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He Y, Zeng L, Xu Q, Wang Z, Yu H, Shen Z, Yang Z, Zhou R. Spectral CT reconstruction via low-rank representation and structure preserving regularization. Phys Med Biol 2023; 68. [PMID: 36595335 DOI: 10.1088/1361-6560/acabf9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Accepted: 12/15/2022] [Indexed: 12/23/2022]
Abstract
Objective:With the development of computed tomography (CT) imaging technology, it is possible to acquire multi-energy data by spectral CT. Being different from conventional CT, the X-ray energy spectrum of spectral CT is cut into several narrow bins which leads to the result that only a part of photon can be collected in each individual energy channel.This can severely degrade the image qualities. To address this problem, we propose a spectral CT reconstruction algorithm based on low-rank representation and structure preserving regularization in this paper.Approach:To make full use of the prior knowledge about both the inter-channel correlation and the sparsity in gradient domain of inner-channel data, this paper combines a low-rank correlation descriptor with a structure extraction operator as priori regularization terms for spectral CT reconstruction. Furthermore, a split-Bregman based iterative algorithm is developed to solve the reconstruction model. Finally, we propose a multi-channel adaptive parameters generation strategy according to CT values of each individual energy channel.Main results: Experimental results on numerical simulations and real mouse data indicate that the proposed algorithm achieves higher accuracy on both reconstruction and material decomposition than the methods based on simultaneous algebraic reconstruction technique (SART), total variation minimization (TVM), total variation with low-rank (LRTV), and spatial-spectral cube matching frame (SSCMF). Compared with SART, our algorithm improves the feature similarity (FSIM) by 40.4% on average for numerical simulation reconstruction, whereas TVM, LRTV, and SSCMF correspond to 26.1%, 28.2%, and 29.5%, respectively.Significance: We outline a multi-channel reconstruction algorithm tailored for spectral CT. The qualitative and quantitative comparisons present a significant improvement of image quality, indicating its promising potential in spectral CT imaging.
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Affiliation(s)
- Yuanwei He
- College of Mathematics and Statistics, Chongqing University, Chongqing 401331, People's Republic of China.,Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China
| | - Li Zeng
- College of Mathematics and Statistics, Chongqing University, Chongqing 401331, People's Republic of China.,Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China
| | - Qiong Xu
- Beijing Engineering Research Center of Radiographic Techniques and Equipment, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.,Jinan Laboratory of Applied Nuclear Science, Jinan 250131, People's Republic of China
| | - Zhe Wang
- Beijing Engineering Research Center of Radiographic Techniques and Equipment, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, People's Republic of China.,Jinan Laboratory of Applied Nuclear Science, Jinan 250131, People's Republic of China
| | - Haijun Yu
- Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China.,Key Lab of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China
| | - Zhaoqiang Shen
- College of Mathematics and Statistics, Chongqing University, Chongqing 401331, People's Republic of China.,Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China
| | - Zhaojun Yang
- College of Mathematics and Statistics, Chongqing University, Chongqing 401331, People's Republic of China.,Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China
| | - Rifeng Zhou
- Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China.,Key Lab of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing 400044, People's Republic of China.,State Key Laboratory of Mechanical Transmission, Chongqing University, Chongqing 400044, People's Republic of China
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Li D, Bian Z, Li S, He J, Zeng D, Ma J. Noise Characteristics Modeled Unsupervised Network for Robust CT Image Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:3849-3861. [PMID: 35939459 DOI: 10.1109/tmi.2022.3197400] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Deep learning (DL)-based methods show great potential in computed tomography (CT) imaging field. The DL-based reconstruction methods are usually evaluated on the training and testing datasets which are obtained from the same distribution, i.e., the same CT scan protocol (i.e., the region setting, kVp, mAs, etc.). In this work, we focus on analyzing the robustness of the DL-based methods against protocol-specific distribution shifts (i.e., the training and testing datasets are from different region settings, different kVp settings, or different mAs settings, respectively). The results show that the DL-based reconstruction methods are sensitive to the protocol-specific perturbations which can be attributed to the noise distribution shift between the training and testing datasets. Based on these findings, we presented a low-dose CT reconstruction method using an unsupervised strategy with the consideration of noise distribution to address the issue of protocol-specific perturbations. Specifically, unpaired sinogram data is enrolled into the network training, which represents unique information for specific imaging protocol, and a Gaussian mixture model (GMM) is introduced to characterize the noise distribution in CT images. It can be termed as GMM based unsupervised CT reconstruction network (GMM-unNet) method. Moreover, an expectation-maximization algorithm is designed to optimize the presented GMM-unNet method. Extensive experiments are performed on three datasets from different scan protocols, which demonstrate that the presented GMM-unNet method outperforms the competing methods both qualitatively and quantitatively.
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Wu W, Yu H, Liu F, Zhang J, Vardhanabhuti V, Chen J. Spectral CT reconstruction via Spectral-Image Tensor and Bidirectional Image-gradient minimization. Comput Biol Med 2022; 151:106080. [PMID: 36327881 DOI: 10.1016/j.compbiomed.2022.106080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 08/19/2022] [Accepted: 09/03/2022] [Indexed: 12/27/2022]
Abstract
It is challenging to obtain good image quality in spectral computed tomography (CT) as the photon-number for the photon-counting detectors is limited for each narrow energy bin. This results in a lower signal to noise ratio (SNR) for the projections. To handle this issue, we first formulate the weight bidirectional image gradient with L0-norm constraint of spectral CT image. Then, as a new regularizer, bidirectional image gradient with L0-norm constraint is introduced into the tensor decomposition model, generating the Spectral-Image Tensor and Bidirectional Image-gradient Minimization (SITBIM) algorithm. Finally, the split-Bregman method is employed to optimize the proposed SITBIM mathematical model. The experiments on the numerical mouse phantom and real mouse experiments are designed to validate and evaluate the SITBIM method. The results demonstrate that the SITBIM can outperform other state-of-the-art methods (including TVM, TV + LR, SSCMF and NLCTF). INDEX TERMS: -spectral CT, image reconstruction, tensor decomposition, unidirectional image gradient, image similarity.
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Affiliation(s)
- Weiwen Wu
- The School of Biomedical Engineering, Shenzhen Campus, Sun Yat-sen University, Shenzhen, Guangdong, 518107, China; The University of Hong Kong, Hong Kong, 999077, China
| | - Hengyong Yu
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA, 01854, USA
| | - Fenglin Liu
- The Key Lab of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Jianjia Zhang
- The School of Biomedical Engineering, Shenzhen Campus, Sun Yat-sen University, Shenzhen, Guangdong, 518107, China.
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Lee M, Kim H, Cho HM, Kim HJ. Ultra-Low-Dose Spectral CT Based on a Multi-level Wavelet Convolutional Neural Network. J Digit Imaging 2021; 34:1359-1375. [PMID: 34590198 DOI: 10.1007/s10278-021-00467-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 03/04/2021] [Accepted: 05/17/2021] [Indexed: 11/25/2022] Open
Abstract
Spectral computed tomography (CT) based on a photon-counting detector (PCD) is a promising technique with the potential to improve lesion detection, tissue characterization, and material decomposition. PCD-based scanners have several technical issues including operation in the step-and-scan mode and long data acquisition time. One straightforward solution to these issues is to reduce the number of projection views. However, if the projection data are under-sampled or noisy, it would be challenging to produce a correct solution without precise prior information. Recently, deep-learning approaches have demonstrated impressive performance for under-sampled CT reconstruction. In this work, the authors present a multilevel wavelet convolutional neural network (MWCNN) to address the limitations of PCD-based scanners. Data properties of the proposed method in under-sampled spectral CT are analyzed with respect to the proposed deep-running-network-based image reconstruction using two measures: sampling density and data incoherence. This work presents the proposed method and four different methods to restore sparse sampling. We investigate and compare these methods through a simulation and real experiments. In addition, data properties are quantitatively analyzed and compared for the effect of sparse sampling on the image quality. Our results indicate that both sampling density and data incoherence affect the image quality in the studied methods. Among the different methods, the proposed MWCNN shows promising results. Our method shows the highest performance in terms of various evaluation parameters such as the structural similarity, root mean square error, and resolution. Based on the results of imaging and quantitative evaluation, this study confirms that the proposed deep-running network structure shows excellent image reconstruction in sparse-view PCD-based CT. These results demonstrate the feasibility of sparse-view PCD-based CT using the MWCNN. The advantage of sparse view CT is that it can significantly reduce the radiation dose and obtain images with several energy bands by fusing PCDs. These results indicate that the MWCNN possesses great potential for sparse-view PCD-based CT.
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Affiliation(s)
- Minjae Lee
- Department of Radiation Convergence Engineering, Yonsei University, 1 Yonseidae-gil, Wonju, 26493, Republic of Korea
| | - Hyemi Kim
- Department of Radiological Science, Yonsei University, 1 Yonseidae-gil, Wonju, 26493, Republic of Korea
| | - Hyo-Min Cho
- Korea Research Institute of Standards and Science, Daejoen, Republic of Korea
| | - Hee-Joung Kim
- Department of Radiation Convergence Engineering, Yonsei University, 1 Yonseidae-gil, Wonju, 26493, Republic of Korea.
- Department of Radiological Science, Yonsei University, 1 Yonseidae-gil, Wonju, 26493, Republic of Korea.
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Wu W, Hu D, Niu C, Broeke LV, Butler APH, Cao P, Atlas J, Chernoglazov A, Vardhanabhuti V, Wang G. Deep learning based spectral CT imaging. Neural Netw 2021; 144:342-358. [PMID: 34560584 DOI: 10.1016/j.neunet.2021.08.026] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 07/14/2021] [Accepted: 08/20/2021] [Indexed: 10/20/2022]
Abstract
Spectral computed tomography (CT) has attracted much attention in radiation dose reduction, metal artifacts removal, tissue quantification and material discrimination. The x-ray energy spectrum is divided into several bins, each energy-bin-specific projection has a low signal-noise-ratio (SNR) than the current-integrating counterpart, which makes image reconstruction a unique challenge. Traditional wisdom is to use prior knowledge based iterative methods. However, this kind of methods demands a great computational cost. Inspired by deep learning, here we first develop a deep learning based reconstruction method; i.e., U-net with Lpp-norm, Total variation, Residual learning, and Anisotropic adaption (ULTRA). Specifically, we emphasize the various multi-scale feature fusion and multichannel filtering enhancement with a denser connection encoding architecture for residual learning and feature fusion. To address the image deblurring problem associated with the L22- loss, we propose a general Lpp-loss, p>0. Furthermore, the images from different energy bins share similar structures of the same object, the regularization characterizing correlations of different energy bins is incorporated into the Lpp- loss function, which helps unify the deep learning based methods with traditional compressed sensing based methods. Finally, the anisotropically weighted total variation is employed to characterize the sparsity in the spatial-spectral domain to regularize the proposed network In particular, we validate our ULTRA networks on three large-scale spectral CT datasets, and obtain excellent results relative to the competing algorithms. In conclusion, our quantitative and qualitative results in numerical simulation and preclinical experiments demonstrate that our proposed approach is accurate, efficient and robust for high-quality spectral CT image reconstruction.
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Affiliation(s)
- Weiwen Wu
- Department of Diagnostic Radiology, Queen Mary Hospital, University of Hong Kong, Hong Kong, People's Republic of China; Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Department of Biomedical Engineering, School of Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
| | - Dianlin Hu
- The Laboratory of Image Science and Technology, Southeast University, Nanjing, People's Republic of China
| | - Chuang Niu
- Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Department of Biomedical Engineering, School of Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
| | - Lieza Vanden Broeke
- Department of Diagnostic Radiology, Queen Mary Hospital, University of Hong Kong, Hong Kong, People's Republic of China
| | | | - Peng Cao
- Department of Diagnostic Radiology, Queen Mary Hospital, University of Hong Kong, Hong Kong, People's Republic of China
| | - James Atlas
- Department of Radiology, University of Otago, Christchurch, New Zealand
| | | | - Varut Vardhanabhuti
- Department of Diagnostic Radiology, Queen Mary Hospital, University of Hong Kong, Hong Kong, People's Republic of China.
| | - Ge Wang
- Biomedical Imaging Center, Center for Biotechnology and Interdisciplinary Studies, Department of Biomedical Engineering, School of Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
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Singh R, Wu W, Wang G, Kalra MK. Artificial intelligence in image reconstruction: The change is here. Phys Med 2020; 79:113-125. [DOI: 10.1016/j.ejmp.2020.11.012] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 11/06/2020] [Accepted: 11/07/2020] [Indexed: 12/19/2022] Open
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Zhang W, Liang N, Wang Z, Cai A, Wang L, Tang C, Zheng Z, Li L, Yan B, Hu G. Multi-energy CT reconstruction using tensor nonlocal similarity and spatial sparsity regularization. Quant Imaging Med Surg 2020; 10:1940-1960. [PMID: 33014727 DOI: 10.21037/qims-20-594] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Background Multi-energy computed tomography (MECT) based on a photon-counting detector is an emerging imaging modality that collects projections at several energy bins with a single scan. However, the limited number of photons collected into the divided, narrow energy bins results in high quantum noise levels in reconstructed images. This study aims to improve MECT image quality by minimizing noise levels while retaining image details. Methods A novel MECT reconstruction method was proposed by exploiting the nonlocal tensor similarity among interchannel images and spatial sparsity in single-channel images. Similar patches were initially extracted from the interchannel images in spectral and spatial domains, then stacked into a new three-order tensor. Intrinsic tensor sparsity regularization that combined the Tuker and canonical polyadic (CP) low-rank decomposition techniques were applied to exploit the nonlocal similarity of the formulated tensor. Spatial sparsity in single-channel images was modeled by total variation (TV) regularization that utilizes the compressibility of gradient image. A new MECT reconstruction model was established by simultaneously incorporating the intrinsic tensor sparsity and TV regularizations. The iterative alternating minimization method was utilized to solve the reconstruction model based on a flexible framework. Results The proposed method was applied to the digital phantom and real mouse data to assess its feasibility and reliability. The reconstruction and decomposition results in the mouse data were encouraging and demonstrated the ability of the proposed method in noise suppression while preserving image details, not observed with other methods. Imaging data from the digital phantom illustrated this method as achieving the best intuitive reconstruction and decomposition results among all compared methods. They reduced the root mean square error (RMSE) by 89.75%, 50.75%, and 36.54% on the reconstructed images compared with analytic, TV-based, and tensor-based methods, respectively. This phenomenon was also observed with decomposition results, where the RMSE was also reduced by 97.96%, 67.74%, 72.05%, respectively. Conclusions In this study, we proposed a reconstruction method for photon counting detector-based MECT, using the intrinsic tensor sparsity and TV regularizations. Improvements in noise suppression and detail preservation in the digital phantom and real mouse data were validated by the qualitative and quantitative evaluations on the reconstruction and decomposition results, verifying the potential of the proposed method in MECT reconstruction.
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Affiliation(s)
- Wenkun Zhang
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Ningning Liang
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Zhe Wang
- Beijing Engineering Research Center of Radiographic Techniques and Equipment, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, China
| | - Ailong Cai
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Linyuan Wang
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Chao Tang
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Zhizhong Zheng
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Lei Li
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Bin Yan
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
| | - Guoen Hu
- Key Laboratory of Imaging and Intelligent Processing of Henan Province, PLA Strategic Support Force Information Engineering University, Zhengzhou, China
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Zeng D, Yao L, Ge Y, Li S, Xie Q, Zhang H, Bian Z, Zhao Q, Li Y, Xu Z, Meng D, Ma J. Full-Spectrum-Knowledge-Aware Tensor Model for Energy-Resolved CT Iterative Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2020; 39:2831-2843. [PMID: 32112677 DOI: 10.1109/tmi.2020.2976692] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Energy-resolved computed tomography (ErCT) with a photon counting detector concurrently produces multiple CT images corresponding to different photon energy ranges. It has the potential to generate energy-dependent images with improved contrast-to-noise ratio and sufficient material-specific information. Since the number of detected photons in one energy bin in ErCT is smaller than that in conventional energy-integrating CT (EiCT), ErCT images are inherently more noisy than EiCT images, which leads to increased noise and bias in the subsequent material estimation. In this work, we first deeply analyze the intrinsic tensor properties of two-dimensional (2D) ErCT images acquired in different energy bins and then present a F ull- S pectrum-knowledge-aware Tensor analysis and processing (FSTensor) method for ErCT reconstruction to suppress noise-induced artifacts to obtain high-quality ErCT images and high-accuracy material images. The presented method is based on three considerations: (1) 2D ErCT images obtained in different energy bins can be treated as a 3-order tensor with three modes, i.e., width, height and energy bin, and a rich global correlation exists among the three modes, which can be characterized by tensor decomposition. (2) There is a locally piecewise smooth property in the 3-order ErCT images, and it can be captured by a tensor total variation regularization. (3) The images from the full spectrum are much better than the ErCT images with respect to noise variance and structural details and serve as external information to improve the reconstruction performance. We then develop an alternating direction method of multipliers algorithm to numerically solve the presented FSTensor method. We further utilize a genetic algorithm to tackle the parameter selection in ErCT reconstruction, instead of manually determining parameters. Simulation, preclinical and synthesized clinical ErCT results demonstrate that the presented FSTensor method leads to significant improvements over the filtered back-projection, robust principal component analysis, tensor-based dictionary learning and low-rank tensor decomposition with spatial-temporal total variation methods.
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Abstract
Joint image reconstruction for multiphase CT can potentially improve image quality and reduce dose by leveraging the shared information among the phases. Multiphase CT scans are acquired sequentially. Inter-scan patient breathing causes small organ shifts and organ boundary misalignment among different phases. Existing multi-channel regularizers such as the joint total variation (TV) can introduce artifacts at misaligned organ boundaries. We propose a multi-channel regularizer using the infimal convolution (inf-conv) between a joint TV and a separable TV. It is robust against organ misalignment; it can work like a joint TV or a separable TV depending on a parameter setting. The effects of the parameter in the inf-conv regularizer are analyzed in detail. The properties of the inf-conv regularizer are then investigated numerically in a multi-channel image denoising setting. For algorithm implementation, the inf-conv regularizer is nonsmooth; inverse problems with the inf-conv regularizer can be solved using a number of primal-dual algorithms from nonsmooth convex minimization. Our numerical studies using synthesized 2-phase patient data and phantom data demonstrate that the inf-conv regularizer can largely maintain the advantages of the joint TV over the separable TV and reduce image artifacts of the joint TV due to organ misalignment.
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10
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Abadi E, Segars WP, Tsui BMW, Kinahan PE, Bottenus N, Frangi AF, Maidment A, Lo J, Samei E. Virtual clinical trials in medical imaging: a review. J Med Imaging (Bellingham) 2020; 7:042805. [PMID: 32313817 PMCID: PMC7148435 DOI: 10.1117/1.jmi.7.4.042805] [Citation(s) in RCA: 83] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 03/23/2020] [Indexed: 12/13/2022] Open
Abstract
The accelerating complexity and variety of medical imaging devices and methods have outpaced the ability to evaluate and optimize their design and clinical use. This is a significant and increasing challenge for both scientific investigations and clinical applications. Evaluations would ideally be done using clinical imaging trials. These experiments, however, are often not practical due to ethical limitations, expense, time requirements, or lack of ground truth. Virtual clinical trials (VCTs) (also known as in silico imaging trials or virtual imaging trials) offer an alternative means to efficiently evaluate medical imaging technologies virtually. They do so by simulating the patients, imaging systems, and interpreters. The field of VCTs has been constantly advanced over the past decades in multiple areas. We summarize the major developments and current status of the field of VCTs in medical imaging. We review the core components of a VCT: computational phantoms, simulators of different imaging modalities, and interpretation models. We also highlight some of the applications of VCTs across various imaging modalities.
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Affiliation(s)
- Ehsan Abadi
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - William P. Segars
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - Benjamin M. W. Tsui
- Johns Hopkins University, Department of Radiology, Baltimore, Maryland, United States
| | - Paul E. Kinahan
- University of Washington, Department of Radiology, Seattle, Washington, United States
| | - Nick Bottenus
- Duke University, Department of Biomedical Engineering, Durham, North Carolina, United States
- University of Colorado Boulder, Department of Mechanical Engineering, Boulder, Colorado, United States
| | - Alejandro F. Frangi
- University of Leeds, School of Computing, Leeds, United Kingdom
- University of Leeds, School of Medicine, Leeds, United Kingdom
| | - Andrew Maidment
- University of Pennsylvania, Department of Radiology, Philadelphia, Pennsylvania, United States
| | - Joseph Lo
- Duke University, Department of Radiology, Durham, North Carolina, United States
| | - Ehsan Samei
- Duke University, Department of Radiology, Durham, North Carolina, United States
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Wu J, Wang X, Mou X, Chen Y, Liu S. Low Dose CT Image Reconstruction Based on Structure Tensor Total Variation Using Accelerated Fast Iterative Shrinkage Thresholding Algorithm. SENSORS 2020; 20:s20061647. [PMID: 32188068 PMCID: PMC7146515 DOI: 10.3390/s20061647] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 03/07/2020] [Accepted: 03/10/2020] [Indexed: 12/20/2022]
Abstract
Low dose computed tomography (CT) has drawn much attention in the medical imaging field because of its ability to reduce the radiation dose. Recently, statistical iterative reconstruction (SIR) with total variation (TV) penalty has been developed to low dose CT image reconstruction. Nevertheless, the TV penalty has the drawback of creating blocky effects in the reconstructed images. To overcome the limitations of TV, in this paper we firstly introduce the structure tensor total variation (STV1) penalty into SIR framework for low dose CT image reconstruction. Then, an accelerated fast iterative shrinkage thresholding algorithm (AFISTA) is developed to minimize the objective function. The proposed AFISTA reconstruction algorithm was evaluated using numerical simulated low dose projection based on two CT images and realistic low dose projection data of a sheep lung CT perfusion. The experimental results demonstrated that our proposed STV1-based algorithm outperform FBP and TV-based algorithm in terms of removing noise and restraining blocky effects.
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Affiliation(s)
- Junfeng Wu
- Department of Applied Mathematics, Xi’an University of Technology, Xi’an 710048, China;
- The Key Laboratory of Computer Network and Information Integration, Southeast University and Ministry of Education, Nanjing 210096, China;
- Correspondence:
| | - Xiaofeng Wang
- Department of Applied Mathematics, Xi’an University of Technology, Xi’an 710048, China;
| | - Xuanqin Mou
- The Institute of Image processing and Pattern recognition, Xi’an Jiaotong University, Xi’an 710049, China;
| | - Yang Chen
- The Key Laboratory of Computer Network and Information Integration, Southeast University and Ministry of Education, Nanjing 210096, China;
| | - Shuguang Liu
- Equipment Management and Unmanned Aerial Vehicle Engineering College, Air Force Engineering University, Xi’an 710051, China;
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Niu S, Lu S, Zhang Y, Huang X, Zhong Y, Yu G, Wang J. Statistical image-based material decomposition for triple-energy computed tomography using total variation regularization. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2020; 28:751-771. [PMID: 32597827 DOI: 10.3233/xst-200672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
BACKGROUND Triple-energy computed tomography (TECT) can obtain x-ray attenuation measurements at three energy spectra, thereby allowing identification of different material compositions with same or very similar attenuation coefficients. This ability is known as material decomposition, which can decompose TECT images into different basis material image. However, the basis material image would be severely degraded when material decomposition is directly performed on the noisy TECT measurements using a matrix inversion method. OBJECTIVE To achieve high quality basis material image, we present a statistical image-based material decomposition method for TECT, which uses the penalized weighted least-squares (PWLS) criteria with total variation (TV) regularization (PWLS-TV). METHODS The weighted least-squares term involves the noise statistical properties of the material decomposition process, and the TV regularization penalizes differences between local neighboring pixels in a decomposed image, thereby contributing to improving the quality of the basis material image. Subsequently, an alternating optimization method is used to minimize the objective function. RESULTS The performance of PWLS-TV is quantitatively evaluated using digital and mouse thorax phantoms. The experimental results show that PWLS-TV material decomposition method can greatly improve the quality of decomposed basis material image compared to the quality of images obtained using the competing methods in terms of suppressing noise and preserving edge and fine structure details. CONCLUSIONS The PWLS-TV method can simultaneously perform noise reduction and material decomposition in one iterative step, and it results in a considerable improvement of basis material image quality.
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Affiliation(s)
- Shanzhou Niu
- Jiangxi Key Laboratory of Numerical Simulation Technology, School of Mathematics and Computer Science, Gannan Normal University, Ganzhou, China
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Shaohui Lu
- Jiangxi Key Laboratory of Numerical Simulation Technology, School of Mathematics and Computer Science, Gannan Normal University, Ganzhou, China
| | - You Zhang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Xiaokun Huang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Yuncheng Zhong
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Gaohang Yu
- School of Science, Hangzhou Dianzi University, Hangzhou, China
| | - Jing Wang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA
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Anisotropic diffusion filtering method with weighted directional structure tensor. Biomed Signal Process Control 2019. [DOI: 10.1016/j.bspc.2019.101590] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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14
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Wu W, Liu F, Zhang Y, Wang Q, Yu H. Non-Local Low-Rank Cube-Based Tensor Factorization for Spectral CT Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2019; 38:1079-1093. [PMID: 30371357 PMCID: PMC6536296 DOI: 10.1109/tmi.2018.2878226] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Spectral computed tomography (CT) reconstructs material-dependent attenuation images from the projections of multiple narrow energy windows, which is meaningful for material identification and decomposition. Unfortunately, the multi-energy projection datasets usually have lower signal-noise ratios (SNR). Very recently, a spatial-spectral cube matching frame (SSCMF) was proposed to explore the non-local spatial-spectral similarities for spectral CT. This method constructs a group by clustering up a series of non-local spatial-spectral cubes. The small size of spatial patches for such a group makes the SSCMF fail to fully encode the sparsity and low-rank properties. The hard-thresholding and collaboration filtering in the SSCMF also cause difficulty in recovering the image features and spatial edges. While all the steps are operated on 4-D group, the huge computational cost and memory load might not be affordable in practice. To avoid the above limitations and further improve the image quality, we first formulate a non-local cube-based tensor instead of group to encode the sparsity and low-rank properties. Then, as a new regularizer, the Kronecker-basis-representation tensor factorization is employed into a basic spectral CT reconstruction model to enhance the capability of image feature extraction and spatial edge preservation, generating a non-local low-rank cube-based tensor factorization (NLCTF) method. Finally, the split-Bregman method is adopted to solve the NLCTF model. Both numerical simulations and preclinical mouse studies are performed to validate and evaluate the NLCTF algorithm. The results show that the NLCTF method outperforms the other state-of-the-art competing algorithms.
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15
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Yao L, Zeng D, Chen G, Liao Y, Li S, Zhang Y, Wang Y, Tao X, Niu S, Lv Q, Bian Z, Ma J, Huang J. Multi-energy computed tomography reconstruction using a nonlocal spectral similarity model. Phys Med Biol 2019; 64:035018. [PMID: 30577033 DOI: 10.1088/1361-6560/aafa99] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Multi-energy computed tomography (MECT) is able to acquire simultaneous multi-energy measurements from one scan. In addition, it allows material differentiation and quantification effectively. However, due to the limited energy bin width, the number of photons detected in an energy-specific channel is smaller than that in traditional CT, which results in image quality degradation. To address this issue, in this work, we develop a statistical iterative reconstruction algorithm to acquire high-quality MECT images and high-accuracy material-specific images. Specifically, this algorithm fully incorporates redundant self-similarities within nonlocal regions in the MECT image at one bin and rich spectral similarities among MECT images at all bins. For simplicity, the presented algorithm is referred to as 'MECT-NSS'. Moreover, an efficient optimization algorithm is developed to solve the MECT-NSS objective function. Then, a comprehensive evaluation of parameter selection for the MECT-NSS algorithm is conducted. In the experiment, the datasets include images from three phantoms and one patient to validate and evaluate the MECT-NSS reconstruction performance. The qualitative and quantitative results demonstrate that the presented MECT-NSS can successfully yield better MECT image quality and more accurate material estimation than the competing algorithms.
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Affiliation(s)
- Lisha Yao
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, People's Republic of China. Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou 510515, People's Republic of China. These authors contributed equally
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16
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Zhang S, Zeng D, Niu S, Zhang H, Xu H, Li S, Qiu S, Ma J. High-fidelity image deconvolution for low-dose cerebral perfusion CT imaging via low-rank and total variation regularizations. Neurocomputing 2019. [DOI: 10.1016/j.neucom.2018.09.079] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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17
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Jia X, Liao Y, Zeng D, Zhang H, Zhang Y, He J, Bian Z, Wang Y, Tao X, Liang Z, Huang J, Ma J. Statistical CT reconstruction using region-aware texture preserving regularization learning from prior normal-dose CT image. Phys Med Biol 2018; 63:225020. [PMID: 30457116 PMCID: PMC6309620 DOI: 10.1088/1361-6560/aaebc9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
In some clinical applications, prior normal-dose CT (NdCT) images are available, and the valuable textures and structure features in them may be used to promote follow-up low-dose CT (LdCT) reconstruction. This study aims to learn texture information from the NdCT images and leverage it for follow-up LdCT image reconstruction to preserve textures and structure features. Specifically, the proposed reconstruction method first learns the texture information from those patches with similar structures in NdCT image, and the similar patches can be clustered by searching context features efficiently from the surroundings of the current patch. Then it utilizes redundant texture information from the similar patches as a priori knowledge to describe specific regions in the LdCT image. The advanced region-aware texture preserving prior is termed as 'RATP'. The main advantage of the PATP prior is that it can properly learn the texture features from available NdCT images and adaptively characterize the region-specific structures in the LdCT image. The experiments using patient data were performed to evaluate the performance of the proposed method. The proposed RATP method demonstrated superior performance in LdCT imaging compared to the filtered back projection (FBP) and statistical iterative reconstruction (SIR) methods using Gaussian regularization, Huber regularization and the original texture preserving regularization.
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Affiliation(s)
- Xiao Jia
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- School of Software Engineering, Nanyang Normal University, Nanyang, Henan 473061, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Yuting Liao
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Dong Zeng
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Hao Zhang
- Department of Radiation Oncology, Stanford University, Stanford, CA 94305, United States of America
| | - Yuanke Zhang
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Ji He
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Zhaoying Bian
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Yongbo Wang
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Xi Tao
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Zhengrong Liang
- Department of Radiology and Biomedical Engineering, State University of New York at Stony Brook, NY 11794, United States of America
| | - Jing Huang
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
| | - Jianhua Ma
- School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong 510515, People’s Republic of China
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18
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Wang Y, Liao Y, Zhang Y, He J, Li S, Bian Z, Zhang H, Gao Y, Meng D, Zuo W, Zeng D, Ma J. Iterative quality enhancement via residual-artifact learning networks for low-dose CT. Phys Med Biol 2018; 63:215004. [PMID: 30265251 DOI: 10.1088/1361-6560/aae511] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Radiation exposure and the associated risk of cancer for patients in computed tomography (CT) scans have been major clinical concerns. The radiation exposure can be reduced effectively via lowering the x-ray tube current (mA). However, this strategy may lead to excessive noise and streak artifacts in the conventional filtered back-projection reconstructed images. To address this issue, some deep convolutional neural network (ConvNet) based approaches have been developed for low-dose CT imaging inspired by the recent development of machine learning. Nevertheless, some of the image textures reconstructed by the ConvNet could be corrupted by the severe streaks, especially in ultra-low-dose cases, which could be close to prostheses and hamper diagnosis. Therefore, in this work, we propose an iterative residual-artifact learning ConvNet (IRLNet) approach to improve the reconstruction performance over the ConvNet based approaches. Specifically, the proposed IRLNet estimates the high-frequency details within the noise and then removes them iteratively; after eliminating severe streaks in the low-dose CT images, the residual low-frequency details can be processed through the conventional network. Moreover, the proposed IRLNet scheme can be extended for robust handling of quantitative dual energy CT/cerebral perfusion CT imaging, and statistical iterative reconstruction. Real patient data are used to evaluate the proposed IRLNet, and the experimental results demonstrate that the proposed IRLNet approach outperforms the previous ConvNet based approaches in reducing the image noise and streak artifacts efficiently at the same time as preserving edge details well, suggesting that the proposed IRLNet approach can be used to improve the CT image quality, especially in ultra-low-dose cases.
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Affiliation(s)
- Yongbo Wang
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, People's Republic of China. Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangdong 510515, People's Republic of China. These authors contributed equally
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19
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Niu S, Zhang Y, Zhong Y, Liu G, Lu S, Zhang X, Hu S, Wang T, Yu G, Wang J. Iterative reconstruction for photon-counting CT using prior image constrained total generalized variation. Comput Biol Med 2018; 103:167-182. [PMID: 30384175 DOI: 10.1016/j.compbiomed.2018.10.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 10/18/2018] [Accepted: 10/18/2018] [Indexed: 10/28/2022]
Abstract
In this paper, we present an iterative reconstruction for photon-counting CT using prior image constrained total generalized variation (PICTGV). This work aims to exploit structural correlation in the energy domain to reduce image noise in photon-counting CT with narrow energy bins. This is motived by the fact that the similarity between high-quality full-spectrum image and target image is an important prior knowledge for photon-counting CT reconstruction. The PICTGV method is implemented using a splitting-based fast iterative shrinkage-threshold algorithm (FISTA). Evaluations conducted with simulated and real photon-counting CT data demonstrate that PICTGV method outperforms the existing prior image constrained compressed sensing (PICCS) method in terms of noise reduction, artifact suppression and resolution preservation. In the simulated head data study, the average relative root mean squared error is reduced from 2.3% in PICCS method to 1.2% in PICTGV method, and the average universal quality index increases from 0.67 in PICCS method to 0.76 in PICTGV method. The results show that the present PICTGV method improves the performance of the PICCS method for photon-counting CT reconstruction with narrow energy bins.
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Affiliation(s)
- Shanzhou Niu
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA; School of Mathematics and Computer Science, Gannan Normal University, Ganzhou, 341000, China
| | - You Zhang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA
| | - Yuncheng Zhong
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA
| | - Guoliang Liu
- School of Information Engineering, Gannan Medical University, Ganzhou, 341000, China
| | - Shaohui Lu
- First Affiliated Hospital of Gannan Medical University, Gannan Medical University, Ganzhou, 341000, China
| | - Xile Zhang
- Department of Radiation Oncology, Peking University Third Hospital, Beijing, 100083, China
| | - Shengzhou Hu
- School of Mathematics and Computer Science, Gannan Normal University, Ganzhou, 341000, China
| | - Tinghua Wang
- School of Mathematics and Computer Science, Gannan Normal University, Ganzhou, 341000, China
| | - Gaohang Yu
- School of Science, Hangzhou Dianzi University, Hangzhou, 310000, China
| | - Jing Wang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, 75235, USA.
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20
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Wu W, Zhang Y, Wang Q, Liu F, Luo F, Yu H. Spatial-Spectral Cube Matching Frame for Spectral CT Reconstruction. INVERSE PROBLEMS 2018; 34:104003. [PMID: 30906099 PMCID: PMC6424516 DOI: 10.1088/1361-6420/aad67b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Spectral computed tomography (CT) reconstructs the same scanned object from projections of multiple narrow energy windows, and it can be used for material identification and decomposition. However, the multi-energy projection dataset has a lower signal-noise-ratio (SNR), resulting in poor reconstructed image quality. To address this thorny problem, we develop a spectral CT reconstruction method, namely spatial-spectral cube matching frame (SSCMF). This method is inspired by the following three facts: i) human body usually consists of two or three basic materials implying that the reconstructed spectral images have a strong sparsity; ii) the same basic material component in a single channel image has similar intensity and structures in local regions. Different material components within the same energy channel share similar structural information; iii) multi-energy projection datasets are collected from the subject by using different narrow energy windows, which means images reconstructed from different energy-channels share similar structures. To explore those information, we first establish a tensor cube matching frame (CMF) for a BM4D denoising procedure. Then, as a new regularizer, the CMF is introduced into a basic spectral CT reconstruction model, generating the SSCMF method. Because the SSCMF model contains an L0-norm minimization of 4D transform coefficients, an effective strategy is employed for optimization. Both numerical simulations and realistic preclinical mouse studies are performed. The results show that the SSCMF method outperforms the state-of-the-art algorithms, including the simultaneous algebraic reconstruction technique, total variation minimization, total variation plus low rank, and tensor dictionary learning.
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Affiliation(s)
- Weiwen Wu
- Key Lab of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing 400044, China
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA
| | - Yanbo Zhang
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA
| | - Qian Wang
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA
| | - Fenglin Liu
- Key Lab of Optoelectronic Technology and Systems, Ministry of Education, Chongqing University, Chongqing 400044, China
- Engineering Research Center of Industrial Computed Tomography Nondestructive Testing, Ministry of Education, Chongqing University, Chongqing 400044, China
| | - Fulin Luo
- State Key Laboratory of Information Engineering in Surveying, Mapping and Remote Sensing, Wuhan University, Wuhan 430079, China
| | - Hengyong Yu
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA
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21
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Gu C, Zeng D, Lin J, Li S, He J, Zhang H, Bian Z, Niu S, Zhang Z, Huang J, Chen B, Zhao D, Chen W, Ma J. Promote quantitative ischemia imaging via myocardial perfusion CT iterative reconstruction with tensor total generalized variation regularization. ACTA ACUST UNITED AC 2018; 63:125009. [DOI: 10.1088/1361-6560/aac7bd] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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22
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Segars WP, Tsui BMW, Jing Cai, Fang-Fang Yin, Fung GSK, Samei E. Application of the 4-D XCAT Phantoms in Biomedical Imaging and Beyond. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:680-692. [PMID: 28809677 PMCID: PMC5809240 DOI: 10.1109/tmi.2017.2738448] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The four-dimensional (4-D) eXtended CArdiac-Torso (XCAT) series of phantoms was developed to provide accurate computerized models of the human anatomy and physiology. The XCAT series encompasses a vast population of phantoms of varying ages from newborn to adult, each including parameterized models for the cardiac and respiratory motions. With great flexibility in the XCAT's design, any number of body sizes, different anatomies, cardiac or respiratory motions or patterns, patient positions and orientations, and spatial resolutions can be simulated. As such, the XCAT phantoms are gaining a wide use in biomedical imaging research. There they can provide a virtual patient base from which to quantitatively evaluate and improve imaging instrumentation, data acquisition, techniques, and image reconstruction and processing methods which can lead to improved image quality and more accurate clinical diagnoses. The phantoms have also found great use in radiation dosimetry, radiation therapy, medical device design, and even the security and defense industry. This review paper highlights some specific areas in which the XCAT phantoms have found use within biomedical imaging and other fields. From these examples, we illustrate the increasingly important role that computerized phantoms and computer simulation are playing in the research community.
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23
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Niu S, Yu G, Ma J, Wang J. Nonlocal low-rank and sparse matrix decomposition for spectral CT reconstruction. INVERSE PROBLEMS 2018; 34:024003. [PMID: 30294061 PMCID: PMC6168215 DOI: 10.1088/1361-6420/aa942c] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Spectral computed tomography (CT) has been a promising technique in research and clinic because of its ability to produce improved energy resolution images with narrow energy bins. However, the narrow energy bin image is often affected by serious quantum noise because of the limited number of photons used in the corresponding energy bin. To address this problem, we present an iterative reconstruction method for spectral CT using nonlocal low-rank and sparse matrix decomposition (NLSMD), which exploits the self-similarity of patches that are collected in multi-energy images. Specifically, each set of patches can be decomposed into a low-rank component and a sparse component, and the low-rank component represents the stationary background over different energy bins, while the sparse component represents the rest of different spectral features in individual energy bins. Subsequently, an effective alternating optimization algorithm was developed to minimize the associated objective function. To validate and evaluate the NLSMD method, qualitative and quantitative studies were conducted by using simulated and real spectral CT data. Experimental results show that the NLSMD method improves spectral CT images in terms of noise reduction, artifacts suppression and resolution preservation.
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Affiliation(s)
- Shanzhou Niu
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA
- School of Mathematics and Computer Science, Gannan Normal University, Ganzhou 341000, China
| | - Gaohang Yu
- School of Mathematics and Computer Science, Gannan Normal University, Ganzhou 341000, China
| | - Jianhua Ma
- School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, China
| | - Jing Wang
- Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA
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24
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Lin J, Zhang H, Huang J, Bian Z, Zhang S, Wang Y, Liao Y, Li S, Zhang H, Zeng D, Ma J. Iterative reconstruction for low dose dual energy CT using information-divergence constrained spectral redundancy information. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2018; 26:311-330. [PMID: 29562570 DOI: 10.3233/xst-17272] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Dual energy computed tomography (DECT) can improve the capability of differentiating different materials compared with conventional CT. However, due to non-negligible radiation exposure to patients, dose reduction has recently become a critical concern in CT imaging field. In this work, to reduce noise at the same time maintain DECT images quality, we present an iterative reconstruction algorithm for low-dose DECT images where in the objective function of the algorithm consists of a data-fidelity term and a regularization term. The former term is based on alpha-divergence to describe the statistical distribution of the DE sinogram data. And the latter term is based on the redundant information to reflect the prior information of the desired DECT images. For simplicity, the presented algorithm is termed as "AlphaD-aviNLM". To minimize the associative objective function, a modified proximal forward-backward splitting algorithm is proposed. Digital phantom, physical phantom, and patient data were utilized to validate and evaluate the presented AlphaD-aviNLM algorithm. The experimental results characterize the performance of the presented AlphaD-aviNLM algorithm. Speficically, in the digital phantom study, the presented AlphaD-aviNLM algorithm performs better than the PWLS-TV, PWLS-aviNLM, and AlphaD-TV with more than 49%, 34%, and 40% gains for the RMSE metric, 1.3%, 0.4%, and 0.7% gains for the FSIM metric and 13%, 8%, and 11% gains for the PSNR metric. In the physical phantom study, the presented AlphaD-aviNLM algorithm performs better than the PWLS-TV, PWLS-aviNLM, and AlphaD-TV with more than 0.55%, 0.07%, and 0.16% gains for the FSIM metric.
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Affiliation(s)
- Jiahui Lin
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Hao Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA
| | - Jing Huang
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Zhaoying Bian
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Shanli Zhang
- The First Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, China
| | - Yongbo Wang
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Yuting Liao
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Sui Li
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Hua Zhang
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Dong Zeng
- Department of Biomedical Engineering, Guangdong Provincial Key Laborary of Medical Image Processing, Southern Medical University, Guangzhou, Guangdong, China
| | - Jianhua Ma
- Department of Biomedical Engineering, Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Southern Medical University, Guangzhou, Guangdong, China
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25
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Zhang H, Zeng D, Lin J, Zhang H, Bian Z, Huang J, Gao Y, Zhang S, Zhang H, Feng Q, Liang Z, Chen W, Ma J. Iterative reconstruction for dual energy CT with an average image-induced nonlocal means regularization. Phys Med Biol 2017; 62:5556-5574. [PMID: 28471750 PMCID: PMC5497789 DOI: 10.1088/1361-6560/aa7122] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Reducing radiation dose in dual energy computed tomography (DECT) is highly desirable but it may lead to excessive noise in the filtered backprojection (FBP) reconstructed DECT images, which can inevitably increase the diagnostic uncertainty. To obtain clinically acceptable DECT images from low-mAs acquisitions, in this work we develop a novel scheme based on measurement of DECT data. In this scheme, inspired by the success of edge-preserving non-local means (NLM) filtering in CT imaging and the intrinsic characteristics underlying DECT images, i.e. global correlation and non-local similarity, an averaged image induced NLM-based (aviNLM) regularization is incorporated into the penalized weighted least-squares (PWLS) framework. Specifically, the presented NLM-based regularization is designed by averaging the acquired DECT images, which takes the image similarity within the two energies into consideration. In addition, the weighted least-squares term takes into account DECT data-dependent variance. For simplicity, the presented scheme was termed as 'PWLS-aviNLM'. The performance of the presented PWLS-aviNLM algorithm was validated and evaluated on digital phantom, physical phantom and patient data. The extensive experiments validated that the presented PWLS-aviNLM algorithm outperforms the FBP, PWLS-TV and PWLS-NLM algorithms quantitatively. More importantly, it delivers the best qualitative results with the finest details and the fewest noise-induced artifacts, due to the aviNLM regularization learned from DECT images. This study demonstrated the feasibility and efficacy of the presented PWLS-aviNLM algorithm to improve the DECT reconstruction and resulting material decomposition.
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Affiliation(s)
- Houjin Zhang
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Dong Zeng
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Jiahui Lin
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Hao Zhang
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA
| | - Zhaoying Bian
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Jing Huang
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Yuanyuan Gao
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Shanli Zhang
- The First Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, China
| | - Hua Zhang
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Qianjin Feng
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Zhengrong Liang
- Departments of Radiology and Biomedical Engineering, Stony Brook University, Stony Brook, New York 11794 USA
| | - Wufan Chen
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangdong Provincial Key Laboratory of Medical Image Processing, Southern Medical University Guangzhou, Guangdong 510515, China
| | - Jianhua Ma
- Department of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong 510515, China
- Guangzhou Key Laboratory of Medical Radiation Imaging and Detection Technology, Guangzhou 510515, China
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