) were assessed. The number of FPs was also assessed. RESULTS Forty-eight studies with 12 benign and 53 malignant lesions were evaluated. Median lesion diameter was 6 mm (range, 5-15 mm) for benign and 26 mm (range, 5-75 mm) for malignant lesions. Detection rate was 58/65 (89%; 95% confidence interval [CI] 79%-95%) and sensitivity was 52/53 (98%; 95% CI 90%-99%). Mammary median FPs per breast was 4 (1st-3rd quartiles 3-7.25). CONCLUSION The system showed promising results on MR datasets obtained from different scanners producing fat-sat or non-fat-sat images with variable temporal and spatial resolution and could potentially be used for early diagnosis and staging of breast cancer to reduce reading time and to improve lesion detection. Further evaluation is needed before it may be used in clinical practice.
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Affiliation(s)
- Anna Vignati
- Department of Radiology, IRCC - Institute for Cancer Research and Treatment, Candiolo, Italy.
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Small lesions evaluation based on unsupervised cluster analysis of signal-intensity time courses in dynamic breast MRI. Int J Biomed Imaging 2010; 2009:326924. [PMID: 20379361 PMCID: PMC2850138 DOI: 10.1155/2009/326924] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2009] [Accepted: 12/21/2009] [Indexed: 11/19/2022] Open
Abstract
An application of an unsupervised neural network-based computer-aided diagnosis (CAD) system is reported for the detection
and characterization of small indeterminate breast lesions, average size 1.1 mm, in dynamic contrast-enhanced MRI. This system
enables the extraction of spatial and temporal features of dynamic MRI data and additionally provides a segmentation with regard
to identification and regional subclassification of pathological breast tissue lesions. Lesions with an initial contrast enhancement
≥50% were selected with semiautomatic segmentation. This conventional segmentation analysis is based on the mean initial signal
increase and postinitial course of all voxels included in the lesion. In this paper, we compare the conventional segmentation analysis
with unsupervised classification for the evaluation of signal intensity time courses for the differential diagnosis of enhancing
lesions in breast MRI. The results suggest that the computerized analysis system based on unsupervised clustering has the potential to
increase the diagnostic accuracy of MRI mammography for small lesions and can be used as a basis for computer-aided diagnosis
of breast cancer with MR mammography.
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Giannini V, Vignati A, Morra L, Persano D, Brizzi D, Carbonaro L, Bert A, Sardanelli F, Regge D. A fully automatic algorithm for segmentation of the breasts in DCE-MR images. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010; 2010:3146-3149. [PMID: 21096592 DOI: 10.1109/iembs.2010.5627191] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Automatic segmentation of the breast and axillary region is an important preprocessing step for automatic lesion detection in breast MR and dynamic contrast-enhanced-MR studies. In this paper, we present a fully automatic procedure based on the detection of the upper border of the pectoral muscle. Compared with previous methods based on thresholding, this method is more robust to noise and field inhomogeneities. The method was quantitatively evaluated on 31 cases acquired from two centers by comparing the results with a manual segmentation. Results indicate good overall agreement within the reference segmentation (overlap=0.79 ± 0.09, recall=0.95 ± 0.02, precision=0.82 ± 0.1).
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Gorgel P, Sertbas A, Ucan ON. A Wavelet-Based Mammographic Image Denoising and Enhancement with Homomorphic Filtering. J Med Syst 2009; 34:993-1002. [DOI: 10.1007/s10916-009-9316-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Accepted: 05/08/2009] [Indexed: 10/20/2022]
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Nie K, Chen JH, Chan S, Chau MKI, Yu HJ, Bahri S, Tseng T, Nalcioglu O, Su MY. Development of a quantitative method for analysis of breast density based on three-dimensional breast MRI. Med Phys 2009; 35:5253-62. [PMID: 19175084 DOI: 10.1118/1.3002306] [Citation(s) in RCA: 145] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Breast density has been established as an independent risk factor associated with the development of breast cancer. It is known that an increase of mammographic density is associated with an increased cancer risk. Since a mammogram is a projection image, different body position, level of compression, and the x-ray intensity may lead to a large variability in the density measurement. Breast MRI provides strong soft tissue contrast between fibroglandular and fatty tissues, and three-dimensional coverage of the entire breast, thus making it suitable for density analysis. To develop the MRI-based method, the first task is to achieve consistency in segmentation of the breast region from the body. The method included an initial segmentation based on body landmarks of each individual woman, followed by fuzzy C-mean (FCM) classification to exclude air and lung tissue, B-spline curve fitting to exclude chest wall muscle, and dynamic searching to exclude skin. Then, within the segmented breast, the adaptive FCM was used for simultaneous bias field correction and fibroglandular tissue segmentation. The intraoperator and interoperator reproducibility was evaluated using 11 selected cases covering a broad spectrum of breast densities with different parenchymal patterns. The average standard deviation for breast volume and percent density measurements was in the range of 3%-4% among three trials of one operator or among three different operators. The body position dependence was also investigated by performing scans of two healthy volunteers, each at five different positions, and found the variation in the range of 3%-4%. These initial results suggest that the technique based on three-dimensional MRI can achieve reasonable consistency to be applied in longitudinal follow-up studies to detect small changes. It may also provide a reliable method for evaluating the change of breast density for risk management of women, or for evaluating the benefits/risks when considering hormonal replacement therapy or chemoprevention.
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Affiliation(s)
- Ke Nie
- Tu & Yuen Center for Functional Onco-Imaging, University of California, Irvine, California 92697, USA
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Colonic Polyp Detection in CT Colonography with Fuzzy Rule Based 3D Template Matching. J Med Syst 2008; 33:9-18. [DOI: 10.1007/s10916-008-9159-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Ertaş G, Gülçür HÖ, Tunacı M. An interactive dynamic analysis and decision support software for MR mammography. Comput Med Imaging Graph 2008; 32:284-93. [DOI: 10.1016/j.compmedimag.2008.01.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2007] [Revised: 01/20/2008] [Accepted: 01/25/2008] [Indexed: 11/30/2022]
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Ertas G, Gulcur HO, Tunaci M. Normalized maximum intensity time ratio maps and morphological descriptors for assessment of malignancy in MR mammography. Med Phys 2008; 35:1893-900. [DOI: 10.1118/1.2891365] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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