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Tian H, Zhang K, Zhang J, Shi J, Qiu H, Hou N, Han F, Kan C, Sun X. Revolutionizing public health through digital health technology. PSYCHOL HEALTH MED 2025:1-16. [PMID: 39864819 DOI: 10.1080/13548506.2025.2458254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 01/20/2025] [Indexed: 01/28/2025]
Abstract
The aging population and increasing chronic diseases strain public health systems. Advancements in digital health promise to tackle these challenges and enhance public health outcomes. Digital health integrates digital health technology (DHT) across healthcare, including smart consumer devices. This article examines the application of DHT in public health and its significant impact on revolutionizing the field. Historically, DHT has not only enhanced the efficiency of disease prevention, diagnosis, and treatment but also facilitated the equitable distribution of global health resources. Looking ahead, DHT holds vast potential in areas such as personalized medicine, telemedicine, and intelligent health management. However, it also encounters challenges such as ethics, privacy, and data security. To further advance DHT, concerted efforts are essential, including policy support, investment in research and development, involvement of medical institutions, and improvement of public digital health literacy.
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Affiliation(s)
- Hongzhan Tian
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Kexin Zhang
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Jingwen Zhang
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Junfeng Shi
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Hongyan Qiu
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Ningning Hou
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Fang Han
- Department of Pathology, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Chengxia Kan
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
| | - Xiaodong Sun
- Department of Endocrinology and Metabolism, Clinical Research Center, Affiliated Hospital of Shandong Second Medical University, Weifang, China
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Dar MF, Ganivada A. Adaptive ensemble loss and multi-scale attention in breast ultrasound segmentation with UMA-Net. Med Biol Eng Comput 2025:10.1007/s11517-025-03301-5. [PMID: 39847155 DOI: 10.1007/s11517-025-03301-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Accepted: 01/15/2025] [Indexed: 01/24/2025]
Abstract
The generalization of deep learning (DL) models is critical for accurate lesion segmentation in breast ultrasound (BUS) images. Traditional DL models often struggle to generalize well due to the high frequency and scale variations inherent in BUS images. Moreover, conventional loss functions used in these models frequently result in imbalanced optimization, either prioritizing region overlap or boundary accuracy, which leads to suboptimal segmentation performance. To address these issues, we propose UMA-Net, an enhanced UNet architecture specifically designed for BUS image segmentation. UMA-Net integrates residual connections, attention mechanisms, and a bottleneck with atrous convolutions to effectively capture multi-scale contextual information without compromising spatial resolution. Additionally, we introduce an adaptive ensemble loss function that dynamically balances the contributions of different loss components during training, ensuring optimization across key segmentation metrics. This novel approach mitigates the imbalances found in conventional loss functions. We validate UMA-Net on five diverse BUS datasets-BUET, BUSI, Mendeley, OMI, and UDIAT-demonstrating superior performance. Our findings highlight the importance of addressing frequency and scale variations, confirming UMA-Net as a robust and generalizable solution for BUS image segmentation.
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Affiliation(s)
- Mohsin Furkh Dar
- Artificial Intelligence Lab, School of Computer and Information Sciences, University of Hyderabad, Hyderabad, 500046, India.
| | - Avatharam Ganivada
- Artificial Intelligence Lab, School of Computer and Information Sciences, University of Hyderabad, Hyderabad, 500046, India
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3
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Wankhade D, Dhawale C, Meshram M. Advanced deep learning algorithms in oral cancer detection: Techniques and applications. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART C, TOXICOLOGY AND CARCINOGENESIS 2025:1-26. [PMID: 39819195 DOI: 10.1080/26896583.2024.2445957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2025]
Abstract
As the 16th most common cancer globally, oral cancer yearly accounts for some 355,000 new cases. This study underlines that an early diagnosis can improve the prognosis and cut down on mortality. It discloses a multifaceted approach to the detection of oral cancer, including clinical examination, biopsies, imaging techniques, and the incorporation of artificial intelligence and deep learning methods. This study is distinctive in that it provides a thorough analysis of the most recent AI-based methods for detecting oral cancer, including deep learning models and machine learning algorithms that use convolutional neural networks. By improving the precision and effectiveness of cancer cell detection, these models eventually make early diagnosis and therapy possible. This study also discusses the importance of techniques in image pre-processing and segmentation in improving image quality and feature extraction, an essential component of accurate diagnosis. These techniques have shown promising results, with classification accuracies reaching up to 97.66% in some models. Integrating the conventional methods with the cutting-edge AI technologies, this study seeks to advance early diagnosis of oral cancer, thus enhancing patient outcomes and cutting down on the burden this disease is imposing on healthcare systems.
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Affiliation(s)
- Dipali Wankhade
- Research Scholar, Datta Meghe Institute of Higher Education and Research Wardha, Nagpur, India
| | - Chitra Dhawale
- Faculty of Science and Technology, Datta Meghe Institute of Higher Education and Research, (Declared as Deemed-to-be-University), Wardha, India
| | - Mrunal Meshram
- Department of Oral Medicine & Radiology, Sharad Pawar Dental Collage, Sawangi, Wardha, India
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4
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Koyun M, Taskent I. Evaluation of Advanced Artificial Intelligence Algorithms' Diagnostic Efficacy in Acute Ischemic Stroke: A Comparative Analysis of ChatGPT-4o and Claude 3.5 Sonnet Models. J Clin Med 2025; 14:571. [PMID: 39860577 PMCID: PMC11765597 DOI: 10.3390/jcm14020571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 01/15/2025] [Accepted: 01/16/2025] [Indexed: 01/27/2025] Open
Abstract
Background/Objectives: Acute ischemic stroke (AIS) is a leading cause of mortality and disability worldwide, with early and accurate diagnosis being critical for timely intervention and improved patient outcomes. This retrospective study aimed to assess the diagnostic performance of two advanced artificial intelligence (AI) models, Chat Generative Pre-trained Transformer (ChatGPT-4o) and Claude 3.5 Sonnet, in identifying AIS from diffusion-weighted imaging (DWI). Methods: The DWI images of a total of 110 cases (AIS group: n = 55, healthy controls: n = 55) were provided to the AI models via standardized prompts. The models' responses were compared to radiologists' gold-standard evaluations, and performance metrics such as sensitivity, specificity, and diagnostic accuracy were calculated. Results: Both models exhibited a high sensitivity for AIS detection (ChatGPT-4o: 100%, Claude 3.5 Sonnet: 94.5%). However, ChatGPT-4o demonstrated a significantly lower specificity (3.6%) compared to Claude 3.5 Sonnet (74.5%). The agreement with radiologists was poor for ChatGPT-4o (κ = 0.036; %95 CI: -0.013, 0.085) but good for Claude 3.5 Sonnet (κ = 0.691; %95 CI: 0.558, 0.824). In terms of the AIS hemispheric localization accuracy, Claude 3.5 Sonnet (67.2%) outperformed ChatGPT-4o (32.7%). Similarly, for specific AIS localization, Claude 3.5 Sonnet (30.9%) showed greater accuracy than ChatGPT-4o (7.3%), with these differences being statistically significant (p < 0.05). Conclusions: This study highlights the superior diagnostic performance of Claude 3.5 Sonnet compared to ChatGPT-4o in identifying AIS from DWI. Despite its advantages, both models demonstrated notable limitations in accuracy, emphasizing the need for further development before achieving full clinical applicability. These findings underline the potential of AI tools in radiological diagnostics while acknowledging their current limitations.
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Affiliation(s)
- Mustafa Koyun
- Department of Radiology, Kastamonu Training and Research Hospital, Kastamonu 37150, Turkey
| | - Ismail Taskent
- Department of Radiology, Kastamonu University, Kastamonu 37150, Turkey;
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5
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Li J, Wang K, Jiang X. Robust Multi-Subtype Identification of Breast Cancer Pathological Images Based on a Dual-Branch Frequency Domain Fusion Network. SENSORS (BASEL, SWITZERLAND) 2025; 25:240. [PMID: 39797031 PMCID: PMC11723249 DOI: 10.3390/s25010240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 12/27/2024] [Accepted: 01/01/2025] [Indexed: 01/13/2025]
Abstract
Breast cancer (BC) is one of the most lethal cancers worldwide, and its early diagnosis is critical for improving patient survival rates. However, the extraction of key information from complex medical images and the attainment of high-precision classification present a significant challenge. In the field of signal processing, texture-rich images typically exhibit periodic patterns and structures, which are manifested as significant energy concentrations at specific frequencies in the frequency domain. Given the above considerations, this study is designed to explore the application of frequency domain analysis in BC histopathological classification. This study proposes the dual-branch adaptive frequency domain fusion network (AFFNet), designed to enable each branch to specialize in distinct frequency domain features of pathological images. Additionally, two different frequency domain approaches, namely Multi-Spectral Channel Attention (MSCA) and Fourier Filtering Enhancement Operator (FFEO), are employed to enhance the texture features of pathological images and minimize information loss. Moreover, the contributions of the two branches at different stages are dynamically adjusted by a frequency-domain-adaptive fusion strategy to accommodate the complexity and multi-scale features of pathological images. The experimental results, based on two public BC histopathological image datasets, corroborate the idea that AFFNet outperforms 10 state-of-the-art image classification methods, underscoring its effectiveness and superiority in this domain.
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Affiliation(s)
- Jianjun Li
- School of Mechanical and Electrical Engineering, China Jiliang University, Hangzhou 310018, China
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Bala PM, Palani U. Innovative breast cancer detection using a segmentation-guided ensemble classification framework. Biomed Eng Lett 2025; 15:179-191. [PMID: 39781047 PMCID: PMC11704121 DOI: 10.1007/s13534-024-00435-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 09/25/2024] [Accepted: 09/28/2024] [Indexed: 01/11/2025] Open
Abstract
Breast cancer (BC) remains a significant global health issue, necessitating innovative methodologies to improve early detection and diagnosis. Despite the existence of intelligent deep learning models, their efficacy is often limited due to the oversight of small-sized masses, leading to false positive and false negative outcomes. This research introduces a novel segmentation-guided classification model developed to increase BC detection accuracy. The designed model unfolds in two critical phases, each contributing to a comprehensive BC diagnostic pipeline. In Phase I, the Attention U-Net model is utilized for BC segmentation. The encoder extracts hierarchical features, while the decoder, supported by attention mechanisms, refines the segmentation, focusing on suspicious regions. In Phase II, a novel ensemble approach is introduced for BC classification, involving various feature extraction methods, base classifiers, and a meta-classifier. An ensemble of model classifiers-including support vector machine, decision trees, k-nearest neighbor and artificial neural network- captures diverse patterns within these features. The Random Forest meta-classifier amalgamates their outputs, leveraging their collective strengths. The proposed integrated model accurately identifies different breast tumor classes, including malignant, benign, and normal. The precise region-of-interest analysis from segmentation phase significantly boosted classification performance of ensemble meta-classifier. The model accomplished an overall accuracy rate of 99.57% with high segmentation performance of 95% f1-score, illustrating its high discriminative power in detecting malignant, benign, and normal cases within the ultrasound image dataset. This research contributes to reducing breast tumor morbidity and mortality by facilitating early detection and timely intervention, ultimately supporting better patient outcomes. Supplementary Information The online version contains supplementary material available at 10.1007/s13534-024-00435-7.
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Affiliation(s)
- P. Manju Bala
- Computer Science and Engineering, IFET College of Engineering, Villupuram, Tamilnadu India
| | - U. Palani
- Electronics and Communication Engineering, IFET College of Engineering, Villupuram, Tamilnadu India
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7
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Kumar Saha D, Hossain T, Safran M, Alfarhood S, Mridha MF, Che D. Segmentation for mammography classification utilizing deep convolutional neural network. BMC Med Imaging 2024; 24:334. [PMID: 39696014 DOI: 10.1186/s12880-024-01510-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Accepted: 11/21/2024] [Indexed: 12/20/2024] Open
Abstract
BACKGROUND Mammography for the diagnosis of early breast cancer (BC) relies heavily on the identification of breast masses. However, in the early stages, it might be challenging to ascertain whether a breast mass is benign or malignant. Consequently, many deep learning (DL)-based computer-aided diagnosis (CAD) approaches for BC classification have been developed. METHODS Recently, the transformer model has emerged as a method for overcoming the constraints of convolutional neural networks (CNN). Thus, our primary goal was to determine how well an improved transformer model could distinguish between benign and malignant breast tissues. In this instance, we drew on the Mendeley data repository's INbreast dataset, which includes benign and malignant breast types. Additionally, the segmentation anything model (SAM) method was used to generate the optimized cutoff for region of interest (ROI) extraction from all mammograms. We implemented a successful architecture modification at the bottom layer of a pyramid transformer (PTr) to identify BC from mammography images. RESULTS The proposed PTr model using a transfer learning (TL) approach with a segmentation technique achieved the best accuracy of 99.96% for binary classifications with an area under the curve (AUC) score of 99.98%, respectively. We also compared the performance of the proposed model with other transformer model vision transformers (ViT) and DL models, MobileNetV3 and EfficientNetB7, respectively. CONCLUSIONS In this study, a modified transformer model is proposed for BC prediction and mammography image classification using segmentation approaches. Data segmentation techniques accurately identify the regions affected by BC. Finally, the proposed transformer model accurately classified benign and malignant breast tissues, which is vital for radiologists to guide future treatment.
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Affiliation(s)
- Dip Kumar Saha
- Department of Computer Science and Engineering, Stamford University Bangladesh, Siddeswari, Dhaka, Bangladesh
| | - Tuhin Hossain
- Department of Computer Science and Engineering, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Mejdl Safran
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh, 11543, Saudi Arabia.
| | - Sultan Alfarhood
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh, 11543, Saudi Arabia
| | - M F Mridha
- Department of Computer Science, American International University-Bangladesh, Kuratoli, Dhaka, Bangladesh.
| | - Dunren Che
- Department of Electrical Engineering and Computer Science, Texas A&M University-Kingsville, Kingsville, 78363, Texas, USA
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Liu J, Zhou S, Zang M, Liu C, Liu T, Wang Q. Multiple instance learning method based on convolutional neural network and self-attention for early cancer detection. Comput Methods Biomech Biomed Engin 2024:1-16. [PMID: 39644499 DOI: 10.1080/10255842.2024.2436909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Revised: 10/07/2024] [Accepted: 11/27/2024] [Indexed: 12/09/2024]
Abstract
Early cancer detection using T-cell receptor sequencing (TCR-seq) and multiple instances learning methods has shown significant effectiveness. We introduce a multiple instance learning method based on convolutional neural networks and self-attention (MICA). First, MICA preprocesses TCR-seq using word vectors and then extracts features using convolutional neural networks. Second, MICA uses an enhanced self-attention mechanism to extract relational features of instances. Finally, MICA can extract the crucial TCR-seq. After cross-validation, MICA achieves an area under the curve (AUC) of 0.911 and 0.946 on the lung and thyroid cancer datasets, which are 7.1% and 2.1% higher than other methods, respectively.
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Affiliation(s)
- Junjiang Liu
- School of Information and Electrical Engineering, Ludong University, Shandong, China
| | - Shusen Zhou
- School of Information and Electrical Engineering, Ludong University, Shandong, China
| | - Mujun Zang
- School of Information and Electrical Engineering, Ludong University, Shandong, China
| | - Chanjuan Liu
- School of Information and Electrical Engineering, Ludong University, Shandong, China
| | - Tong Liu
- School of Information and Electrical Engineering, Ludong University, Shandong, China
| | - Qingjun Wang
- School of Information and Electrical Engineering, Ludong University, Shandong, China
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Shi C, Zhu D, Zhou C, Cheng S, Zou C. Gpmb-yolo: a lightweight model for efficient blood cell detection in medical imaging. Health Inf Sci Syst 2024; 12:24. [PMID: 39668840 PMCID: PMC11632753 DOI: 10.1007/s13755-024-00285-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 02/24/2024] [Indexed: 12/14/2024] Open
Abstract
In the field of biomedical science, blood cell detection in microscopic images is crucial for aiding physicians in diagnosing blood-related diseases and plays a pivotal role in advancing medicine toward more precise and efficient treatment directions. Addressing the time-consuming and error-prone issues of traditional manual detection methods, as well as the challenge existing blood cell detection technologies face in meeting both high accuracy and real-time requirements, this study proposes a lightweight blood cell detection model based on YOLOv8n, named GPMB-YOLO. This model utilizes advanced lightweight strategies and PGhostC2f design, effectively reducing model complexity and enhancing detection speed. The integration of the simple parameter-free attention mechanism (SimAM) significantly enhances the model's feature extraction ability. Furthermore, we have designed a multidimensional attention-enhanced bidirectional feature pyramid network structure, MCA-BiFPN, optimizing the effect of multi-scale feature fusion. And use genetic algorithms for hyperparameter optimization, further improving detection accuracy. Experimental results validate the effectiveness of the GPMB-YOLO model, which realized a 3.2% increase in mean Average Precision (mAP) compared to the baseline YOLOv8n model and a marked reduction in model complexity. Furthermore, we have developed a blood cell detection system and deployed the model for application. This study serves as a valuable reference for the efficient detection of blood cells in medical images.
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Affiliation(s)
- Chenyang Shi
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua, 321004 China
| | - Donglin Zhu
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua, 321004 China
| | - Changjun Zhou
- School of Computer Science and Technology, Zhejiang Normal University, Jinhua, 321004 China
| | - Shi Cheng
- School of Computer Science, Shaanxi Normal University, Xi’an, 710119 China
| | - Chengye Zou
- College of Information Science and Engineering, Yanshan University, Qinhuangdao, 066004 China
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10
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Hatamikia S, George G, Schwarzhans F, Mahbod A, Woitek R. Breast MRI radiomics and machine learning-based predictions of response to neoadjuvant chemotherapy - How are they affected by variations in tumor delineation? Comput Struct Biotechnol J 2024; 23:52-63. [PMID: 38125296 PMCID: PMC10730996 DOI: 10.1016/j.csbj.2023.11.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 11/08/2023] [Accepted: 11/08/2023] [Indexed: 12/23/2023] Open
Abstract
Manual delineation of volumes of interest (VOIs) by experts is considered the gold-standard method in radiomics analysis. However, it suffers from inter- and intra-operator variability. A quantitative assessment of the impact of variations in these delineations on the performance of the radiomics predictors is required to develop robust radiomics based prediction models. In this study, we developed radiomics models for the prediction of pathological complete response to neoadjuvant chemotherapy in patients with two different breast cancer subtypes based on contrast-enhanced magnetic resonance imaging acquired prior to treatment (baseline MRI scans). Different mathematical operations such as erosion, smoothing, dilation, randomization, and ellipse fitting were applied to the original VOIs delineated by experts to simulate variations of segmentation masks. The effects of such VOI modifications on various steps of the radiomics workflow, including feature extraction, feature selection, and prediction performance, were evaluated. Using manual tumor VOIs and radiomics features extracted from baseline MRI scans, an AUC of up to 0.96 and 0.89 was achieved for human epidermal growth receptor 2 positive and triple-negative breast cancer, respectively. For smoothing and erosion, VOIs yielded the highest number of robust features and the best prediction performance, while ellipse fitting and dilation lead to the lowest robustness and prediction performance for both breast cancer subtypes. At most 28% of the selected features were similar to manual VOIs when different VOI delineation data were used. Differences in VOI delineation affect different steps of radiomics analysis, and their quantification is therefore important for development of standardized radiomics research.
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Affiliation(s)
- Sepideh Hatamikia
- Danube Private University, Krems, Rathausplatz 1, Krems-Stein, AT-3500, Austria
- Austrian Center for Medical Innovation and Technology (ACMIT), Viktor Kaplan-Straße 2/1, Wiener Neustadt 2700, Austria
| | - Geevarghese George
- Danube Private University, Krems, Rathausplatz 1, Krems-Stein, AT-3500, Austria
| | - Florian Schwarzhans
- Danube Private University, Krems, Rathausplatz 1, Krems-Stein, AT-3500, Austria
| | - Amirreza Mahbod
- Danube Private University, Krems, Rathausplatz 1, Krems-Stein, AT-3500, Austria
| | - Ramona Woitek
- Danube Private University, Krems, Rathausplatz 1, Krems-Stein, AT-3500, Austria
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Gui H, Jiao H, Li L, Jiang X, Su T, Pang Z. Breast Tumor Detection and Diagnosis Using an Improved Faster R-CNN in DCE-MRI. Bioengineering (Basel) 2024; 11:1217. [PMID: 39768035 PMCID: PMC11673413 DOI: 10.3390/bioengineering11121217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 11/27/2024] [Accepted: 11/28/2024] [Indexed: 01/11/2025] Open
Abstract
AI-based breast cancer detection can improve the sensitivity and specificity of detection, especially for small lesions, which has clinical value in realizing early detection and treatment so as to reduce mortality. The two-stage detection network performs well; however, it adopts an imprecise ROI during classification, which can easily include surrounding tumor tissues. Additionally, fuzzy noise is a significant contributor to false positives. We adopted Faster RCNN as the architecture, introduced ROI aligning to minimize quantization errors and feature pyramid network (FPN) to extract different resolution features, added a bounding box quadratic regression feature map extraction network and three convolutional layers to reduce interference from tumor surrounding information, and extracted more accurate and deeper feature maps. Our approach outperformed Faster R-CNN, Mask R-CNN, and YOLOv9 in breast cancer detection across 485 internal cases. We achieved superior performance in mAP, sensitivity, and false positive rate ((0.752, 0.950, 0.133) vs. (0.711, 0.950, 0.200) vs. (0.718, 0.880, 0.120) vs. (0.658, 0.680, 405)), which represents a 38.5% reduction in false positives compared to manual detection. Additionally, in a public dataset of 220 cases, our model also demonstrated the best performance. It showed improved sensitivity and specificity, effectively assisting doctors in diagnosing cancer.
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Affiliation(s)
- Haitian Gui
- School of Biomedical Engineering, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China;
| | - Han Jiao
- School of Electronics and Information Technology, Sun Yat-sen University, Guangzhou 510006, China;
| | - Li Li
- State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Department of Medical Imaging, Sun Yat-sen University Cancer Center (SYSUCC), Guangzhou 510060, China; (L.L.); (X.J.)
| | - Xinhua Jiang
- State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Department of Medical Imaging, Sun Yat-sen University Cancer Center (SYSUCC), Guangzhou 510060, China; (L.L.); (X.J.)
| | - Tao Su
- School of Electronics and Information Technology, Sun Yat-sen University, Guangzhou 510006, China;
| | - Zhiyong Pang
- School of Electronics and Information Technology, Sun Yat-sen University, Guangzhou 510006, China;
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12
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Abdelrahim EM, Hashim H, Atlam ES, Osman RA, Gad I. TMS: Ensemble Deep Learning Model for Accurate Classification of Monkeypox Lesions Based on Transformer Models with SVM. Diagnostics (Basel) 2024; 14:2638. [PMID: 39682546 DOI: 10.3390/diagnostics14232638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Revised: 11/20/2024] [Accepted: 11/21/2024] [Indexed: 12/18/2024] Open
Abstract
BACKGROUND/OBJECTIVES The emergence of monkeypox outside its endemic region in Africa has raised significant concerns within the public health community due to its rapid global dissemination. Early clinical differentiation of monkeypox from similar diseases, such as chickenpox and measles, presents a challenge. The Monkeypox Skin Lesion Dataset (MSLD) used in this study comprises monkeypox skin lesions, which were collected primarily from publicly accessible sources. The dataset contains 770 original images captured from 162 unique patients. The MSLD includes four distinct class labels: monkeypox, measles, chickenpox, and normal. METHODS This paper presents an ensemble model for classifying the monkeypox dataset, which includes transformer models and support vector machine (SVM). The model development process begins with an evaluation of seven convolutional neural network (CNN) architectures. The proposed model is developed by selecting the top four models based on evaluation metrics for performance. The top four CNN architectures, namely EfficientNetB0, ResNet50, MobileNet, and Xception, are used for feature extraction. The high-dimensional feature vectors extracted from each network are then concatenated and optimized before being inputted into the SVM classifier. RESULTS The proposed ensemble model, in conjunction with the SVM classifier, achieves an accuracy of 95.45b%. Furthermore, the model demonstrates high precision (95.51%), recall (95.45%), and F1 score (95.46%), indicating its effectiveness in identifying monkeypox lesions. CONCLUSIONS The results of the study show that the proposed hybrid framework achieves robust diagnostic performance in monkeypox detection, offering potential utility for enhanced disease monitoring and outbreak management. The model's high diagnostic accuracy and computational efficiency indicate that it can be used as an additional tool for clinical decision support.
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Affiliation(s)
- Elsaid Md Abdelrahim
- Computer Science Department, Science College, Northern Border University (NBU), Arar 73213, Saudi Arabia
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
| | - Hasan Hashim
- Department of Computer Science, College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
| | - El-Sayed Atlam
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
- Department of Computer Science, College of Computer Science and Engineering, Taibah University, Yanbu 46421, Saudi Arabia
| | - Radwa Ahmed Osman
- Basic and Applied Science Institute, College of Engineering and Technology, Arab Academy for Science and Technology (AAST), Alexandria 1029, Egypt
| | - Ibrahim Gad
- Computer Science Department, Faculty of Science, Tanta University, Tanta 31527, Egypt
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13
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Li L, Li L, Wang Y, Wu B, Guan Y, Chen Y, Zhao J. Integration of Machine Learning and Experimental Validation to Identify Anoikis-Related Prognostic Signature for Predicting the Breast Cancer Tumor Microenvironment and Treatment Response. Genes (Basel) 2024; 15:1458. [PMID: 39596658 PMCID: PMC11594124 DOI: 10.3390/genes15111458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 11/07/2024] [Accepted: 11/11/2024] [Indexed: 11/29/2024] Open
Abstract
Background/Objectives: Anoikis-related genes (ANRGs) are crucial in the invasion and metastasis of breast cancer (BC). The underlying role of ANRGs in the prognosis of breast cancer patients warrants further study. Methods: The anoikis-related prognostic signature (ANRS) was generated using a variety of machine learning methods, and the correlation between the ANRS and the tumor microenvironment (TME), drug sensitivity, and immunotherapy was investigated. Moreover, single-cell analysis and spatial transcriptome studies were conducted to investigate the expression of prognostic ANRGs across various cell types. Finally, the expression of ANRGs was verified by RT-PCR and Western blot analysis (WB), and the expression level of PLK1 in the blood was measured by the enzyme-linked immunosorbent assay (ELISA). Results: The ANRS, consisting of five ANRGs, was established. BC patients within the high-ANRS group exhibited poorer prognoses, characterized by elevated levels of immune suppression and stromal scores. The low-ANRS group had a better response to chemotherapy and immunotherapy. Single-cell analysis and spatial transcriptomics revealed variations in ANRGs across cells. The results of RT-PCR and WB were consistent with the differential expression analyses from databases. NU.1025 and imatinib were identified as potential inhibitors for SPIB and PLK1, respectively. Additionally, findings from ELISA demonstrated increased expression levels of PLK1 in the blood of BC patients. Conclusions: The ANRS can act as an independent prognostic indicator for BC patients, providing significant guidance for the implementation of chemotherapy and immunotherapy in these patients. Additionally, PLK1 has emerged as a potential blood-based diagnostic marker for breast cancer patients.
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Affiliation(s)
- Longpeng Li
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
| | - Longhui Li
- School of Kinesiology and Health, Capital University of Physical Education and Sports, Beijing 100191, China
| | - Yaxin Wang
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
| | - Baoai Wu
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
| | - Yue Guan
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
| | - Yinghua Chen
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
| | - Jinfeng Zhao
- Institute of Physical Education and Sport, Shanxi University, Taiyuan 030006, China; (L.L.)
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14
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Islam N, Hasib KM, Mridha MF, Alfarhood S, Safran M, Bhuyan MK. Fusing global context with multiscale context for enhanced breast cancer classification. Sci Rep 2024; 14:27358. [PMID: 39521803 PMCID: PMC11550815 DOI: 10.1038/s41598-024-78363-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 10/30/2024] [Indexed: 11/16/2024] Open
Abstract
Breast cancer is the second most common type of cancer among women. Prompt detection of breast cancer can impede its advancement to more advanced phases, thereby elevating the probability of favorable treatment consequences. Histopathological images are commonly used for breast cancer classification due to their detailed cellular information. Existing diagnostic approaches rely on Convolutional Neural Networks (CNNs) which are limited to local context resulting in a lower classification accuracy. Therefore, we present a fusion model composed of a Vision Transformer (ViT) and custom Atrous Spatial Pyramid Pooling (ASPP) network with an attention mechanism for effectively classifying breast cancer from histopathological images. ViT enables the model to attain global features, while the ASPP network accommodates multiscale features. Fusing the features derived from the models resulted in a robust breast cancer classifier. With the help of five-stage image preprocessing technique, the proposed model achieved 100% accuracy in classifying breast cancer on the BreakHis dataset at 100X and 400X magnification factors. On 40X and 200X magnifications, the model achieved 99.25% and 98.26% classification accuracy respectively. With a commendable classification efficacy on histopathological images, the model can be considered a dependable option for proficient breast cancer classification.
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Affiliation(s)
- Niful Islam
- Department of Computer Science and Engineering, United International University, Dhaka, 1212, Bangladesh
| | - Khan Md Hasib
- Department of Computer Science and Engineering, Bangladesh University of Business and Technology, Mirpur, Dhaka, 1216, Bangladesh
| | - M F Mridha
- Department of Computer Science, American International University - Bangladesh, Dhaka, 1229, Bangladesh.
| | - Sultan Alfarhood
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, P.O.Box 51178, Riyadh, 11543, Saudi Arabia
| | - Mejdl Safran
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, P.O.Box 51178, Riyadh, 11543, Saudi Arabia.
| | - M K Bhuyan
- Department of Electronics and Electrical Engineering, Indian Institute of Technology Guwahati, Assam, 781039, India
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15
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Liu Z, Zhang H, Zhang M, Qu C, Li L, Sun Y, Ma X. Compare three deep learning-based artificial intelligence models for classification of calcified lumbar disc herniation: a multicenter diagnostic study. Front Surg 2024; 11:1458569. [PMID: 39569028 PMCID: PMC11576459 DOI: 10.3389/fsurg.2024.1458569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 10/21/2024] [Indexed: 11/22/2024] Open
Abstract
Objective To develop and validate an artificial intelligence diagnostic model for identifying calcified lumbar disc herniation based on lateral lumbar magnetic resonance imaging(MRI). Methods During the period from January 2019 to March 2024, patients meeting the inclusion criteria were collected. All patients had undergone both lumbar spine MRI and computed tomography(CT) examinations, with regions of interest (ROI) clearly marked on the lumbar sagittal MRI images. The participants were then divided into separate sets for training, testing, and external validation. Ultimately, we developed a deep learning model using the ResNet-34 algorithm model and evaluated its diagnostic efficacy. Results A total of 1,224 eligible patients were included in this study, consisting of 610 males and 614 females, with an average age of 53.34 ± 10.61 years. Notably, the test datasets displayed an impressive classification accuracy rate of 91.67%, whereas the external validation datasets achieved a classification accuracy rate of 88.76%. Among the test datasets, the ResNet34 model outperformed other models, yielding the highest area under the curve (AUC) of 0.96 (95% CI: 0.93, 0.99). Additionally, the ResNet34 model also exhibited superior performance in the external validation datasets, exhibiting an AUC of 0.88 (95% CI: 0.80, 0.93). Conclusion In this study, we established a deep learning model with excellent performance in identifying calcified intervertebral discs, thereby offering a valuable and efficient diagnostic tool for clinical surgeons.
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Affiliation(s)
- Zhiming Liu
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Hao Zhang
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Min Zhang
- Department of Neonatology, The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China
| | - Changpeng Qu
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Lei Li
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Yihao Sun
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
| | - Xuexiao Ma
- Department of Spine Surgery, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China
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16
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Pal M, Panda G, Mohapatra RK, Rath A, Dash S, Shah MA, Mallik S. Ensemble approach of deep learning models for binary and multiclass classification of histopathological images for breast cancer. Pathol Res Pract 2024; 263:155644. [PMID: 39395299 DOI: 10.1016/j.prp.2024.155644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/11/2024] [Revised: 09/17/2024] [Accepted: 10/02/2024] [Indexed: 10/14/2024]
Abstract
Breast cancer (BC) is the most frequently occurring cancer disease observed in women after lung cancer. Out of different stages, invasive ductal BC causes maximum deaths in women. In this work, three deep learning (DL) models such as Vision Transformer (ViT), Convmixer, and Visual Geometry Group-19 (VGG-19) are implemented for the detection and classification of different breast cancer tumors with the help of Breast cancer histopathological (Break His) image database. The performance of each model is evaluated using an 80:20 training scheme and measured in terms of accuracy, precision, recall, loss, F1-score, and area under the curve (AUC). From the simulation result, ViT showed the best performance for binary classification of breast cancer tumors with accuracy, precision, recall, and F1-score of 99.89 %, 98.29 %, 98.29 %, and 98.29 %, respectively. Also, ViT showed the best performance in terms of accuracy (98.21 %), average Precision (89.84 %), recall (89.97 %), and F1-score (88.75) for eight class classifications. Moreover, we have also ensemble the ViT-Convmixer model and observed that the performance of the ensemble model is reduced as compared to the ViT model. We have also compared the performance of the proposed best model with other existing models reported by several research groups. The study will help find suitable models that will increase accuracy in early diagnoses of BC. We hope the study will also help to minimize human errors in the early diagnosis of this fatal disease and administer appropriate treatment. The proposed model may also be implemented for the detection of other diseases with improved accuracy.
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Affiliation(s)
- Madhumita Pal
- Department of Electrical Engineering, Government College of Engineering, Keonjhar, Odisha 758002, India
| | - Ganapati Panda
- Department of Electronics and Communication Engineering, C. V. Raman Global University, Bidyanagar, Mahura, Janla, Bhubaneswar, Odisha 752054, India
| | - Ranjan K Mohapatra
- Department of Chemistry, Government College of Engineering, Keonjhar, Odisha 758002, India
| | - Adyasha Rath
- Department of Computer Science Engineering, C. V. Raman Global University, Bidyanagar, Mahura, Janla, Bhubaneswar, Odisha 752054, India
| | - Sujata Dash
- Department of Information Technology, Nagaland University, Dimapur, Nagaland 797112, India
| | - Mohd Asif Shah
- Department of Economics, Kardan University, Parwane Du, Kabul 1001, Afghanistan; Division of Research and Development, Lovely Professional University, Phagwara, Punjab, 144001, India; Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura-140401, Punjab, India.
| | - Saurav Mallik
- Department of Environmental Health, Harvard T. H. Chan School of Public Health, Boston, USA; Department of Pharmacology & Toxicology, University of Arizona, Tucson, MA 85721, USA.
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17
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Vijaya P, Chander S, Fernandes R, Rodrigues AP, Raja M. Flamingo Search Sailfish Optimizer Based SqueezeNet for Detection of Breast Cancer Using MRI Images. Cancer Invest 2024; 42:745-768. [PMID: 39301618 DOI: 10.1080/07357907.2024.2403088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 09/08/2024] [Indexed: 09/22/2024]
Abstract
Breast cancer with increased risk in women is identified with Breast Magnetic Resonance Imaging (Breast MRI) and this helps in evaluating treatment therapies. Breast MRI is time time-consuming process that involves the assessment of current imaging. This research work depends on the detection of breast cancer at the earlier stages. Among various cancers, breast cancer in women occurs in larger accounts for almost 30% of estimated cancer cases. In this research, many steps are followed for breast cancer detection like pre-processing, segmentation, augmentation, extraction of features, and cancer detection. Here, the median filter is utilized for pre-processing, as well as segmentation is followed after pre-processing, which is done by Psi-Net. Moreover, the process of augmentation like shearing, translation, and cropping are followed after segmentation. Also, the segmented image tends to process feature extraction, where features like shape features, Completed Local Binary Pattern (CLBP), Pyramid Histogram of Oriented Gradients (PHOG), and statistical features are extracted. Finally, breast cancer is detected using the DL model, SqueezeNet. Here, the newly devised Flamingo Search SailFish Optimizer (FSSFO) is used in training Psi-Net as well as SqueezeNet. Furthermore, FSSFO is the combination of both the Flamingo Search Algorithm (FSA) and SailFish Optimizer (SFO).
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Affiliation(s)
- P Vijaya
- Department of Mathematics & Computer Science, Modern College of Business and Sciences, Muscat, Oman
| | - Satish Chander
- Department of Computer Science and Engineering, Birla Institute of Technology, Ranchi, India
| | - Roshan Fernandes
- Department of Cyber Security, NMAM Institute of Technology, NITTE (Deemed to be University), Nitte, India
| | - Anisha P Rodrigues
- Department of Computer Science and Engineering, NMAM Institute of Technology, NITTE (Deemed to be University), Nitte, India
| | - Maheswari Raja
- School of Computer Science and Information Technology, Symbiosis Skills and Professional University, Pune, India
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18
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Vujić A, Klasić M, Lauc G, Polašek O, Zoldoš V, Vojta A. Predicting Biochemical and Physiological Parameters: Deep Learning from IgG Glycome Composition. Int J Mol Sci 2024; 25:9988. [PMID: 39337475 PMCID: PMC11432235 DOI: 10.3390/ijms25189988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Revised: 08/29/2024] [Accepted: 09/11/2024] [Indexed: 09/30/2024] Open
Abstract
In immunoglobulin G (IgG), N-glycosylation plays a pivotal role in structure and function. It is often altered in different diseases, suggesting that it could be a promising health biomarker. Studies indicate that IgG glycosylation not only associates with various diseases but also has predictive capabilities. Additionally, changes in IgG glycosylation correlate with physiological and biochemical traits known to reflect overall health state. This study aimed to investigate the power of IgG glycans to predict physiological and biochemical parameters. We developed two models using IgG N-glycan data as an input: a regression model using elastic net and a machine learning model using deep learning. Data were obtained from the Korčula and Vis cohorts. The Korčula cohort data were used to train both models, while the Vis cohort was used exclusively for validation. Our results demonstrated that IgG glycome composition effectively predicts several biochemical and physiological parameters, especially those related to lipid and glucose metabolism and cardiovascular events. Both models performed similarly on the Korčula cohort; however, the deep learning model showed a higher potential for generalization when validated on the Vis cohort. This study reinforces the idea that IgG glycosylation reflects individuals' health state and brings us one step closer to implementing glycan-based diagnostics in personalized medicine. Additionally, it shows that the predictive power of IgG glycans can be used for imputing missing covariate data in deep learning frameworks.
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Affiliation(s)
- Ana Vujić
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Marija Klasić
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Gordan Lauc
- Genos Glycoscience Research Laboratory, 10000 Zagreb, Croatia
- Faculty of Pharmacy and Biochemistry, University of Zagreb, 10000 Zagreb, Croatia
| | - Ozren Polašek
- Department of Public Health, University of Split School of Medicine, 21000 Split, Croatia
- Croatian Science Foundation, 10000 Zagreb, Croatia
| | - Vlatka Zoldoš
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Aleksandar Vojta
- Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
- Genos Glycoscience Research Laboratory, 10000 Zagreb, Croatia
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19
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Qu C, Xia F, Chen L, Li HJ, Li WM. Diagnostic Value of Artificial Intelligence in Minimal Breast Lesions Based on Real-Time Dynamic Ultrasound Imaging. Int J Gen Med 2024; 17:4061-4069. [PMID: 39295853 PMCID: PMC11409927 DOI: 10.2147/ijgm.s479969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Accepted: 09/09/2024] [Indexed: 09/21/2024] Open
Abstract
Purpose : To explore the diagnostic value of artificial intelligence (AI)-based on real-time dynamic ultrasound imaging system for minimal breast lesions. Patients and Methods Minimal breast lesions with a maximum diameter of ≤10mm were selected in this prospective study. The ultrasound equipment and AI system were activated Simultaneously. The ultrasound imaging video is connected to the server of AI system to achieve simultaneous output of AI and ultrasound scanning. Dynamic observation of breast lesions was conducted via ultrasound. And these lesions were evaluated and graded according to the Breast Imaging Reporting and Data System (BI-RADS) classification system through deep learning (DL) algorithms in AI. Surgical pathology was taken as the gold standard, and ROC curves were drawn to determine the area under the curve (AUC) and the optimal threshold values of BI-RADS. The diagnostic efficacy was compared with the use of a BI-RADS category >3 as the threshold for clinically intervening in diagnosing minimal breast cancers. Results 291 minimal breast lesions were enrolled in the study, of which 228 were benign (78.35%) and 63 were malignant (21.65%). The AUC of the ROC curve was 0.833, with the best threshold value >4A. When using >BI-RADS 3 and >BI-RADS 4A as threshold values, the sensitivity and negative predictive value for minimal breast cancers were higher for >BI-RADS 3 than >BI-RADS 4A (100% vs 65.08%, 100% vs 89.91%, P values <0.001). However, the corresponding specificity, positive predictive value, and accuracy were lower than those for >BI-RADS 4A (42.11% vs 85.96%, 32.31% vs 56.16%, and 54.64% vs 81.44%, P values <0.001). Conclusion The AI-based real-time dynamic ultrasound imaging system shows good capacity in diagnosing minimal breast lesions, which is helpful for early diagnosis and treatment of breast cancer, and improves the prognosis of patients. However, it still results in some missed diagnoses and misdiagnoses of minimal breast cancers.
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Affiliation(s)
- Chen Qu
- Department of Ultrasonography, Affiliated Hospital of Jiangnan University, Wuxi, Jiangsu, People's Republic of China
| | - Fei Xia
- Department of Ultrasonography, Huai'an Cancer Hospital, Huai'an, Jiangsu, People's Republic of China
| | - Ling Chen
- Department of Ultrasonography, Affiliated Hospital of Jiangnan University, Wuxi, Jiangsu, People's Republic of China
| | - Hong-Jian Li
- Department of Ultrasonography, Huai'an Cancer Hospital, Huai'an, Jiangsu, People's Republic of China
| | - Wei-Min Li
- Department of Ultrasonography, Affiliated Hospital of Jiangnan University, Wuxi, Jiangsu, People's Republic of China
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20
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Darbandi MR, Darbandi M, Darbandi S, Bado I, Hadizadeh M, Khorram Khorshid HR. Artificial intelligence breakthroughs in pioneering early diagnosis and precision treatment of breast cancer: A multimethod study. Eur J Cancer 2024; 209:114227. [PMID: 39053289 DOI: 10.1016/j.ejca.2024.114227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2024] [Accepted: 07/07/2024] [Indexed: 07/27/2024]
Abstract
This article delves into the potential of artificial intelligence (AI) to enhance early breast cancer (BC) detection for improved treatment outcomes and patient care. Utilizing a multimethod approach comprising literature review and experiments, the study systematically reviewed 310 articles utilizing 30 diverse datasets. Among the techniques assessed, recurrent neural network (RNN) emerged as the most accurate, achieving 98.58 % accuracy, followed by genetic principles (GP), transfer learning (TL), and artificial neural networks (ANNs), with accuracies exceeding 96 %. While conventional machine learning (ML) methods demonstrated accuracies above 90 %, DL techniques outperformed them. Evaluation of BC diagnostic models using the Wisconsin breast cancer dataset (WBCD) highlighted logistic regression (LR) and support vector machine (SVM) as the most accurate predictors, with minimal errors for clinical data. Conversely, decision trees (DT) exhibited higher error rates due to overfitting, emphasizing the importance of algorithm selection for complex datasets. Analysis of ultrasound images underscored the significance of preprocessing, while histopathological image analysis using convolutional neural networks (CNNs) demonstrated robust classification capabilities. These findings underscore the transformative potential of ML and DL in BC diagnosis, offering automated, accurate, and accessible diagnostic tools. Collaboration among stakeholders is crucial for further advancements in BC detection methods.
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Affiliation(s)
| | - Mahsa Darbandi
- Fetal Health Research Center, Hope Generation Foundation, Tehran, Iran.
| | - Sara Darbandi
- Gene Therapy and Regenerative Medicine Research Center, Hope Generation Foundation, Tehran, Iran.
| | - Igor Bado
- Department of Oncological Sciences, Tisch Cancer Institute, New York, USA.
| | - Mohammad Hadizadeh
- Cancer Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Hamid Reza Khorram Khorshid
- Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran; Personalized Medicine and Genometabolics Research Center, Hope Generation Foundation, Tehran, Iran.
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21
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Lin Z, Chen L, Wang Y, Zhang T, Huang P. Improving ultrasound diagnostic Precision for breast cancer and adenosis with modality-specific enhancement (MSE) - Breast Net. Cancer Lett 2024; 596:216977. [PMID: 38795759 DOI: 10.1016/j.canlet.2024.216977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 05/10/2024] [Accepted: 05/18/2024] [Indexed: 05/28/2024]
Abstract
Adenosis is a benign breast condition whose lesions can mimic breast carcinoma and is evaluated for malignancy with the Breast Imaging-Reporting and Data System (BI-RADS). We construct and validate the performance of modality-specific enhancement (MSE)-Breast Net based on multimodal ultrasound images and compare it to the BI-RADS in differentiating adenosis from breast cancer. A total of 179 patients with breast carcinoma and 229 patients with adenosis were included in this retrospective, two-institution study, then divided into a training cohort (institution I, n = 292) and a validation cohort (institution II, n = 116). In the training cohort, the final model had a significantly greater AUC (0.82; P < 0.05) than B-mode-based model (0.69, 95% CI [0.49-0.90]). In the validation cohort, the AUC of the final model was 0.81, greater than that of the BI-RADS (0.75, P < 0.05). The multimodal model outperformed the individual and bimodal models, reaching a significantly greater AUC of 0.87 (95% CI = 0.69-1.0) (P < 0.05). MSE-Breast Net, based on multimodal ultrasound images, exhibited better diagnostic performance than the BI-RADS in differentiating adenosis from breast cancer and may contribute to clinical diagnosis and treatment.
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Affiliation(s)
- Zimei Lin
- Department of Ultrasound in Medicine, The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, 310009, China
| | - Libin Chen
- Department of Ultrasound in Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, 315201, China
| | - Yunzhong Wang
- Department of Ultrasound in Medicine, The First Affiliated Hospital of Ningbo University, Ningbo, 315201, China
| | - Tao Zhang
- Department of Ultrasound in Medicine, The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, 310009, China.
| | - Pintong Huang
- Department of Ultrasound in Medicine, The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, 310009, China; Research Center of Ultrasound in Medicine and Biomedical Engineering, The Second Affiliated Hospital of Zhejiang University School of Medicine, Hangzhou, 310009, China; Research Center for Life Science and Human Health, Binjiang Institute of Zhejiang University, Hangzhou, 310053, China.
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22
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Chen JY, Li JD, He RQ, Huang ZG, Chen G, Zou W. Bibliometric analysis of phosphoglycerate kinase 1 expression in breast cancer and its distinct upregulation in triple-negative breast cancer. World J Clin Oncol 2024; 15:867-894. [PMID: 39071464 PMCID: PMC11271732 DOI: 10.5306/wjco.v15.i7.867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 05/27/2024] [Accepted: 06/24/2024] [Indexed: 07/16/2024] Open
Abstract
BACKGROUND Phosphoglycerate kinase 1 (PGK1) has been identified as a possible biomarker for breast cancer (BC) and may play a role in the development and advancement of triple-negative BC (TNBC). AIM To explore the PGK1 and BC research status and PGK1 expression and mechanism differences among TNBC, non-TNBC, and normal breast tissue. METHODS PGK1 and BC related literature was downloaded from Web of Science Core Collection Core Collection. Publication counts, key-word frequency, cooperation networks, and theme trends were analyzed. Normal breast, TNBC, and non-TNBC mRNA data were gathered, and differentially expressed genes obtained. Area under the summary receiver operating characteristic curves, sensitivity and specificity of PGK1 expression were determined. Kaplan Meier revealed PGK1's prognostic implication. PGK1 co-expressed genes were explored, and Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Disease Ontology applied. Protein-protein interaction networks were constructed. Hub genes identified. RESULTS PGK1 and BC related publications have surged since 2020, with China leading the way. The most frequent keyword was "Expression". Collaborative networks were found among co-citations, countries, institutions, and authors. PGK1 expression and BC progression were research hotspots, and PGK1 expression and BC survival were research frontiers. In 16 TNBC vs non-cancerous breast and 15 TNBC vs non-TNBC datasets, PGK1 mRNA levels were higher in 1159 TNBC than 1205 non-cancerous breast cases [standardized mean differences (SMD): 0.85, 95% confidence interval (95%CI): 0.54-1.16, I² = 86%, P < 0.001]. PGK1 expression was higher in 1520 TNBC than 7072 non-TNBC cases (SMD: 0.25, 95%CI: 0.03-0.47, I² = 91%, P = 0.02). Recurrence free survival was lower in PGK1-high-expression than PGK1-low-expression group (hazard ratio: 1.282, P = 0.023). PGK1 co-expressed genes were concentrated in ATP metabolic process, HIF-1 signaling, and glycolysis/gluconeogenesis pathways. CONCLUSION PGK1 expression is a research hotspot and frontier direction in the BC field. PGK1 may play a strong role in promoting cancer in TNBC by mediating metabolism and HIF-1 signaling pathways.
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Affiliation(s)
- Jing-Yu Chen
- Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
| | - Jian-Di Li
- Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
| | - Rong-Quan He
- Department of Medical Oncology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
| | - Zhi-Guang Huang
- Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
| | - Gang Chen
- Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
| | - Wen Zou
- Department of Pathology, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, Guangxi Zhuang Autonomous Region, China
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Kołodziejska R, Tafelska-Kaczmarek A, Pawluk M, Sergot K, Pisarska L, Woźniak A, Pawluk H. Ashwagandha-Induced Programmed Cell Death in the Treatment of Breast Cancer. Curr Issues Mol Biol 2024; 46:7668-7685. [PMID: 39057095 PMCID: PMC11275341 DOI: 10.3390/cimb46070454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Revised: 07/15/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024] Open
Abstract
The aim of this review is to provide experimental evidence for the programmed-death activity of Ashwagandha (Withania somnifera) in the anti-cancer therapy of breast cancer. The literature search was conducted using online electronic databases (Google Scholar, PubMed, Scopus). Collection schedule data for the review article covered the years 2004-2024. Ashwagandha active substances, especially Withaferin A (WA), are the most promising anti-cancer compounds. WS exerts its effect on breast cancer cells by inducing programmed cell death, especially apoptosis, at the molecular level. Ashwagandha has been found to possess a potential for treating breast cancer, especially estrogen receptor/progesterone receptor (ER/PR)-positive and triple-negative breast cancer.
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Affiliation(s)
- Renata Kołodziejska
- Department of Medical Biology and Biochemistry, Faculty of Medicine, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karłowicza 24, 85-092 Bydgoszcz, Poland; (M.P.); (L.P.); (H.P.)
| | - Agnieszka Tafelska-Kaczmarek
- Department of Organic Chemistry, Faculty of Chemistry, Nicolaus Copernicus University, Gagarina 7, 87-100 Toruń, Poland;
| | - Mateusz Pawluk
- Department of Medical Biology and Biochemistry, Faculty of Medicine, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karłowicza 24, 85-092 Bydgoszcz, Poland; (M.P.); (L.P.); (H.P.)
| | - Krzysztof Sergot
- Laboratory of Laser Molecular Spectroscopy, Institute of Applied Radiation Chemistry, Faculty of Chemistry, Lodz University of Technology, Wroblewskiego 15, 93-590 Lodz, Poland;
| | - Lucyna Pisarska
- Department of Medical Biology and Biochemistry, Faculty of Medicine, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karłowicza 24, 85-092 Bydgoszcz, Poland; (M.P.); (L.P.); (H.P.)
| | - Alina Woźniak
- Department of Medical Biology and Biochemistry, Faculty of Medicine, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karłowicza 24, 85-092 Bydgoszcz, Poland; (M.P.); (L.P.); (H.P.)
| | - Hanna Pawluk
- Department of Medical Biology and Biochemistry, Faculty of Medicine, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karłowicza 24, 85-092 Bydgoszcz, Poland; (M.P.); (L.P.); (H.P.)
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Norouzi Ghehi E, Fallah A, Rashidi S, Mehdizadeh Dastjerdi M. Evaluating the effect of tissue stimulation at different frequencies on breast lesion classification based on nonlinear features using a novel radio frequency time series approach. Heliyon 2024; 10:e33133. [PMID: 39027586 PMCID: PMC11255572 DOI: 10.1016/j.heliyon.2024.e33133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 06/13/2024] [Accepted: 06/14/2024] [Indexed: 07/20/2024] Open
Abstract
Objective Radio Frequency Time Series (RF TS) is a cutting-edge ultrasound approach in tissue typing. The RF TS does not provide dynamic insights into the propagation medium; when the tissue and probe are fixed. We previously proposed the innovative RFTSDP method in which the RF data are recorded while stimulating the tissue. Applying stimulation can unveil the mechanical characteristics of the tissue in RF echo. Materials and methods In this study, an apparatus was developed to induce vibrations at different frequencies to the medium. Data were collected from four PVA phantoms simulating the nonlinear behaviors of healthy, fibroadenoma, cyst, and cancerous breast tissues. Raw focused, raw, and beamformed ultrafast data were collected under conditions of no stimulation, constant force, and various vibrational stimulations using the Supersonic Imagine Aixplorer clinical/research ultrasound imaging system. Time domain (TD), spectral, and nonlinear features were extracted from each RF TS. Support Vector Machine (SVM), Random Forest, and Decision Tree algorithms were employed for classification. Results The optimal outcome was achieved using the SVM classifier considering 19 features extracted from beamformed ultrafast data recorded while applying vibration at the frequency of 65 Hz. The classification accuracy, specificity, and precision were 98.44 ± 0.20 %, 99.49 ± 0.01 %, and 98.53 ± 0.04 %, respectively. Applying RFTSDP, a notable 24.45 % improvement in accuracy was observed compared to the case of fixed probe assessing the recorded raw focused data. Conclusions External vibration at an appropriate frequency, as applied in RFTSDP, incorporates beneficial information about the medium and its dynamic characteristics into the RF TS, which can improve tissue characterization.
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Affiliation(s)
- Elaheh Norouzi Ghehi
- Faculty of Biomedical Engineering, Amirkabir University of Technology, Tehran, Iran
| | - Ali Fallah
- Faculty of Biomedical Engineering, Amirkabir University of Technology, Tehran, Iran
| | - Saeid Rashidi
- Faculty of Medical Sciences and Technologies, Science and Research Branch, Islamic Azad University, Tehran, Iran
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25
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Wang Z, Sui X, Song W, Xue F, Han W, Hu Y, Jiang J. Reinforcement learning for individualized lung cancer screening schedules: A nested case-control study. Cancer Med 2024; 13:e7436. [PMID: 38949177 PMCID: PMC11215689 DOI: 10.1002/cam4.7436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 05/28/2024] [Accepted: 06/18/2024] [Indexed: 07/02/2024] Open
Abstract
BACKGROUND The current guidelines for managing screen-detected pulmonary nodules offer rule-based recommendations for immediate diagnostic work-up or follow-up at intervals of 3, 6, or 12 months. Customized visit plans are lacking. PURPOSE To develop individualized screening schedules using reinforcement learning (RL) and evaluate the effectiveness of RL-based policy models. METHODS Using a nested case-control design, we retrospectively identified 308 patients with cancer who had positive screening results in at least two screening rounds in the National Lung Screening Trial. We established a control group that included cancer-free patients with nodules, matched (1:1) according to the year of cancer diagnosis. By generating 10,164 sequence decision episodes, we trained RL-based policy models, incorporating nodule diameter alone, combined with nodule appearance (attenuation and margin) and/or patient information (age, sex, smoking status, pack-years, and family history). We calculated rates of misdiagnosis, missed diagnosis, and delayed diagnosis, and compared the performance of RL-based policy models with rule-based follow-up protocols (National Comprehensive Cancer Network guideline; China Guideline for the Screening and Early Detection of Lung Cancer). RESULTS We identified significant interactions between certain variables (e.g., nodule shape and patient smoking pack-years, beyond those considered in guideline protocols) and the selection of follow-up testing intervals, thereby impacting the quality of the decision sequence. In validation, one RL-based policy model achieved rates of 12.3% for misdiagnosis, 9.7% for missed diagnosis, and 11.7% for delayed diagnosis. Compared with the two rule-based protocols, the three best-performing RL-based policy models consistently demonstrated optimal performance for specific patient subgroups based on disease characteristics (benign or malignant), nodule phenotypes (size, shape, and attenuation), and individual attributes. CONCLUSIONS This study highlights the potential of using an RL-based approach that is both clinically interpretable and performance-robust to develop personalized lung cancer screening schedules. Our findings present opportunities for enhancing the current cancer screening system.
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Affiliation(s)
- Zixing Wang
- Peking University People's HospitalPeking University Hepatology Institute, Beijing Key Laboratory of Hepatitis C and Immunotherapy for Liver DiseasesBeijingChina
- Department of Epidemiology and BiostatisticsInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences & School of Basic Medicine, Peking Union Medical CollegeBeijingChina
| | - Xin Sui
- Department of RadiologyPeking Union Medical College HospitalBeijingChina
| | - Wei Song
- Department of RadiologyPeking Union Medical College HospitalBeijingChina
| | - Fang Xue
- Department of Epidemiology and BiostatisticsInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences & School of Basic Medicine, Peking Union Medical CollegeBeijingChina
| | - Wei Han
- Department of Epidemiology and BiostatisticsInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences & School of Basic Medicine, Peking Union Medical CollegeBeijingChina
| | - Yaoda Hu
- Department of Epidemiology and BiostatisticsInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences & School of Basic Medicine, Peking Union Medical CollegeBeijingChina
| | - Jingmei Jiang
- Department of Epidemiology and BiostatisticsInstitute of Basic Medical Sciences, Chinese Academy of Medical Sciences & School of Basic Medicine, Peking Union Medical CollegeBeijingChina
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26
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Aldakhil LA, Alhasson HF, Alharbi SS. Attention-Based Deep Learning Approach for Breast Cancer Histopathological Image Multi-Classification. Diagnostics (Basel) 2024; 14:1402. [PMID: 39001292 PMCID: PMC11241245 DOI: 10.3390/diagnostics14131402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 06/18/2024] [Accepted: 06/18/2024] [Indexed: 07/16/2024] Open
Abstract
Breast cancer diagnosis from histopathology images is often time consuming and prone to human error, impacting treatment and prognosis. Deep learning diagnostic methods offer the potential for improved accuracy and efficiency in breast cancer detection and classification. However, they struggle with limited data and subtle variations within and between cancer types. Attention mechanisms provide feature refinement capabilities that have shown promise in overcoming such challenges. To this end, this paper proposes the Efficient Channel Spatial Attention Network (ECSAnet), an architecture built on EfficientNetV2 and augmented with a convolutional block attention module (CBAM) and additional fully connected layers. ECSAnet was fine-tuned using the BreakHis dataset, employing Reinhard stain normalization and image augmentation techniques to minimize overfitting and enhance generalizability. In testing, ECSAnet outperformed AlexNet, DenseNet121, EfficientNetV2-S, InceptionNetV3, ResNet50, and VGG16 in most settings, achieving accuracies of 94.2% at 40×, 92.96% at 100×, 88.41% at 200×, and 89.42% at 400× magnifications. The results highlight the effectiveness of CBAM in improving classification accuracy and the importance of stain normalization for generalizability.
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Affiliation(s)
| | - Haifa F. Alhasson
- Department of Information Technology, College of Computer, Qassim University, Buraydah 52571, Saudi Arabia; (L.A.A.); (S.S.A.)
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Baniasadi A, Das JP, Prendergast CM, Beizavi Z, Ma HY, Jaber MY, Capaccione KM. Imaging at the nexus: how state of the art imaging techniques can enhance our understanding of cancer and fibrosis. J Transl Med 2024; 22:567. [PMID: 38872212 PMCID: PMC11177383 DOI: 10.1186/s12967-024-05379-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Accepted: 06/06/2024] [Indexed: 06/15/2024] Open
Abstract
Both cancer and fibrosis are diseases involving dysregulation of cell signaling pathways resulting in an altered cellular microenvironment which ultimately leads to progression of the condition. The two disease entities share common molecular pathophysiology and recent research has illuminated the how each promotes the other. Multiple imaging techniques have been developed to aid in the early and accurate diagnosis of each disease, and given the commonalities between the pathophysiology of the conditions, advances in imaging one disease have opened new avenues to study the other. Here, we detail the most up-to-date advances in imaging techniques for each disease and how they have crossed over to improve detection and monitoring of the other. We explore techniques in positron emission tomography (PET), magnetic resonance imaging (MRI), second generation harmonic Imaging (SGHI), ultrasound (US), radiomics, and artificial intelligence (AI). A new diagnostic imaging tool in PET/computed tomography (CT) is the use of radiolabeled fibroblast activation protein inhibitor (FAPI). SGHI uses high-frequency sound waves to penetrate deeper into the tissue, providing a more detailed view of the tumor microenvironment. Artificial intelligence with the aid of advanced deep learning (DL) algorithms has been highly effective in training computer systems to diagnose and classify neoplastic lesions in multiple organs. Ultimately, advancing imaging techniques in cancer and fibrosis can lead to significantly more timely and accurate diagnoses of both diseases resulting in better patient outcomes.
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Affiliation(s)
- Alireza Baniasadi
- Department of Radiology, Columbia University Irving Medical Center, 622 W 168Th Street, New York, NY, 10032, USA.
| | - Jeeban P Das
- Department of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Conor M Prendergast
- Department of Radiology, Columbia University Irving Medical Center, 622 W 168Th Street, New York, NY, 10032, USA
| | - Zahra Beizavi
- Department of Radiology, Columbia University Irving Medical Center, 622 W 168Th Street, New York, NY, 10032, USA
| | - Hong Y Ma
- Department of Radiology, Columbia University Irving Medical Center, 622 W 168Th Street, New York, NY, 10032, USA
| | | | - Kathleen M Capaccione
- Department of Radiology, Columbia University Irving Medical Center, 622 W 168Th Street, New York, NY, 10032, USA
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Patra R, Halder S, Saha R, Jana K, Sarkar K. Highly Efficient Photoswitchable Smart Polymeric Nanovehicle for Gene and Anticancer Drug Delivery in Triple-Negative Breast Cancer. ACS Biomater Sci Eng 2024; 10:2299-2323. [PMID: 38551335 DOI: 10.1021/acsbiomaterials.4c00115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]
Abstract
Over the past few decades, there has been significant interest in smart drug delivery systems capable of carrying multiple drugs efficiently, particularly for treating genetic diseases such as cancer. Despite the development of various drug delivery systems, a safe and effective method for delivering both anticancer drugs and therapeutic genes for cancer therapy remains elusive. In this study, we describe the synthesis of a photoswitchable smart polymeric vehicle comprising a photoswitchable spiropyran moiety and an amino-acid-based cationic monomer-based block copolymer using reversible addition-fragmentation chain transfer (RAFT) polymerization. This system aims at diagnosing triple-negative breast cancer and subsequently delivering genes and anticancer agents. Triple-negative breast cancer patients have elevated concentrations of Cu2+ ions, making them excellent targets for diagnosis. The polymer can detect Cu2+ ions with a low limit of detection value of 9.06 nM. In vitro studies on doxorubicin drug release demonstrated sustained delivery at acidic pH level similar to the tumor environment. Furthermore, the polymer exhibited excellent blood compatibility even at the concentration as high as 500 μg/mL. Additionally, it displayed a high transfection efficiency of approximately 82 ± 5% in MDA-MB-231 triple-negative breast cancer cells at an N/P ratio of 50:1. It is observed that mitochondrial membrane depolarization and intracellular reactive oxygen species generation are responsible for apoptosis and the higher number of apoptotic cells, which occurred through the arrest of the G2/M phase of the cell cycle were observed. Therefore, the synthesized light-responsive cationic polymer may be an effective system for diagnosis, with an efficient anticancer drug and gene carrier for the treatment of triple-negative breast cancer in the future.
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Affiliation(s)
- Rishik Patra
- Gene Therapy and Tissue Engineering Lab, Department of Polymer Science and Technology, University of Calcutta, 92, A.P.C. Road, Kolkata 700009, India
| | - Satyajit Halder
- Division of Molecular Medicine, Centenary Campus, Bose Institute, P-1/12 C.I.T. Scheme VII-M, Kolkata 700054, India
| | - Rima Saha
- Gene Therapy and Tissue Engineering Lab, Department of Polymer Science and Technology, University of Calcutta, 92, A.P.C. Road, Kolkata 700009, India
| | - Kuladip Jana
- Division of Molecular Medicine, Centenary Campus, Bose Institute, P-1/12 C.I.T. Scheme VII-M, Kolkata 700054, India
| | - Kishor Sarkar
- Gene Therapy and Tissue Engineering Lab, Department of Polymer Science and Technology, University of Calcutta, 92, A.P.C. Road, Kolkata 700009, India
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29
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You Z, Han B, Shi Z, Zhao M, Du S, Liu H, Hei X, Ren X, Yan Y. Vocal Cord Leukoplakia Classification Using Siamese Network Under Small Samples of White Light Endoscopy Images. Otolaryngol Head Neck Surg 2024; 170:1099-1108. [PMID: 38037413 DOI: 10.1002/ohn.591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 10/25/2023] [Accepted: 11/02/2023] [Indexed: 12/02/2023]
Abstract
OBJECTIVE Accurate vocal cord leukoplakia classification is instructive for clinical diagnosis and surgical treatment. This article introduces a reliable very deep Siamese network for accurate vocal cord leukoplakia classification. STUDY DESIGN A study of a classification network based on a retrospective database. SETTING Academic university and hospital. METHODS The white light image datasets of vocal cord leukoplakia used in this article were classified into 6 classes: normal tissues, inflammatory keratosis, mild dysplasia, moderate dysplasia, severe dysplasia, and squamous cell carcinoma. The classification performance was assessed by comparing it with 6 classical deep learning models, including AlexNet, VGG Net, Google Inception, ResNet, DenseNet, and Vision Transformer. RESULTS Experiments show the superior classification performance of our proposed network compared to state-of-the-art methods. The overall accuracy is 0.9756. The values of sensitivity and specificity are very high as well. The confusion matrix provides information for the 6-class classification task and demonstrates the superiority of our proposed network. CONCLUSION Our very deep Siamese network can provide accurate classification results of vocal cord leukoplakia, which facilitates early detection, clinical diagnosis, and surgical treatment. The excellent performance obtained in white light images can reduce the cost for patients, especially those living in developing countries.
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Affiliation(s)
- Zhenzhen You
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Botao Han
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Zhenghao Shi
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Minghua Zhao
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Shuangli Du
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Haiqin Liu
- Department of Otorhinolaryngology, Second Affiliated Hospital of Medical College, Xi'an Jiaotong University, Xi'an, China
| | - Xinhong Hei
- Scool of Computer Science and Engineering, Shaanxi Key Laboratory for Network Computing and Security Technology, School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, China
| | - Xiaoyong Ren
- Department of Otorhinolaryngology, Second Affiliated Hospital of Medical College, Xi'an Jiaotong University, Xi'an, China
| | - Yan Yan
- Department of Otorhinolaryngology, Second Affiliated Hospital of Medical College, Xi'an Jiaotong University, Xi'an, China
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30
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Jaganathan D, Balasubramaniam S, Sureshkumar V, Dhanasekaran S. Revolutionizing Breast Cancer Diagnosis: A Concatenated Precision through Transfer Learning in Histopathological Data Analysis. Diagnostics (Basel) 2024; 14:422. [PMID: 38396461 PMCID: PMC10887508 DOI: 10.3390/diagnostics14040422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 02/03/2024] [Accepted: 02/07/2024] [Indexed: 02/25/2024] Open
Abstract
Breast cancer remains a significant global public health concern, emphasizing the critical role of accurate histopathological analysis in diagnosis and treatment planning. In recent years, the advent of deep learning techniques has showcased notable potential in elevating the precision and efficiency of histopathological data analysis. The proposed work introduces a novel approach that harnesses the power of Transfer Learning to capitalize on knowledge gleaned from pre-trained models, adapting it to the nuanced landscape of breast cancer histopathology. Our proposed model, a Transfer Learning-based concatenated model, exhibits substantial performance enhancements compared to traditional methodologies. Leveraging well-established pretrained models such as VGG-16, MobileNetV2, ResNet50, and DenseNet121-each Convolutional Neural Network architecture designed for classification tasks-this study meticulously tunes hyperparameters to optimize model performance. The implementation of a concatenated classification model is systematically benchmarked against individual classifiers on histopathological data. Remarkably, our concatenated model achieves an impressive training accuracy of 98%. The outcomes of our experiments underscore the efficacy of this four-level concatenated model in advancing the accuracy of breast cancer histopathological data analysis. By synergizing the strengths of deep learning and transfer learning, our approach holds the potential to augment the diagnostic capabilities of pathologists, thereby contributing to more informed and personalized treatment planning for individuals diagnosed with breast cancer. This research heralds a promising stride toward leveraging cutting-edge technology to refine the understanding and management of breast cancer, marking a significant advancement in the intersection of artificial intelligence and healthcare.
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Affiliation(s)
- Dhayanithi Jaganathan
- Department of Computer Science and Engineering, Sona College of Technology, Salem 636005, India;
| | | | - Vidhushavarshini Sureshkumar
- Department of Computer Science and Engineering, Faculty of Engineering and Technology, SRM Institute of Science and Technology, Vadapalani Campus, Chennai 600026, India;
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Zheng H, Jian L, Li L, Liu W, Chen W. Prior Clinico-Radiological Features Informed Multi-Modal MR Images Convolution Neural Network: A novel deep learning framework for prediction of lymphovascular invasion in breast cancer. Cancer Med 2024; 13:e6932. [PMID: 38230837 PMCID: PMC10905682 DOI: 10.1002/cam4.6932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 12/14/2023] [Accepted: 01/02/2024] [Indexed: 01/18/2024] Open
Abstract
BACKGROUND Current methods utilizing preoperative magnetic resonance imaging (MRI)-based radiomics for assessing lymphovascular invasion (LVI) in patients with early-stage breast cancer lack precision, limiting the options for surgical planning. PURPOSE This study aimed to develop a sophisticated deep learning framework called "Prior Clinico-Radiological Features Informed Multi-Modal MR Images Convolutional Neural Network (PCMM-Net)" to improve the accuracy of LVI prediction in breast cancer. By incorporating multiparameter MRI and prior clinical knowledge, PCMM-Net should enhance the precision of LVI assessment. METHODS A total of 341 patients with breast cancer were randomly divided into training and validation groups at a ratio of 7:3. Imaging features were extracted from T1-weighted, T2-weighted, and contrast-enhanced T1-weighted MRI sequences. Stepwise univariate and multivariate logistic regression were employed to establish a clinico-radiological model for LVI prediction. The radiomics model was built using redundancy and the least absolute shrinkage and selection operator. Then, two deep learning frameworks were developed: the Multi-Modal MR Images Convolutional Neural Network (MM-Net), which does not consider prior radiological features, and PCMM-Net, which incorporates multiparameter MRI and prior clinical knowledge. Receiver operating characteristic curves were used, and the corresponding areas under the curves (AUCs) were calculated for evaluation. RESULTS PCMM-Net achieved the highest AUC of 0.843. The clinico-radiological features displayed the lowest AUC value of 0.743, followed by MM-Net with an AUC of 0.774, and radiomics with an AUC of 0.795. CONCLUSIONS This study introduces PCMM-Net, an innovative deep learning framework that integrates prior clinico-radiological features for accurate LVI prediction in breast cancer. PCMM-Net demonstrates excellent diagnostic performance and facilitates the application of precision medicine.
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Affiliation(s)
- Hong Zheng
- Department of Radiology, Hunan Cancer Hospital, The Affiliated Cancer Hospital of Xiangya School of MedicineCentral South UniversityChangshaHunanChina
| | - Lian Jian
- Department of Radiology, Hunan Cancer Hospital, The Affiliated Cancer Hospital of Xiangya School of MedicineCentral South UniversityChangshaHunanChina
| | - Li Li
- Department of RadiologyHunan Children's HospitalChangshaHunanChina
| | - Wen Liu
- Department of RadiologyThe Third Xiang Ya HospitalCentral South UniversityChangshaHunanChina
| | - Wei Chen
- Department of RadiologyThe Second People's Hospital of Hunan Province, Brain Hospital of Hunan ProvinceChangshaHunanChina
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Jiang X, Feng C, Sun W, Feng L, Hao Y, Liu Q, Cui B. Enhancing clinical decision-making in endometrial cancer through deep learning technology: A review of current research. Digit Health 2024; 10:20552076241297053. [PMID: 39559386 PMCID: PMC11571264 DOI: 10.1177/20552076241297053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 10/17/2024] [Indexed: 11/20/2024] Open
Abstract
Endometrial cancer (EC), a growing malignancy among women, underscores an urgent need for early detection and intervention, critical for enhancing patient outcomes and survival rates. Traditional diagnostic approaches, including ultrasound (US), magnetic resonance imaging (MRI), hysteroscopy, and histopathology, have been essential in establishing robust diagnostic and prognostic frameworks for EC. These methods offer detailed insights into tumor morphology, vital for clinical decision-making. However, their analysis relies heavily on the expertise of radiologists and pathologists, a process that is not only time-consuming and labor-intensive but also prone to human error. The emergence of deep learning (DL) in computer vision has significantly transformed medical image analysis, presenting substantial potential for EC diagnosis. DL models, capable of autonomously learning and extracting complex features from imaging and histopathological data, have demonstrated remarkable accuracy in discriminating EC and stratifying patient prognoses. This review comprehensively examines and synthesizes the current literature on DL-based imaging techniques for EC diagnosis and management. It also aims to identify challenges faced by DL in this context and to explore avenues for its future development. Through these detailed analyses, our objective is to inform future research directions and promote the integration of DL into EC diagnostic and treatment strategies, thereby enhancing the precision and efficiency of clinical practice.
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Affiliation(s)
- Xuji Jiang
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Chuanli Feng
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Wanying Sun
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Lianlian Feng
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Yiping Hao
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Qingqing Liu
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
| | - Baoxia Cui
- Department of Obstetrics and Gynecology, Qilu Hospital of Shandong University, Jinan City, China
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Sajjad Ahmed Nadeem M, Hammad Waseem M, Aziz W, Habib U, Masood A, Attique Khan M. Hybridizing Artificial Neural Networks Through Feature Selection Based Supervised Weight Initialization and Traditional Machine Learning Algorithms for Improved Colon Cancer Prediction. IEEE ACCESS 2024; 12:97099-97114. [DOI: 10.1109/access.2024.3422317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2024]
Affiliation(s)
- Malik Sajjad Ahmed Nadeem
- Department of Computer Science and Information Technology, The University of Azad Jammu and Kashmir, Muzaffarabad, Pakistan
| | - Muhammad Hammad Waseem
- Department of Computer Science and Information Technology, The University of Azad Jammu and Kashmir, Muzaffarabad, Pakistan
| | - Wajid Aziz
- Department of Computer Science and Information Technology, The University of Azad Jammu and Kashmir, Muzaffarabad, Pakistan
| | - Usman Habib
- Software Engineering Department, FAST School of Computing, National University of Computer and Emerging Sciences, Islamabad, Pakistan
| | - Anum Masood
- Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway
| | - Muhammad Attique Khan
- Department of Computer Science and Mathematics, Lebanese American University, Beirut, Lebanon
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Ciobotaru A, Bota MA, Goța DI, Miclea LC. Multi-Instance Classification of Breast Tumor Ultrasound Images Using Convolutional Neural Networks and Transfer Learning. Bioengineering (Basel) 2023; 10:1419. [PMID: 38136010 PMCID: PMC10740646 DOI: 10.3390/bioengineering10121419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/07/2023] [Accepted: 12/12/2023] [Indexed: 12/24/2023] Open
Abstract
BACKGROUND Breast cancer is arguably one of the leading causes of death among women around the world. The automation of the early detection process and classification of breast masses has been a prominent focus for researchers in the past decade. The utilization of ultrasound imaging is prevalent in the diagnostic evaluation of breast cancer, with its predictive accuracy being dependent on the expertise of the specialist. Therefore, there is an urgent need to create fast and reliable ultrasound image detection algorithms to address this issue. METHODS This paper aims to compare the efficiency of six state-of-the-art, fine-tuned deep learning models that can classify breast tissue from ultrasound images into three classes: benign, malignant, and normal, using transfer learning. Additionally, the architecture of a custom model is introduced and trained from the ground up on a public dataset containing 780 images, which was further augmented to 3900 and 7800 images, respectively. What is more, the custom model is further validated on another private dataset containing 163 ultrasound images divided into two classes: benign and malignant. The pre-trained architectures used in this work are ResNet-50, Inception-V3, Inception-ResNet-V2, MobileNet-V2, VGG-16, and DenseNet-121. The performance evaluation metrics that are used in this study are as follows: Precision, Recall, F1-Score and Specificity. RESULTS The experimental results show that the models trained on the augmented dataset with 7800 images obtained the best performance on the test set, having 94.95 ± 0.64%, 97.69 ± 0.52%, 97.69 ± 0.13%, 97.77 ± 0.29%, 95.07 ± 0.41%, 98.11 ± 0.10%, and 96.75 ± 0.26% accuracy for the ResNet-50, MobileNet-V2, InceptionResNet-V2, VGG-16, Inception-V3, DenseNet-121, and our model, respectively. CONCLUSION Our proposed model obtains competitive results, outperforming some state-of-the-art models in terms of accuracy and training time.
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Affiliation(s)
- Alexandru Ciobotaru
- Department of Automation, Faculty of Automation and Computer Science, Technical University of Cluj-Napoca, 400114 Cluj-Napoca, Romania; (A.C.); (D.I.G.)
| | - Maria Aurora Bota
- Department of Advanced Computing Sciences, Faculty of Sciences and Engineering, Maastricht University, 6229 EN Maastricht, The Netherlands;
| | - Dan Ioan Goța
- Department of Automation, Faculty of Automation and Computer Science, Technical University of Cluj-Napoca, 400114 Cluj-Napoca, Romania; (A.C.); (D.I.G.)
| | - Liviu Cristian Miclea
- Department of Automation, Faculty of Automation and Computer Science, Technical University of Cluj-Napoca, 400114 Cluj-Napoca, Romania; (A.C.); (D.I.G.)
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Hatami M, Kouchak M, Kheirollah A, Khorsandi L, Rashidi M. Quercetin-loaded solid lipid nanoparticles exhibit antitumor activity and suppress the proliferation of triple-negative MDA-MB 231 breast cancer cells: implications for invasive breast cancer treatment. Mol Biol Rep 2023; 50:9417-9430. [PMID: 37831347 DOI: 10.1007/s11033-023-08848-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Accepted: 09/26/2023] [Indexed: 10/14/2023]
Abstract
BACKGROUND Quercetin (QC) is a naturally occurring flavonoid found in abundance in fruits and vegetables. Its anti-cancer and anti-inflammatory properties have been previously demonstrated, but its low bioavailability hampers its clinical use. Triple-negative breast cancer is a subtype of breast cancer with a poor response to chemotherapy. This study investigates the anti-cancer effects of quercetin-solid lipid nanoparticles (QC-SLN) on the triple-negative breast cancer cell line MDA-MB231. MATERIALS AND METHODS MCF-7 and MDA-MB231 cells were treated with 18.9 µM of QC and QC-SLN for 48 h. Cell viability, apoptosis, colony formation assay, and the anti-angiogenic effects of the treatment were evaluated. RESULTS QC-SLN displayed optimal properties (particle size of 154 nm, zeta potential of -27.7 mV, encapsulation efficiency of 99.6%, and drug loading of 1.81%) and exhibited sustained release of QC over 72 h. Compared to the QC group, the QC-SLN group showed a significant decrease in cell viability, colony formation, angiogenesis, and a substantial increase in apoptosis through the modulation of Bax and Bcl-2 at both gene and protein levels. The augmentation in the proportion of cleaved-to-pro caspases 3 and 9, as well as poly (ADP-ribose) polymerase (PARP), under the influence of QC-SLN, was conspicuously observed in both cancer cell lines. CONCLUSIONS This study showcases quercetin-solid lipid nanoparticles (QC-SLN) as a promising therapy for triple-negative breast cancer. The optimized QC-SLN formulation improved physicochemical properties and sustained quercetin release, resulting in reduced cell viability, colony formation, angiogenesis, and increased apoptosis in the MDA-MB231 cell line. These effects were driven by modulating Bax and Bcl-2 expression, activating caspases 3 and 9, and poly (ADP-ribose) polymerase (PARP). Further in vivo studies are needed to confirm QC-SLN's efficacy and safety.
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Affiliation(s)
- Mahdi Hatami
- Cellular and Molecular Research Center, Medical Basic Sciences Research Institution, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
- Department of Clinical Biochemistry, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Maryam Kouchak
- Nanotechnology Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
- Department of Pharmaceutics, Faculty of Pharmacy, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Alireza Kheirollah
- Department of Clinical Biochemistry, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Layasadat Khorsandi
- Cellular and Molecular Research Center, Medical Basic Sciences Research Institution, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Mojtaba Rashidi
- Cellular and Molecular Research Center, Medical Basic Sciences Research Institution, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
- Department of Clinical Biochemistry, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
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Yogarajan G, Alsubaie N, Rajasekaran G, Revathi T, Alqahtani MS, Abbas M, Alshahrani MM, Soufiene BO. EEG-based epileptic seizure detection using binary dragonfly algorithm and deep neural network. Sci Rep 2023; 13:17710. [PMID: 37853025 PMCID: PMC10584945 DOI: 10.1038/s41598-023-44318-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 10/06/2023] [Indexed: 10/20/2023] Open
Abstract
Electroencephalogram (EEG) is one of the most common methods used for seizure detection as it records the electrical activity of the brain. Symmetry and asymmetry of EEG signals can be used as indicators of epileptic seizures. Normally, EEG signals are symmetrical in nature, with similar patterns on both sides of the brain. However, during a seizure, there may be a sudden increase in the electrical activity in one hemisphere of the brain, causing asymmetry in the EEG signal. In patients with epilepsy, interictal EEG may show asymmetric spikes or sharp waves, indicating the presence of epileptic activity. Therefore, the detection of symmetry/asymmetry in EEG signals can be used as a useful tool in the diagnosis and management of epilepsy. However, it should be noted that EEG findings should always be interpreted in conjunction with the patient's clinical history and other diagnostic tests. In this paper, we propose an EEG-based improved automatic seizure detection system using a Deep neural network (DNN) and Binary dragonfly algorithm (BDFA). The DNN model learns the characteristics of the EEG signals through nine different statistical and Hjorth parameters extracted from various levels of decomposed signals obtained by using the Stationary Wavelet Transform. Next, the extracted features were reduced using the BDFA which helps to train DNN faster and improve its performance. The results show that the extracted features help to differentiate the normal, interictal, and ictal signals effectively with 100% accuracy, sensitivity, specificity, and F1 score with a 13% selected feature subset when compared to the existing approaches.
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Affiliation(s)
- G Yogarajan
- Department of Information Technology, Mepco Schlenk Engineering College, Sivakasi, Tamil Nadu, 626005, India
| | - Najah Alsubaie
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University (PNU), P.O. Box 84428, 11671, Riyadh, Saudi Arabia
| | - G Rajasekaran
- Department of Information Technology, Mepco Schlenk Engineering College, Sivakasi, Tamil Nadu, 626005, India
| | - T Revathi
- Department of Information Technology, Mepco Schlenk Engineering College, Sivakasi, Tamil Nadu, 626005, India
| | - Mohammed S Alqahtani
- Radiological Sciences Department, College of Applied Medical Sciences, King Khalid University, 61421, Abha, Saudi Arabia
- BioImaging Unit, Space Research Centre, University of Leicester, Michael Atiyah Building, Leicester, LE1 7RH, UK
| | - Mohamed Abbas
- Electrical Engineering Department, College of Engineering, King Khalid University, 61421, Abha, Saudi Arabia
| | | | - Ben Othman Soufiene
- PRINCE Laboratory Research, ISITcom, Hammam Sousse, University of Sousse, Sousse, Tunisia.
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da Silva HEC, Santos GNM, Leite AF, Mesquita CRM, Figueiredo PTDS, Stefani CM, de Melo NS. The use of artificial intelligence tools in cancer detection compared to the traditional diagnostic imaging methods: An overview of the systematic reviews. PLoS One 2023; 18:e0292063. [PMID: 37796946 PMCID: PMC10553229 DOI: 10.1371/journal.pone.0292063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 09/12/2023] [Indexed: 10/07/2023] Open
Abstract
BACKGROUND AND PURPOSE In comparison to conventional medical imaging diagnostic modalities, the aim of this overview article is to analyze the accuracy of the application of Artificial Intelligence (AI) techniques in the identification and diagnosis of malignant tumors in adult patients. DATA SOURCES The acronym PIRDs was used and a comprehensive literature search was conducted on PubMed, Cochrane, Scopus, Web of Science, LILACS, Embase, Scielo, EBSCOhost, and grey literature through Proquest, Google Scholar, and JSTOR for systematic reviews of AI as a diagnostic model and/or detection tool for any cancer type in adult patients, compared to the traditional diagnostic radiographic imaging model. There were no limits on publishing status, publication time, or language. For study selection and risk of bias evaluation, pairs of reviewers worked separately. RESULTS In total, 382 records were retrieved in the databases, 364 after removing duplicates, 32 satisfied the full-text reading criterion, and 09 papers were considered for qualitative synthesis. Although there was heterogeneity in terms of methodological aspects, patient differences, and techniques used, the studies found that several AI approaches are promising in terms of specificity, sensitivity, and diagnostic accuracy in the detection and diagnosis of malignant tumors. When compared to other machine learning algorithms, the Super Vector Machine method performed better in cancer detection and diagnosis. Computer-assisted detection (CAD) has shown promising in terms of aiding cancer detection, when compared to the traditional method of diagnosis. CONCLUSIONS The detection and diagnosis of malignant tumors with the help of AI seems to be feasible and accurate with the use of different technologies, such as CAD systems, deep and machine learning algorithms and radiomic analysis when compared with the traditional model, although these technologies are not capable of to replace the professional radiologist in the analysis of medical images. Although there are limitations regarding the generalization for all types of cancer, these AI tools might aid professionals, serving as an auxiliary and teaching tool, especially for less trained professionals. Therefore, further longitudinal studies with a longer follow-up duration are required for a better understanding of the clinical application of these artificial intelligence systems. TRIAL REGISTRATION Systematic review registration. Prospero registration number: CRD42022307403.
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Affiliation(s)
| | | | - André Ferreira Leite
- Faculty of Health Science, Dentistry of Department, Brasilia University, Brasilia, Brazil
| | | | | | - Cristine Miron Stefani
- Faculty of Health Science, Dentistry of Department, Brasilia University, Brasilia, Brazil
| | - Nilce Santos de Melo
- Faculty of Health Science, Dentistry of Department, Brasilia University, Brasilia, Brazil
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Khalid A, Mehmood A, Alabrah A, Alkhamees BF, Amin F, AlSalman H, Choi GS. Breast Cancer Detection and Prevention Using Machine Learning. Diagnostics (Basel) 2023; 13:3113. [PMID: 37835856 PMCID: PMC10572157 DOI: 10.3390/diagnostics13193113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 09/25/2023] [Accepted: 09/28/2023] [Indexed: 10/15/2023] Open
Abstract
Breast cancer is a common cause of female mortality in developing countries. Early detection and treatment are crucial for successful outcomes. Breast cancer develops from breast cells and is considered a leading cause of death in women. This disease is classified into two subtypes: invasive ductal carcinoma (IDC) and ductal carcinoma in situ (DCIS). The advancements in artificial intelligence (AI) and machine learning (ML) techniques have made it possible to develop more accurate and reliable models for diagnosing and treating this disease. From the literature, it is evident that the incorporation of MRI and convolutional neural networks (CNNs) is helpful in breast cancer detection and prevention. In addition, the detection strategies have shown promise in identifying cancerous cells. The CNN Improvements for Breast Cancer Classification (CNNI-BCC) model helps doctors spot breast cancer using a trained deep learning neural network system to categorize breast cancer subtypes. However, they require significant computing power for imaging methods and preprocessing. Therefore, in this research, we proposed an efficient deep learning model that is capable of recognizing breast cancer in computerized mammograms of varying densities. Our research relied on three distinct modules for feature selection: the removal of low-variance features, univariate feature selection, and recursive feature elimination. The craniocaudally and medial-lateral views of mammograms are incorporated. We tested it with a large dataset of 3002 merged pictures gathered from 1501 individuals who had digital mammography performed between February 2007 and May 2015. In this paper, we applied six different categorization models for the diagnosis of breast cancer, including the random forest (RF), decision tree (DT), k-nearest neighbors (KNN), logistic regression (LR), support vector classifier (SVC), and linear support vector classifier (linear SVC). The simulation results prove that our proposed model is highly efficient, as it requires less computational power and is highly accurate.
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Affiliation(s)
- Arslan Khalid
- Faculty of Computing, Islamia University of Bahawalpur, Bahawalpur 63100, Punjab, Pakistan; (A.K.); (A.M.)
| | - Arif Mehmood
- Faculty of Computing, Islamia University of Bahawalpur, Bahawalpur 63100, Punjab, Pakistan; (A.K.); (A.M.)
| | - Amerah Alabrah
- Department of Information Systems, College of Computer and Information Science, King Saud University, Riyadh 11543, Saudi Arabia;
| | - Bader Fahad Alkhamees
- Department of Information Systems, College of Computer and Information Science, King Saud University, Riyadh 11543, Saudi Arabia;
| | - Farhan Amin
- Department of Information and Communication Engineering, Yeungnam University, Gyeongsan 38541, Republic of Korea;
| | - Hussain AlSalman
- Department of Computer Science, College of Computer and Information Sciences, King Saud University, Riyadh 11543, Saudi Arabia;
| | - Gyu Sang Choi
- Department of Information and Communication Engineering, Yeungnam University, Gyeongsan 38541, Republic of Korea;
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Li W, Yang D, Ma C, Liu L. Identifying novel disease categories through divergence optimization: An approach to prevent misdiagnosis in medical imaging. Comput Biol Med 2023; 165:107403. [PMID: 37688992 DOI: 10.1016/j.compbiomed.2023.107403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 08/09/2023] [Accepted: 08/26/2023] [Indexed: 09/11/2023]
Abstract
Given the significant changes in human lifestyle, the incidence of colon cancer has rapidly increased. The diagnostic process can often be complicated due to symptom similarities between colon cancer and other colon-related diseases. In an effort to minimize misdiagnosis, deep learning-based approaches for colon cancer diagnosis have notably progressed within the field of clinical medicine, offering more precise detection and improved patient outcomes. Despite these advancements, practical application of these techniques continues to encounter two major challenges: 1) due to the need for expert annotation, only a limited number of labels are utilized for diagnosis; and 2) the existence of diverse disease types can lead to misdiagnosis when the model encounters unfamiliar disease categories. To overcome these hurdles, we present a method incorporating Universal Domain Adaptation (UniDA). By optimizing the divergence of samples in the source domain, our method detects noise. Furthermore, to identify categories that are not present in the source domain, we optimize the divergence of unlabeled samples in the target domain. Experimental validation on two gastrointestinal datasets demonstrates that our method surpasses current state-of-the-art domain adaptation techniques in identifying unknown disease classes. It is worth noting that our proposed method is the first work of medical image diagnosis aimed at the identification of unknown categories of diseases.
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Affiliation(s)
- Wencai Li
- Department of General Surgery, The Second Affiliated Hospital of Shanghai University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Daqing Yang
- Department of General Surgery, The Second Affiliated Hospital of Shanghai University (Wenzhou Central Hospital), Wenzhou, Zhejiang, 325000, China.
| | - Chao Ma
- School of Digital Media, Shenzhen Institute of Information Technology, Shenzhen, 518172, China.
| | - Lei Liu
- College of Computer Science, Sichuan University, Chengdu, Sichuan, 610065, China.
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You C, Shen Y, Sun S, Zhou J, Li J, Su G, Michalopoulou E, Peng W, Gu Y, Guo W, Cao H. Artificial intelligence in breast imaging: Current situation and clinical challenges. EXPLORATION (BEIJING, CHINA) 2023; 3:20230007. [PMID: 37933287 PMCID: PMC10582610 DOI: 10.1002/exp.20230007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 04/30/2023] [Indexed: 11/08/2023]
Abstract
Breast cancer ranks among the most prevalent malignant tumours and is the primary contributor to cancer-related deaths in women. Breast imaging is essential for screening, diagnosis, and therapeutic surveillance. With the increasing demand for precision medicine, the heterogeneous nature of breast cancer makes it necessary to deeply mine and rationally utilize the tremendous amount of breast imaging information. With the rapid advancement of computer science, artificial intelligence (AI) has been noted to have great advantages in processing and mining of image information. Therefore, a growing number of scholars have started to focus on and research the utility of AI in breast imaging. Here, an overview of breast imaging databases and recent advances in AI research are provided, the challenges and problems in this field are discussed, and then constructive advice is further provided for ongoing scientific developments from the perspective of the National Natural Science Foundation of China.
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Affiliation(s)
- Chao You
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Yiyuan Shen
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Shiyun Sun
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Jiayin Zhou
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Jiawei Li
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Guanhua Su
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
- Department of Breast SurgeryKey Laboratory of Breast Cancer in ShanghaiFudan University Shanghai Cancer CenterShanghaiChina
| | | | - Weijun Peng
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Yajia Gu
- Department of RadiologyFudan University Shanghai Cancer CenterShanghaiChina
- Department of OncologyShanghai Medical CollegeFudan UniversityShanghaiChina
| | - Weisheng Guo
- Department of Minimally Invasive Interventional RadiologyKey Laboratory of Molecular Target and Clinical PharmacologySchool of Pharmaceutical Sciences and The Second Affiliated HospitalGuangzhou Medical UniversityGuangzhouChina
| | - Heqi Cao
- Department of Health SciencesNational Natural Science Foundation of ChinaBeijingChina
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Mahmoud A, El-Sharkawy YH. Delineation and detection of breast cancer using novel label-free fluorescence. BMC Med Imaging 2023; 23:132. [PMID: 37716994 PMCID: PMC10505331 DOI: 10.1186/s12880-023-01095-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 09/04/2023] [Indexed: 09/18/2023] Open
Abstract
BACKGROUND Accurate diagnosis of breast cancer (BC) plays a crucial role in clinical pathology analysis and ensuring precise surgical margins to prevent recurrence. METHODS Laser-induced fluorescence (LIF) technology offers high sensitivity to tissue biochemistry, making it a potential tool for noninvasive BC identification. In this study, we utilized hyperspectral (HS) imaging data of stimulated BC specimens to detect malignancies based on altered fluorescence characteristics compared to normal tissue. Initially, we employed a HS camera and broadband spectrum light to assess the absorbance of BC samples. Notably, significant absorbance differences were observed in the 440-460 nm wavelength range. Subsequently, we developed a specialized LIF system for BC detection, utilizing a low-power blue laser source at 450 nm wavelength for ten BC samples. RESULTS Our findings revealed that the fluorescence distribution of breast specimens, which carries molecular-scale structural information, serves as an effective marker for identifying breast tumors. Specifically, the emission at 561 nm exhibited the greatest variation in fluorescence signal intensity for both tumor and normal tissue, serving as an optical predictive biomarker. To enhance BC identification, we propose an advanced image classification technique that combines image segmentation using contour mapping and K-means clustering (K-mc, K = 8) for HS emission image data analysis. CONCLUSIONS This exploratory work presents a potential avenue for improving "in-vivo" disease characterization using optical technology, specifically our LIF technique combined with the advanced K-mc approach, facilitating early tumor diagnosis in BC.
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Affiliation(s)
- Alaaeldin Mahmoud
- Optoelectronics and automatic control systems department, Military Technical College, Kobry El-Kobba, Cairo, Egypt.
| | - Yasser H El-Sharkawy
- Optoelectronics and automatic control systems department, Military Technical College, Kobry El-Kobba, Cairo, Egypt
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Laghari AA, Sun Y, Alhussein M, Aurangzeb K, Anwar MS, Rashid M. Deep residual-dense network based on bidirectional recurrent neural network for atrial fibrillation detection. Sci Rep 2023; 13:15109. [PMID: 37704659 PMCID: PMC10499947 DOI: 10.1038/s41598-023-40343-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 08/09/2023] [Indexed: 09/15/2023] Open
Abstract
Atrial fibrillation easily leads to stroke, cerebral infarction and other complications, which will seriously harm the life and health of patients. Traditional deep learning methods have weak anti-interference and generalization ability. Therefore, we propose a new-fashioned deep residual-dense network via bidirectional recurrent neural network (RNN) model for atrial fibrillation detection. The combination of one-dimensional dense residual network and bidirectional RNN for atrial fibrillation detection simplifies the tedious feature extraction steps, and constructs the end-to-end neural network to achieve atrial fibrillation detection through data feature learning. Meanwhile, the attention mechanism is utilized to fuse the different features and extract the high-value information. The accuracy of the experimental results is 97.72%, the sensitivity and specificity are 93.09% and 98.71%, respectively compared with other methods.
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Affiliation(s)
- Asif Ali Laghari
- Software College, Shenyang Normal University, Shenyang, 110034, China
| | - Yanqiu Sun
- Liaoning University of Traditional Chinese Medicine, Shenyang, China.
| | - Musaed Alhussein
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, P.O. Box 51178, Riyadh, 11543, Kingdom of Saudi Arabia
| | - Khursheed Aurangzeb
- Department of Computer Engineering, College of Computer and Information Sciences, King Saud University, P.O. Box 51178, Riyadh, 11543, Kingdom of Saudi Arabia
| | | | - Mamoon Rashid
- Department of Computer Engineering, Faculty of Science and Technology, Vishwakarma University, Pune, 411048, India
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Rai HM. Cancer detection and segmentation using machine learning and deep learning techniques: a review. MULTIMEDIA TOOLS AND APPLICATIONS 2023. [DOI: 10.1007/s11042-023-16520-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 05/12/2023] [Accepted: 08/13/2023] [Indexed: 09/16/2023]
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Pu F, Hu Z, Yang Y, Xia P, Xia Z. Editorial: Diagnosis and treatment of bone metastases. Front Oncol 2023; 13:1247231. [PMID: 37655109 PMCID: PMC10466129 DOI: 10.3389/fonc.2023.1247231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Accepted: 07/21/2023] [Indexed: 09/02/2023] Open
Affiliation(s)
- Feifei Pu
- Department of Orthopedics, Traditional Chinese and Western Medicine Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China
- Department of Orthopedics, Wuhan No.1 Hospital, Wuhan, China
| | - Zuowei Hu
- Department of Oncology, Traditional Chinese and Western Medicine Hospital of Wuhan, Wuhan, China
| | - Yanping Yang
- Spine Institute, Shanghai University of Traditional Chinese Medicine, Shanghai, China
| | - Ping Xia
- Department of Orthopedics, Wuhan Fourth Hospital (Puai Hospital), Wuhan, China
| | - Zhidao Xia
- Institute of Life Science, Swansea University Medical School, Swansea, United Kingdom
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Alhussan AA, Abdelhamid AA, Towfek SK, Ibrahim A, Abualigah L, Khodadadi N, Khafaga DS, Al-Otaibi S, Ahmed AE. Classification of Breast Cancer Using Transfer Learning and Advanced Al-Biruni Earth Radius Optimization. Biomimetics (Basel) 2023; 8:270. [PMID: 37504158 PMCID: PMC10377265 DOI: 10.3390/biomimetics8030270] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 06/21/2023] [Accepted: 06/24/2023] [Indexed: 07/29/2023] Open
Abstract
Breast cancer is one of the most common cancers in women, with an estimated 287,850 new cases identified in 2022. There were 43,250 female deaths attributed to this malignancy. The high death rate associated with this type of cancer can be reduced with early detection. Nonetheless, a skilled professional is always necessary to manually diagnose this malignancy from mammography images. Many researchers have proposed several approaches based on artificial intelligence. However, they still face several obstacles, such as overlapping cancerous and noncancerous regions, extracting irrelevant features, and inadequate training models. In this paper, we developed a novel computationally automated biological mechanism for categorizing breast cancer. Using a new optimization approach based on the Advanced Al-Biruni Earth Radius (ABER) optimization algorithm, a boosting to the classification of breast cancer cases is realized. The stages of the proposed framework include data augmentation, feature extraction using AlexNet based on transfer learning, and optimized classification using a convolutional neural network (CNN). Using transfer learning and optimized CNN for classification improved the accuracy when the results are compared to recent approaches. Two publicly available datasets are utilized to evaluate the proposed framework, and the average classification accuracy is 97.95%. To ensure the statistical significance and difference between the proposed methodology, additional tests are conducted, such as analysis of variance (ANOVA) and Wilcoxon, in addition to evaluating various statistical analysis metrics. The results of these tests emphasized the effectiveness and statistical difference of the proposed methodology compared to current methods.
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Affiliation(s)
- Amel Ali Alhussan
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Abdelaziz A Abdelhamid
- Department of Computer Science, College of Computing and Information Technology, Shaqra University, Shaqra 11961, Saudi Arabia
- Department of Computer Science, Faculty of Computer and Information Sciences, Ain Shams University, Cairo 11566, Egypt
| | - S K Towfek
- Computer Science and Intelligent Systems Research Center, Blacksburg, VA 24060, USA
- Department of Communications and Electronics, Delta Higher Institute of Engineering and Technology, Mansoura 35111, Egypt
| | - Abdelhameed Ibrahim
- Computer Engineering and Control Systems Department, Faculty of Engineering, Mansoura University, Mansoura 35516, Egypt
| | - Laith Abualigah
- Computer Science Department, Prince Hussein Bin Abdullah Faculty for Information Technology, Al al-Bayt University, Mafraq 25113, Jordan
- Hourani Center for Applied Scientific Research, Al-Ahliyya Amman University, Amman 19328, Jordan
- MEU Research Unit, Middle East University, Amman 11831, Jordan
- School of Computer Sciences, Universiti Sains Malaysia, Pulau Pinang 11800, Malaysia
| | - Nima Khodadadi
- Department of Civil and Architectural Engineering, University of Miami, Coral Gables, FL 33146, USA
| | - Doaa Sami Khafaga
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Shaha Al-Otaibi
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Ayman Em Ahmed
- Faculty of Engineering, King Salman International University, El-Tor 8701301, Egypt
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46
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Jabeen K, Khan MA, Balili J, Alhaisoni M, Almujally NA, Alrashidi H, Tariq U, Cha JH. BC 2NetRF: Breast Cancer Classification from Mammogram Images Using Enhanced Deep Learning Features and Equilibrium-Jaya Controlled Regula Falsi-Based Features Selection. Diagnostics (Basel) 2023; 13:1238. [PMID: 37046456 PMCID: PMC10093018 DOI: 10.3390/diagnostics13071238] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/13/2023] [Accepted: 03/23/2023] [Indexed: 03/29/2023] Open
Abstract
One of the most frequent cancers in women is breast cancer, and in the year 2022, approximately 287,850 new cases have been diagnosed. From them, 43,250 women died from this cancer. An early diagnosis of this cancer can help to overcome the mortality rate. However, the manual diagnosis of this cancer using mammogram images is not an easy process and always requires an expert person. Several AI-based techniques have been suggested in the literature. However, still, they are facing several challenges, such as similarities between cancer and non-cancer regions, irrelevant feature extraction, and weak training models. In this work, we proposed a new automated computerized framework for breast cancer classification. The proposed framework improves the contrast using a novel enhancement technique called haze-reduced local-global. The enhanced images are later employed for the dataset augmentation. This step aimed at increasing the diversity of the dataset and improving the training capability of the selected deep learning model. After that, a pre-trained model named EfficientNet-b0 was employed and fine-tuned to add a few new layers. The fine-tuned model was trained separately on original and enhanced images using deep transfer learning concepts with static hyperparameters' initialization. Deep features were extracted from the average pooling layer in the next step and fused using a new serial-based approach. The fused features were later optimized using a feature selection algorithm known as Equilibrium-Jaya controlled Regula Falsi. The Regula Falsi was employed as a termination function in this algorithm. The selected features were finally classified using several machine learning classifiers. The experimental process was conducted on two publicly available datasets-CBIS-DDSM and INbreast. For these datasets, the achieved average accuracy is 95.4% and 99.7%. A comparison with state-of-the-art (SOTA) technology shows that the obtained proposed framework improved the accuracy. Moreover, the confidence interval-based analysis shows consistent results of the proposed framework.
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Affiliation(s)
- Kiran Jabeen
- Department of Computer Science, HITEC University, Taxila 47080, Pakistan
| | | | - Jamel Balili
- College of Computer Science, King Khalid University, Abha 61413, Saudi Arabia
- Higher Institute of Applied Science and Technology of Sousse (ISSATS), Cité Taffala (Ibn Khaldoun) 4003 Sousse, University of Souse, Sousse 4000, Tunisia
| | - Majed Alhaisoni
- College of Computer Science and Engineering, University of Ha'il, Ha'il 81451, Saudi Arabia
| | - Nouf Abdullah Almujally
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Huda Alrashidi
- Faculty of Information Technology and Computing, Arab Open University, Ardiya 92400, Kuwait
| | - Usman Tariq
- Department of Management, CoBA, Prince Sattam bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia
| | - Jae-Hyuk Cha
- Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea
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47
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Guleria HV, Luqmani AM, Kothari HD, Phukan P, Patil S, Pareek P, Kotecha K, Abraham A, Gabralla LA. Enhancing the Breast Histopathology Image Analysis for Cancer Detection Using Variational Autoencoder. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:ijerph20054244. [PMID: 36901255 PMCID: PMC10002012 DOI: 10.3390/ijerph20054244] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Revised: 02/08/2023] [Accepted: 02/09/2023] [Indexed: 06/12/2023]
Abstract
A breast tissue biopsy is performed to identify the nature of a tumour, as it can be either cancerous or benign. The first implementations involved the use of machine learning algorithms. Random Forest and Support Vector Machine (SVM) were used to classify the input histopathological images into whether they were cancerous or non-cancerous. The implementations continued to provide promising results, and then Artificial Neural Networks (ANNs) were applied for this purpose. We propose an approach for reconstructing the images using a Variational Autoencoder (VAE) and the Denoising Variational Autoencoder (DVAE) and then use a Convolutional Neural Network (CNN) model. Afterwards, we predicted whether the input image was cancerous or non-cancerous. Our implementation provides predictions with 73% accuracy, which is greater than the results produced by our custom-built CNN on our dataset. The proposed architecture will prove to be a new field of research and a new area to be explored in the field of computer vision using CNN and Generative Modelling since it incorporates reconstructions of the original input images and provides predictions on them thereafter.
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Affiliation(s)
- Harsh Vardhan Guleria
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Ali Mazhar Luqmani
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Harsh Devendra Kothari
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Priyanshu Phukan
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Shruti Patil
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Preksha Pareek
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Ketan Kotecha
- Symbiosis Institute of Technology, Symbiosis International University, Pune 412115, India
| | - Ajith Abraham
- Faculty of Computing and Data Sciences, FLAME University, Lavale, Pune 412115, India
| | - Lubna Abdelkareim Gabralla
- Department of Computer Science and Information Technology, College of Applied, Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia
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48
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Kuo CFJ, Chen HY, Barman J, Ko KH, Hsu HH. Complete, Fully Automatic Detection and Classification of Benign and Malignant Breast Tumors Based on CT Images Using Artificial Intelligent and Image Processing. J Clin Med 2023; 12:1582. [PMID: 36836118 PMCID: PMC9960342 DOI: 10.3390/jcm12041582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Revised: 12/09/2022] [Accepted: 12/19/2022] [Indexed: 02/19/2023] Open
Abstract
Breast cancer is the most common type of cancer in women, and early detection is important to significantly reduce its mortality rate. This study introduces a detection and diagnosis system that automatically detects and classifies breast tumors in CT scan images. First, the contours of the chest wall are extracted from computed chest tomography images, and two-dimensional image characteristics and three-dimensional image features, together with the application of active contours without edge and geodesic active contours methods, are used to detect, locate, and circle the tumor. Then, the computer-assisted diagnostic system extracts features, quantifying and classifying benign and malignant breast tumors using a greedy algorithm and a support vector machine. The study used 174 breast tumors for experiment and training and performed cross-validation 10 times (k-fold cross-validation) to evaluate performance of the system. The accuracy, sensitivity, specificity, and positive and negative predictive values of the system were 99.43%, 98.82%, 100%, 100%, and 98.89% respectively. This system supports the rapid extraction and classification of breast tumors as either benign or malignant, helping physicians to improve clinical diagnosis.
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Affiliation(s)
- Chung-Feng Jeffrey Kuo
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Hsuan-Yu Chen
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Jagadish Barman
- Department of Materials Science and Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Kai-Hsiung Ko
- Department of Radiology, Tri-Service General Hospital, National Defense Medical Center, Taipei 114, Taiwan
| | - Hsian-He Hsu
- Department of Radiology, Tri-Service General Hospital, National Defense Medical Center, Taipei 114, Taiwan
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49
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Yusoff M, Haryanto T, Suhartanto H, Mustafa WA, Zain JM, Kusmardi K. Accuracy Analysis of Deep Learning Methods in Breast Cancer Classification: A Structured Review. Diagnostics (Basel) 2023; 13:diagnostics13040683. [PMID: 36832171 PMCID: PMC9955565 DOI: 10.3390/diagnostics13040683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 02/06/2023] [Accepted: 02/07/2023] [Indexed: 02/17/2023] Open
Abstract
Breast cancer is diagnosed using histopathological imaging. This task is extremely time-consuming due to high image complexity and volume. However, it is important to facilitate the early detection of breast cancer for medical intervention. Deep learning (DL) has become popular in medical imaging solutions and has demonstrated various levels of performance in diagnosing cancerous images. Nonetheless, achieving high precision while minimizing overfitting remains a significant challenge for classification solutions. The handling of imbalanced data and incorrect labeling is a further concern. Additional methods, such as pre-processing, ensemble, and normalization techniques, have been established to enhance image characteristics. These methods could influence classification solutions and be used to overcome overfitting and data balancing issues. Hence, developing a more sophisticated DL variant could improve classification accuracy while reducing overfitting. Technological advancements in DL have fueled automated breast cancer diagnosis growth in recent years. This paper reviewed studies on the capability of DL to classify histopathological breast cancer images, as the objective of this study was to systematically review and analyze current research on the classification of histopathological images. Additionally, literature from the Scopus and Web of Science (WOS) indexes was reviewed. This study assessed recent approaches for histopathological breast cancer image classification in DL applications for papers published up until November 2022. The findings of this study suggest that DL methods, especially convolution neural networks and their hybrids, are the most cutting-edge approaches currently in use. To find a new technique, it is necessary first to survey the landscape of existing DL approaches and their hybrid methods to conduct comparisons and case studies.
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Affiliation(s)
- Marina Yusoff
- Institute for Big Data Analytics and Artificial Intelligence (IBDAAI), Kompleks Al-Khawarizmi, Universiti Teknologi MARA (UiTM), Shah Alam 40450, Selangor, Malaysia
- College of Computing, Informatic and Media, Kompleks Al-Khawarizmi, Universiti Teknologi MARA (UiTM), Shah Alam 40450, Selangor, Malaysia
- Correspondence: (M.Y.); (W.A.M.)
| | - Toto Haryanto
- Department of Computer Science, IPB University, Bogor 16680, Indonesia
| | - Heru Suhartanto
- Faculty of Computer Science, Universitas Indonesia, Depok 16424, Indonesia
| | - Wan Azani Mustafa
- Faculty of Electrical Engineering Technology, Universiti Malaysia Perlis, UniCITI Alam Campus, Sungai Chuchuh, Padang Besar 02100, Perlis, Malaysia
- Correspondence: (M.Y.); (W.A.M.)
| | - Jasni Mohamad Zain
- Institute for Big Data Analytics and Artificial Intelligence (IBDAAI), Kompleks Al-Khawarizmi, Universiti Teknologi MARA (UiTM), Shah Alam 40450, Selangor, Malaysia
- College of Computing, Informatic and Media, Kompleks Al-Khawarizmi, Universiti Teknologi MARA (UiTM), Shah Alam 40450, Selangor, Malaysia
| | - Kusmardi Kusmardi
- Department of Anatomical Pathology, Faculty of Medicine, Universitas Indonesia/Cipto Mangunkusumo Hospital, Jakarta 10430, Indonesia
- Human Cancer Research Cluster, Indonesia Medical Education and Research Institute, Universitas Indonesia, Jakarta 10430, Indonesia
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50
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Wu R, Luo J, Wan H, Zhang H, Yuan Y, Hu H, Feng J, Wen J, Wang Y, Li J, Liang Q, Gan F, Zhang G. Evaluation of machine learning algorithms for the prognosis of breast cancer from the Surveillance, Epidemiology, and End Results database. PLoS One 2023; 18:e0280340. [PMID: 36701415 PMCID: PMC9879508 DOI: 10.1371/journal.pone.0280340] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 12/26/2022] [Indexed: 01/27/2023] Open
Abstract
INTRODUCTION Many researchers used machine learning (ML) to predict the prognosis of breast cancer (BC) patients and noticed that the ML model had good individualized prediction performance. OBJECTIVE The cohort study was intended to establish a reliable data analysis model by comparing the performance of 10 common ML algorithms and the the traditional American Joint Committee on Cancer (AJCC) stage, and used this model in Web application development to provide a good individualized prediction for others. METHODS This study included 63145 BC patients from the Surveillance, Epidemiology, and End Results database. RESULTS Through the performance of the 10 ML algorithms and 7th AJCC stage in the optimal test set, we found that in terms of 5-year overall survival, multivariate adaptive regression splines (MARS) had the highest area under the curve (AUC) value (0.831) and F1-score (0.608), and both sensitivity (0.737) and specificity (0.772) were relatively high. Besides, MARS showed a highest AUC value (0.831, 95%confidence interval: 0.820-0.842) in comparison to the other ML algorithms and 7th AJCC stage (all P < 0.05). MARS, the best performing model, was selected for web application development (https://w12251393.shinyapps.io/app2/). CONCLUSIONS The comparative study of multiple forecasting models utilizing a large data noted that MARS based model achieved a much better performance compared to other ML algorithms and 7th AJCC stage in individualized estimation of survival of BC patients, which was very likely to be the next step towards precision medicine.
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Affiliation(s)
- Ruiyang Wu
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Jing Luo
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Hangyu Wan
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Haiyan Zhang
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Yewei Yuan
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Huihua Hu
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Jinyan Feng
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Jing Wen
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Yan Wang
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Junyan Li
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Qi Liang
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Fengjiao Gan
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
| | - Gang Zhang
- Department of Breast and Thyroid Surgery, Sichuan Provincial Hospital for Women and Children (Affiliated Women and Children’s Hospital of Chengdu Medical College), Chengdu, China
- * E-mail:
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